Multiple sequence alignment - TraesCS1B01G272700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G272700 chr1B 100.000 4003 0 0 1 4003 478601582 478597580 0.000000e+00 7393.0
1 TraesCS1B01G272700 chr1B 98.701 1078 13 1 1 1077 478611924 478610847 0.000000e+00 1912.0
2 TraesCS1B01G272700 chr1B 95.767 189 8 0 3250 3438 284013045 284013233 5.030000e-79 305.0
3 TraesCS1B01G272700 chr1B 76.132 486 83 14 3468 3928 33851569 33852046 1.450000e-54 224.0
4 TraesCS1B01G272700 chr1B 81.818 209 36 2 3461 3668 405575146 405574939 1.480000e-39 174.0
5 TraesCS1B01G272700 chr1B 96.970 33 1 0 1779 1811 478599739 478599707 5.590000e-04 56.5
6 TraesCS1B01G272700 chr1B 96.970 33 1 0 1844 1876 478599804 478599772 5.590000e-04 56.5
7 TraesCS1B01G272700 chr1D 92.888 2053 104 21 1 2023 356077238 356075198 0.000000e+00 2944.0
8 TraesCS1B01G272700 chr1D 91.063 1242 69 19 2022 3250 356074763 356073551 0.000000e+00 1640.0
9 TraesCS1B01G272700 chr1D 85.952 541 71 5 3454 3993 356073550 356073014 1.250000e-159 573.0
10 TraesCS1B01G272700 chr1D 96.970 33 1 0 1844 1876 356075436 356075404 5.590000e-04 56.5
11 TraesCS1B01G272700 chr1A 90.444 1643 84 28 433 2052 456657922 456656330 0.000000e+00 2097.0
12 TraesCS1B01G272700 chr1A 89.782 1145 83 15 2119 3246 456656300 456655173 0.000000e+00 1435.0
13 TraesCS1B01G272700 chr1A 90.046 432 40 3 1 432 456658382 456657954 1.260000e-154 556.0
14 TraesCS1B01G272700 chr1A 82.070 541 89 8 3461 3999 374930574 374930040 4.720000e-124 455.0
15 TraesCS1B01G272700 chr1A 100.000 32 0 0 1844 1875 456656573 456656542 4.320000e-05 60.2
16 TraesCS1B01G272700 chr1A 96.970 33 1 0 1779 1811 456656534 456656502 5.590000e-04 56.5
17 TraesCS1B01G272700 chr5A 81.670 551 95 5 3455 4003 491160899 491160353 1.700000e-123 453.0
18 TraesCS1B01G272700 chr5A 84.103 195 29 2 3058 3251 491161093 491160900 1.900000e-43 187.0
19 TraesCS1B01G272700 chr5B 79.197 548 107 6 3455 4000 286862681 286862139 1.360000e-99 374.0
20 TraesCS1B01G272700 chr5B 83.417 199 28 3 3055 3251 466614203 466614008 3.180000e-41 180.0
21 TraesCS1B01G272700 chr5B 76.142 197 28 12 605 792 702889892 702889706 7.130000e-13 86.1
22 TraesCS1B01G272700 chr4D 78.612 533 96 5 3455 3986 408587088 408586573 1.780000e-88 337.0
23 TraesCS1B01G272700 chr2A 94.681 188 10 0 3251 3438 31408497 31408684 3.910000e-75 292.0
24 TraesCS1B01G272700 chr6B 94.149 188 10 1 3251 3438 382038550 382038736 6.550000e-73 285.0
25 TraesCS1B01G272700 chr6B 92.021 188 15 0 3250 3437 457435103 457435290 8.530000e-67 265.0
26 TraesCS1B01G272700 chr6B 89.349 169 15 3 3085 3251 602820657 602820490 4.050000e-50 209.0
27 TraesCS1B01G272700 chr3B 94.149 188 10 1 3251 3438 771313880 771313694 6.550000e-73 285.0
28 TraesCS1B01G272700 chr2D 93.651 189 12 0 3250 3438 555104225 555104413 2.350000e-72 283.0
29 TraesCS1B01G272700 chr2D 89.560 182 19 0 3070 3251 564917299 564917480 8.650000e-57 231.0
30 TraesCS1B01G272700 chr7B 93.122 189 13 0 3250 3438 581389750 581389562 1.100000e-70 278.0
31 TraesCS1B01G272700 chr7B 85.417 192 27 1 3058 3249 320258984 320258794 8.780000e-47 198.0
32 TraesCS1B01G272700 chr3D 93.085 188 13 0 3251 3438 66177501 66177314 3.940000e-70 276.0
33 TraesCS1B01G272700 chr3D 82.667 225 37 2 3775 3998 533925275 533925052 8.780000e-47 198.0
34 TraesCS1B01G272700 chr3D 84.574 188 29 0 3064 3251 444194210 444194397 1.900000e-43 187.0
35 TraesCS1B01G272700 chr2B 92.553 188 12 1 3251 3438 621670997 621670812 6.590000e-68 268.0
36 TraesCS1B01G272700 chr2B 73.763 465 95 20 3470 3926 34527947 34528392 1.490000e-34 158.0
37 TraesCS1B01G272700 chr6A 94.304 158 9 0 1654 1811 555421279 555421122 4.000000e-60 243.0
38 TraesCS1B01G272700 chr6A 88.571 175 18 1 3079 3251 322062432 322062606 1.130000e-50 211.0
39 TraesCS1B01G272700 chr6A 98.387 62 1 0 1844 1905 555421154 555421093 4.230000e-20 110.0
40 TraesCS1B01G272700 chr6D 88.235 153 17 1 3837 3988 347406488 347406640 8.840000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G272700 chr1B 478597580 478601582 4002 True 2502.000 7393 97.98000 1 4003 3 chr1B.!!$R3 4002
1 TraesCS1B01G272700 chr1B 478610847 478611924 1077 True 1912.000 1912 98.70100 1 1077 1 chr1B.!!$R2 1076
2 TraesCS1B01G272700 chr1D 356073014 356077238 4224 True 1303.375 2944 91.71825 1 3993 4 chr1D.!!$R1 3992
3 TraesCS1B01G272700 chr1A 456655173 456658382 3209 True 840.940 2097 93.44840 1 3246 5 chr1A.!!$R2 3245
4 TraesCS1B01G272700 chr1A 374930040 374930574 534 True 455.000 455 82.07000 3461 3999 1 chr1A.!!$R1 538
5 TraesCS1B01G272700 chr5A 491160353 491161093 740 True 320.000 453 82.88650 3058 4003 2 chr5A.!!$R1 945
6 TraesCS1B01G272700 chr5B 286862139 286862681 542 True 374.000 374 79.19700 3455 4000 1 chr5B.!!$R1 545
7 TraesCS1B01G272700 chr4D 408586573 408587088 515 True 337.000 337 78.61200 3455 3986 1 chr4D.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 2.014128 CCTTGGTTCTTTGTGTCACGT 58.986 47.619 0.0 0.0 0.00 4.49 F
1216 1279 0.107945 GTTCATCGCTGGAGGAGCTT 60.108 55.000 0.0 0.0 46.64 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2071 1.277557 AGAGAAGCTAACACCTGCCTG 59.722 52.381 0.0 0.0 0.00 4.85 R
3211 3735 0.314618 TCCGGTCATCGTTTCGTTCA 59.685 50.000 0.0 0.0 37.11 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.014128 CCTTGGTTCTTTGTGTCACGT 58.986 47.619 0.00 0.00 0.00 4.49
363 364 6.064717 GTCTAAATTTGATAGCCCAGTGGAT 58.935 40.000 11.95 0.79 0.00 3.41
1077 1140 0.250338 ACCTCCTTCGCAACTCCAAC 60.250 55.000 0.00 0.00 0.00 3.77
1083 1146 0.934496 TTCGCAACTCCAACAACTCG 59.066 50.000 0.00 0.00 0.00 4.18
1216 1279 0.107945 GTTCATCGCTGGAGGAGCTT 60.108 55.000 0.00 0.00 46.64 3.74
1402 1468 7.424227 ACTTCACGAATATTTTACCGAACAA 57.576 32.000 1.72 0.00 0.00 2.83
1573 1641 5.410439 TCCCTCTGTAAACAAATAAAGACGC 59.590 40.000 0.00 0.00 0.00 5.19
1580 1648 7.079475 TGTAAACAAATAAAGACGCTTTAGGC 58.921 34.615 14.38 0.00 37.64 3.93
1620 1691 2.983229 AGCTGACAATCACCAGATCAC 58.017 47.619 0.00 0.00 31.90 3.06
1644 1715 6.470877 ACGGCGTGTAATTAAATTGCTTAATG 59.529 34.615 13.76 0.00 38.94 1.90
1782 1853 5.065218 CCTCAGGTTAGACAATTACACATGC 59.935 44.000 0.00 0.00 0.00 4.06
1816 1887 3.255888 TGGTAACTCTGTAGCTGTGTCAG 59.744 47.826 0.00 0.00 37.61 3.51
1825 1896 2.614446 GCTGTGTCAGTGCTGCCTG 61.614 63.158 10.65 10.65 33.43 4.85
1913 1984 8.901793 TGATTTTGCAGCTGACAATTATACATA 58.098 29.630 20.43 1.08 0.00 2.29
1936 2007 2.551721 GCCCATCCCATGTGATAGAGTG 60.552 54.545 0.00 0.00 0.00 3.51
1944 2015 3.211865 CATGTGATAGAGTGGCTGCAAT 58.788 45.455 0.50 0.00 0.00 3.56
1949 2020 5.991606 TGTGATAGAGTGGCTGCAATAATAC 59.008 40.000 0.50 0.00 0.00 1.89
1950 2021 5.409826 GTGATAGAGTGGCTGCAATAATACC 59.590 44.000 0.50 0.00 0.00 2.73
1951 2022 5.307976 TGATAGAGTGGCTGCAATAATACCT 59.692 40.000 0.50 0.00 0.00 3.08
1952 2023 6.496911 TGATAGAGTGGCTGCAATAATACCTA 59.503 38.462 0.50 0.00 0.00 3.08
1953 2024 4.962155 AGAGTGGCTGCAATAATACCTAC 58.038 43.478 0.50 0.00 0.00 3.18
1954 2025 4.656112 AGAGTGGCTGCAATAATACCTACT 59.344 41.667 0.50 0.00 0.00 2.57
2102 2613 7.328493 TGACGTCTGTAATCATTTTACTCACTG 59.672 37.037 17.92 0.00 0.00 3.66
2104 2615 8.301720 ACGTCTGTAATCATTTTACTCACTGTA 58.698 33.333 0.00 0.00 0.00 2.74
2296 2807 0.745845 AAAAGAGCATCGCATCGGCT 60.746 50.000 0.00 0.00 42.67 5.52
2333 2844 6.147164 CGTTAAAGAAAGGCATGTCTTCACTA 59.853 38.462 14.03 0.30 32.90 2.74
2344 2855 6.174451 CATGTCTTCACTACATGGTTTCAG 57.826 41.667 8.06 0.00 46.78 3.02
2345 2856 5.545063 TGTCTTCACTACATGGTTTCAGA 57.455 39.130 0.00 0.00 0.00 3.27
2346 2857 5.297547 TGTCTTCACTACATGGTTTCAGAC 58.702 41.667 0.00 2.22 0.00 3.51
2363 2874 3.005472 TCAGACTTTCAGTTACCCAGTCG 59.995 47.826 0.00 0.00 39.14 4.18
2369 2880 0.034896 CAGTTACCCAGTCGCTTGGT 59.965 55.000 7.55 7.55 36.45 3.67
2371 2882 0.320697 GTTACCCAGTCGCTTGGTCT 59.679 55.000 6.00 0.00 36.45 3.85
2373 2884 2.154567 TACCCAGTCGCTTGGTCTAT 57.845 50.000 6.00 0.00 36.45 1.98
2377 2888 2.158900 CCCAGTCGCTTGGTCTATTGAT 60.159 50.000 4.63 0.00 36.45 2.57
2378 2889 2.868583 CCAGTCGCTTGGTCTATTGATG 59.131 50.000 0.00 0.00 33.38 3.07
2381 2892 3.055819 AGTCGCTTGGTCTATTGATGTGT 60.056 43.478 0.00 0.00 0.00 3.72
2382 2893 4.159693 AGTCGCTTGGTCTATTGATGTGTA 59.840 41.667 0.00 0.00 0.00 2.90
2384 2895 4.159693 TCGCTTGGTCTATTGATGTGTAGT 59.840 41.667 0.00 0.00 0.00 2.73
2385 2896 5.358725 TCGCTTGGTCTATTGATGTGTAGTA 59.641 40.000 0.00 0.00 0.00 1.82
2387 2898 6.459710 CGCTTGGTCTATTGATGTGTAGTAGA 60.460 42.308 0.00 0.00 0.00 2.59
2388 2899 6.920758 GCTTGGTCTATTGATGTGTAGTAGAG 59.079 42.308 0.00 0.00 0.00 2.43
2389 2900 7.416890 GCTTGGTCTATTGATGTGTAGTAGAGT 60.417 40.741 0.00 0.00 0.00 3.24
2390 2901 9.121658 CTTGGTCTATTGATGTGTAGTAGAGTA 57.878 37.037 0.00 0.00 0.00 2.59
2391 2902 8.678593 TGGTCTATTGATGTGTAGTAGAGTAG 57.321 38.462 0.00 0.00 0.00 2.57
2393 2904 9.122779 GGTCTATTGATGTGTAGTAGAGTAGTT 57.877 37.037 0.00 0.00 0.00 2.24
2394 2905 9.938670 GTCTATTGATGTGTAGTAGAGTAGTTG 57.061 37.037 0.00 0.00 0.00 3.16
2453 2964 7.845037 TGAAGAACATCTTGATGTCTGTCTAT 58.155 34.615 15.48 7.24 36.73 1.98
2510 3021 3.639094 AGGTAAATACGCTCTGCATCTCT 59.361 43.478 0.00 0.00 0.00 3.10
2513 3024 2.522836 ATACGCTCTGCATCTCTTGG 57.477 50.000 0.00 0.00 0.00 3.61
2514 3025 0.461548 TACGCTCTGCATCTCTTGGG 59.538 55.000 0.00 0.00 0.00 4.12
2522 3033 0.106819 GCATCTCTTGGGCCATCAGT 60.107 55.000 7.26 0.00 0.00 3.41
2531 3042 3.297134 TGGGCCATCAGTAAATTCTCC 57.703 47.619 0.00 0.00 0.00 3.71
2532 3043 2.852449 TGGGCCATCAGTAAATTCTCCT 59.148 45.455 0.00 0.00 0.00 3.69
2535 3046 5.134339 TGGGCCATCAGTAAATTCTCCTATT 59.866 40.000 0.00 0.00 0.00 1.73
2570 3081 0.307760 CTGAGTGGCAACCAAACGAC 59.692 55.000 0.00 0.00 34.18 4.34
2595 3106 4.022849 GCTGATGCCTTCTTGTTTTAGTGT 60.023 41.667 0.00 0.00 0.00 3.55
2597 3108 6.463995 TGATGCCTTCTTGTTTTAGTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
2644 3155 2.507324 GAAGGTGCTCTCGACGCC 60.507 66.667 0.00 0.00 38.00 5.68
2698 3209 2.908940 CCGATTGCCCTGATGCCC 60.909 66.667 0.00 0.00 0.00 5.36
2700 3211 1.753848 CGATTGCCCTGATGCCCAA 60.754 57.895 0.00 0.00 0.00 4.12
2816 3327 1.578206 GCTTTCCAACGTGAGGCTCC 61.578 60.000 12.86 2.37 0.00 4.70
2884 3395 1.444383 CGTGCACGAGAAGCTGCTA 60.444 57.895 34.93 0.00 43.02 3.49
2887 3398 1.216710 GCACGAGAAGCTGCTACCT 59.783 57.895 0.90 3.08 0.00 3.08
2896 3407 2.821366 CTGCTACCTTGGCTGGCG 60.821 66.667 0.00 0.00 0.00 5.69
2956 3473 0.666577 AACTGGTGACGCTAACGAGC 60.667 55.000 0.00 0.00 46.00 5.03
2974 3491 1.588082 CAGCCAAAGGGATGTGCAC 59.412 57.895 10.75 10.75 45.62 4.57
2986 3503 4.842948 AGGGATGTGCACATATATCTGTCT 59.157 41.667 31.45 15.92 36.57 3.41
3020 3537 9.730705 TGAATCTTCAAGAATCTGTCTTTACAT 57.269 29.630 4.10 0.00 44.64 2.29
3063 3584 2.285977 AGTATCAAATTTCGGTCCGCC 58.714 47.619 6.34 0.00 0.00 6.13
3084 3605 2.203153 ACTGACCGGGCAACACAC 60.203 61.111 13.37 0.00 39.74 3.82
3106 3627 4.081198 ACAAAATTGCTCCTTCACAACCAA 60.081 37.500 0.00 0.00 0.00 3.67
3178 3701 8.397148 TCGTACGTAACTAAACACATATCATCA 58.603 33.333 16.05 0.00 0.00 3.07
3179 3702 9.177304 CGTACGTAACTAAACACATATCATCAT 57.823 33.333 7.22 0.00 0.00 2.45
3197 3721 8.991243 ATCATCATACAACCAAAAATTGACAG 57.009 30.769 0.00 0.00 0.00 3.51
3211 3735 9.167311 CAAAAATTGACAGGCTCTACTAACTAT 57.833 33.333 0.00 0.00 0.00 2.12
3250 3774 4.778143 AGTTCATCCACGGCCGGC 62.778 66.667 31.76 21.18 0.00 6.13
3252 3776 4.776322 TTCATCCACGGCCGGCAG 62.776 66.667 31.76 28.22 0.00 4.85
3314 3838 2.996631 CTGCTCCAGCCATTCTTTACT 58.003 47.619 0.00 0.00 41.18 2.24
3315 3839 4.142609 CTGCTCCAGCCATTCTTTACTA 57.857 45.455 0.00 0.00 41.18 1.82
3316 3840 4.517285 CTGCTCCAGCCATTCTTTACTAA 58.483 43.478 0.00 0.00 41.18 2.24
3317 3841 4.917385 TGCTCCAGCCATTCTTTACTAAA 58.083 39.130 0.00 0.00 41.18 1.85
3318 3842 4.700213 TGCTCCAGCCATTCTTTACTAAAC 59.300 41.667 0.00 0.00 41.18 2.01
3319 3843 4.700213 GCTCCAGCCATTCTTTACTAAACA 59.300 41.667 0.00 0.00 34.31 2.83
3320 3844 5.183140 GCTCCAGCCATTCTTTACTAAACAA 59.817 40.000 0.00 0.00 34.31 2.83
3321 3845 6.127619 GCTCCAGCCATTCTTTACTAAACAAT 60.128 38.462 0.00 0.00 34.31 2.71
3322 3846 7.067008 GCTCCAGCCATTCTTTACTAAACAATA 59.933 37.037 0.00 0.00 34.31 1.90
3323 3847 8.276252 TCCAGCCATTCTTTACTAAACAATAC 57.724 34.615 0.00 0.00 0.00 1.89
3324 3848 7.885922 TCCAGCCATTCTTTACTAAACAATACA 59.114 33.333 0.00 0.00 0.00 2.29
3325 3849 8.519526 CCAGCCATTCTTTACTAAACAATACAA 58.480 33.333 0.00 0.00 0.00 2.41
3326 3850 9.906660 CAGCCATTCTTTACTAAACAATACAAA 57.093 29.630 0.00 0.00 0.00 2.83
3352 3876 9.412460 AGAAATCATAAGAAACCATGATTAGCA 57.588 29.630 9.51 0.00 46.26 3.49
3357 3881 9.851686 TCATAAGAAACCATGATTAGCATTACT 57.148 29.630 0.00 0.00 34.15 2.24
3375 3899 8.190784 AGCATTACTAATTACTTGGACAAATGC 58.809 33.333 14.18 14.18 0.00 3.56
3376 3900 8.190784 GCATTACTAATTACTTGGACAAATGCT 58.809 33.333 14.46 0.00 0.00 3.79
3377 3901 9.507280 CATTACTAATTACTTGGACAAATGCTG 57.493 33.333 0.00 0.00 0.00 4.41
3378 3902 5.954335 ACTAATTACTTGGACAAATGCTGC 58.046 37.500 0.00 0.00 0.00 5.25
3379 3903 2.987413 TTACTTGGACAAATGCTGCG 57.013 45.000 0.00 0.00 0.00 5.18
3380 3904 0.521291 TACTTGGACAAATGCTGCGC 59.479 50.000 0.00 0.00 0.00 6.09
3381 3905 1.286570 CTTGGACAAATGCTGCGCA 59.713 52.632 10.98 10.98 44.86 6.09
3382 3906 0.318869 CTTGGACAAATGCTGCGCAA 60.319 50.000 13.05 0.00 43.62 4.85
3383 3907 0.597118 TTGGACAAATGCTGCGCAAC 60.597 50.000 13.05 7.98 43.62 4.17
3384 3908 1.007502 GGACAAATGCTGCGCAACA 60.008 52.632 16.89 16.89 43.62 3.33
3395 3919 2.935191 CGCAACAGCGCTGTGTAA 59.065 55.556 41.21 0.00 45.47 2.41
3396 3920 1.278337 CGCAACAGCGCTGTGTAAA 59.722 52.632 41.21 0.00 45.47 2.01
3397 3921 0.722469 CGCAACAGCGCTGTGTAAAG 60.722 55.000 41.21 27.34 45.47 1.85
3398 3922 0.586319 GCAACAGCGCTGTGTAAAGA 59.414 50.000 41.21 0.00 44.13 2.52
3399 3923 1.660333 GCAACAGCGCTGTGTAAAGAC 60.660 52.381 41.21 21.51 44.13 3.01
3400 3924 1.867233 CAACAGCGCTGTGTAAAGACT 59.133 47.619 41.21 21.81 44.13 3.24
3401 3925 2.240493 ACAGCGCTGTGTAAAGACTT 57.760 45.000 40.34 13.29 43.11 3.01
3402 3926 2.561569 ACAGCGCTGTGTAAAGACTTT 58.438 42.857 40.34 12.72 43.11 2.66
3403 3927 2.287915 ACAGCGCTGTGTAAAGACTTTG 59.712 45.455 40.34 12.16 43.11 2.77
3404 3928 1.264288 AGCGCTGTGTAAAGACTTTGC 59.736 47.619 10.39 9.81 0.00 3.68
3405 3929 1.663161 GCGCTGTGTAAAGACTTTGCC 60.663 52.381 10.80 4.48 0.00 4.52
3406 3930 1.069227 CGCTGTGTAAAGACTTTGCCC 60.069 52.381 10.80 1.07 0.00 5.36
3407 3931 1.269723 GCTGTGTAAAGACTTTGCCCC 59.730 52.381 10.80 3.69 0.00 5.80
3408 3932 1.535462 CTGTGTAAAGACTTTGCCCCG 59.465 52.381 10.80 0.00 0.00 5.73
3409 3933 0.879090 GTGTAAAGACTTTGCCCCGG 59.121 55.000 10.80 0.00 0.00 5.73
3410 3934 0.891904 TGTAAAGACTTTGCCCCGGC 60.892 55.000 10.80 0.00 42.35 6.13
3411 3935 0.608308 GTAAAGACTTTGCCCCGGCT 60.608 55.000 10.80 0.00 42.51 5.52
3412 3936 0.322187 TAAAGACTTTGCCCCGGCTC 60.322 55.000 10.80 0.00 42.51 4.70
3413 3937 3.569200 AAGACTTTGCCCCGGCTCC 62.569 63.158 7.35 0.00 42.51 4.70
3414 3938 4.035102 GACTTTGCCCCGGCTCCT 62.035 66.667 7.35 0.00 42.51 3.69
3415 3939 3.569200 GACTTTGCCCCGGCTCCTT 62.569 63.158 7.35 0.00 42.51 3.36
3416 3940 2.283173 CTTTGCCCCGGCTCCTTT 60.283 61.111 7.35 0.00 42.51 3.11
3417 3941 1.001393 CTTTGCCCCGGCTCCTTTA 60.001 57.895 7.35 0.00 42.51 1.85
3418 3942 1.001393 TTTGCCCCGGCTCCTTTAG 60.001 57.895 7.35 0.00 42.51 1.85
3429 3953 2.202295 CTCCTTTAGCTCGCTGTCTC 57.798 55.000 0.85 0.00 0.00 3.36
3430 3954 0.818296 TCCTTTAGCTCGCTGTCTCC 59.182 55.000 0.85 0.00 0.00 3.71
3431 3955 0.526524 CCTTTAGCTCGCTGTCTCCG 60.527 60.000 0.85 0.00 0.00 4.63
3432 3956 1.142778 CTTTAGCTCGCTGTCTCCGC 61.143 60.000 0.85 0.00 0.00 5.54
3433 3957 2.558554 TTTAGCTCGCTGTCTCCGCC 62.559 60.000 0.85 0.00 0.00 6.13
3436 3960 3.753434 CTCGCTGTCTCCGCCACT 61.753 66.667 0.00 0.00 0.00 4.00
3437 3961 3.978723 CTCGCTGTCTCCGCCACTG 62.979 68.421 0.00 0.00 0.00 3.66
3438 3962 4.056125 CGCTGTCTCCGCCACTGA 62.056 66.667 0.00 0.00 0.00 3.41
3439 3963 2.433318 GCTGTCTCCGCCACTGAC 60.433 66.667 0.00 0.00 0.00 3.51
3440 3964 2.126307 CTGTCTCCGCCACTGACG 60.126 66.667 0.00 0.00 33.81 4.35
3459 3983 2.032528 CCGGGCTTGACTCTTGCA 59.967 61.111 0.00 0.00 0.00 4.08
3464 3988 0.595095 GGCTTGACTCTTGCACTTGG 59.405 55.000 0.00 0.00 0.00 3.61
3490 4014 3.277211 CTTCCCGTCGTCCTTGCGA 62.277 63.158 0.00 0.00 38.68 5.10
3491 4015 2.558554 CTTCCCGTCGTCCTTGCGAT 62.559 60.000 0.00 0.00 43.07 4.58
3577 4101 0.457851 CGCCATCCTCGTCTTTCTCT 59.542 55.000 0.00 0.00 0.00 3.10
3585 4109 2.300437 CCTCGTCTTTCTCTTCCTTGGT 59.700 50.000 0.00 0.00 0.00 3.67
3589 4113 3.258622 CGTCTTTCTCTTCCTTGGTAGGT 59.741 47.826 0.00 0.00 42.60 3.08
3606 4130 3.845259 TAGTCCGGTCATGGCGCC 61.845 66.667 22.73 22.73 0.00 6.53
3646 4170 2.747460 GCCATCGCCTTGACTGCA 60.747 61.111 0.00 0.00 0.00 4.41
3678 4202 1.048724 TTCTAGGCTATGCGGGCACT 61.049 55.000 0.00 0.00 0.00 4.40
3687 4211 2.514824 GCGGGCACTGAGGGATTC 60.515 66.667 0.00 0.00 36.31 2.52
3688 4212 2.190578 CGGGCACTGAGGGATTCC 59.809 66.667 0.00 0.00 36.31 3.01
3707 4231 2.835431 CCTCCTCCTCCGCGTCAT 60.835 66.667 4.92 0.00 0.00 3.06
3729 4253 2.283894 TGCCGAAGCCTCCTCTGA 60.284 61.111 0.00 0.00 38.69 3.27
3738 4262 1.515020 CCTCCTCTGAGTTGCGAGG 59.485 63.158 11.63 11.63 46.52 4.63
3756 4280 3.931247 TGTTGTGGCCGCCTACGT 61.931 61.111 15.15 0.00 37.70 3.57
3812 4336 4.116328 CTCGAAGCCTCGCGTGGA 62.116 66.667 30.07 8.34 45.04 4.02
3833 4357 1.325355 GGTATGCCGCCTCTACTGTA 58.675 55.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.930950 CACAAAGAACCAAGGTCCTGA 58.069 47.619 0.00 0.00 0.00 3.86
71 72 2.559440 GTCCAATTGCAAGCCACAAAA 58.441 42.857 4.94 0.00 0.00 2.44
188 189 8.038944 AGCAAACATCATCAAAAAGCAGAATAT 58.961 29.630 0.00 0.00 0.00 1.28
349 350 8.465273 AAAAATAAGTTATCCACTGGGCTATC 57.535 34.615 0.00 0.00 35.12 2.08
1193 1256 2.892425 CTCCAGCGATGAACCGGC 60.892 66.667 0.06 0.00 0.00 6.13
1196 1259 1.522580 GCTCCTCCAGCGATGAACC 60.523 63.158 0.06 0.00 38.76 3.62
1216 1279 4.329545 GTGGTGCAGCTCCGGGAA 62.330 66.667 18.08 0.00 0.00 3.97
1402 1468 3.573967 ACGCCAATGTTCCTGAAAAGAAT 59.426 39.130 0.00 0.00 0.00 2.40
1573 1641 1.829222 TCCTCCGTAAGTGGCCTAAAG 59.171 52.381 3.32 0.00 0.00 1.85
1580 1648 3.429135 GCTACTTCTTCCTCCGTAAGTGG 60.429 52.174 0.00 0.00 34.23 4.00
1620 1691 6.075099 CCATTAAGCAATTTAATTACACGCCG 60.075 38.462 0.00 0.00 39.41 6.46
1644 1715 1.299089 GCACAAAACCAGACACGCC 60.299 57.895 0.00 0.00 0.00 5.68
1782 1853 5.611374 ACAGAGTTACCATTCCATATTCGG 58.389 41.667 0.00 0.00 0.00 4.30
1913 1984 2.307980 CTCTATCACATGGGATGGGCAT 59.692 50.000 21.05 0.00 32.41 4.40
1936 2007 4.625607 AGGAGTAGGTATTATTGCAGCC 57.374 45.455 0.00 0.00 0.00 4.85
1949 2020 9.191479 TCTAAAGAATTCAGAAGTAGGAGTAGG 57.809 37.037 8.44 0.00 0.00 3.18
1952 2023 8.482128 CCATCTAAAGAATTCAGAAGTAGGAGT 58.518 37.037 8.44 0.00 0.00 3.85
1953 2024 7.440856 GCCATCTAAAGAATTCAGAAGTAGGAG 59.559 40.741 8.44 0.00 0.00 3.69
1954 2025 7.092891 TGCCATCTAAAGAATTCAGAAGTAGGA 60.093 37.037 8.44 0.00 0.00 2.94
1998 2071 1.277557 AGAGAAGCTAACACCTGCCTG 59.722 52.381 0.00 0.00 0.00 4.85
2064 2575 2.037251 ACAGACGTCAATTAGTGGCTGT 59.963 45.455 19.50 6.13 0.00 4.40
2107 2618 6.417635 AGCATTAACAAACAAAGTCATCGTTG 59.582 34.615 0.00 0.00 38.59 4.10
2296 2807 0.734942 CTTTAACGCGGCCGAAGAGA 60.735 55.000 33.48 8.26 38.29 3.10
2346 2857 2.457366 AGCGACTGGGTAACTGAAAG 57.543 50.000 0.00 0.00 42.29 2.62
2363 2874 6.806751 TCTACTACACATCAATAGACCAAGC 58.193 40.000 0.00 0.00 0.00 4.01
2369 2880 9.682465 ACAACTACTCTACTACACATCAATAGA 57.318 33.333 0.00 0.00 0.00 1.98
2371 2882 9.239551 ACACAACTACTCTACTACACATCAATA 57.760 33.333 0.00 0.00 0.00 1.90
2373 2884 7.520451 ACACAACTACTCTACTACACATCAA 57.480 36.000 0.00 0.00 0.00 2.57
2377 2888 7.219322 TCAGTACACAACTACTCTACTACACA 58.781 38.462 0.00 0.00 35.76 3.72
2378 2889 7.664082 TCAGTACACAACTACTCTACTACAC 57.336 40.000 0.00 0.00 35.76 2.90
2381 2892 8.327271 AGGAATCAGTACACAACTACTCTACTA 58.673 37.037 0.00 0.00 35.76 1.82
2382 2893 7.121463 CAGGAATCAGTACACAACTACTCTACT 59.879 40.741 0.00 0.00 35.76 2.57
2384 2895 7.173032 TCAGGAATCAGTACACAACTACTCTA 58.827 38.462 0.00 0.00 35.76 2.43
2385 2896 6.010850 TCAGGAATCAGTACACAACTACTCT 58.989 40.000 0.00 0.00 35.76 3.24
2387 2898 5.336849 GCTCAGGAATCAGTACACAACTACT 60.337 44.000 0.00 0.00 35.76 2.57
2388 2899 4.865365 GCTCAGGAATCAGTACACAACTAC 59.135 45.833 0.00 0.00 35.76 2.73
2389 2900 4.772624 AGCTCAGGAATCAGTACACAACTA 59.227 41.667 0.00 0.00 35.76 2.24
2390 2901 3.580458 AGCTCAGGAATCAGTACACAACT 59.420 43.478 0.00 0.00 39.81 3.16
2391 2902 3.681897 CAGCTCAGGAATCAGTACACAAC 59.318 47.826 0.00 0.00 0.00 3.32
2393 2904 3.165071 TCAGCTCAGGAATCAGTACACA 58.835 45.455 0.00 0.00 0.00 3.72
2394 2905 3.876274 TCAGCTCAGGAATCAGTACAC 57.124 47.619 0.00 0.00 0.00 2.90
2453 2964 1.440938 CCACGGCGTCTTTGTTTCCA 61.441 55.000 10.85 0.00 0.00 3.53
2510 3021 3.269381 AGGAGAATTTACTGATGGCCCAA 59.731 43.478 0.00 0.00 0.00 4.12
2513 3024 7.148171 GCATAATAGGAGAATTTACTGATGGCC 60.148 40.741 0.00 0.00 0.00 5.36
2514 3025 7.391554 TGCATAATAGGAGAATTTACTGATGGC 59.608 37.037 0.00 0.00 0.00 4.40
2588 3099 7.121168 CCCTCTTATGATCTGCAAAACACTAAA 59.879 37.037 0.00 0.00 0.00 1.85
2589 3100 6.599244 CCCTCTTATGATCTGCAAAACACTAA 59.401 38.462 0.00 0.00 0.00 2.24
2595 3106 3.290710 GGCCCTCTTATGATCTGCAAAA 58.709 45.455 0.00 0.00 0.00 2.44
2597 3108 1.202687 CGGCCCTCTTATGATCTGCAA 60.203 52.381 0.00 0.00 0.00 4.08
2686 3197 1.228228 GATCTTGGGCATCAGGGCA 59.772 57.895 0.00 0.00 45.66 5.36
2698 3209 3.127548 CCAACACCGGAATCTTGATCTTG 59.872 47.826 9.46 0.00 0.00 3.02
2700 3211 2.305927 ACCAACACCGGAATCTTGATCT 59.694 45.455 9.46 0.00 0.00 2.75
2816 3327 1.679977 CAACCCCCTCCAGCATGTG 60.680 63.158 0.00 0.00 0.00 3.21
2884 3395 2.925170 AGACTCGCCAGCCAAGGT 60.925 61.111 0.00 0.00 0.00 3.50
2887 3398 3.706373 GGGAGACTCGCCAGCCAA 61.706 66.667 8.30 0.00 0.00 4.52
2956 3473 1.180456 TGTGCACATCCCTTTGGCTG 61.180 55.000 17.42 0.00 33.84 4.85
2965 3482 7.502120 AAAAGACAGATATATGTGCACATCC 57.498 36.000 34.54 20.98 37.76 3.51
2998 3515 9.730705 AATCATGTAAAGACAGATTCTTGAAGA 57.269 29.630 0.00 0.00 44.41 2.87
3020 3537 7.615403 ACTTCTTGTTGTAGATGCTCTAATCA 58.385 34.615 0.00 0.00 29.58 2.57
3044 3561 2.750301 GGCGGACCGAAATTTGATAC 57.250 50.000 20.50 0.00 0.00 2.24
3072 3593 1.216122 CAATTTTGTGTGTTGCCCGG 58.784 50.000 0.00 0.00 0.00 5.73
3076 3597 2.825205 AGGAGCAATTTTGTGTGTTGC 58.175 42.857 1.35 1.35 46.37 4.17
3084 3605 4.057406 TGGTTGTGAAGGAGCAATTTTG 57.943 40.909 0.00 0.00 0.00 2.44
3106 3627 7.624360 TTTGAGTATTCGGTTTAGATGCATT 57.376 32.000 0.00 0.00 0.00 3.56
3161 3683 9.679661 TTGGTTGTATGATGATATGTGTTTAGT 57.320 29.630 0.00 0.00 0.00 2.24
3172 3695 8.036575 CCTGTCAATTTTTGGTTGTATGATGAT 58.963 33.333 0.00 0.00 0.00 2.45
3178 3701 5.539955 AGAGCCTGTCAATTTTTGGTTGTAT 59.460 36.000 0.00 0.00 0.00 2.29
3179 3702 4.892934 AGAGCCTGTCAATTTTTGGTTGTA 59.107 37.500 0.00 0.00 0.00 2.41
3197 3721 5.454877 CGTTTCGTTCATAGTTAGTAGAGCC 59.545 44.000 0.00 0.00 0.00 4.70
3211 3735 0.314618 TCCGGTCATCGTTTCGTTCA 59.685 50.000 0.00 0.00 37.11 3.18
3250 3774 2.105930 GAGCTAGCTCCGCCACTG 59.894 66.667 30.89 0.00 37.11 3.66
3258 3782 4.273257 GTCGCCGGGAGCTAGCTC 62.273 72.222 32.65 32.65 42.04 4.09
3294 3818 2.996631 AGTAAAGAATGGCTGGAGCAG 58.003 47.619 0.20 0.00 44.36 4.24
3295 3819 4.568072 TTAGTAAAGAATGGCTGGAGCA 57.432 40.909 0.20 0.00 44.36 4.26
3296 3820 4.700213 TGTTTAGTAAAGAATGGCTGGAGC 59.300 41.667 0.00 0.00 41.14 4.70
3297 3821 6.817765 TTGTTTAGTAAAGAATGGCTGGAG 57.182 37.500 1.25 0.00 0.00 3.86
3298 3822 7.885922 TGTATTGTTTAGTAAAGAATGGCTGGA 59.114 33.333 22.04 4.43 35.45 3.86
3299 3823 8.050778 TGTATTGTTTAGTAAAGAATGGCTGG 57.949 34.615 22.04 0.00 35.45 4.85
3300 3824 9.906660 TTTGTATTGTTTAGTAAAGAATGGCTG 57.093 29.630 22.04 0.00 35.45 4.85
3326 3850 9.412460 TGCTAATCATGGTTTCTTATGATTTCT 57.588 29.630 15.12 0.00 46.41 2.52
3331 3855 9.851686 AGTAATGCTAATCATGGTTTCTTATGA 57.148 29.630 0.00 0.00 37.68 2.15
3349 3873 8.190784 GCATTTGTCCAAGTAATTAGTAATGCT 58.809 33.333 19.70 0.00 40.33 3.79
3350 3874 8.190784 AGCATTTGTCCAAGTAATTAGTAATGC 58.809 33.333 19.52 19.52 42.49 3.56
3351 3875 9.507280 CAGCATTTGTCCAAGTAATTAGTAATG 57.493 33.333 0.00 6.78 0.00 1.90
3352 3876 8.190784 GCAGCATTTGTCCAAGTAATTAGTAAT 58.809 33.333 0.00 0.00 0.00 1.89
3353 3877 7.535139 GCAGCATTTGTCCAAGTAATTAGTAA 58.465 34.615 0.00 0.00 0.00 2.24
3354 3878 6.183360 CGCAGCATTTGTCCAAGTAATTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
3355 3879 5.391950 CGCAGCATTTGTCCAAGTAATTAGT 60.392 40.000 0.00 0.00 0.00 2.24
3356 3880 5.030295 CGCAGCATTTGTCCAAGTAATTAG 58.970 41.667 0.00 0.00 0.00 1.73
3357 3881 4.980590 CGCAGCATTTGTCCAAGTAATTA 58.019 39.130 0.00 0.00 0.00 1.40
3358 3882 3.836949 CGCAGCATTTGTCCAAGTAATT 58.163 40.909 0.00 0.00 0.00 1.40
3359 3883 3.492421 CGCAGCATTTGTCCAAGTAAT 57.508 42.857 0.00 0.00 0.00 1.89
3360 3884 2.987413 CGCAGCATTTGTCCAAGTAA 57.013 45.000 0.00 0.00 0.00 2.24
3379 3903 0.586319 TCTTTACACAGCGCTGTTGC 59.414 50.000 39.13 0.00 42.83 4.17
3380 3904 1.867233 AGTCTTTACACAGCGCTGTTG 59.133 47.619 39.13 32.08 42.83 3.33
3381 3905 2.240493 AGTCTTTACACAGCGCTGTT 57.760 45.000 39.13 29.31 42.83 3.16
3382 3906 2.240493 AAGTCTTTACACAGCGCTGT 57.760 45.000 36.44 36.44 46.17 4.40
3383 3907 2.908634 CAAAGTCTTTACACAGCGCTG 58.091 47.619 34.89 34.89 0.00 5.18
3384 3908 1.264288 GCAAAGTCTTTACACAGCGCT 59.736 47.619 2.64 2.64 0.00 5.92
3385 3909 1.663161 GGCAAAGTCTTTACACAGCGC 60.663 52.381 0.00 0.00 0.00 5.92
3386 3910 1.069227 GGGCAAAGTCTTTACACAGCG 60.069 52.381 0.00 0.00 0.00 5.18
3387 3911 1.269723 GGGGCAAAGTCTTTACACAGC 59.730 52.381 0.00 0.00 0.00 4.40
3388 3912 1.535462 CGGGGCAAAGTCTTTACACAG 59.465 52.381 0.00 0.00 0.00 3.66
3389 3913 1.600023 CGGGGCAAAGTCTTTACACA 58.400 50.000 0.00 0.00 0.00 3.72
3390 3914 0.879090 CCGGGGCAAAGTCTTTACAC 59.121 55.000 0.00 0.00 0.00 2.90
3391 3915 0.891904 GCCGGGGCAAAGTCTTTACA 60.892 55.000 2.18 0.00 41.49 2.41
3392 3916 0.608308 AGCCGGGGCAAAGTCTTTAC 60.608 55.000 12.97 0.00 44.88 2.01
3393 3917 0.322187 GAGCCGGGGCAAAGTCTTTA 60.322 55.000 12.97 0.00 44.88 1.85
3394 3918 1.603739 GAGCCGGGGCAAAGTCTTT 60.604 57.895 12.97 0.00 44.88 2.52
3395 3919 2.034221 GAGCCGGGGCAAAGTCTT 59.966 61.111 12.97 0.00 44.88 3.01
3396 3920 4.035102 GGAGCCGGGGCAAAGTCT 62.035 66.667 12.97 0.00 44.88 3.24
3397 3921 3.569200 AAGGAGCCGGGGCAAAGTC 62.569 63.158 12.97 0.10 44.88 3.01
3398 3922 1.785353 TAAAGGAGCCGGGGCAAAGT 61.785 55.000 12.97 0.00 44.88 2.66
3399 3923 1.001393 TAAAGGAGCCGGGGCAAAG 60.001 57.895 12.97 0.00 44.88 2.77
3400 3924 1.001393 CTAAAGGAGCCGGGGCAAA 60.001 57.895 12.97 0.00 44.88 3.68
3401 3925 2.674754 CTAAAGGAGCCGGGGCAA 59.325 61.111 12.97 0.00 44.88 4.52
3402 3926 4.109675 GCTAAAGGAGCCGGGGCA 62.110 66.667 12.97 0.00 46.41 5.36
3410 3934 1.202359 GGAGACAGCGAGCTAAAGGAG 60.202 57.143 0.00 0.00 0.00 3.69
3411 3935 0.818296 GGAGACAGCGAGCTAAAGGA 59.182 55.000 0.00 0.00 0.00 3.36
3412 3936 0.526524 CGGAGACAGCGAGCTAAAGG 60.527 60.000 0.00 0.00 0.00 3.11
3413 3937 1.142778 GCGGAGACAGCGAGCTAAAG 61.143 60.000 0.00 0.00 0.00 1.85
3414 3938 1.153823 GCGGAGACAGCGAGCTAAA 60.154 57.895 0.00 0.00 0.00 1.85
3415 3939 2.490217 GCGGAGACAGCGAGCTAA 59.510 61.111 0.00 0.00 0.00 3.09
3416 3940 3.518998 GGCGGAGACAGCGAGCTA 61.519 66.667 0.00 0.00 31.66 3.32
3439 3963 4.394712 AAGAGTCAAGCCCGGCCG 62.395 66.667 21.04 21.04 0.00 6.13
3440 3964 2.747855 CAAGAGTCAAGCCCGGCC 60.748 66.667 5.55 0.00 0.00 6.13
3441 3965 3.435186 GCAAGAGTCAAGCCCGGC 61.435 66.667 0.00 0.00 0.00 6.13
3442 3966 2.032528 TGCAAGAGTCAAGCCCGG 59.967 61.111 0.00 0.00 0.00 5.73
3443 3967 0.886490 AAGTGCAAGAGTCAAGCCCG 60.886 55.000 0.00 0.00 0.00 6.13
3444 3968 0.595095 CAAGTGCAAGAGTCAAGCCC 59.405 55.000 0.00 0.00 0.00 5.19
3445 3969 0.595095 CCAAGTGCAAGAGTCAAGCC 59.405 55.000 0.00 0.00 0.00 4.35
3446 3970 0.039708 GCCAAGTGCAAGAGTCAAGC 60.040 55.000 0.00 0.00 40.77 4.01
3447 3971 1.602311 AGCCAAGTGCAAGAGTCAAG 58.398 50.000 0.00 0.00 44.83 3.02
3448 3972 2.057137 AAGCCAAGTGCAAGAGTCAA 57.943 45.000 0.00 0.00 44.83 3.18
3449 3973 1.677576 CAAAGCCAAGTGCAAGAGTCA 59.322 47.619 0.00 0.00 44.83 3.41
3450 3974 1.601412 GCAAAGCCAAGTGCAAGAGTC 60.601 52.381 0.00 0.00 44.83 3.36
3451 3975 0.386838 GCAAAGCCAAGTGCAAGAGT 59.613 50.000 0.00 0.00 44.83 3.24
3452 3976 3.190337 GCAAAGCCAAGTGCAAGAG 57.810 52.632 0.00 0.00 44.83 2.85
3464 3988 3.431725 CGACGGGAAGGGCAAAGC 61.432 66.667 0.00 0.00 0.00 3.51
3490 4014 1.316651 GCGTCTTCGACCCCTACTAT 58.683 55.000 0.00 0.00 39.71 2.12
3491 4015 0.035152 TGCGTCTTCGACCCCTACTA 60.035 55.000 0.00 0.00 39.71 1.82
3511 4035 0.460311 AGATCCGCCTCGATTCGTTT 59.540 50.000 5.89 0.00 0.00 3.60
3553 4077 4.899239 GACGAGGATGGCGGCAGG 62.899 72.222 19.29 6.52 36.61 4.85
3585 4109 1.105167 CGCCATGACCGGACTACCTA 61.105 60.000 9.46 0.00 0.00 3.08
3589 4113 3.845259 GGCGCCATGACCGGACTA 61.845 66.667 24.80 0.00 0.00 2.59
3606 4130 2.901051 ATACCAAAGCCGAGCGGTCG 62.901 60.000 28.88 28.88 46.39 4.79
3646 4170 2.044252 TAGAAGCGGCGGAGGAGT 60.044 61.111 9.78 0.00 0.00 3.85
3687 4211 4.824515 ACGCGGAGGAGGAGGAGG 62.825 72.222 12.47 0.00 0.00 4.30
3688 4212 3.213402 GACGCGGAGGAGGAGGAG 61.213 72.222 12.47 0.00 0.00 3.69
3689 4213 3.360423 ATGACGCGGAGGAGGAGGA 62.360 63.158 12.47 0.00 0.00 3.71
3729 4253 2.186826 GCCACAACACCTCGCAACT 61.187 57.895 0.00 0.00 0.00 3.16
3738 4262 3.419759 CGTAGGCGGCCACAACAC 61.420 66.667 23.09 9.42 0.00 3.32
3756 4280 4.243008 TTGCCGCAACCCTCACGA 62.243 61.111 0.38 0.00 0.00 4.35
3812 4336 1.115930 CAGTAGAGGCGGCATACCCT 61.116 60.000 13.08 2.46 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.