Multiple sequence alignment - TraesCS1B01G273900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G273900 chr1B 100.000 2654 0 0 1409 4062 480849288 480851941 0.000000e+00 4902.0
1 TraesCS1B01G273900 chr1B 100.000 1067 0 0 1 1067 480847880 480848946 0.000000e+00 1971.0
2 TraesCS1B01G273900 chr1B 89.011 182 18 2 3689 3869 480898022 480898202 1.470000e-54 224.0
3 TraesCS1B01G273900 chr1B 100.000 36 0 0 3937 3972 480851781 480851816 2.620000e-07 67.6
4 TraesCS1B01G273900 chr1B 100.000 36 0 0 3902 3937 480851816 480851851 2.620000e-07 67.6
5 TraesCS1B01G273900 chr1D 91.375 1171 54 12 1409 2565 357458034 357459171 0.000000e+00 1559.0
6 TraesCS1B01G273900 chr1D 88.076 889 61 31 2758 3631 357459307 357460165 0.000000e+00 1013.0
7 TraesCS1B01G273900 chr1D 86.202 645 35 22 456 1067 357457280 357457903 0.000000e+00 649.0
8 TraesCS1B01G273900 chr1D 94.475 181 6 3 3692 3869 357460166 357460345 4.000000e-70 276.0
9 TraesCS1B01G273900 chr1D 90.110 182 17 1 3689 3869 357461251 357461432 6.790000e-58 235.0
10 TraesCS1B01G273900 chr1D 91.667 108 8 1 2566 2673 357459203 357459309 9.100000e-32 148.0
11 TraesCS1B01G273900 chr1D 93.443 61 4 0 3783 3843 350977676 350977616 1.550000e-14 91.6
12 TraesCS1B01G273900 chr1A 86.588 1096 99 31 1 1067 458563185 458564261 0.000000e+00 1166.0
13 TraesCS1B01G273900 chr1A 94.249 626 26 6 2753 3373 458565751 458566371 0.000000e+00 948.0
14 TraesCS1B01G273900 chr1A 93.811 614 30 5 1955 2565 458565003 458565611 0.000000e+00 917.0
15 TraesCS1B01G273900 chr1A 86.994 469 36 11 1409 1864 458564391 458564847 4.690000e-139 505.0
16 TraesCS1B01G273900 chr1A 88.679 159 13 5 3711 3868 458567351 458567505 5.360000e-44 189.0
17 TraesCS1B01G273900 chr1A 88.393 112 10 2 2566 2675 458565644 458565754 9.160000e-27 132.0
18 TraesCS1B01G273900 chr1A 96.078 51 2 0 3367 3417 458566404 458566454 2.600000e-12 84.2
19 TraesCS1B01G273900 chr3B 95.946 74 3 0 2672 2745 539670677 539670604 1.980000e-23 121.0
20 TraesCS1B01G273900 chr2A 94.667 75 4 0 2671 2745 763024198 763024272 2.570000e-22 117.0
21 TraesCS1B01G273900 chr2A 95.161 62 3 0 2664 2725 606523812 606523751 9.290000e-17 99.0
22 TraesCS1B01G273900 chr7D 93.333 75 5 0 2671 2745 23509276 23509202 1.190000e-20 111.0
23 TraesCS1B01G273900 chr6A 98.246 57 1 0 2672 2728 78134881 78134825 2.580000e-17 100.0
24 TraesCS1B01G273900 chr7B 93.846 65 4 0 2661 2725 383736258 383736194 9.290000e-17 99.0
25 TraesCS1B01G273900 chr3D 95.082 61 3 0 3783 3843 576906669 576906729 3.340000e-16 97.1
26 TraesCS1B01G273900 chrUn 93.443 61 4 0 3783 3843 275335122 275335062 1.550000e-14 91.6
27 TraesCS1B01G273900 chr4D 93.443 61 4 0 3783 3843 97361825 97361765 1.550000e-14 91.6
28 TraesCS1B01G273900 chr4D 93.443 61 4 0 3783 3843 241311023 241310963 1.550000e-14 91.6
29 TraesCS1B01G273900 chr5A 87.342 79 8 2 2647 2725 353861911 353861835 5.590000e-14 89.8
30 TraesCS1B01G273900 chr4A 88.312 77 5 3 2672 2745 691306382 691306307 5.590000e-14 89.8
31 TraesCS1B01G273900 chr4A 93.333 45 3 0 3893 3937 739721930 739721974 2.620000e-07 67.6
32 TraesCS1B01G273900 chr2D 87.013 77 10 0 2669 2745 314166528 314166604 2.010000e-13 87.9
33 TraesCS1B01G273900 chr5B 100.000 28 0 0 2722 2749 577946397 577946370 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G273900 chr1B 480847880 480851941 4061 False 1752.050000 4902 100.000000 1 4062 4 chr1B.!!$F2 4061
1 TraesCS1B01G273900 chr1D 357457280 357461432 4152 False 646.666667 1559 90.317500 456 3869 6 chr1D.!!$F1 3413
2 TraesCS1B01G273900 chr1A 458563185 458567505 4320 False 563.028571 1166 90.684571 1 3868 7 chr1A.!!$F1 3867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.030235 CGGACGGTGATATGCGAGAA 59.970 55.0 0.0 0.0 0.00 2.87 F
1488 1559 0.031314 CTGCGCGGATAGATCTGTGT 59.969 55.0 11.9 0.0 43.72 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1823 0.543277 ACAGCAGCAGCAGCCTAATA 59.457 50.0 6.1 0.0 45.49 0.98 R
3428 3664 0.031857 CAAAAGGCACGCACCATCAA 59.968 50.0 0.0 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.924918 TCGATAGAGCACCTAATGAGC 57.075 47.619 0.00 0.00 42.67 4.26
25 26 2.558795 TCGATAGAGCACCTAATGAGCC 59.441 50.000 0.00 0.00 42.67 4.70
33 34 0.824759 ACCTAATGAGCCGTGTCTCC 59.175 55.000 0.00 0.00 32.22 3.71
36 37 0.454600 TAATGAGCCGTGTCTCCGAC 59.545 55.000 0.00 0.00 32.22 4.79
45 46 1.532316 TGTCTCCGACGGGTCCTTT 60.532 57.895 15.25 0.00 34.95 3.11
48 49 2.524887 TCCGACGGGTCCTTTGGT 60.525 61.111 15.25 0.00 33.83 3.67
49 50 2.108278 CTCCGACGGGTCCTTTGGTT 62.108 60.000 15.25 0.00 33.83 3.67
71 72 5.496133 TCCGTTCGGTTTTATGTTTTCAA 57.504 34.783 11.04 0.00 0.00 2.69
74 75 5.915758 CCGTTCGGTTTTATGTTTTCAATGA 59.084 36.000 2.82 0.00 0.00 2.57
79 80 8.221801 TCGGTTTTATGTTTTCAATGAATTCG 57.778 30.769 0.00 0.00 0.00 3.34
85 86 8.741101 TTATGTTTTCAATGAATTCGTCTTGG 57.259 30.769 0.00 0.00 0.00 3.61
86 87 5.527951 TGTTTTCAATGAATTCGTCTTGGG 58.472 37.500 0.00 0.00 0.00 4.12
88 89 5.782893 TTTCAATGAATTCGTCTTGGGTT 57.217 34.783 0.00 0.00 0.00 4.11
89 90 5.371115 TTCAATGAATTCGTCTTGGGTTC 57.629 39.130 0.00 0.00 0.00 3.62
90 91 4.651778 TCAATGAATTCGTCTTGGGTTCT 58.348 39.130 0.00 0.00 0.00 3.01
91 92 4.455533 TCAATGAATTCGTCTTGGGTTCTG 59.544 41.667 0.00 0.00 0.00 3.02
93 94 3.815809 TGAATTCGTCTTGGGTTCTGTT 58.184 40.909 0.04 0.00 0.00 3.16
94 95 3.563808 TGAATTCGTCTTGGGTTCTGTTG 59.436 43.478 0.04 0.00 0.00 3.33
95 96 2.702592 TTCGTCTTGGGTTCTGTTGT 57.297 45.000 0.00 0.00 0.00 3.32
96 97 2.702592 TCGTCTTGGGTTCTGTTGTT 57.297 45.000 0.00 0.00 0.00 2.83
123 124 7.873719 TTTTGGTCTTCATGAGTTTCTACAA 57.126 32.000 0.00 0.00 0.00 2.41
145 146 3.458487 AGCCCCTTATTCCTTATCGTTGT 59.542 43.478 0.00 0.00 0.00 3.32
149 150 6.679638 GCCCCTTATTCCTTATCGTTGTTTTC 60.680 42.308 0.00 0.00 0.00 2.29
159 160 6.016610 CCTTATCGTTGTTTTCTTTCTTCCCA 60.017 38.462 0.00 0.00 0.00 4.37
161 162 8.624367 TTATCGTTGTTTTCTTTCTTCCCATA 57.376 30.769 0.00 0.00 0.00 2.74
162 163 6.308371 TCGTTGTTTTCTTTCTTCCCATAC 57.692 37.500 0.00 0.00 0.00 2.39
163 164 5.823570 TCGTTGTTTTCTTTCTTCCCATACA 59.176 36.000 0.00 0.00 0.00 2.29
164 165 5.912955 CGTTGTTTTCTTTCTTCCCATACAC 59.087 40.000 0.00 0.00 0.00 2.90
169 170 2.094390 TCTTTCTTCCCATACACGGACG 60.094 50.000 0.00 0.00 0.00 4.79
183 184 0.030235 CGGACGGTGATATGCGAGAA 59.970 55.000 0.00 0.00 0.00 2.87
191 192 1.548973 GATATGCGAGAACGTGGCCG 61.549 60.000 0.00 0.00 41.98 6.13
213 214 2.240493 GGCACGTGCTGGTCTATATT 57.760 50.000 36.84 0.00 41.70 1.28
216 217 2.540101 GCACGTGCTGGTCTATATTGAC 59.460 50.000 32.55 8.59 38.21 3.18
225 226 6.821160 TGCTGGTCTATATTGACGATTTTTCA 59.179 34.615 10.55 1.84 37.81 2.69
226 227 7.498900 TGCTGGTCTATATTGACGATTTTTCAT 59.501 33.333 10.55 0.00 37.81 2.57
241 242 2.760634 TTCATCCGCTGCTTCTACAA 57.239 45.000 0.00 0.00 0.00 2.41
242 243 2.760634 TCATCCGCTGCTTCTACAAA 57.239 45.000 0.00 0.00 0.00 2.83
245 246 2.543777 TCCGCTGCTTCTACAAACTT 57.456 45.000 0.00 0.00 0.00 2.66
246 247 2.846193 TCCGCTGCTTCTACAAACTTT 58.154 42.857 0.00 0.00 0.00 2.66
269 270 6.976636 TTTGGTTTAAAAAGGTTTGCTCTG 57.023 33.333 0.00 0.00 0.00 3.35
271 272 5.656480 TGGTTTAAAAAGGTTTGCTCTGAC 58.344 37.500 0.00 0.00 0.00 3.51
272 273 5.420739 TGGTTTAAAAAGGTTTGCTCTGACT 59.579 36.000 0.00 0.00 0.00 3.41
274 275 6.916387 GGTTTAAAAAGGTTTGCTCTGACTAC 59.084 38.462 0.00 0.00 0.00 2.73
295 297 0.904649 TGGAGACCAGATGCGACATT 59.095 50.000 0.00 0.00 0.00 2.71
303 305 5.478332 AGACCAGATGCGACATTGAGATATA 59.522 40.000 0.00 0.00 0.00 0.86
304 306 5.473931 ACCAGATGCGACATTGAGATATAC 58.526 41.667 0.00 0.00 0.00 1.47
306 308 6.434340 ACCAGATGCGACATTGAGATATACTA 59.566 38.462 0.00 0.00 0.00 1.82
307 309 6.971756 CCAGATGCGACATTGAGATATACTAG 59.028 42.308 0.00 0.00 0.00 2.57
310 312 3.544285 GCGACATTGAGATATACTAGCGC 59.456 47.826 0.00 0.00 0.00 5.92
311 313 3.781323 CGACATTGAGATATACTAGCGCG 59.219 47.826 0.00 0.00 0.00 6.86
312 314 3.502920 ACATTGAGATATACTAGCGCGC 58.497 45.455 26.66 26.66 0.00 6.86
314 316 0.446616 TGAGATATACTAGCGCGCCG 59.553 55.000 30.33 21.97 0.00 6.46
315 317 0.447011 GAGATATACTAGCGCGCCGT 59.553 55.000 30.33 26.58 0.00 5.68
316 318 0.447011 AGATATACTAGCGCGCCGTC 59.553 55.000 30.33 14.82 0.00 4.79
317 319 0.447011 GATATACTAGCGCGCCGTCT 59.553 55.000 30.33 19.50 0.00 4.18
318 320 0.447011 ATATACTAGCGCGCCGTCTC 59.553 55.000 30.33 0.00 0.00 3.36
319 321 0.602106 TATACTAGCGCGCCGTCTCT 60.602 55.000 30.33 11.01 0.00 3.10
325 330 4.498520 CGCGCCGTCTCTGGATGT 62.499 66.667 0.00 0.00 0.00 3.06
340 345 4.081642 TCTGGATGTAGGAGGAAAAAGACG 60.082 45.833 0.00 0.00 0.00 4.18
360 365 3.044986 CGTCAACACATTCAAGGCTTTG 58.955 45.455 1.35 1.35 35.57 2.77
361 366 3.383761 GTCAACACATTCAAGGCTTTGG 58.616 45.455 8.88 0.00 34.97 3.28
365 370 5.716228 TCAACACATTCAAGGCTTTGGATAT 59.284 36.000 8.88 0.00 30.46 1.63
367 372 7.395772 TCAACACATTCAAGGCTTTGGATATAA 59.604 33.333 8.88 0.00 30.46 0.98
370 375 8.416329 ACACATTCAAGGCTTTGGATATAATTC 58.584 33.333 8.88 0.00 30.46 2.17
380 385 9.836864 GGCTTTGGATATAATTCCATTTTTCTT 57.163 29.630 0.00 0.00 45.08 2.52
433 439 5.535753 AAGACTTAAAATATGGCATGGGC 57.464 39.130 10.98 0.00 40.13 5.36
507 513 1.724654 CGCAATTTGCCACACTCGTAC 60.725 52.381 15.45 0.00 41.12 3.67
543 549 4.225267 ACCTAATTTCAACCAGGATCGTCT 59.775 41.667 0.00 0.00 32.25 4.18
579 596 1.137594 ACACGATTCCCCTTTCCCCA 61.138 55.000 0.00 0.00 0.00 4.96
580 597 0.258774 CACGATTCCCCTTTCCCCAT 59.741 55.000 0.00 0.00 0.00 4.00
581 598 0.551396 ACGATTCCCCTTTCCCCATC 59.449 55.000 0.00 0.00 0.00 3.51
605 665 1.144057 GACCCGGTGCACCATAGAG 59.856 63.158 34.16 17.89 35.14 2.43
614 674 4.265073 GGTGCACCATAGAGAAACAGAAT 58.735 43.478 31.23 0.00 35.64 2.40
617 677 6.374333 GGTGCACCATAGAGAAACAGAATAAA 59.626 38.462 31.23 0.00 35.64 1.40
618 678 7.414540 GGTGCACCATAGAGAAACAGAATAAAG 60.415 40.741 31.23 0.00 35.64 1.85
619 679 7.334421 GTGCACCATAGAGAAACAGAATAAAGA 59.666 37.037 5.22 0.00 0.00 2.52
620 680 7.334421 TGCACCATAGAGAAACAGAATAAAGAC 59.666 37.037 0.00 0.00 0.00 3.01
621 681 7.201652 GCACCATAGAGAAACAGAATAAAGACC 60.202 40.741 0.00 0.00 0.00 3.85
622 682 7.281100 CACCATAGAGAAACAGAATAAAGACCC 59.719 40.741 0.00 0.00 0.00 4.46
623 683 6.480320 CCATAGAGAAACAGAATAAAGACCCG 59.520 42.308 0.00 0.00 0.00 5.28
624 684 4.833390 AGAGAAACAGAATAAAGACCCGG 58.167 43.478 0.00 0.00 0.00 5.73
625 685 4.286291 AGAGAAACAGAATAAAGACCCGGT 59.714 41.667 0.00 0.00 0.00 5.28
626 686 4.324267 AGAAACAGAATAAAGACCCGGTG 58.676 43.478 0.00 0.00 0.00 4.94
627 687 2.109425 ACAGAATAAAGACCCGGTGC 57.891 50.000 0.00 0.00 0.00 5.01
628 688 1.349688 ACAGAATAAAGACCCGGTGCA 59.650 47.619 0.00 0.00 0.00 4.57
629 689 1.737793 CAGAATAAAGACCCGGTGCAC 59.262 52.381 8.80 8.80 0.00 4.57
630 690 1.092348 GAATAAAGACCCGGTGCACC 58.908 55.000 26.78 26.78 0.00 5.01
631 691 0.402504 AATAAAGACCCGGTGCACCA 59.597 50.000 34.16 13.70 35.14 4.17
632 692 0.322187 ATAAAGACCCGGTGCACCAC 60.322 55.000 34.16 21.03 35.14 4.16
633 693 1.697082 TAAAGACCCGGTGCACCACA 61.697 55.000 34.16 7.57 35.86 4.17
634 694 2.958578 AAAGACCCGGTGCACCACAG 62.959 60.000 34.16 23.36 35.86 3.66
635 695 3.936203 GACCCGGTGCACCACAGA 61.936 66.667 34.16 0.00 35.86 3.41
636 696 3.469863 GACCCGGTGCACCACAGAA 62.470 63.158 34.16 0.00 35.86 3.02
637 697 2.203280 CCCGGTGCACCACAGAAA 60.203 61.111 34.16 0.00 35.86 2.52
638 698 1.826054 CCCGGTGCACCACAGAAAA 60.826 57.895 34.16 0.00 35.86 2.29
639 699 1.388065 CCCGGTGCACCACAGAAAAA 61.388 55.000 34.16 0.00 35.86 1.94
640 700 0.248866 CCGGTGCACCACAGAAAAAC 60.249 55.000 34.16 4.51 35.86 2.43
641 701 0.453793 CGGTGCACCACAGAAAAACA 59.546 50.000 34.16 0.00 35.86 2.83
642 702 1.135257 CGGTGCACCACAGAAAAACAA 60.135 47.619 34.16 0.00 35.86 2.83
643 703 2.672478 CGGTGCACCACAGAAAAACAAA 60.672 45.455 34.16 0.00 35.86 2.83
644 704 3.330267 GGTGCACCACAGAAAAACAAAA 58.670 40.909 31.23 0.00 35.86 2.44
645 705 3.370672 GGTGCACCACAGAAAAACAAAAG 59.629 43.478 31.23 0.00 35.86 2.27
646 706 3.370672 GTGCACCACAGAAAAACAAAAGG 59.629 43.478 5.22 0.00 34.08 3.11
783 849 0.841289 ACGGAAACCTTCTGGAACCA 59.159 50.000 0.62 0.00 40.42 3.67
787 853 0.179001 AAACCTTCTGGAACCACCCG 60.179 55.000 0.00 0.00 38.00 5.28
788 854 2.359975 CCTTCTGGAACCACCCGC 60.360 66.667 0.00 0.00 38.00 6.13
978 1047 3.137459 CTCCGGCGAGTCTCTGCT 61.137 66.667 9.30 0.00 0.00 4.24
979 1048 2.676822 TCCGGCGAGTCTCTGCTT 60.677 61.111 9.30 0.00 0.00 3.91
980 1049 2.507992 CCGGCGAGTCTCTGCTTG 60.508 66.667 9.30 8.56 0.00 4.01
981 1050 3.184683 CGGCGAGTCTCTGCTTGC 61.185 66.667 0.00 3.14 43.39 4.01
982 1051 3.184683 GGCGAGTCTCTGCTTGCG 61.185 66.667 13.74 0.00 44.67 4.85
983 1052 2.431601 GCGAGTCTCTGCTTGCGT 60.432 61.111 8.76 0.00 36.32 5.24
984 1053 2.724708 GCGAGTCTCTGCTTGCGTG 61.725 63.158 8.76 0.00 36.32 5.34
985 1054 2.724708 CGAGTCTCTGCTTGCGTGC 61.725 63.158 0.00 0.00 0.00 5.34
986 1055 2.724708 GAGTCTCTGCTTGCGTGCG 61.725 63.158 0.00 0.00 35.36 5.34
1488 1559 0.031314 CTGCGCGGATAGATCTGTGT 59.969 55.000 11.90 0.00 43.72 3.72
1489 1560 0.249031 TGCGCGGATAGATCTGTGTG 60.249 55.000 8.83 0.21 43.72 3.82
1503 1574 1.817941 GTGTGTGTGCCCTTCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
1508 1579 1.092921 GTGTGCCCTTCGTGTTGTCA 61.093 55.000 0.00 0.00 0.00 3.58
1589 1660 2.252976 AGCTCTGCTTATGCTTAGCC 57.747 50.000 17.86 6.61 43.59 3.93
1590 1661 1.487976 AGCTCTGCTTATGCTTAGCCA 59.512 47.619 17.86 0.00 43.59 4.75
1594 1675 4.562347 GCTCTGCTTATGCTTAGCCAGATA 60.562 45.833 9.77 0.00 39.78 1.98
1647 1728 5.425539 ACTGTAAATCTACATGTGCCTAGGT 59.574 40.000 11.31 0.00 37.41 3.08
1652 1734 4.521536 TCTACATGTGCCTAGGTCTACT 57.478 45.455 11.31 0.00 0.00 2.57
1665 1747 5.940470 CCTAGGTCTACTTGTTGCTCAAATT 59.060 40.000 0.00 0.00 35.48 1.82
1689 1771 1.956170 CTATTGCAGTAGGGCGGCG 60.956 63.158 8.32 0.51 41.25 6.46
1723 1805 3.257393 TGTTTGTTGCTTTGAATTGCGT 58.743 36.364 0.00 0.00 0.00 5.24
1739 1821 1.616865 TGCGTAGTCACCTGCTTAGTT 59.383 47.619 0.00 0.00 0.00 2.24
1741 1823 2.094649 GCGTAGTCACCTGCTTAGTTCT 60.095 50.000 0.00 0.00 0.00 3.01
1992 2143 7.129457 TCCATGATATCCCATCTTACTATGC 57.871 40.000 0.00 0.00 0.00 3.14
1997 2148 8.844865 TGATATCCCATCTTACTATGCATACT 57.155 34.615 1.16 0.00 0.00 2.12
2089 2240 0.108585 GTCTGTTTGGGAGGCAGTCA 59.891 55.000 0.00 0.00 0.00 3.41
2192 2343 8.476447 ACTACTTGCTTAATCCTAAGAAGGTAC 58.524 37.037 0.00 0.00 44.09 3.34
2196 2347 4.983538 GCTTAATCCTAAGAAGGTACGCTC 59.016 45.833 0.00 0.00 44.09 5.03
2201 2352 2.866762 CCTAAGAAGGTACGCTCATTGC 59.133 50.000 0.00 0.00 38.19 3.56
2244 2395 4.404073 AGTTCCATTTTGCTTGTGGTTGTA 59.596 37.500 0.00 0.00 34.61 2.41
2255 2406 6.707290 TGCTTGTGGTTGTATTGTACTCTAT 58.293 36.000 0.00 0.00 0.00 1.98
2293 2444 4.464069 ACTTCTGTTCTCCACTCTATGC 57.536 45.455 0.00 0.00 0.00 3.14
2310 2461 9.071276 CACTCTATGCTATCATATTTTGGGTTT 57.929 33.333 0.00 0.00 34.88 3.27
2311 2462 9.071276 ACTCTATGCTATCATATTTTGGGTTTG 57.929 33.333 0.00 0.00 34.88 2.93
2589 2775 5.058490 CCAAGCATTCCAAAACAAATCTGT 58.942 37.500 0.00 0.00 37.39 3.41
2593 2779 4.627035 GCATTCCAAAACAAATCTGTAGCC 59.373 41.667 0.00 0.00 33.45 3.93
2626 2814 7.417342 GCTGTAGTATCTGATTTCCTTCTGTCT 60.417 40.741 0.00 0.00 0.00 3.41
2627 2815 8.367660 TGTAGTATCTGATTTCCTTCTGTCTT 57.632 34.615 0.00 0.00 0.00 3.01
2634 2822 6.213397 TCTGATTTCCTTCTGTCTTATGTCCA 59.787 38.462 0.00 0.00 0.00 4.02
2635 2823 6.409704 TGATTTCCTTCTGTCTTATGTCCAG 58.590 40.000 0.00 0.00 0.00 3.86
2646 2834 3.266772 TCTTATGTCCAGATGGTTGGCTT 59.733 43.478 0.00 0.00 38.16 4.35
2677 2865 9.495572 CTTCTCTGGATTATAATTTGTACTCCC 57.504 37.037 0.00 0.00 0.00 4.30
2678 2866 8.798975 TCTCTGGATTATAATTTGTACTCCCT 57.201 34.615 0.00 0.00 0.00 4.20
2679 2867 8.871125 TCTCTGGATTATAATTTGTACTCCCTC 58.129 37.037 0.00 0.00 0.00 4.30
2680 2868 7.974504 TCTGGATTATAATTTGTACTCCCTCC 58.025 38.462 0.00 0.00 0.00 4.30
2681 2869 6.765403 TGGATTATAATTTGTACTCCCTCCG 58.235 40.000 0.00 0.00 0.00 4.63
2682 2870 6.328148 TGGATTATAATTTGTACTCCCTCCGT 59.672 38.462 0.00 0.00 0.00 4.69
2683 2871 6.872547 GGATTATAATTTGTACTCCCTCCGTC 59.127 42.308 0.00 0.00 0.00 4.79
2684 2872 7.256225 GGATTATAATTTGTACTCCCTCCGTCT 60.256 40.741 0.00 0.00 0.00 4.18
2685 2873 3.611766 AATTTGTACTCCCTCCGTCTG 57.388 47.619 0.00 0.00 0.00 3.51
2686 2874 2.297698 TTTGTACTCCCTCCGTCTGA 57.702 50.000 0.00 0.00 0.00 3.27
2687 2875 2.297698 TTGTACTCCCTCCGTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
2688 2876 2.297698 TGTACTCCCTCCGTCTGAAA 57.702 50.000 0.00 0.00 0.00 2.69
2689 2877 2.600790 TGTACTCCCTCCGTCTGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
2690 2878 2.561419 TGTACTCCCTCCGTCTGAAAAG 59.439 50.000 0.00 0.00 0.00 2.27
2691 2879 0.977395 ACTCCCTCCGTCTGAAAAGG 59.023 55.000 0.00 0.00 0.00 3.11
2692 2880 0.391793 CTCCCTCCGTCTGAAAAGGC 60.392 60.000 0.00 0.00 0.00 4.35
2693 2881 0.836400 TCCCTCCGTCTGAAAAGGCT 60.836 55.000 0.00 0.00 0.00 4.58
2694 2882 0.036875 CCCTCCGTCTGAAAAGGCTT 59.963 55.000 0.00 0.00 0.00 4.35
2695 2883 1.160137 CCTCCGTCTGAAAAGGCTTG 58.840 55.000 0.00 0.00 0.00 4.01
2696 2884 1.543429 CCTCCGTCTGAAAAGGCTTGT 60.543 52.381 0.00 0.00 0.00 3.16
2697 2885 1.801178 CTCCGTCTGAAAAGGCTTGTC 59.199 52.381 10.62 10.62 0.00 3.18
2698 2886 0.875059 CCGTCTGAAAAGGCTTGTCC 59.125 55.000 14.74 0.00 0.00 4.02
2699 2887 0.875059 CGTCTGAAAAGGCTTGTCCC 59.125 55.000 14.74 2.35 34.51 4.46
2700 2888 1.543429 CGTCTGAAAAGGCTTGTCCCT 60.543 52.381 14.74 0.00 36.58 4.20
2701 2889 2.155279 GTCTGAAAAGGCTTGTCCCTC 58.845 52.381 14.74 1.63 32.93 4.30
2702 2890 1.774254 TCTGAAAAGGCTTGTCCCTCA 59.226 47.619 14.74 5.70 32.93 3.86
2703 2891 2.174639 TCTGAAAAGGCTTGTCCCTCAA 59.825 45.455 14.74 0.00 32.93 3.02
2704 2892 2.958355 CTGAAAAGGCTTGTCCCTCAAA 59.042 45.455 14.74 0.00 35.48 2.69
2705 2893 3.575687 CTGAAAAGGCTTGTCCCTCAAAT 59.424 43.478 14.74 0.00 35.48 2.32
2706 2894 3.321682 TGAAAAGGCTTGTCCCTCAAATG 59.678 43.478 14.74 0.00 35.48 2.32
2707 2895 1.928868 AAGGCTTGTCCCTCAAATGG 58.071 50.000 0.00 0.00 35.48 3.16
2708 2896 1.075601 AGGCTTGTCCCTCAAATGGA 58.924 50.000 0.00 0.00 35.48 3.41
2709 2897 1.642762 AGGCTTGTCCCTCAAATGGAT 59.357 47.619 0.00 0.00 35.48 3.41
2710 2898 1.753073 GGCTTGTCCCTCAAATGGATG 59.247 52.381 0.00 0.00 35.48 3.51
2711 2899 2.450476 GCTTGTCCCTCAAATGGATGT 58.550 47.619 0.00 0.00 35.48 3.06
2712 2900 3.620488 GCTTGTCCCTCAAATGGATGTA 58.380 45.455 0.00 0.00 35.48 2.29
2713 2901 4.210331 GCTTGTCCCTCAAATGGATGTAT 58.790 43.478 0.00 0.00 35.48 2.29
2714 2902 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
2715 2903 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
2716 2904 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
2717 2905 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2718 2906 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2719 2907 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2720 2908 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2721 2909 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
2722 2910 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
2723 2911 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
2724 2912 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
2725 2913 3.475566 TGGATGTATCTAGCACCAAGC 57.524 47.619 0.00 0.00 46.19 4.01
2735 2923 3.179433 GCACCAAGCTTTTTCGGAC 57.821 52.632 7.51 0.00 41.15 4.79
2736 2924 0.660300 GCACCAAGCTTTTTCGGACG 60.660 55.000 7.51 0.18 41.15 4.79
2737 2925 0.040425 CACCAAGCTTTTTCGGACGG 60.040 55.000 7.51 0.84 0.00 4.79
2738 2926 0.179040 ACCAAGCTTTTTCGGACGGA 60.179 50.000 7.51 0.00 0.00 4.69
2739 2927 0.517316 CCAAGCTTTTTCGGACGGAG 59.483 55.000 0.00 0.00 0.00 4.63
2740 2928 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2741 2929 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2742 2930 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2743 2931 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2744 2932 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2745 2933 0.034337 TTTTTCGGACGGAGGGAGTG 59.966 55.000 0.00 0.00 0.00 3.51
2746 2934 1.823169 TTTTCGGACGGAGGGAGTGG 61.823 60.000 0.00 0.00 0.00 4.00
2747 2935 3.518552 TTCGGACGGAGGGAGTGGT 62.519 63.158 0.00 0.00 0.00 4.16
2748 2936 2.044650 CGGACGGAGGGAGTGGTA 60.045 66.667 0.00 0.00 0.00 3.25
2749 2937 1.455217 CGGACGGAGGGAGTGGTAT 60.455 63.158 0.00 0.00 0.00 2.73
2750 2938 1.735376 CGGACGGAGGGAGTGGTATG 61.735 65.000 0.00 0.00 0.00 2.39
2751 2939 0.686769 GGACGGAGGGAGTGGTATGT 60.687 60.000 0.00 0.00 0.00 2.29
2752 2940 1.192428 GACGGAGGGAGTGGTATGTT 58.808 55.000 0.00 0.00 0.00 2.71
2753 2941 2.381911 GACGGAGGGAGTGGTATGTTA 58.618 52.381 0.00 0.00 0.00 2.41
2754 2942 2.100418 GACGGAGGGAGTGGTATGTTAC 59.900 54.545 0.00 0.00 0.00 2.50
2755 2943 2.292061 ACGGAGGGAGTGGTATGTTACT 60.292 50.000 0.00 0.00 0.00 2.24
2756 2944 3.053395 ACGGAGGGAGTGGTATGTTACTA 60.053 47.826 0.00 0.00 0.00 1.82
2789 2977 8.748412 TCTATATGGACAGTTTTGATTTTTGGG 58.252 33.333 0.00 0.00 0.00 4.12
2829 3026 4.139786 TCCTTGATTCATATTCTGGCTGC 58.860 43.478 0.00 0.00 0.00 5.25
2832 3029 4.426736 TGATTCATATTCTGGCTGCTGA 57.573 40.909 0.00 0.00 0.00 4.26
2884 3081 0.231534 CATCAGCTTGTATGCTCGCG 59.768 55.000 0.00 0.00 41.98 5.87
2922 3119 5.491982 TGCCCTTAACATTTCTCTTCTCTC 58.508 41.667 0.00 0.00 0.00 3.20
2933 3130 8.114359 CATTTCTCTTCTCTCGAAATGTACTC 57.886 38.462 13.09 0.00 44.25 2.59
2934 3131 5.821516 TCTCTTCTCTCGAAATGTACTCC 57.178 43.478 0.00 0.00 0.00 3.85
2951 3148 6.887013 TGTACTCCTGTTAACACAAACCTTA 58.113 36.000 3.59 0.00 30.36 2.69
3019 3216 1.118965 TGAAGAAGCCACAGGACCGA 61.119 55.000 0.00 0.00 0.00 4.69
3064 3261 3.075134 AGAAAGCCACCTCCTCTTGAAAT 59.925 43.478 0.00 0.00 0.00 2.17
3066 3263 0.813821 GCCACCTCCTCTTGAAATGC 59.186 55.000 0.00 0.00 0.00 3.56
3067 3264 1.887956 GCCACCTCCTCTTGAAATGCA 60.888 52.381 0.00 0.00 0.00 3.96
3069 3266 2.892852 CCACCTCCTCTTGAAATGCAAA 59.107 45.455 0.00 0.00 35.74 3.68
3233 3430 7.827729 GGTTTCATATCACTAGGTTTAGTTGGT 59.172 37.037 0.00 0.00 38.05 3.67
3234 3431 9.880157 GTTTCATATCACTAGGTTTAGTTGGTA 57.120 33.333 0.00 0.00 38.05 3.25
3402 3638 5.294552 GCTTGTCCTATGTGTATTTCCAGTC 59.705 44.000 0.00 0.00 0.00 3.51
3403 3639 5.006153 TGTCCTATGTGTATTTCCAGTCG 57.994 43.478 0.00 0.00 0.00 4.18
3404 3640 3.802685 GTCCTATGTGTATTTCCAGTCGC 59.197 47.826 0.00 0.00 0.00 5.19
3405 3641 2.794910 CCTATGTGTATTTCCAGTCGCG 59.205 50.000 0.00 0.00 0.00 5.87
3406 3642 2.665649 ATGTGTATTTCCAGTCGCGA 57.334 45.000 3.71 3.71 0.00 5.87
3407 3643 1.705256 TGTGTATTTCCAGTCGCGAC 58.295 50.000 31.30 31.30 0.00 5.19
3408 3644 1.271379 TGTGTATTTCCAGTCGCGACT 59.729 47.619 34.98 34.98 43.61 4.18
3409 3645 2.288579 TGTGTATTTCCAGTCGCGACTT 60.289 45.455 37.66 25.22 40.20 3.01
3410 3646 2.735134 GTGTATTTCCAGTCGCGACTTT 59.265 45.455 37.66 21.36 40.20 2.66
3411 3647 3.185797 GTGTATTTCCAGTCGCGACTTTT 59.814 43.478 37.66 21.68 40.20 2.27
3412 3648 4.386652 GTGTATTTCCAGTCGCGACTTTTA 59.613 41.667 37.66 22.80 40.20 1.52
3413 3649 4.386652 TGTATTTCCAGTCGCGACTTTTAC 59.613 41.667 37.66 28.56 40.20 2.01
3414 3650 1.787012 TTCCAGTCGCGACTTTTACC 58.213 50.000 37.66 11.02 40.20 2.85
3415 3651 0.675083 TCCAGTCGCGACTTTTACCA 59.325 50.000 37.66 15.54 40.20 3.25
3416 3652 1.274167 TCCAGTCGCGACTTTTACCAT 59.726 47.619 37.66 13.47 40.20 3.55
3417 3653 2.073816 CCAGTCGCGACTTTTACCATT 58.926 47.619 37.66 12.67 40.20 3.16
3418 3654 2.159707 CCAGTCGCGACTTTTACCATTG 60.160 50.000 37.66 23.09 40.20 2.82
3419 3655 2.073816 AGTCGCGACTTTTACCATTGG 58.926 47.619 34.98 0.00 38.83 3.16
3420 3656 1.802365 GTCGCGACTTTTACCATTGGT 59.198 47.619 31.12 13.94 40.16 3.67
3421 3657 2.224784 GTCGCGACTTTTACCATTGGTT 59.775 45.455 31.12 0.00 37.09 3.67
3422 3658 2.481185 TCGCGACTTTTACCATTGGTTC 59.519 45.455 14.78 3.99 37.09 3.62
3423 3659 2.224549 CGCGACTTTTACCATTGGTTCA 59.775 45.455 14.78 0.00 37.09 3.18
3424 3660 3.666902 CGCGACTTTTACCATTGGTTCAG 60.667 47.826 14.78 9.96 37.09 3.02
3425 3661 3.252458 GCGACTTTTACCATTGGTTCAGT 59.748 43.478 14.78 13.02 37.09 3.41
3426 3662 4.783242 CGACTTTTACCATTGGTTCAGTG 58.217 43.478 14.78 4.09 37.09 3.66
3427 3663 4.320202 CGACTTTTACCATTGGTTCAGTGG 60.320 45.833 14.78 10.70 45.06 4.00
3433 3669 3.581024 CCATTGGTTCAGTGGTTGATG 57.419 47.619 0.00 0.00 36.65 3.07
3434 3670 2.231964 CCATTGGTTCAGTGGTTGATGG 59.768 50.000 0.00 0.00 36.65 3.51
3435 3671 2.746279 TTGGTTCAGTGGTTGATGGT 57.254 45.000 0.00 0.00 35.27 3.55
3436 3672 1.979855 TGGTTCAGTGGTTGATGGTG 58.020 50.000 0.00 0.00 35.27 4.17
3437 3673 0.598065 GGTTCAGTGGTTGATGGTGC 59.402 55.000 0.00 0.00 35.27 5.01
3441 3677 2.255252 GTGGTTGATGGTGCGTGC 59.745 61.111 0.00 0.00 0.00 5.34
3460 3696 5.088739 CGTGCCTTTTGCTATTTAGACTTG 58.911 41.667 0.00 0.00 42.00 3.16
3469 3705 9.787532 TTTTGCTATTTAGACTTGCATTCATAC 57.212 29.630 0.00 0.00 33.50 2.39
3471 3707 8.146479 TGCTATTTAGACTTGCATTCATACAG 57.854 34.615 0.00 0.00 0.00 2.74
3472 3708 7.770433 TGCTATTTAGACTTGCATTCATACAGT 59.230 33.333 0.00 0.00 0.00 3.55
3476 3712 9.672673 ATTTAGACTTGCATTCATACAGTAACT 57.327 29.630 0.00 0.00 0.00 2.24
3477 3713 9.502091 TTTAGACTTGCATTCATACAGTAACTT 57.498 29.630 0.00 0.00 0.00 2.66
3478 3714 7.986085 AGACTTGCATTCATACAGTAACTTT 57.014 32.000 0.00 0.00 0.00 2.66
3480 3716 8.936864 AGACTTGCATTCATACAGTAACTTTAC 58.063 33.333 0.00 0.00 0.00 2.01
3481 3717 8.615878 ACTTGCATTCATACAGTAACTTTACA 57.384 30.769 2.10 0.00 36.12 2.41
3482 3718 9.231297 ACTTGCATTCATACAGTAACTTTACAT 57.769 29.630 2.10 0.00 36.12 2.29
3485 3721 8.387354 TGCATTCATACAGTAACTTTACATTCG 58.613 33.333 2.10 0.00 36.12 3.34
3486 3722 8.388103 GCATTCATACAGTAACTTTACATTCGT 58.612 33.333 2.10 0.00 36.12 3.85
3490 3726 9.524106 TCATACAGTAACTTTACATTCGTATGG 57.476 33.333 18.63 0.00 36.60 2.74
3491 3727 9.309516 CATACAGTAACTTTACATTCGTATGGT 57.690 33.333 6.98 0.00 34.91 3.55
3493 3729 8.693542 ACAGTAACTTTACATTCGTATGGTAC 57.306 34.615 6.98 0.00 36.01 3.34
3494 3730 8.306038 ACAGTAACTTTACATTCGTATGGTACA 58.694 33.333 6.98 0.00 38.44 2.90
3531 3767 4.620184 GCGTTTTCGTATCTGTACTCTTGT 59.380 41.667 0.00 0.00 46.03 3.16
3534 3770 7.008992 GCGTTTTCGTATCTGTACTCTTGTAAT 59.991 37.037 0.00 0.00 46.03 1.89
3595 3877 6.970043 GCTCTCACAGTACAAACTATACTCTG 59.030 42.308 0.00 0.00 33.48 3.35
3639 3921 8.430801 AAATGTGAGATGATAAGCAAGTACTC 57.569 34.615 0.00 0.00 0.00 2.59
3640 3922 6.782082 TGTGAGATGATAAGCAAGTACTCT 57.218 37.500 0.00 0.00 0.00 3.24
3641 3923 6.800543 TGTGAGATGATAAGCAAGTACTCTC 58.199 40.000 0.00 0.00 0.00 3.20
3642 3924 6.378280 TGTGAGATGATAAGCAAGTACTCTCA 59.622 38.462 0.00 0.00 36.47 3.27
3643 3925 6.695278 GTGAGATGATAAGCAAGTACTCTCAC 59.305 42.308 14.78 14.78 46.20 3.51
3645 3927 6.804677 AGATGATAAGCAAGTACTCTCACAG 58.195 40.000 0.00 0.00 0.00 3.66
3646 3928 5.984695 TGATAAGCAAGTACTCTCACAGT 57.015 39.130 0.00 0.00 39.41 3.55
3647 3929 7.558081 AGATGATAAGCAAGTACTCTCACAGTA 59.442 37.037 0.00 0.00 36.43 2.74
3662 3944 8.976353 ACTCTCACAGTACATATCAGAATTTCT 58.024 33.333 0.00 0.00 31.37 2.52
3663 3945 9.247126 CTCTCACAGTACATATCAGAATTTCTG 57.753 37.037 18.49 18.49 45.59 3.02
3664 3946 7.708322 TCTCACAGTACATATCAGAATTTCTGC 59.292 37.037 19.53 5.83 43.95 4.26
3665 3947 6.476706 TCACAGTACATATCAGAATTTCTGCG 59.523 38.462 19.53 11.04 43.95 5.18
3667 3949 7.010460 CACAGTACATATCAGAATTTCTGCGAA 59.990 37.037 19.53 8.99 43.95 4.70
3669 3951 7.848051 CAGTACATATCAGAATTTCTGCGAAAC 59.152 37.037 19.53 12.56 43.95 2.78
3670 3952 6.741992 ACATATCAGAATTTCTGCGAAACA 57.258 33.333 19.53 3.94 43.95 2.83
3673 3955 5.633830 ATCAGAATTTCTGCGAAACACAT 57.366 34.783 19.53 4.69 43.95 3.21
3675 3957 5.451908 TCAGAATTTCTGCGAAACACATTC 58.548 37.500 19.53 6.48 43.95 2.67
3677 3959 5.686841 CAGAATTTCTGCGAAACACATTCAA 59.313 36.000 13.20 0.00 37.72 2.69
3678 3960 5.916883 AGAATTTCTGCGAAACACATTCAAG 59.083 36.000 0.00 0.00 37.96 3.02
3680 3962 5.743026 TTTCTGCGAAACACATTCAAGTA 57.257 34.783 0.00 0.00 37.96 2.24
3681 3963 4.725556 TCTGCGAAACACATTCAAGTAC 57.274 40.909 0.00 0.00 37.96 2.73
3682 3964 4.377021 TCTGCGAAACACATTCAAGTACT 58.623 39.130 0.00 0.00 37.96 2.73
3725 4627 7.550906 CCTAAATGTTTCCTCTCTTTCCTAGTG 59.449 40.741 0.00 0.00 0.00 2.74
3749 4651 8.756864 GTGTTCTCGGCTAGAATCTAAATTTAG 58.243 37.037 17.60 17.60 45.84 1.85
3844 5833 6.183360 ACAAAATGCTAGTTGCCTTGTAACTT 60.183 34.615 2.99 0.00 39.11 2.66
3849 5838 6.234920 TGCTAGTTGCCTTGTAACTTGAATA 58.765 36.000 9.73 0.00 39.11 1.75
3871 5860 3.959573 GCAGCTAGCAGATTTGTTAGG 57.040 47.619 18.83 0.00 44.79 2.69
3872 5861 2.615912 GCAGCTAGCAGATTTGTTAGGG 59.384 50.000 18.83 0.00 44.79 3.53
3873 5862 3.878778 CAGCTAGCAGATTTGTTAGGGT 58.121 45.455 18.83 0.00 38.24 4.34
3874 5863 3.624861 CAGCTAGCAGATTTGTTAGGGTG 59.375 47.826 18.83 0.00 38.24 4.61
3875 5864 3.519510 AGCTAGCAGATTTGTTAGGGTGA 59.480 43.478 18.83 0.00 38.24 4.02
3876 5865 3.873952 GCTAGCAGATTTGTTAGGGTGAG 59.126 47.826 10.63 0.00 38.24 3.51
3877 5866 3.356529 AGCAGATTTGTTAGGGTGAGG 57.643 47.619 0.00 0.00 0.00 3.86
3878 5867 2.025887 AGCAGATTTGTTAGGGTGAGGG 60.026 50.000 0.00 0.00 0.00 4.30
3879 5868 2.945890 GCAGATTTGTTAGGGTGAGGGG 60.946 54.545 0.00 0.00 0.00 4.79
3880 5869 2.576191 CAGATTTGTTAGGGTGAGGGGA 59.424 50.000 0.00 0.00 0.00 4.81
3881 5870 2.576648 AGATTTGTTAGGGTGAGGGGAC 59.423 50.000 0.00 0.00 0.00 4.46
3882 5871 1.822425 TTTGTTAGGGTGAGGGGACA 58.178 50.000 0.00 0.00 0.00 4.02
3883 5872 1.358152 TTGTTAGGGTGAGGGGACAG 58.642 55.000 0.00 0.00 0.00 3.51
3884 5873 0.490017 TGTTAGGGTGAGGGGACAGA 59.510 55.000 0.00 0.00 0.00 3.41
3885 5874 1.080498 TGTTAGGGTGAGGGGACAGAT 59.920 52.381 0.00 0.00 0.00 2.90
3886 5875 1.486726 GTTAGGGTGAGGGGACAGATG 59.513 57.143 0.00 0.00 0.00 2.90
3887 5876 0.031111 TAGGGTGAGGGGACAGATGG 60.031 60.000 0.00 0.00 0.00 3.51
3888 5877 2.592308 GGTGAGGGGACAGATGGC 59.408 66.667 0.00 0.00 0.00 4.40
3889 5878 2.592308 GTGAGGGGACAGATGGCC 59.408 66.667 0.00 0.00 44.61 5.36
3895 5884 3.090765 GGACAGATGGCCAACCCT 58.909 61.111 10.96 4.42 44.76 4.34
3896 5885 1.077429 GGACAGATGGCCAACCCTC 60.077 63.158 10.96 1.72 44.76 4.30
3897 5886 1.450312 GACAGATGGCCAACCCTCG 60.450 63.158 10.96 1.92 35.84 4.63
3898 5887 2.825836 CAGATGGCCAACCCTCGC 60.826 66.667 10.96 0.00 35.84 5.03
3899 5888 4.473520 AGATGGCCAACCCTCGCG 62.474 66.667 10.96 0.00 35.84 5.87
3900 5889 4.778143 GATGGCCAACCCTCGCGT 62.778 66.667 10.96 0.00 33.59 6.01
3901 5890 4.778143 ATGGCCAACCCTCGCGTC 62.778 66.667 10.96 0.00 33.59 5.19
3928 5917 3.470888 CTTGGCGACTCGGGGGAT 61.471 66.667 0.00 0.00 0.00 3.85
3929 5918 3.447025 CTTGGCGACTCGGGGGATC 62.447 68.421 0.00 0.00 0.00 3.36
3930 5919 3.976490 TTGGCGACTCGGGGGATCT 62.976 63.158 0.00 0.00 0.00 2.75
3931 5920 3.607661 GGCGACTCGGGGGATCTC 61.608 72.222 0.00 0.00 0.00 2.75
3932 5921 3.607661 GCGACTCGGGGGATCTCC 61.608 72.222 1.65 1.65 0.00 3.71
3933 5922 2.123854 CGACTCGGGGGATCTCCA 60.124 66.667 15.23 0.00 37.91 3.86
3934 5923 1.756950 CGACTCGGGGGATCTCCAA 60.757 63.158 15.23 0.00 37.91 3.53
3935 5924 1.823976 GACTCGGGGGATCTCCAAC 59.176 63.158 15.23 0.00 37.91 3.77
3936 5925 1.687297 GACTCGGGGGATCTCCAACC 61.687 65.000 15.23 0.00 37.91 3.77
3938 5927 4.547367 CGGGGGATCTCCAACCGC 62.547 72.222 15.23 2.86 45.97 5.68
3940 5929 4.191015 GGGGATCTCCAACCGCCC 62.191 72.222 6.79 0.00 37.91 6.13
3941 5930 4.191015 GGGATCTCCAACCGCCCC 62.191 72.222 0.00 0.00 37.91 5.80
3942 5931 4.191015 GGATCTCCAACCGCCCCC 62.191 72.222 0.00 0.00 35.64 5.40
3943 5932 4.547367 GATCTCCAACCGCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
3963 5952 3.470888 CTTGGCGACTCGGGGGAT 61.471 66.667 0.00 0.00 0.00 3.85
3964 5953 3.447025 CTTGGCGACTCGGGGGATC 62.447 68.421 0.00 0.00 0.00 3.36
3965 5954 3.976490 TTGGCGACTCGGGGGATCT 62.976 63.158 0.00 0.00 0.00 2.75
3966 5955 3.607661 GGCGACTCGGGGGATCTC 61.608 72.222 0.00 0.00 0.00 2.75
3967 5956 3.607661 GCGACTCGGGGGATCTCC 61.608 72.222 1.65 1.65 0.00 3.71
3968 5957 2.123854 CGACTCGGGGGATCTCCA 60.124 66.667 15.23 0.00 37.91 3.86
3969 5958 1.756950 CGACTCGGGGGATCTCCAA 60.757 63.158 15.23 0.00 37.91 3.53
3970 5959 1.823976 GACTCGGGGGATCTCCAAC 59.176 63.158 15.23 0.00 37.91 3.77
3971 5960 1.687297 GACTCGGGGGATCTCCAACC 61.687 65.000 15.23 0.00 37.91 3.77
3972 5961 2.366435 TCGGGGGATCTCCAACCC 60.366 66.667 15.23 4.54 44.89 4.11
3973 5962 2.366972 CGGGGGATCTCCAACCCT 60.367 66.667 15.23 0.00 44.97 4.34
3974 5963 1.074775 CGGGGGATCTCCAACCCTA 60.075 63.158 15.23 0.00 44.97 3.53
3975 5964 0.693092 CGGGGGATCTCCAACCCTAA 60.693 60.000 15.23 0.00 44.97 2.69
3976 5965 1.141185 GGGGGATCTCCAACCCTAAG 58.859 60.000 15.23 0.00 44.97 2.18
3977 5966 1.628327 GGGGGATCTCCAACCCTAAGT 60.628 57.143 15.23 0.00 44.97 2.24
3978 5967 2.361070 GGGGGATCTCCAACCCTAAGTA 60.361 54.545 15.23 0.00 44.97 2.24
3979 5968 2.704596 GGGGATCTCCAACCCTAAGTAC 59.295 54.545 6.79 0.00 44.97 2.73
3980 5969 2.704596 GGGATCTCCAACCCTAAGTACC 59.295 54.545 0.00 0.00 42.56 3.34
3981 5970 2.364647 GGATCTCCAACCCTAAGTACCG 59.635 54.545 0.00 0.00 35.64 4.02
3982 5971 1.188863 TCTCCAACCCTAAGTACCGC 58.811 55.000 0.00 0.00 0.00 5.68
3983 5972 0.177373 CTCCAACCCTAAGTACCGCC 59.823 60.000 0.00 0.00 0.00 6.13
3984 5973 1.153509 CCAACCCTAAGTACCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
3985 5974 1.812507 CAACCCTAAGTACCGCCGC 60.813 63.158 0.00 0.00 0.00 6.53
3986 5975 3.022710 AACCCTAAGTACCGCCGCC 62.023 63.158 0.00 0.00 0.00 6.13
3987 5976 4.580551 CCCTAAGTACCGCCGCCG 62.581 72.222 0.00 0.00 0.00 6.46
4000 5989 4.410400 CGCCGCCCTTTCCTCCTT 62.410 66.667 0.00 0.00 0.00 3.36
4001 5990 2.438614 GCCGCCCTTTCCTCCTTC 60.439 66.667 0.00 0.00 0.00 3.46
4002 5991 2.272471 CCGCCCTTTCCTCCTTCC 59.728 66.667 0.00 0.00 0.00 3.46
4003 5992 2.272471 CGCCCTTTCCTCCTTCCC 59.728 66.667 0.00 0.00 0.00 3.97
4004 5993 2.301738 CGCCCTTTCCTCCTTCCCT 61.302 63.158 0.00 0.00 0.00 4.20
4005 5994 1.853250 CGCCCTTTCCTCCTTCCCTT 61.853 60.000 0.00 0.00 0.00 3.95
4006 5995 0.033991 GCCCTTTCCTCCTTCCCTTC 60.034 60.000 0.00 0.00 0.00 3.46
4007 5996 0.626382 CCCTTTCCTCCTTCCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
4008 5997 1.675007 CCTTTCCTCCTTCCCTTCCT 58.325 55.000 0.00 0.00 0.00 3.36
4009 5998 1.996291 CCTTTCCTCCTTCCCTTCCTT 59.004 52.381 0.00 0.00 0.00 3.36
4010 5999 2.025793 CCTTTCCTCCTTCCCTTCCTTC 60.026 54.545 0.00 0.00 0.00 3.46
4011 6000 2.743131 TTCCTCCTTCCCTTCCTTCT 57.257 50.000 0.00 0.00 0.00 2.85
4012 6001 2.255770 TCCTCCTTCCCTTCCTTCTC 57.744 55.000 0.00 0.00 0.00 2.87
4013 6002 0.827368 CCTCCTTCCCTTCCTTCTCG 59.173 60.000 0.00 0.00 0.00 4.04
4014 6003 0.176910 CTCCTTCCCTTCCTTCTCGC 59.823 60.000 0.00 0.00 0.00 5.03
4015 6004 1.153549 CCTTCCCTTCCTTCTCGCG 60.154 63.158 0.00 0.00 0.00 5.87
4016 6005 1.153549 CTTCCCTTCCTTCTCGCGG 60.154 63.158 6.13 0.00 0.00 6.46
4017 6006 1.889530 CTTCCCTTCCTTCTCGCGGT 61.890 60.000 6.13 0.00 0.00 5.68
4018 6007 1.885163 TTCCCTTCCTTCTCGCGGTC 61.885 60.000 6.13 0.00 0.00 4.79
4019 6008 2.202623 CCTTCCTTCTCGCGGTCG 60.203 66.667 6.13 0.00 0.00 4.79
4020 6009 2.202623 CTTCCTTCTCGCGGTCGG 60.203 66.667 6.13 1.96 36.13 4.79
4021 6010 3.701604 CTTCCTTCTCGCGGTCGGG 62.702 68.421 6.13 4.43 37.58 5.14
4046 6035 4.803426 CAGCGGGCCTCGACAGAC 62.803 72.222 16.53 0.00 42.43 3.51
4050 6039 4.436998 GGGCCTCGACAGACGGTG 62.437 72.222 0.84 0.00 42.82 4.94
4051 6040 4.436998 GGCCTCGACAGACGGTGG 62.437 72.222 0.00 0.00 42.82 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.036475 CACGGCTCATTAGGTGCTCTAT 59.964 50.000 0.00 0.00 36.29 1.98
8 9 1.409064 CACGGCTCATTAGGTGCTCTA 59.591 52.381 0.00 0.00 36.29 2.43
13 14 1.471676 GGAGACACGGCTCATTAGGTG 60.472 57.143 1.62 0.00 36.62 4.00
16 17 0.738975 TCGGAGACACGGCTCATTAG 59.261 55.000 1.62 0.00 36.62 1.73
18 19 3.694746 TCGGAGACACGGCTCATT 58.305 55.556 1.62 0.00 36.62 2.57
33 34 1.670083 GGAACCAAAGGACCCGTCG 60.670 63.158 0.00 0.00 0.00 5.12
36 37 1.228033 AACGGAACCAAAGGACCCG 60.228 57.895 15.25 15.25 42.80 5.28
45 46 2.848691 ACATAAAACCGAACGGAACCA 58.151 42.857 20.14 2.95 38.96 3.67
48 49 5.496133 TGAAAACATAAAACCGAACGGAA 57.504 34.783 20.14 2.95 38.96 4.30
49 50 5.496133 TTGAAAACATAAAACCGAACGGA 57.504 34.783 20.14 0.00 38.96 4.69
71 72 4.021102 ACAGAACCCAAGACGAATTCAT 57.979 40.909 6.22 0.00 0.00 2.57
74 75 3.551846 ACAACAGAACCCAAGACGAATT 58.448 40.909 0.00 0.00 0.00 2.17
100 101 6.017109 GCTTGTAGAAACTCATGAAGACCAAA 60.017 38.462 0.00 0.00 0.00 3.28
101 102 5.470098 GCTTGTAGAAACTCATGAAGACCAA 59.530 40.000 0.00 0.00 0.00 3.67
111 112 5.497474 GAATAAGGGGCTTGTAGAAACTCA 58.503 41.667 0.00 0.00 0.00 3.41
123 124 3.458487 ACAACGATAAGGAATAAGGGGCT 59.542 43.478 0.00 0.00 0.00 5.19
145 146 4.758165 GTCCGTGTATGGGAAGAAAGAAAA 59.242 41.667 0.00 0.00 34.80 2.29
149 150 2.268298 CGTCCGTGTATGGGAAGAAAG 58.732 52.381 0.00 0.00 35.39 2.62
159 160 1.335597 CGCATATCACCGTCCGTGTAT 60.336 52.381 0.00 0.00 43.51 2.29
161 162 1.226859 CGCATATCACCGTCCGTGT 60.227 57.895 0.00 0.00 43.51 4.49
162 163 0.934901 CTCGCATATCACCGTCCGTG 60.935 60.000 0.00 0.00 44.50 4.94
163 164 1.099295 TCTCGCATATCACCGTCCGT 61.099 55.000 0.00 0.00 0.00 4.69
164 165 0.030235 TTCTCGCATATCACCGTCCG 59.970 55.000 0.00 0.00 0.00 4.79
169 170 1.209128 CCACGTTCTCGCATATCACC 58.791 55.000 0.00 0.00 41.18 4.02
191 192 2.558554 ATAGACCAGCACGTGCCGAC 62.559 60.000 35.51 24.63 43.38 4.79
195 196 2.540101 GTCAATATAGACCAGCACGTGC 59.460 50.000 32.79 32.79 35.39 5.34
197 198 2.686405 TCGTCAATATAGACCAGCACGT 59.314 45.455 0.00 0.00 35.07 4.49
198 199 3.349488 TCGTCAATATAGACCAGCACG 57.651 47.619 0.00 0.00 35.07 5.34
202 203 8.499162 GGATGAAAAATCGTCAATATAGACCAG 58.501 37.037 0.98 0.00 35.07 4.00
210 211 4.495679 GCAGCGGATGAAAAATCGTCAATA 60.496 41.667 0.00 0.00 0.00 1.90
213 214 1.130373 GCAGCGGATGAAAAATCGTCA 59.870 47.619 0.00 0.00 0.00 4.35
216 217 2.096496 AGAAGCAGCGGATGAAAAATCG 59.904 45.455 0.00 0.00 0.00 3.34
225 226 2.770164 AGTTTGTAGAAGCAGCGGAT 57.230 45.000 0.00 0.00 0.00 4.18
226 227 2.543777 AAGTTTGTAGAAGCAGCGGA 57.456 45.000 0.00 0.00 0.00 5.54
245 246 7.118535 GTCAGAGCAAACCTTTTTAAACCAAAA 59.881 33.333 0.00 0.00 34.26 2.44
246 247 6.592220 GTCAGAGCAAACCTTTTTAAACCAAA 59.408 34.615 0.00 0.00 0.00 3.28
259 260 1.000506 TCCACGTAGTCAGAGCAAACC 59.999 52.381 0.00 0.00 41.61 3.27
269 270 1.202313 GCATCTGGTCTCCACGTAGTC 60.202 57.143 0.00 0.00 41.61 2.59
271 272 0.248661 CGCATCTGGTCTCCACGTAG 60.249 60.000 0.00 0.00 0.00 3.51
272 273 0.678684 TCGCATCTGGTCTCCACGTA 60.679 55.000 0.00 0.00 0.00 3.57
274 275 1.517257 GTCGCATCTGGTCTCCACG 60.517 63.158 0.00 0.00 0.00 4.94
295 297 0.446616 CGGCGCGCTAGTATATCTCA 59.553 55.000 32.29 0.00 0.00 3.27
303 305 4.180946 CAGAGACGGCGCGCTAGT 62.181 66.667 32.29 29.21 0.00 2.57
304 306 4.914420 CCAGAGACGGCGCGCTAG 62.914 72.222 32.29 26.16 0.00 3.42
310 312 1.101635 TCCTACATCCAGAGACGGCG 61.102 60.000 4.80 4.80 0.00 6.46
311 313 0.671251 CTCCTACATCCAGAGACGGC 59.329 60.000 0.00 0.00 0.00 5.68
312 314 1.133761 TCCTCCTACATCCAGAGACGG 60.134 57.143 0.00 0.00 0.00 4.79
314 316 5.187967 TCTTTTTCCTCCTACATCCAGAGAC 59.812 44.000 0.00 0.00 0.00 3.36
315 317 5.187967 GTCTTTTTCCTCCTACATCCAGAGA 59.812 44.000 0.00 0.00 0.00 3.10
316 318 5.423886 GTCTTTTTCCTCCTACATCCAGAG 58.576 45.833 0.00 0.00 0.00 3.35
317 319 4.081642 CGTCTTTTTCCTCCTACATCCAGA 60.082 45.833 0.00 0.00 0.00 3.86
318 320 4.184629 CGTCTTTTTCCTCCTACATCCAG 58.815 47.826 0.00 0.00 0.00 3.86
319 321 3.581332 ACGTCTTTTTCCTCCTACATCCA 59.419 43.478 0.00 0.00 0.00 3.41
325 330 4.141892 TGTGTTGACGTCTTTTTCCTCCTA 60.142 41.667 17.92 0.00 0.00 2.94
340 345 3.068024 TCCAAAGCCTTGAATGTGTTGAC 59.932 43.478 0.00 0.00 34.14 3.18
380 385 9.159254 AGGTCCTTACAATCATACTCATCATAA 57.841 33.333 0.00 0.00 0.00 1.90
429 435 3.375699 TCTTTTGTGTAAAAAGGGCCCA 58.624 40.909 27.56 0.00 35.50 5.36
433 439 7.313951 TGCAATTTCTTTTGTGTAAAAAGGG 57.686 32.000 9.90 0.00 35.50 3.95
543 549 1.202114 GTGTCCGTTCGTGGGTGTATA 59.798 52.381 0.00 0.00 0.00 1.47
579 596 0.753262 GTGCACCGGGTCTATCAGAT 59.247 55.000 5.22 0.00 0.00 2.90
580 597 1.327690 GGTGCACCGGGTCTATCAGA 61.328 60.000 22.49 0.00 0.00 3.27
581 598 1.144057 GGTGCACCGGGTCTATCAG 59.856 63.158 22.49 0.00 0.00 2.90
605 665 3.119955 GCACCGGGTCTTTATTCTGTTTC 60.120 47.826 6.32 0.00 0.00 2.78
614 674 1.071814 GTGGTGCACCGGGTCTTTA 59.928 57.895 30.07 7.85 39.43 1.85
617 677 3.941188 CTGTGGTGCACCGGGTCT 61.941 66.667 30.07 0.00 39.43 3.85
618 678 2.951475 TTTCTGTGGTGCACCGGGTC 62.951 60.000 30.07 19.59 39.43 4.46
619 679 2.559922 TTTTCTGTGGTGCACCGGGT 62.560 55.000 30.07 0.00 39.43 5.28
620 680 1.388065 TTTTTCTGTGGTGCACCGGG 61.388 55.000 30.07 21.20 39.43 5.73
621 681 0.248866 GTTTTTCTGTGGTGCACCGG 60.249 55.000 30.07 21.54 39.43 5.28
622 682 0.453793 TGTTTTTCTGTGGTGCACCG 59.546 50.000 30.07 16.70 39.43 4.94
623 683 2.663826 TTGTTTTTCTGTGGTGCACC 57.336 45.000 29.67 29.67 32.73 5.01
624 684 3.370672 CCTTTTGTTTTTCTGTGGTGCAC 59.629 43.478 8.80 8.80 34.56 4.57
625 685 3.259374 TCCTTTTGTTTTTCTGTGGTGCA 59.741 39.130 0.00 0.00 0.00 4.57
626 686 3.855858 TCCTTTTGTTTTTCTGTGGTGC 58.144 40.909 0.00 0.00 0.00 5.01
627 687 5.576774 GTCTTCCTTTTGTTTTTCTGTGGTG 59.423 40.000 0.00 0.00 0.00 4.17
628 688 5.337250 GGTCTTCCTTTTGTTTTTCTGTGGT 60.337 40.000 0.00 0.00 0.00 4.16
629 689 5.109210 GGTCTTCCTTTTGTTTTTCTGTGG 58.891 41.667 0.00 0.00 0.00 4.17
630 690 5.109210 GGGTCTTCCTTTTGTTTTTCTGTG 58.891 41.667 0.00 0.00 0.00 3.66
631 691 4.142249 CGGGTCTTCCTTTTGTTTTTCTGT 60.142 41.667 0.00 0.00 0.00 3.41
632 692 4.359706 CGGGTCTTCCTTTTGTTTTTCTG 58.640 43.478 0.00 0.00 0.00 3.02
633 693 3.383505 CCGGGTCTTCCTTTTGTTTTTCT 59.616 43.478 0.00 0.00 0.00 2.52
634 694 3.131577 ACCGGGTCTTCCTTTTGTTTTTC 59.868 43.478 6.32 0.00 0.00 2.29
635 695 3.101437 ACCGGGTCTTCCTTTTGTTTTT 58.899 40.909 6.32 0.00 0.00 1.94
636 696 2.691526 GACCGGGTCTTCCTTTTGTTTT 59.308 45.455 19.92 0.00 0.00 2.43
637 697 2.304092 GACCGGGTCTTCCTTTTGTTT 58.696 47.619 19.92 0.00 0.00 2.83
638 698 1.478105 GGACCGGGTCTTCCTTTTGTT 60.478 52.381 25.39 0.00 32.47 2.83
639 699 0.109913 GGACCGGGTCTTCCTTTTGT 59.890 55.000 25.39 0.00 32.47 2.83
640 700 0.109723 TGGACCGGGTCTTCCTTTTG 59.890 55.000 25.39 0.00 32.55 2.44
641 701 0.109913 GTGGACCGGGTCTTCCTTTT 59.890 55.000 25.39 0.00 32.55 2.27
642 702 1.759236 GTGGACCGGGTCTTCCTTT 59.241 57.895 25.39 0.00 32.55 3.11
643 703 2.580601 CGTGGACCGGGTCTTCCTT 61.581 63.158 25.39 0.00 32.55 3.36
644 704 2.995574 CGTGGACCGGGTCTTCCT 60.996 66.667 25.39 0.00 32.55 3.36
741 806 4.079443 TGTCTTGGAGGGAAAGAAAGGAAA 60.079 41.667 0.00 0.00 35.50 3.13
783 849 1.152922 TGTTTCGGGAAAAGCGGGT 60.153 52.632 0.00 0.00 31.33 5.28
787 853 1.663739 GGGGTGTTTCGGGAAAAGC 59.336 57.895 0.00 0.00 31.33 3.51
788 854 1.520600 CGGGGGTGTTTCGGGAAAAG 61.521 60.000 0.00 0.00 31.33 2.27
875 941 3.869246 GGAATGTGTTGTATAGACCGGTG 59.131 47.826 14.63 0.00 0.00 4.94
1003 1072 0.684805 GGAGCCTCGGAGAAGGAAGA 60.685 60.000 6.58 0.00 34.09 2.87
1488 1559 1.078072 ACAACACGAAGGGCACACA 60.078 52.632 0.00 0.00 0.00 3.72
1489 1560 1.092921 TGACAACACGAAGGGCACAC 61.093 55.000 0.00 0.00 0.00 3.82
1503 1574 1.893137 TCTAAGCGCTCCTTCTGACAA 59.107 47.619 12.06 0.00 34.95 3.18
1508 1579 2.383855 ACAGATCTAAGCGCTCCTTCT 58.616 47.619 12.06 8.38 34.95 2.85
1513 1584 0.574454 CGCAACAGATCTAAGCGCTC 59.426 55.000 12.06 0.00 41.95 5.03
1589 1660 5.053145 CCAGAAGTCGGGAAGAAATATCTG 58.947 45.833 0.00 0.00 35.59 2.90
1590 1661 4.717280 ACCAGAAGTCGGGAAGAAATATCT 59.283 41.667 4.38 0.00 34.32 1.98
1594 1675 2.876079 GCACCAGAAGTCGGGAAGAAAT 60.876 50.000 4.38 0.00 35.12 2.17
1647 1728 6.712095 AGATCACAATTTGAGCAACAAGTAGA 59.288 34.615 2.79 0.00 43.63 2.59
1652 1734 6.587226 GCAATAGATCACAATTTGAGCAACAA 59.413 34.615 2.79 0.00 43.63 2.83
1665 1747 2.224042 CGCCCTACTGCAATAGATCACA 60.224 50.000 3.20 0.00 0.00 3.58
1689 1771 1.154225 CAAACAATCGCGGAGGCAC 60.154 57.895 6.13 0.00 39.92 5.01
1723 1805 6.040616 GCCTAATAGAACTAAGCAGGTGACTA 59.959 42.308 0.00 0.00 40.21 2.59
1739 1821 1.126488 AGCAGCAGCAGCCTAATAGA 58.874 50.000 6.10 0.00 45.49 1.98
1741 1823 0.543277 ACAGCAGCAGCAGCCTAATA 59.457 50.000 6.10 0.00 45.49 0.98
1923 2047 2.496070 AGGAGACACTGCGCTACATAAA 59.504 45.455 9.73 0.00 0.00 1.40
1992 2143 9.499479 AAACCTTCTATCATATGCTCAAGTATG 57.501 33.333 0.00 0.00 0.00 2.39
1997 2148 8.461222 CAACAAAACCTTCTATCATATGCTCAA 58.539 33.333 0.00 0.00 0.00 3.02
2196 2347 7.601073 TCTGAAGTAATGTAAGTGAGCAATG 57.399 36.000 0.00 0.00 0.00 2.82
2201 2352 7.872993 TGGAACTTCTGAAGTAATGTAAGTGAG 59.127 37.037 22.30 0.00 41.91 3.51
2231 2382 4.968259 AGAGTACAATACAACCACAAGCA 58.032 39.130 0.00 0.00 0.00 3.91
2232 2383 8.712285 TTATAGAGTACAATACAACCACAAGC 57.288 34.615 0.00 0.00 0.00 4.01
2244 2395 8.037758 GCTATCACAGGCATTATAGAGTACAAT 58.962 37.037 0.00 0.00 0.00 2.71
2255 2406 4.877823 CAGAAGTTGCTATCACAGGCATTA 59.122 41.667 0.00 0.00 38.30 1.90
2293 2444 6.966534 AGGAGCAAACCCAAAATATGATAG 57.033 37.500 0.00 0.00 0.00 2.08
2356 2509 8.369424 TCTATACAGTTTTGTAAGCCAGTACAA 58.631 33.333 0.00 2.08 42.72 2.41
2363 2516 6.986904 AGCTTCTATACAGTTTTGTAAGCC 57.013 37.500 0.00 0.00 42.26 4.35
2392 2545 8.526978 CCTAGATTATGCATACACTAGTGACAT 58.473 37.037 29.30 23.82 0.00 3.06
2393 2546 7.039714 CCCTAGATTATGCATACACTAGTGACA 60.040 40.741 29.30 19.49 0.00 3.58
2547 2701 6.006449 GCTTGGATTGGATAGTGGAATATGT 58.994 40.000 0.00 0.00 0.00 2.29
2626 2814 3.737559 AAGCCAACCATCTGGACATAA 57.262 42.857 2.55 0.00 38.96 1.90
2627 2815 3.245229 ACAAAGCCAACCATCTGGACATA 60.245 43.478 2.55 0.00 38.96 2.29
2634 2822 3.823304 GAGAAGAACAAAGCCAACCATCT 59.177 43.478 0.00 0.00 0.00 2.90
2635 2823 3.823304 AGAGAAGAACAAAGCCAACCATC 59.177 43.478 0.00 0.00 0.00 3.51
2675 2863 0.036875 AAGCCTTTTCAGACGGAGGG 59.963 55.000 0.00 0.00 0.00 4.30
2676 2864 1.160137 CAAGCCTTTTCAGACGGAGG 58.840 55.000 0.00 0.00 0.00 4.30
2677 2865 1.801178 GACAAGCCTTTTCAGACGGAG 59.199 52.381 0.00 0.00 0.00 4.63
2678 2866 1.542547 GGACAAGCCTTTTCAGACGGA 60.543 52.381 0.00 0.00 0.00 4.69
2679 2867 0.875059 GGACAAGCCTTTTCAGACGG 59.125 55.000 0.00 0.00 0.00 4.79
2680 2868 0.875059 GGGACAAGCCTTTTCAGACG 59.125 55.000 0.00 0.00 36.66 4.18
2681 2869 2.155279 GAGGGACAAGCCTTTTCAGAC 58.845 52.381 0.00 0.00 36.66 3.51
2682 2870 1.774254 TGAGGGACAAGCCTTTTCAGA 59.226 47.619 0.00 0.00 36.66 3.27
2683 2871 2.276732 TGAGGGACAAGCCTTTTCAG 57.723 50.000 0.00 0.00 36.66 3.02
2684 2872 2.746279 TTGAGGGACAAGCCTTTTCA 57.254 45.000 0.00 0.00 36.66 2.69
2685 2873 3.306294 CCATTTGAGGGACAAGCCTTTTC 60.306 47.826 0.00 0.00 39.77 2.29
2686 2874 2.634453 CCATTTGAGGGACAAGCCTTTT 59.366 45.455 0.00 0.00 39.77 2.27
2687 2875 2.158325 TCCATTTGAGGGACAAGCCTTT 60.158 45.455 0.00 0.00 39.77 3.11
2688 2876 1.428912 TCCATTTGAGGGACAAGCCTT 59.571 47.619 0.00 0.00 39.77 4.35
2689 2877 1.075601 TCCATTTGAGGGACAAGCCT 58.924 50.000 0.00 0.00 39.77 4.58
2690 2878 1.753073 CATCCATTTGAGGGACAAGCC 59.247 52.381 0.00 0.00 39.77 4.35
2691 2879 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2692 2880 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2693 2881 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2694 2882 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2695 2883 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2696 2884 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2697 2885 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2698 2886 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2699 2887 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
2700 2888 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
2701 2889 5.278169 GCTTGGTGCTAGATACATCCATTTG 60.278 44.000 0.00 0.00 38.95 2.32
2702 2890 4.823989 GCTTGGTGCTAGATACATCCATTT 59.176 41.667 0.00 0.00 38.95 2.32
2703 2891 4.392940 GCTTGGTGCTAGATACATCCATT 58.607 43.478 0.00 0.00 38.95 3.16
2704 2892 4.013267 GCTTGGTGCTAGATACATCCAT 57.987 45.455 0.00 0.00 38.95 3.41
2705 2893 3.475566 GCTTGGTGCTAGATACATCCA 57.524 47.619 0.00 0.00 38.95 3.41
2717 2905 0.660300 CGTCCGAAAAAGCTTGGTGC 60.660 55.000 0.00 0.00 43.29 5.01
2718 2906 0.040425 CCGTCCGAAAAAGCTTGGTG 60.040 55.000 0.00 0.00 0.00 4.17
2719 2907 0.179040 TCCGTCCGAAAAAGCTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
2720 2908 0.517316 CTCCGTCCGAAAAAGCTTGG 59.483 55.000 0.00 0.00 0.00 3.61
2721 2909 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2722 2910 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2723 2911 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2724 2912 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2725 2913 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2726 2914 0.034337 CACTCCCTCCGTCCGAAAAA 59.966 55.000 0.00 0.00 0.00 1.94
2727 2915 1.669440 CACTCCCTCCGTCCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
2728 2916 2.280552 CCACTCCCTCCGTCCGAAA 61.281 63.158 0.00 0.00 0.00 3.46
2729 2917 2.141011 TACCACTCCCTCCGTCCGAA 62.141 60.000 0.00 0.00 0.00 4.30
2730 2918 1.929860 ATACCACTCCCTCCGTCCGA 61.930 60.000 0.00 0.00 0.00 4.55
2731 2919 1.455217 ATACCACTCCCTCCGTCCG 60.455 63.158 0.00 0.00 0.00 4.79
2732 2920 0.686769 ACATACCACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
2733 2921 1.192428 AACATACCACTCCCTCCGTC 58.808 55.000 0.00 0.00 0.00 4.79
2734 2922 2.105766 GTAACATACCACTCCCTCCGT 58.894 52.381 0.00 0.00 0.00 4.69
2735 2923 2.385803 AGTAACATACCACTCCCTCCG 58.614 52.381 0.00 0.00 0.00 4.63
2736 2924 4.544683 ACTAGTAACATACCACTCCCTCC 58.455 47.826 0.00 0.00 0.00 4.30
2737 2925 7.836479 AATACTAGTAACATACCACTCCCTC 57.164 40.000 6.70 0.00 0.00 4.30
2738 2926 9.531158 GATAATACTAGTAACATACCACTCCCT 57.469 37.037 6.70 0.00 0.00 4.20
2739 2927 9.531158 AGATAATACTAGTAACATACCACTCCC 57.469 37.037 6.70 0.00 0.00 4.30
2829 3026 4.463891 AGGCAAAACCATTTATCAGGTCAG 59.536 41.667 0.00 0.00 43.14 3.51
2832 3029 4.837860 TCAAGGCAAAACCATTTATCAGGT 59.162 37.500 0.00 0.00 43.14 4.00
2884 3081 2.716217 AGGGCATGCTAAGAACTGAAC 58.284 47.619 18.92 0.00 0.00 3.18
2922 3119 6.533819 TTGTGTTAACAGGAGTACATTTCG 57.466 37.500 8.98 0.00 37.67 3.46
2932 3129 9.016438 GGAATAATAAGGTTTGTGTTAACAGGA 57.984 33.333 8.98 0.00 37.67 3.86
2933 3130 8.248253 GGGAATAATAAGGTTTGTGTTAACAGG 58.752 37.037 8.98 0.00 37.67 4.00
2934 3131 8.798402 TGGGAATAATAAGGTTTGTGTTAACAG 58.202 33.333 8.98 0.00 37.67 3.16
2951 3148 5.771666 CAGGAATGTACTGCATGGGAATAAT 59.228 40.000 0.00 0.00 37.96 1.28
3019 3216 1.759445 AGGTACGCAATGAGATCAGCT 59.241 47.619 0.00 0.00 0.00 4.24
3064 3261 5.826208 ACAAGATCATAGCATCATCTTTGCA 59.174 36.000 0.00 0.00 42.62 4.08
3066 3263 7.492352 TGACAAGATCATAGCATCATCTTTG 57.508 36.000 0.00 0.00 35.16 2.77
3067 3264 7.175119 CCATGACAAGATCATAGCATCATCTTT 59.825 37.037 0.00 0.00 46.96 2.52
3069 3266 6.174049 CCATGACAAGATCATAGCATCATCT 58.826 40.000 0.00 0.00 46.96 2.90
3402 3638 2.224549 TGAACCAATGGTAAAAGTCGCG 59.775 45.455 4.88 0.00 33.12 5.87
3403 3639 3.252458 ACTGAACCAATGGTAAAAGTCGC 59.748 43.478 4.88 0.00 33.12 5.19
3404 3640 4.320202 CCACTGAACCAATGGTAAAAGTCG 60.320 45.833 4.88 0.00 33.12 4.18
3405 3641 4.583073 ACCACTGAACCAATGGTAAAAGTC 59.417 41.667 4.88 0.00 45.04 3.01
3406 3642 4.542697 ACCACTGAACCAATGGTAAAAGT 58.457 39.130 4.88 7.05 45.04 2.66
3407 3643 5.068460 TCAACCACTGAACCAATGGTAAAAG 59.932 40.000 4.88 6.37 46.18 2.27
3408 3644 4.956700 TCAACCACTGAACCAATGGTAAAA 59.043 37.500 4.88 0.00 46.18 1.52
3409 3645 4.537751 TCAACCACTGAACCAATGGTAAA 58.462 39.130 4.88 0.00 46.18 2.01
3410 3646 4.171878 TCAACCACTGAACCAATGGTAA 57.828 40.909 4.88 0.00 46.18 2.85
3411 3647 3.866703 TCAACCACTGAACCAATGGTA 57.133 42.857 4.88 0.00 46.18 3.25
3413 3649 2.231964 CCATCAACCACTGAACCAATGG 59.768 50.000 0.00 0.00 37.67 3.16
3414 3650 2.892852 ACCATCAACCACTGAACCAATG 59.107 45.455 0.00 0.00 37.67 2.82
3415 3651 2.892852 CACCATCAACCACTGAACCAAT 59.107 45.455 0.00 0.00 37.67 3.16
3416 3652 2.305928 CACCATCAACCACTGAACCAA 58.694 47.619 0.00 0.00 37.67 3.67
3417 3653 1.979855 CACCATCAACCACTGAACCA 58.020 50.000 0.00 0.00 37.67 3.67
3418 3654 0.598065 GCACCATCAACCACTGAACC 59.402 55.000 0.00 0.00 37.67 3.62
3419 3655 0.238289 CGCACCATCAACCACTGAAC 59.762 55.000 0.00 0.00 37.67 3.18
3420 3656 0.179032 ACGCACCATCAACCACTGAA 60.179 50.000 0.00 0.00 37.67 3.02
3421 3657 0.884259 CACGCACCATCAACCACTGA 60.884 55.000 0.00 0.00 38.81 3.41
3422 3658 1.575922 CACGCACCATCAACCACTG 59.424 57.895 0.00 0.00 0.00 3.66
3423 3659 2.260869 GCACGCACCATCAACCACT 61.261 57.895 0.00 0.00 0.00 4.00
3424 3660 2.255252 GCACGCACCATCAACCAC 59.745 61.111 0.00 0.00 0.00 4.16
3425 3661 2.974692 AAGGCACGCACCATCAACCA 62.975 55.000 0.00 0.00 0.00 3.67
3426 3662 1.805428 AAAGGCACGCACCATCAACC 61.805 55.000 0.00 0.00 0.00 3.77
3427 3663 0.031994 AAAAGGCACGCACCATCAAC 59.968 50.000 0.00 0.00 0.00 3.18
3428 3664 0.031857 CAAAAGGCACGCACCATCAA 59.968 50.000 0.00 0.00 0.00 2.57
3429 3665 1.659233 CAAAAGGCACGCACCATCA 59.341 52.632 0.00 0.00 0.00 3.07
3430 3666 1.734117 GCAAAAGGCACGCACCATC 60.734 57.895 0.00 0.00 43.97 3.51
3431 3667 2.339712 GCAAAAGGCACGCACCAT 59.660 55.556 0.00 0.00 43.97 3.55
3441 3677 7.315142 TGAATGCAAGTCTAAATAGCAAAAGG 58.685 34.615 0.00 0.00 38.85 3.11
3460 3696 8.388103 ACGAATGTAAAGTTACTGTATGAATGC 58.612 33.333 0.00 0.00 34.77 3.56
3469 3705 8.692110 TGTACCATACGAATGTAAAGTTACTG 57.308 34.615 0.00 0.00 33.44 2.74
3476 3712 9.748708 GGTTACTATGTACCATACGAATGTAAA 57.251 33.333 0.00 0.00 33.44 2.01
3477 3713 9.135189 AGGTTACTATGTACCATACGAATGTAA 57.865 33.333 0.00 0.00 36.87 2.41
3478 3714 8.570488 CAGGTTACTATGTACCATACGAATGTA 58.430 37.037 0.00 0.00 36.87 2.29
3479 3715 7.069085 ACAGGTTACTATGTACCATACGAATGT 59.931 37.037 0.00 0.00 36.87 2.71
3480 3716 7.381408 CACAGGTTACTATGTACCATACGAATG 59.619 40.741 0.00 0.00 36.87 2.67
3481 3717 7.431249 CACAGGTTACTATGTACCATACGAAT 58.569 38.462 0.00 0.00 36.87 3.34
3482 3718 6.183360 CCACAGGTTACTATGTACCATACGAA 60.183 42.308 0.00 0.00 36.87 3.85
3483 3719 5.300034 CCACAGGTTACTATGTACCATACGA 59.700 44.000 0.00 0.00 36.87 3.43
3484 3720 5.508489 CCCACAGGTTACTATGTACCATACG 60.508 48.000 0.00 0.00 36.87 3.06
3485 3721 5.741093 GCCCACAGGTTACTATGTACCATAC 60.741 48.000 0.00 0.00 36.87 2.39
3486 3722 4.345837 GCCCACAGGTTACTATGTACCATA 59.654 45.833 0.00 0.00 36.87 2.74
3487 3723 3.135895 GCCCACAGGTTACTATGTACCAT 59.864 47.826 0.00 0.00 36.87 3.55
3488 3724 2.502538 GCCCACAGGTTACTATGTACCA 59.497 50.000 0.00 0.00 36.87 3.25
3489 3725 2.482490 CGCCCACAGGTTACTATGTACC 60.482 54.545 0.00 0.00 34.57 3.34
3490 3726 2.167075 ACGCCCACAGGTTACTATGTAC 59.833 50.000 0.00 0.00 34.57 2.90
3491 3727 2.459644 ACGCCCACAGGTTACTATGTA 58.540 47.619 0.00 0.00 34.57 2.29
3492 3728 1.272807 ACGCCCACAGGTTACTATGT 58.727 50.000 0.00 0.00 34.57 2.29
3493 3729 2.396590 AACGCCCACAGGTTACTATG 57.603 50.000 0.00 0.00 34.57 2.23
3494 3730 3.340928 GAAAACGCCCACAGGTTACTAT 58.659 45.455 0.00 0.00 34.57 2.12
3546 3783 5.866633 CACTGGTTACTTCTCTTGTCAGATC 59.133 44.000 0.00 0.00 0.00 2.75
3553 3790 4.241681 GAGAGCACTGGTTACTTCTCTTG 58.758 47.826 0.00 0.00 31.77 3.02
3618 3900 6.800543 TGAGAGTACTTGCTTATCATCTCAC 58.199 40.000 0.00 0.00 37.58 3.51
3650 3932 7.094848 TGAATGTGTTTCGCAGAAATTCTGATA 60.095 33.333 25.54 10.03 45.90 2.15
3651 3933 6.294120 TGAATGTGTTTCGCAGAAATTCTGAT 60.294 34.615 25.54 5.56 45.90 2.90
3652 3934 5.008514 TGAATGTGTTTCGCAGAAATTCTGA 59.991 36.000 25.54 3.72 45.90 3.27
3653 3935 5.214417 TGAATGTGTTTCGCAGAAATTCTG 58.786 37.500 18.02 18.02 45.90 3.02
3654 3936 5.437289 TGAATGTGTTTCGCAGAAATTCT 57.563 34.783 6.93 0.00 45.90 2.40
3655 3937 5.687285 ACTTGAATGTGTTTCGCAGAAATTC 59.313 36.000 6.93 7.27 45.90 2.17
3656 3938 5.591099 ACTTGAATGTGTTTCGCAGAAATT 58.409 33.333 6.93 0.00 45.90 1.82
3657 3939 5.186996 ACTTGAATGTGTTTCGCAGAAAT 57.813 34.783 6.93 0.00 45.90 2.17
3659 3941 4.814234 AGTACTTGAATGTGTTTCGCAGAA 59.186 37.500 0.00 0.00 45.90 3.02
3660 3942 4.377021 AGTACTTGAATGTGTTTCGCAGA 58.623 39.130 0.00 0.00 37.13 4.26
3661 3943 4.732285 AGTACTTGAATGTGTTTCGCAG 57.268 40.909 0.00 0.00 37.13 5.18
3662 3944 6.606234 TTAAGTACTTGAATGTGTTTCGCA 57.394 33.333 18.56 0.00 37.13 5.10
3663 3945 8.417176 CAAATTAAGTACTTGAATGTGTTTCGC 58.583 33.333 18.56 0.00 37.13 4.70
3664 3946 9.658475 TCAAATTAAGTACTTGAATGTGTTTCG 57.342 29.630 18.56 3.48 37.13 3.46
3709 4604 4.011023 CGAGAACACTAGGAAAGAGAGGA 58.989 47.826 0.00 0.00 0.00 3.71
3725 4627 8.874744 ACTAAATTTAGATTCTAGCCGAGAAC 57.125 34.615 27.92 0.00 39.25 3.01
3772 4674 9.364989 TGTTCTTGTTTTTAGTTCATTTTCAGG 57.635 29.630 0.00 0.00 0.00 3.86
3844 5833 4.132336 CAAATCTGCTAGCTGCCTATTCA 58.868 43.478 17.23 0.00 42.00 2.57
3849 5838 2.503895 AACAAATCTGCTAGCTGCCT 57.496 45.000 17.23 3.58 42.00 4.75
3853 5842 3.519510 TCACCCTAACAAATCTGCTAGCT 59.480 43.478 17.23 0.00 0.00 3.32
3869 5858 1.307343 CCATCTGTCCCCTCACCCT 60.307 63.158 0.00 0.00 0.00 4.34
3870 5859 3.049080 GCCATCTGTCCCCTCACCC 62.049 68.421 0.00 0.00 0.00 4.61
3871 5860 2.592308 GCCATCTGTCCCCTCACC 59.408 66.667 0.00 0.00 0.00 4.02
3872 5861 1.852157 TTGGCCATCTGTCCCCTCAC 61.852 60.000 6.09 0.00 0.00 3.51
3873 5862 1.541118 TTGGCCATCTGTCCCCTCA 60.541 57.895 6.09 0.00 0.00 3.86
3874 5863 1.077429 GTTGGCCATCTGTCCCCTC 60.077 63.158 6.09 0.00 0.00 4.30
3875 5864 2.616458 GGTTGGCCATCTGTCCCCT 61.616 63.158 6.09 0.00 34.09 4.79
3876 5865 2.043953 GGTTGGCCATCTGTCCCC 60.044 66.667 6.09 0.00 34.09 4.81
3877 5866 2.043953 GGGTTGGCCATCTGTCCC 60.044 66.667 6.09 10.40 36.17 4.46
3878 5867 1.077429 GAGGGTTGGCCATCTGTCC 60.077 63.158 6.09 2.52 41.97 4.02
3879 5868 1.450312 CGAGGGTTGGCCATCTGTC 60.450 63.158 6.09 6.09 42.97 3.51
3880 5869 2.671070 CGAGGGTTGGCCATCTGT 59.329 61.111 6.09 0.00 42.97 3.41
3881 5870 2.825836 GCGAGGGTTGGCCATCTG 60.826 66.667 6.09 0.00 42.97 2.90
3882 5871 4.473520 CGCGAGGGTTGGCCATCT 62.474 66.667 6.09 4.63 42.97 2.90
3883 5872 4.778143 ACGCGAGGGTTGGCCATC 62.778 66.667 15.93 5.53 41.81 3.51
3884 5873 4.778143 GACGCGAGGGTTGGCCAT 62.778 66.667 15.93 0.00 36.17 4.40
3911 5900 3.447025 GATCCCCCGAGTCGCCAAG 62.447 68.421 7.12 0.00 0.00 3.61
3912 5901 3.467226 GATCCCCCGAGTCGCCAA 61.467 66.667 7.12 0.00 0.00 4.52
3913 5902 4.458829 AGATCCCCCGAGTCGCCA 62.459 66.667 7.12 0.00 0.00 5.69
3914 5903 3.607661 GAGATCCCCCGAGTCGCC 61.608 72.222 7.12 0.00 0.00 5.54
3915 5904 3.607661 GGAGATCCCCCGAGTCGC 61.608 72.222 7.12 0.00 0.00 5.19
3916 5905 1.756950 TTGGAGATCCCCCGAGTCG 60.757 63.158 5.29 5.29 34.29 4.18
3917 5906 1.687297 GGTTGGAGATCCCCCGAGTC 61.687 65.000 0.00 0.00 34.29 3.36
3918 5907 1.689582 GGTTGGAGATCCCCCGAGT 60.690 63.158 0.00 0.00 34.29 4.18
3919 5908 2.797278 CGGTTGGAGATCCCCCGAG 61.797 68.421 17.64 0.00 46.33 4.63
3920 5909 2.762459 CGGTTGGAGATCCCCCGA 60.762 66.667 17.64 1.06 46.33 5.14
3921 5910 4.547367 GCGGTTGGAGATCCCCCG 62.547 72.222 18.02 18.02 46.23 5.73
3922 5911 4.191015 GGCGGTTGGAGATCCCCC 62.191 72.222 0.00 0.00 34.29 5.40
3923 5912 4.191015 GGGCGGTTGGAGATCCCC 62.191 72.222 0.00 0.00 34.29 4.81
3924 5913 4.191015 GGGGCGGTTGGAGATCCC 62.191 72.222 0.00 0.00 36.25 3.85
3925 5914 4.191015 GGGGGCGGTTGGAGATCC 62.191 72.222 0.00 0.00 0.00 3.36
3926 5915 4.547367 CGGGGGCGGTTGGAGATC 62.547 72.222 0.00 0.00 0.00 2.75
3946 5935 3.447025 GATCCCCCGAGTCGCCAAG 62.447 68.421 7.12 0.00 0.00 3.61
3947 5936 3.467226 GATCCCCCGAGTCGCCAA 61.467 66.667 7.12 0.00 0.00 4.52
3948 5937 4.458829 AGATCCCCCGAGTCGCCA 62.459 66.667 7.12 0.00 0.00 5.69
3949 5938 3.607661 GAGATCCCCCGAGTCGCC 61.608 72.222 7.12 0.00 0.00 5.54
3950 5939 3.607661 GGAGATCCCCCGAGTCGC 61.608 72.222 7.12 0.00 0.00 5.19
3951 5940 1.756950 TTGGAGATCCCCCGAGTCG 60.757 63.158 5.29 5.29 34.29 4.18
3952 5941 1.687297 GGTTGGAGATCCCCCGAGTC 61.687 65.000 0.00 0.00 34.29 3.36
3953 5942 1.689582 GGTTGGAGATCCCCCGAGT 60.690 63.158 0.00 0.00 34.29 4.18
3954 5943 2.444256 GGGTTGGAGATCCCCCGAG 61.444 68.421 0.00 0.00 37.89 4.63
3955 5944 1.596006 TAGGGTTGGAGATCCCCCGA 61.596 60.000 7.36 0.85 44.40 5.14
3956 5945 0.693092 TTAGGGTTGGAGATCCCCCG 60.693 60.000 7.36 0.00 44.40 5.73
3957 5946 1.141185 CTTAGGGTTGGAGATCCCCC 58.859 60.000 5.31 5.31 44.40 5.40
3958 5947 1.894699 ACTTAGGGTTGGAGATCCCC 58.105 55.000 0.00 0.00 44.40 4.81
3959 5948 2.704596 GGTACTTAGGGTTGGAGATCCC 59.295 54.545 0.00 0.00 43.71 3.85
3960 5949 2.364647 CGGTACTTAGGGTTGGAGATCC 59.635 54.545 0.00 0.00 0.00 3.36
3961 5950 2.223994 GCGGTACTTAGGGTTGGAGATC 60.224 54.545 0.00 0.00 0.00 2.75
3962 5951 1.761198 GCGGTACTTAGGGTTGGAGAT 59.239 52.381 0.00 0.00 0.00 2.75
3963 5952 1.188863 GCGGTACTTAGGGTTGGAGA 58.811 55.000 0.00 0.00 0.00 3.71
3964 5953 0.177373 GGCGGTACTTAGGGTTGGAG 59.823 60.000 0.00 0.00 0.00 3.86
3965 5954 1.606885 CGGCGGTACTTAGGGTTGGA 61.607 60.000 0.00 0.00 0.00 3.53
3966 5955 1.153509 CGGCGGTACTTAGGGTTGG 60.154 63.158 0.00 0.00 0.00 3.77
3967 5956 1.812507 GCGGCGGTACTTAGGGTTG 60.813 63.158 9.78 0.00 0.00 3.77
3968 5957 2.580815 GCGGCGGTACTTAGGGTT 59.419 61.111 9.78 0.00 0.00 4.11
3969 5958 3.464494 GGCGGCGGTACTTAGGGT 61.464 66.667 9.78 0.00 0.00 4.34
3970 5959 4.580551 CGGCGGCGGTACTTAGGG 62.581 72.222 25.36 0.00 0.00 3.53
3983 5972 4.410400 AAGGAGGAAAGGGCGGCG 62.410 66.667 0.51 0.51 0.00 6.46
3984 5973 2.438614 GAAGGAGGAAAGGGCGGC 60.439 66.667 0.00 0.00 0.00 6.53
3985 5974 2.272471 GGAAGGAGGAAAGGGCGG 59.728 66.667 0.00 0.00 0.00 6.13
3986 5975 1.853250 AAGGGAAGGAGGAAAGGGCG 61.853 60.000 0.00 0.00 0.00 6.13
3987 5976 0.033991 GAAGGGAAGGAGGAAAGGGC 60.034 60.000 0.00 0.00 0.00 5.19
3988 5977 0.626382 GGAAGGGAAGGAGGAAAGGG 59.374 60.000 0.00 0.00 0.00 3.95
3989 5978 1.675007 AGGAAGGGAAGGAGGAAAGG 58.325 55.000 0.00 0.00 0.00 3.11
3990 5979 2.916269 AGAAGGAAGGGAAGGAGGAAAG 59.084 50.000 0.00 0.00 0.00 2.62
3991 5980 2.913617 GAGAAGGAAGGGAAGGAGGAAA 59.086 50.000 0.00 0.00 0.00 3.13
3992 5981 2.552367 GAGAAGGAAGGGAAGGAGGAA 58.448 52.381 0.00 0.00 0.00 3.36
3993 5982 1.619977 CGAGAAGGAAGGGAAGGAGGA 60.620 57.143 0.00 0.00 0.00 3.71
3994 5983 0.827368 CGAGAAGGAAGGGAAGGAGG 59.173 60.000 0.00 0.00 0.00 4.30
3995 5984 0.176910 GCGAGAAGGAAGGGAAGGAG 59.823 60.000 0.00 0.00 0.00 3.69
3996 5985 1.605058 CGCGAGAAGGAAGGGAAGGA 61.605 60.000 0.00 0.00 0.00 3.36
3997 5986 1.153549 CGCGAGAAGGAAGGGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
3998 5987 1.153549 CCGCGAGAAGGAAGGGAAG 60.154 63.158 8.23 0.00 0.00 3.46
3999 5988 1.885163 GACCGCGAGAAGGAAGGGAA 61.885 60.000 8.23 0.00 0.00 3.97
4000 5989 2.283676 ACCGCGAGAAGGAAGGGA 60.284 61.111 8.23 0.00 0.00 4.20
4001 5990 2.184579 GACCGCGAGAAGGAAGGG 59.815 66.667 8.23 0.00 0.00 3.95
4002 5991 2.202623 CGACCGCGAGAAGGAAGG 60.203 66.667 8.23 0.00 40.82 3.46
4003 5992 2.202623 CCGACCGCGAGAAGGAAG 60.203 66.667 8.23 0.00 40.82 3.46
4004 5993 3.755628 CCCGACCGCGAGAAGGAA 61.756 66.667 8.23 0.00 40.82 3.36
4029 6018 4.803426 GTCTGTCGAGGCCCGCTG 62.803 72.222 0.00 4.19 38.37 5.18
4033 6022 4.436998 CACCGTCTGTCGAGGCCC 62.437 72.222 0.00 0.00 42.86 5.80
4034 6023 4.436998 CCACCGTCTGTCGAGGCC 62.437 72.222 0.00 0.00 42.86 5.19
4036 6025 4.778415 CGCCACCGTCTGTCGAGG 62.778 72.222 0.00 0.00 42.86 4.63
4037 6026 4.778415 CCGCCACCGTCTGTCGAG 62.778 72.222 0.00 0.00 42.86 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.