Multiple sequence alignment - TraesCS1B01G272500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G272500 chr1B 100.000 3284 0 0 1 3284 478559654 478562937 0.000000e+00 6065
1 TraesCS1B01G272500 chr1B 92.991 856 49 4 1 846 38597843 38598697 0.000000e+00 1238
2 TraesCS1B01G272500 chr1B 92.757 856 53 4 1 848 306060874 306061728 0.000000e+00 1229
3 TraesCS1B01G272500 chr1B 94.118 85 5 0 3199 3283 181056450 181056534 2.660000e-26 130
4 TraesCS1B01G272500 chr1B 95.062 81 4 0 3204 3284 209562262 209562182 9.560000e-26 128
5 TraesCS1B01G272500 chr1B 97.015 67 2 0 398 464 677552050 677551984 2.680000e-21 113
6 TraesCS1B01G272500 chr1A 90.602 2341 150 36 846 3166 456243233 456245523 0.000000e+00 3040
7 TraesCS1B01G272500 chr1D 91.969 2092 111 25 846 2904 355668221 355670288 0.000000e+00 2880
8 TraesCS1B01G272500 chr1D 83.516 273 33 5 2905 3177 355671523 355671783 9.100000e-61 244
9 TraesCS1B01G272500 chr1D 91.954 87 7 0 3198 3284 355222785 355222871 4.450000e-24 122
10 TraesCS1B01G272500 chr2B 87.540 1557 172 12 956 2509 682258487 682260024 0.000000e+00 1781
11 TraesCS1B01G272500 chr2B 93.326 854 48 4 1 846 47626345 47625493 0.000000e+00 1253
12 TraesCS1B01G272500 chr2B 92.749 855 53 4 1 847 47628086 47628939 0.000000e+00 1227
13 TraesCS1B01G272500 chr2A 87.599 1508 166 11 987 2492 709173375 709174863 0.000000e+00 1729
14 TraesCS1B01G272500 chr5B 85.665 1458 183 13 1030 2481 610282405 610280968 0.000000e+00 1511
15 TraesCS1B01G272500 chr5B 85.292 1455 186 14 1030 2477 610107917 610106484 0.000000e+00 1476
16 TraesCS1B01G272500 chr5B 95.062 81 4 0 3203 3283 527324295 527324375 9.560000e-26 128
17 TraesCS1B01G272500 chr5B 93.023 86 6 0 3198 3283 218533888 218533973 3.440000e-25 126
18 TraesCS1B01G272500 chr5D 85.626 1454 187 10 1032 2481 493912464 493913899 0.000000e+00 1507
19 TraesCS1B01G272500 chr5D 84.672 1494 183 30 984 2456 542106114 542107582 0.000000e+00 1448
20 TraesCS1B01G272500 chr5D 84.557 1457 201 7 1030 2481 494079147 494077710 0.000000e+00 1423
21 TraesCS1B01G272500 chr5D 91.954 87 7 0 3198 3284 363163345 363163431 4.450000e-24 122
22 TraesCS1B01G272500 chr5A 84.979 1458 189 15 1032 2481 617097304 617095869 0.000000e+00 1452
23 TraesCS1B01G272500 chr4A 84.316 1492 183 32 990 2456 626954615 626953150 0.000000e+00 1411
24 TraesCS1B01G272500 chr3A 92.774 858 51 4 1 848 556848386 556849242 0.000000e+00 1230
25 TraesCS1B01G272500 chr6D 81.271 1479 215 40 1034 2467 37117836 37116375 0.000000e+00 1140
26 TraesCS1B01G272500 chr6A 81.036 1487 216 45 1034 2467 48641796 48640323 0.000000e+00 1123
27 TraesCS1B01G272500 chr2D 76.727 1332 230 61 1024 2313 9873320 9874613 0.000000e+00 669
28 TraesCS1B01G272500 chrUn 93.213 221 15 0 1 221 452869452 452869672 3.160000e-85 326
29 TraesCS1B01G272500 chr7D 94.118 85 3 1 3198 3282 460827682 460827764 9.560000e-26 128
30 TraesCS1B01G272500 chr7D 91.860 86 7 0 3199 3284 460817971 460818056 1.600000e-23 121
31 TraesCS1B01G272500 chr3B 93.827 81 5 0 3203 3283 440787446 440787526 4.450000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G272500 chr1B 478559654 478562937 3283 False 6065 6065 100.0000 1 3284 1 chr1B.!!$F4 3283
1 TraesCS1B01G272500 chr1B 38597843 38598697 854 False 1238 1238 92.9910 1 846 1 chr1B.!!$F1 845
2 TraesCS1B01G272500 chr1B 306060874 306061728 854 False 1229 1229 92.7570 1 848 1 chr1B.!!$F3 847
3 TraesCS1B01G272500 chr1A 456243233 456245523 2290 False 3040 3040 90.6020 846 3166 1 chr1A.!!$F1 2320
4 TraesCS1B01G272500 chr1D 355668221 355671783 3562 False 1562 2880 87.7425 846 3177 2 chr1D.!!$F2 2331
5 TraesCS1B01G272500 chr2B 682258487 682260024 1537 False 1781 1781 87.5400 956 2509 1 chr2B.!!$F2 1553
6 TraesCS1B01G272500 chr2B 47625493 47626345 852 True 1253 1253 93.3260 1 846 1 chr2B.!!$R1 845
7 TraesCS1B01G272500 chr2B 47628086 47628939 853 False 1227 1227 92.7490 1 847 1 chr2B.!!$F1 846
8 TraesCS1B01G272500 chr2A 709173375 709174863 1488 False 1729 1729 87.5990 987 2492 1 chr2A.!!$F1 1505
9 TraesCS1B01G272500 chr5B 610280968 610282405 1437 True 1511 1511 85.6650 1030 2481 1 chr5B.!!$R2 1451
10 TraesCS1B01G272500 chr5B 610106484 610107917 1433 True 1476 1476 85.2920 1030 2477 1 chr5B.!!$R1 1447
11 TraesCS1B01G272500 chr5D 493912464 493913899 1435 False 1507 1507 85.6260 1032 2481 1 chr5D.!!$F2 1449
12 TraesCS1B01G272500 chr5D 542106114 542107582 1468 False 1448 1448 84.6720 984 2456 1 chr5D.!!$F3 1472
13 TraesCS1B01G272500 chr5D 494077710 494079147 1437 True 1423 1423 84.5570 1030 2481 1 chr5D.!!$R1 1451
14 TraesCS1B01G272500 chr5A 617095869 617097304 1435 True 1452 1452 84.9790 1032 2481 1 chr5A.!!$R1 1449
15 TraesCS1B01G272500 chr4A 626953150 626954615 1465 True 1411 1411 84.3160 990 2456 1 chr4A.!!$R1 1466
16 TraesCS1B01G272500 chr3A 556848386 556849242 856 False 1230 1230 92.7740 1 848 1 chr3A.!!$F1 847
17 TraesCS1B01G272500 chr6D 37116375 37117836 1461 True 1140 1140 81.2710 1034 2467 1 chr6D.!!$R1 1433
18 TraesCS1B01G272500 chr6A 48640323 48641796 1473 True 1123 1123 81.0360 1034 2467 1 chr6A.!!$R1 1433
19 TraesCS1B01G272500 chr2D 9873320 9874613 1293 False 669 669 76.7270 1024 2313 1 chr2D.!!$F1 1289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.250553 ACCCGCACCTTCGAAATTCA 60.251 50.0 0.0 0.0 0.0 2.57 F
628 636 0.397816 AATGGAGAGAGAGGACGGGG 60.398 60.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2024 0.682532 TCATGCCTGAGAGCTCGAGT 60.683 55.0 15.13 0.23 0.00 4.18 R
2526 2633 2.235845 TAGCATGACATGAGCTCTGC 57.764 50.0 19.76 14.85 39.68 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.495055 AGAAAATCAAGTCACAAGCAAGAAAT 58.505 30.769 0.00 0.00 0.00 2.17
88 89 0.250553 ACCCGCACCTTCGAAATTCA 60.251 50.000 0.00 0.00 0.00 2.57
94 95 2.476185 GCACCTTCGAAATTCATCACGG 60.476 50.000 0.00 0.00 0.00 4.94
97 98 2.351726 CCTTCGAAATTCATCACGGACC 59.648 50.000 0.00 0.00 0.00 4.46
152 153 6.098838 GGATCCATGTGCTACTATATCCATCA 59.901 42.308 6.95 0.00 33.39 3.07
194 195 6.542852 CACACCTACAAACAAATCCTTATCG 58.457 40.000 0.00 0.00 0.00 2.92
197 198 7.119262 ACACCTACAAACAAATCCTTATCGAAG 59.881 37.037 0.00 0.00 0.00 3.79
200 201 6.877611 ACAAACAAATCCTTATCGAAGTGT 57.122 33.333 0.00 0.00 0.00 3.55
221 222 6.383726 AGTGTATTACAAATCCATGGGCAATT 59.616 34.615 13.02 1.10 0.00 2.32
240 241 5.163374 GCAATTAGGAAGAAGCAATCCCAAT 60.163 40.000 0.00 0.00 36.31 3.16
269 270 0.969894 CGGACTTGACCAGAGGAAGT 59.030 55.000 0.00 0.00 32.57 3.01
277 278 0.900647 ACCAGAGGAAGTCGACCAGG 60.901 60.000 13.01 5.30 0.00 4.45
339 340 1.133823 AGTGGATGTGTTGGTGCTGAA 60.134 47.619 0.00 0.00 0.00 3.02
510 511 1.691337 CGTGGTGGGGAGGGGAATA 60.691 63.158 0.00 0.00 0.00 1.75
564 565 2.003548 GGCCATGGAGGAGGAAGGT 61.004 63.158 18.40 0.00 41.22 3.50
569 570 0.985490 ATGGAGGAGGAAGGTCTGGC 60.985 60.000 0.00 0.00 0.00 4.85
622 630 6.487828 AGAGATGAGATAATGGAGAGAGAGG 58.512 44.000 0.00 0.00 0.00 3.69
628 636 0.397816 AATGGAGAGAGAGGACGGGG 60.398 60.000 0.00 0.00 0.00 5.73
631 639 1.643475 GGAGAGAGAGGACGGGGGTA 61.643 65.000 0.00 0.00 0.00 3.69
640 648 1.688187 GACGGGGGTAGGTGTGGAT 60.688 63.158 0.00 0.00 0.00 3.41
651 659 6.424032 GGGTAGGTGTGGATAGAAAGAAAAT 58.576 40.000 0.00 0.00 0.00 1.82
654 662 5.892348 AGGTGTGGATAGAAAGAAAATGGT 58.108 37.500 0.00 0.00 0.00 3.55
658 666 6.431234 GTGTGGATAGAAAGAAAATGGTGAGT 59.569 38.462 0.00 0.00 0.00 3.41
667 675 2.467566 AAATGGTGAGTGGGTACGAC 57.532 50.000 0.00 0.00 37.31 4.34
720 733 5.445939 CGATTTGACTGTAACTGTATGCCAC 60.446 44.000 0.00 0.00 0.00 5.01
758 771 2.247111 AGGGATAATTGCATGGGACCAA 59.753 45.455 0.00 0.00 0.00 3.67
781 794 4.457496 CCACGGCCACTCGCATCT 62.457 66.667 2.24 0.00 40.31 2.90
852 865 8.827677 GTTAGAATTCACCATATTCGCTAGTTT 58.172 33.333 8.44 0.00 37.15 2.66
858 871 6.880484 TCACCATATTCGCTAGTTTTCCTTA 58.120 36.000 0.00 0.00 0.00 2.69
902 918 6.759827 TCTTAATTGCTCCGAAACTATGGTAC 59.240 38.462 0.00 0.00 0.00 3.34
903 919 4.755266 ATTGCTCCGAAACTATGGTACT 57.245 40.909 0.00 0.00 0.00 2.73
904 920 5.864418 ATTGCTCCGAAACTATGGTACTA 57.136 39.130 0.00 0.00 0.00 1.82
952 971 6.721668 TCCATCTCTCAAACTCATATCCGTAT 59.278 38.462 0.00 0.00 0.00 3.06
954 973 7.875041 CCATCTCTCAAACTCATATCCGTATTT 59.125 37.037 0.00 0.00 0.00 1.40
979 1002 2.431942 CGCCGCGGTACTTCTGTT 60.432 61.111 28.70 0.00 0.00 3.16
1242 1277 3.234630 CTCCGTCGTGCCTTTCCCA 62.235 63.158 0.00 0.00 0.00 4.37
2482 2587 2.946990 GTTCCGTGAAGGTTGGAGAAAA 59.053 45.455 0.00 0.00 41.99 2.29
2526 2633 3.522731 CTCTCTGCGTCTCGGGGG 61.523 72.222 0.00 0.00 0.00 5.40
2544 2651 0.464013 GGCAGAGCTCATGTCATGCT 60.464 55.000 17.77 2.54 40.02 3.79
2553 2660 3.937706 GCTCATGTCATGCTAAGTCAAGT 59.062 43.478 8.03 0.00 0.00 3.16
2571 2678 4.883585 TCAAGTTATAGCATGGCTCCAAAG 59.116 41.667 0.00 0.00 40.44 2.77
2580 2687 3.252701 GCATGGCTCCAAAGATGATACAG 59.747 47.826 0.00 0.00 0.00 2.74
2581 2688 4.458397 CATGGCTCCAAAGATGATACAGT 58.542 43.478 0.00 0.00 0.00 3.55
2582 2689 5.614308 CATGGCTCCAAAGATGATACAGTA 58.386 41.667 0.00 0.00 0.00 2.74
2583 2690 5.894298 TGGCTCCAAAGATGATACAGTAT 57.106 39.130 0.00 0.00 0.00 2.12
2584 2691 6.994421 TGGCTCCAAAGATGATACAGTATA 57.006 37.500 0.00 0.00 0.00 1.47
2585 2692 7.559335 TGGCTCCAAAGATGATACAGTATAT 57.441 36.000 0.00 0.00 0.00 0.86
2586 2693 8.664669 TGGCTCCAAAGATGATACAGTATATA 57.335 34.615 0.00 0.00 0.00 0.86
2587 2694 8.531982 TGGCTCCAAAGATGATACAGTATATAC 58.468 37.037 4.60 4.60 0.00 1.47
2639 2746 2.432972 GCCTGCCGCCATGTTTTG 60.433 61.111 0.00 0.00 0.00 2.44
2673 2790 0.445436 CTGTTTCGGCATCTCACAGC 59.555 55.000 0.00 0.00 0.00 4.40
2690 2815 0.107410 AGCCTTGTGACACCGAAACA 60.107 50.000 2.45 0.00 0.00 2.83
2691 2816 0.028902 GCCTTGTGACACCGAAACAC 59.971 55.000 2.45 0.00 35.45 3.32
2790 2927 9.985730 ACAATTGTACTTTTGATCATGTGAATT 57.014 25.926 9.97 3.87 0.00 2.17
2806 2943 3.503748 GTGAATTTACTCACAGCCTTGCT 59.496 43.478 0.00 0.00 44.32 3.91
2807 2944 4.695455 GTGAATTTACTCACAGCCTTGCTA 59.305 41.667 0.00 0.00 44.32 3.49
2808 2945 5.181245 GTGAATTTACTCACAGCCTTGCTAA 59.819 40.000 0.00 0.00 44.32 3.09
2809 2946 5.181245 TGAATTTACTCACAGCCTTGCTAAC 59.819 40.000 0.00 0.00 36.40 2.34
2810 2947 4.351874 TTTACTCACAGCCTTGCTAACT 57.648 40.909 0.00 0.00 36.40 2.24
2811 2948 2.938956 ACTCACAGCCTTGCTAACTT 57.061 45.000 0.00 0.00 36.40 2.66
2812 2949 2.498167 ACTCACAGCCTTGCTAACTTG 58.502 47.619 0.00 0.00 36.40 3.16
2813 2950 1.198637 CTCACAGCCTTGCTAACTTGC 59.801 52.381 0.00 0.00 36.40 4.01
2814 2951 0.242017 CACAGCCTTGCTAACTTGCC 59.758 55.000 0.00 0.00 36.40 4.52
2815 2952 0.178992 ACAGCCTTGCTAACTTGCCA 60.179 50.000 0.00 0.00 36.40 4.92
2829 2976 6.750501 GCTAACTTGCCATATTCATGCATATG 59.249 38.462 15.89 15.89 37.02 1.78
2842 2989 4.579647 ATGCATATGGATGGAGCATGTA 57.420 40.909 9.15 0.00 43.60 2.29
2848 2995 6.152323 GCATATGGATGGAGCATGTATTTCTT 59.848 38.462 4.56 0.00 33.26 2.52
2894 3041 4.583489 ACTGAAACTCCGAAGTCTGAAGTA 59.417 41.667 0.00 0.00 33.48 2.24
2898 3045 6.423905 TGAAACTCCGAAGTCTGAAGTAATTG 59.576 38.462 0.00 0.00 33.48 2.32
2923 4304 9.665719 TGTCTTAAACTACATCATAGAATGCAA 57.334 29.630 0.00 0.00 0.00 4.08
2952 4333 1.563577 GGAGGAGGTTTGGGGGAGTC 61.564 65.000 0.00 0.00 0.00 3.36
2957 4338 2.306384 GGTTTGGGGGAGTCCGGAT 61.306 63.158 7.81 0.00 36.01 4.18
2995 4376 6.089551 CACTTGTTAGTTGAACTACATCTCCG 59.910 42.308 4.23 0.00 38.98 4.63
3042 4423 1.303561 TTCACATGGCCCACTCTGC 60.304 57.895 0.00 0.00 0.00 4.26
3099 4480 2.930826 ATGACCAGTTTCTCAACCGT 57.069 45.000 0.00 0.00 32.70 4.83
3104 4485 2.036862 ACCAGTTTCTCAACCGTAGTCC 59.963 50.000 0.00 0.00 32.70 3.85
3108 4489 1.608055 TTCTCAACCGTAGTCCGTGA 58.392 50.000 0.00 0.00 33.66 4.35
3112 4493 1.614903 TCAACCGTAGTCCGTGAACAT 59.385 47.619 0.00 0.00 33.66 2.71
3117 4498 2.251040 CGTAGTCCGTGAACATGTCTG 58.749 52.381 0.00 0.00 0.00 3.51
3160 4541 6.413892 TGGTGTCTCTATTTTGATGCATGTA 58.586 36.000 2.46 0.00 0.00 2.29
3167 4548 6.179756 TCTATTTTGATGCATGTACAGTGGT 58.820 36.000 2.46 0.00 0.00 4.16
3177 4558 1.822990 TGTACAGTGGTGTAGCTAGGC 59.177 52.381 0.00 0.00 39.93 3.93
3178 4559 1.100510 TACAGTGGTGTAGCTAGGCG 58.899 55.000 0.00 0.00 38.19 5.52
3179 4560 0.898789 ACAGTGGTGTAGCTAGGCGT 60.899 55.000 0.00 0.00 34.05 5.68
3180 4561 0.246635 CAGTGGTGTAGCTAGGCGTT 59.753 55.000 0.00 0.00 0.00 4.84
3181 4562 0.246635 AGTGGTGTAGCTAGGCGTTG 59.753 55.000 0.00 0.00 0.00 4.10
3182 4563 0.245539 GTGGTGTAGCTAGGCGTTGA 59.754 55.000 0.00 0.00 0.00 3.18
3183 4564 0.970640 TGGTGTAGCTAGGCGTTGAA 59.029 50.000 0.00 0.00 0.00 2.69
3184 4565 1.337447 TGGTGTAGCTAGGCGTTGAAC 60.337 52.381 0.00 0.00 0.00 3.18
3185 4566 1.337447 GGTGTAGCTAGGCGTTGAACA 60.337 52.381 0.00 0.00 0.00 3.18
3186 4567 2.409975 GTGTAGCTAGGCGTTGAACAA 58.590 47.619 0.00 0.00 0.00 2.83
3187 4568 2.412089 GTGTAGCTAGGCGTTGAACAAG 59.588 50.000 0.00 0.00 0.00 3.16
3188 4569 2.000447 GTAGCTAGGCGTTGAACAAGG 59.000 52.381 0.00 3.35 0.00 3.61
3189 4570 0.396811 AGCTAGGCGTTGAACAAGGT 59.603 50.000 8.60 0.00 0.00 3.50
3190 4571 0.517316 GCTAGGCGTTGAACAAGGTG 59.483 55.000 8.60 0.00 0.00 4.00
3191 4572 1.156736 CTAGGCGTTGAACAAGGTGG 58.843 55.000 8.60 0.00 0.00 4.61
3192 4573 0.470766 TAGGCGTTGAACAAGGTGGT 59.529 50.000 8.60 0.00 0.00 4.16
3193 4574 0.818040 AGGCGTTGAACAAGGTGGTC 60.818 55.000 8.60 0.00 33.88 4.02
3194 4575 1.652563 GCGTTGAACAAGGTGGTCC 59.347 57.895 8.60 0.00 31.76 4.46
3195 4576 1.938861 CGTTGAACAAGGTGGTCCG 59.061 57.895 0.00 0.00 31.76 4.79
3196 4577 1.503818 CGTTGAACAAGGTGGTCCGG 61.504 60.000 0.00 0.00 31.76 5.14
3197 4578 0.179040 GTTGAACAAGGTGGTCCGGA 60.179 55.000 0.00 0.00 31.76 5.14
3198 4579 0.768622 TTGAACAAGGTGGTCCGGAT 59.231 50.000 7.81 0.00 31.76 4.18
3199 4580 0.036164 TGAACAAGGTGGTCCGGATG 59.964 55.000 7.81 2.52 31.76 3.51
3200 4581 0.676782 GAACAAGGTGGTCCGGATGG 60.677 60.000 7.81 0.00 39.05 3.51
3201 4582 2.438434 CAAGGTGGTCCGGATGGC 60.438 66.667 7.81 0.00 39.05 4.40
3202 4583 4.096003 AAGGTGGTCCGGATGGCG 62.096 66.667 7.81 0.00 39.05 5.69
3204 4585 3.861797 GGTGGTCCGGATGGCGAT 61.862 66.667 7.81 0.00 34.14 4.58
3205 4586 2.588877 GTGGTCCGGATGGCGATG 60.589 66.667 7.81 0.00 34.14 3.84
3206 4587 2.762043 TGGTCCGGATGGCGATGA 60.762 61.111 7.81 0.00 34.14 2.92
3207 4588 2.280186 GGTCCGGATGGCGATGAC 60.280 66.667 7.81 0.00 34.14 3.06
3208 4589 2.499205 GTCCGGATGGCGATGACA 59.501 61.111 7.81 0.00 34.14 3.58
3209 4590 1.069765 GTCCGGATGGCGATGACAT 59.930 57.895 7.81 0.00 31.76 3.06
3210 4591 1.069596 TCCGGATGGCGATGACATG 59.930 57.895 0.00 0.00 27.61 3.21
3211 4592 1.227645 CCGGATGGCGATGACATGT 60.228 57.895 0.00 0.00 27.61 3.21
3212 4593 0.033366 CCGGATGGCGATGACATGTA 59.967 55.000 0.00 0.00 27.61 2.29
3213 4594 1.338105 CCGGATGGCGATGACATGTAT 60.338 52.381 0.00 0.00 27.61 2.29
3214 4595 1.995484 CGGATGGCGATGACATGTATC 59.005 52.381 0.00 1.95 27.61 2.24
3215 4596 2.353109 CGGATGGCGATGACATGTATCT 60.353 50.000 0.00 0.00 27.61 1.98
3216 4597 3.119495 CGGATGGCGATGACATGTATCTA 60.119 47.826 0.00 0.00 27.61 1.98
3217 4598 4.428209 GGATGGCGATGACATGTATCTAG 58.572 47.826 0.00 0.00 27.61 2.43
3218 4599 3.942130 TGGCGATGACATGTATCTAGG 57.058 47.619 0.00 0.00 0.00 3.02
3219 4600 2.562738 TGGCGATGACATGTATCTAGGG 59.437 50.000 0.00 0.00 0.00 3.53
3220 4601 2.563179 GGCGATGACATGTATCTAGGGT 59.437 50.000 0.00 0.00 0.00 4.34
3221 4602 3.762288 GGCGATGACATGTATCTAGGGTA 59.238 47.826 0.00 0.00 0.00 3.69
3222 4603 4.142359 GGCGATGACATGTATCTAGGGTAG 60.142 50.000 0.00 0.00 0.00 3.18
3223 4604 4.142359 GCGATGACATGTATCTAGGGTAGG 60.142 50.000 0.00 0.00 0.00 3.18
3224 4605 4.399618 CGATGACATGTATCTAGGGTAGGG 59.600 50.000 0.00 0.00 0.00 3.53
3225 4606 4.827036 TGACATGTATCTAGGGTAGGGT 57.173 45.455 0.00 0.00 0.00 4.34
3226 4607 4.737578 TGACATGTATCTAGGGTAGGGTC 58.262 47.826 0.00 0.00 0.00 4.46
3227 4608 4.419200 TGACATGTATCTAGGGTAGGGTCT 59.581 45.833 0.00 0.00 0.00 3.85
3228 4609 5.103215 TGACATGTATCTAGGGTAGGGTCTT 60.103 44.000 0.00 0.00 0.00 3.01
3229 4610 6.103649 TGACATGTATCTAGGGTAGGGTCTTA 59.896 42.308 0.00 0.00 0.00 2.10
3230 4611 6.553857 ACATGTATCTAGGGTAGGGTCTTAG 58.446 44.000 0.00 0.00 0.00 2.18
3231 4612 5.595814 TGTATCTAGGGTAGGGTCTTAGG 57.404 47.826 0.00 0.00 0.00 2.69
3232 4613 3.546429 ATCTAGGGTAGGGTCTTAGGC 57.454 52.381 0.00 0.00 0.00 3.93
3233 4614 1.502474 TCTAGGGTAGGGTCTTAGGCC 59.498 57.143 0.00 0.00 0.00 5.19
3234 4615 1.504221 CTAGGGTAGGGTCTTAGGCCT 59.496 57.143 11.78 11.78 0.00 5.19
3235 4616 0.031010 AGGGTAGGGTCTTAGGCCTG 60.031 60.000 17.99 0.00 0.00 4.85
3236 4617 0.031414 GGGTAGGGTCTTAGGCCTGA 60.031 60.000 17.99 6.19 0.00 3.86
3237 4618 1.121378 GGTAGGGTCTTAGGCCTGAC 58.879 60.000 17.99 15.40 0.00 3.51
3250 4631 3.686916 GGCCTGACCTATATGTCCTTC 57.313 52.381 0.00 0.00 34.25 3.46
3251 4632 2.303311 GGCCTGACCTATATGTCCTTCC 59.697 54.545 0.00 1.25 34.25 3.46
3252 4633 2.303311 GCCTGACCTATATGTCCTTCCC 59.697 54.545 5.79 0.00 34.25 3.97
3253 4634 3.587498 CCTGACCTATATGTCCTTCCCA 58.413 50.000 5.79 0.00 34.25 4.37
3254 4635 3.973973 CCTGACCTATATGTCCTTCCCAA 59.026 47.826 5.79 0.00 34.25 4.12
3255 4636 4.040952 CCTGACCTATATGTCCTTCCCAAG 59.959 50.000 5.79 0.00 34.25 3.61
3265 4646 3.021451 CTTCCCAAGGACACCACAC 57.979 57.895 0.00 0.00 0.00 3.82
3266 4647 0.182537 CTTCCCAAGGACACCACACA 59.817 55.000 0.00 0.00 0.00 3.72
3267 4648 0.626382 TTCCCAAGGACACCACACAA 59.374 50.000 0.00 0.00 0.00 3.33
3268 4649 0.182537 TCCCAAGGACACCACACAAG 59.817 55.000 0.00 0.00 0.00 3.16
3269 4650 0.182537 CCCAAGGACACCACACAAGA 59.817 55.000 0.00 0.00 0.00 3.02
3270 4651 1.597742 CCAAGGACACCACACAAGAG 58.402 55.000 0.00 0.00 0.00 2.85
3271 4652 1.597742 CAAGGACACCACACAAGAGG 58.402 55.000 0.00 0.00 0.00 3.69
3272 4653 0.179018 AAGGACACCACACAAGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
3273 4654 1.056700 AGGACACCACACAAGAGGCT 61.057 55.000 0.00 0.00 0.00 4.58
3274 4655 0.685097 GGACACCACACAAGAGGCTA 59.315 55.000 0.00 0.00 0.00 3.93
3275 4656 1.071699 GGACACCACACAAGAGGCTAA 59.928 52.381 0.00 0.00 0.00 3.09
3276 4657 2.417719 GACACCACACAAGAGGCTAAG 58.582 52.381 0.00 0.00 0.00 2.18
3277 4658 1.072331 ACACCACACAAGAGGCTAAGG 59.928 52.381 0.00 0.00 0.00 2.69
3278 4659 0.036875 ACCACACAAGAGGCTAAGGC 59.963 55.000 0.00 0.00 37.82 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.632679 TCTTGCTTGTGACTTGATTTTCTTTAT 58.367 29.630 0.00 0.00 0.00 1.40
13 14 6.866480 TCTTGCTTGTGACTTGATTTTCTTT 58.134 32.000 0.00 0.00 0.00 2.52
65 66 1.440938 TTTCGAAGGTGCGGGTGTTG 61.441 55.000 0.00 0.00 0.00 3.33
88 89 1.590147 GTGTTCTCCGGTCCGTGAT 59.410 57.895 11.06 0.00 0.00 3.06
94 95 0.391597 TTGTCTGGTGTTCTCCGGTC 59.608 55.000 0.00 0.00 35.51 4.79
97 98 1.605712 GGTCTTGTCTGGTGTTCTCCG 60.606 57.143 0.00 0.00 0.00 4.63
170 171 6.370442 TCGATAAGGATTTGTTTGTAGGTGTG 59.630 38.462 0.00 0.00 0.00 3.82
194 195 5.359576 TGCCCATGGATTTGTAATACACTTC 59.640 40.000 15.22 0.00 0.00 3.01
197 198 5.590530 TTGCCCATGGATTTGTAATACAC 57.409 39.130 15.22 0.00 0.00 2.90
200 201 7.301420 TCCTAATTGCCCATGGATTTGTAATA 58.699 34.615 15.22 0.00 0.00 0.98
221 222 4.199310 CGAATTGGGATTGCTTCTTCCTA 58.801 43.478 0.00 0.00 32.34 2.94
240 241 0.599204 GTCAAGTCCGCCTCAACGAA 60.599 55.000 0.00 0.00 34.06 3.85
277 278 1.452108 CCCGCTCCAAATCCAGGAC 60.452 63.158 0.00 0.00 0.00 3.85
339 340 2.584391 GCCACTTCCTCTCACCGGT 61.584 63.158 0.00 0.00 0.00 5.28
391 392 2.031157 CCATGACGGACAAGGTTTGTTC 60.031 50.000 0.00 0.00 45.52 3.18
550 551 0.985490 GCCAGACCTTCCTCCTCCAT 60.985 60.000 0.00 0.00 0.00 3.41
564 565 4.041321 CCATTATCTCAAGATCCAGCCAGA 59.959 45.833 0.00 0.00 36.05 3.86
569 570 6.267242 TCTGTCTCCATTATCTCAAGATCCAG 59.733 42.308 0.00 0.00 36.05 3.86
603 608 4.393834 CGTCCTCTCTCTCCATTATCTCA 58.606 47.826 0.00 0.00 0.00 3.27
604 609 3.756434 CCGTCCTCTCTCTCCATTATCTC 59.244 52.174 0.00 0.00 0.00 2.75
605 610 3.499563 CCCGTCCTCTCTCTCCATTATCT 60.500 52.174 0.00 0.00 0.00 1.98
622 630 0.397535 TATCCACACCTACCCCCGTC 60.398 60.000 0.00 0.00 0.00 4.79
628 636 6.318900 CCATTTTCTTTCTATCCACACCTACC 59.681 42.308 0.00 0.00 0.00 3.18
631 639 5.711976 CACCATTTTCTTTCTATCCACACCT 59.288 40.000 0.00 0.00 0.00 4.00
640 648 5.319043 ACCCACTCACCATTTTCTTTCTA 57.681 39.130 0.00 0.00 0.00 2.10
651 659 0.250684 TACGTCGTACCCACTCACCA 60.251 55.000 0.00 0.00 0.00 4.17
654 662 0.036732 ACCTACGTCGTACCCACTCA 59.963 55.000 0.00 0.00 0.00 3.41
658 666 1.679139 CCATACCTACGTCGTACCCA 58.321 55.000 0.00 0.00 0.00 4.51
667 675 0.603707 CATGCCTGCCCATACCTACG 60.604 60.000 0.00 0.00 0.00 3.51
729 742 5.262009 CCATGCAATTATCCCTCATCTCAT 58.738 41.667 0.00 0.00 0.00 2.90
730 743 4.507869 CCCATGCAATTATCCCTCATCTCA 60.508 45.833 0.00 0.00 0.00 3.27
731 744 4.015084 CCCATGCAATTATCCCTCATCTC 58.985 47.826 0.00 0.00 0.00 2.75
820 833 7.409697 CGAATATGGTGAATTCTAACTGGTTG 58.590 38.462 7.05 0.00 32.29 3.77
852 865 3.015327 GAGCCGTGTAGAGAGTAAGGAA 58.985 50.000 0.00 0.00 0.00 3.36
858 871 2.026636 AGAAGAGAGCCGTGTAGAGAGT 60.027 50.000 0.00 0.00 0.00 3.24
902 918 6.050432 CCTAGGCTATAGGAGTGATACGTAG 58.950 48.000 9.25 0.00 36.85 3.51
903 919 5.486775 ACCTAGGCTATAGGAGTGATACGTA 59.513 44.000 18.72 0.00 38.09 3.57
904 920 4.289148 ACCTAGGCTATAGGAGTGATACGT 59.711 45.833 18.72 0.00 38.09 3.57
979 1002 0.036952 GCTAGCTGCTTCCTGTGACA 60.037 55.000 7.79 0.00 38.95 3.58
1213 1248 1.459975 CACGACGGAGATATCGATCGT 59.540 52.381 15.94 16.58 40.86 3.73
1341 1391 1.935199 TCAAACAAGAACCGGTCGAAC 59.065 47.619 8.04 0.00 0.00 3.95
1932 2024 0.682532 TCATGCCTGAGAGCTCGAGT 60.683 55.000 15.13 0.23 0.00 4.18
2303 2408 3.341823 CATCAATCTCCCGATGGATTCC 58.658 50.000 0.00 0.00 38.07 3.01
2517 2622 3.844090 GAGCTCTGCCCCCGAGAC 61.844 72.222 6.43 0.00 0.00 3.36
2526 2633 2.235845 TAGCATGACATGAGCTCTGC 57.764 50.000 19.76 14.85 39.68 4.26
2527 2634 3.794717 ACTTAGCATGACATGAGCTCTG 58.205 45.455 19.76 12.83 39.68 3.35
2528 2635 3.450096 TGACTTAGCATGACATGAGCTCT 59.550 43.478 19.76 8.83 39.68 4.09
2529 2636 3.790091 TGACTTAGCATGACATGAGCTC 58.210 45.455 19.76 6.82 39.68 4.09
2531 2638 3.937706 ACTTGACTTAGCATGACATGAGC 59.062 43.478 19.76 4.58 0.00 4.26
2544 2651 5.130311 TGGAGCCATGCTATAACTTGACTTA 59.870 40.000 0.00 0.00 39.88 2.24
2553 2660 5.308976 TCATCTTTGGAGCCATGCTATAA 57.691 39.130 0.00 0.00 39.88 0.98
2571 2678 8.728337 TCCACGGTAGTATATACTGTATCATC 57.272 38.462 23.09 4.48 37.10 2.92
2592 2699 3.057734 CAAGACTTGGAACGTACTCCAC 58.942 50.000 8.51 0.00 45.37 4.02
2636 2743 5.941555 AACAGAAAACCCCATGTAACAAA 57.058 34.783 0.00 0.00 0.00 2.83
2637 2744 5.450688 CGAAACAGAAAACCCCATGTAACAA 60.451 40.000 0.00 0.00 0.00 2.83
2638 2745 4.036971 CGAAACAGAAAACCCCATGTAACA 59.963 41.667 0.00 0.00 0.00 2.41
2639 2746 4.542735 CGAAACAGAAAACCCCATGTAAC 58.457 43.478 0.00 0.00 0.00 2.50
2648 2765 2.552315 TGAGATGCCGAAACAGAAAACC 59.448 45.455 0.00 0.00 0.00 3.27
2673 2790 0.661020 GGTGTTTCGGTGTCACAAGG 59.339 55.000 5.12 0.00 34.27 3.61
2698 2823 7.616313 ACAAATTGAAGTGTTTCCCAACTTAA 58.384 30.769 0.00 0.00 33.58 1.85
2702 2827 6.735678 AAACAAATTGAAGTGTTTCCCAAC 57.264 33.333 0.00 0.00 42.80 3.77
2761 2886 9.814899 TCACATGATCAAAAGTACAATTGTTTT 57.185 25.926 17.78 9.38 0.00 2.43
2762 2887 9.814899 TTCACATGATCAAAAGTACAATTGTTT 57.185 25.926 17.78 2.72 0.00 2.83
2763 2888 9.985730 ATTCACATGATCAAAAGTACAATTGTT 57.014 25.926 17.78 0.00 0.00 2.83
2764 2889 9.985730 AATTCACATGATCAAAAGTACAATTGT 57.014 25.926 16.68 16.68 0.00 2.71
2790 2927 4.065088 CAAGTTAGCAAGGCTGTGAGTAA 58.935 43.478 0.07 0.00 40.10 2.24
2799 2936 3.381272 TGAATATGGCAAGTTAGCAAGGC 59.619 43.478 0.00 0.00 35.83 4.35
2814 2951 5.592688 TGCTCCATCCATATGCATGAATATG 59.407 40.000 22.51 22.51 39.33 1.78
2815 2952 5.762279 TGCTCCATCCATATGCATGAATAT 58.238 37.500 10.16 0.00 33.67 1.28
2829 2976 8.401490 AGATTTAAGAAATACATGCTCCATCC 57.599 34.615 0.00 0.00 0.00 3.51
2830 2977 9.890352 GAAGATTTAAGAAATACATGCTCCATC 57.110 33.333 0.00 0.00 0.00 3.51
2865 3012 5.753921 CAGACTTCGGAGTTTCAGTTTAGTT 59.246 40.000 0.00 0.00 35.88 2.24
2867 3014 5.529791 TCAGACTTCGGAGTTTCAGTTTAG 58.470 41.667 0.00 0.00 35.88 1.85
2868 3015 5.524971 TCAGACTTCGGAGTTTCAGTTTA 57.475 39.130 0.00 0.00 35.88 2.01
2872 3019 3.983741 ACTTCAGACTTCGGAGTTTCAG 58.016 45.455 0.00 0.00 35.88 3.02
2952 4333 0.037590 TGGGAAAGGTGAACATCCGG 59.962 55.000 0.00 0.00 32.56 5.14
2957 4338 2.818751 ACAAGTGGGAAAGGTGAACA 57.181 45.000 0.00 0.00 0.00 3.18
3021 4402 2.034066 AGTGGGCCATGTGAACCG 59.966 61.111 10.70 0.00 0.00 4.44
3042 4423 5.066375 TCAAATAAGCATCAAATCCGGACAG 59.934 40.000 6.12 0.00 0.00 3.51
3078 4459 3.551846 ACGGTTGAGAAACTGGTCATTT 58.448 40.909 2.75 0.00 33.42 2.32
3099 4480 3.319689 TGTTCAGACATGTTCACGGACTA 59.680 43.478 0.00 0.00 0.00 2.59
3112 4493 2.028567 TGTCCGCATACATGTTCAGACA 60.029 45.455 2.30 8.11 40.71 3.41
3117 4498 3.128589 ACCAAATGTCCGCATACATGTTC 59.871 43.478 2.30 0.00 39.98 3.18
3160 4541 0.898789 ACGCCTAGCTACACCACTGT 60.899 55.000 0.00 0.00 0.00 3.55
3167 4548 2.611971 CCTTGTTCAACGCCTAGCTACA 60.612 50.000 0.00 0.00 0.00 2.74
3177 4558 1.503818 CCGGACCACCTTGTTCAACG 61.504 60.000 0.00 0.00 0.00 4.10
3178 4559 0.179040 TCCGGACCACCTTGTTCAAC 60.179 55.000 0.00 0.00 0.00 3.18
3179 4560 0.768622 ATCCGGACCACCTTGTTCAA 59.231 50.000 6.12 0.00 0.00 2.69
3180 4561 0.036164 CATCCGGACCACCTTGTTCA 59.964 55.000 6.12 0.00 0.00 3.18
3181 4562 0.676782 CCATCCGGACCACCTTGTTC 60.677 60.000 6.12 0.00 0.00 3.18
3182 4563 1.378762 CCATCCGGACCACCTTGTT 59.621 57.895 6.12 0.00 0.00 2.83
3183 4564 3.077907 CCATCCGGACCACCTTGT 58.922 61.111 6.12 0.00 0.00 3.16
3184 4565 2.438434 GCCATCCGGACCACCTTG 60.438 66.667 6.12 0.00 0.00 3.61
3185 4566 4.096003 CGCCATCCGGACCACCTT 62.096 66.667 6.12 0.00 0.00 3.50
3187 4568 3.861797 ATCGCCATCCGGACCACC 61.862 66.667 6.12 0.00 37.59 4.61
3188 4569 2.588877 CATCGCCATCCGGACCAC 60.589 66.667 6.12 0.00 37.59 4.16
3189 4570 2.762043 TCATCGCCATCCGGACCA 60.762 61.111 6.12 0.00 37.59 4.02
3190 4571 2.280186 GTCATCGCCATCCGGACC 60.280 66.667 6.12 0.00 37.59 4.46
3191 4572 1.069765 ATGTCATCGCCATCCGGAC 59.930 57.895 6.12 0.00 37.59 4.79
3192 4573 1.069596 CATGTCATCGCCATCCGGA 59.930 57.895 6.61 6.61 37.59 5.14
3193 4574 0.033366 TACATGTCATCGCCATCCGG 59.967 55.000 0.00 0.00 37.59 5.14
3194 4575 1.995484 GATACATGTCATCGCCATCCG 59.005 52.381 0.00 0.00 38.61 4.18
3195 4576 3.325293 AGATACATGTCATCGCCATCC 57.675 47.619 0.00 0.00 0.00 3.51
3196 4577 4.428209 CCTAGATACATGTCATCGCCATC 58.572 47.826 0.00 0.00 0.00 3.51
3197 4578 3.196469 CCCTAGATACATGTCATCGCCAT 59.804 47.826 0.00 0.00 0.00 4.40
3198 4579 2.562738 CCCTAGATACATGTCATCGCCA 59.437 50.000 0.00 0.00 0.00 5.69
3199 4580 2.563179 ACCCTAGATACATGTCATCGCC 59.437 50.000 0.00 0.00 0.00 5.54
3200 4581 3.944055 ACCCTAGATACATGTCATCGC 57.056 47.619 0.00 0.00 0.00 4.58
3201 4582 4.399618 CCCTACCCTAGATACATGTCATCG 59.600 50.000 0.00 0.00 0.00 3.84
3202 4583 5.334421 ACCCTACCCTAGATACATGTCATC 58.666 45.833 0.00 4.47 0.00 2.92
3203 4584 5.076598 AGACCCTACCCTAGATACATGTCAT 59.923 44.000 0.00 0.00 0.00 3.06
3204 4585 4.419200 AGACCCTACCCTAGATACATGTCA 59.581 45.833 0.00 0.00 0.00 3.58
3205 4586 5.000570 AGACCCTACCCTAGATACATGTC 57.999 47.826 0.00 0.00 0.00 3.06
3206 4587 5.420215 AAGACCCTACCCTAGATACATGT 57.580 43.478 2.69 2.69 0.00 3.21
3207 4588 5.952947 CCTAAGACCCTACCCTAGATACATG 59.047 48.000 0.00 0.00 0.00 3.21
3208 4589 5.518725 GCCTAAGACCCTACCCTAGATACAT 60.519 48.000 0.00 0.00 0.00 2.29
3209 4590 4.202652 GCCTAAGACCCTACCCTAGATACA 60.203 50.000 0.00 0.00 0.00 2.29
3210 4591 4.343231 GCCTAAGACCCTACCCTAGATAC 58.657 52.174 0.00 0.00 0.00 2.24
3211 4592 3.336088 GGCCTAAGACCCTACCCTAGATA 59.664 52.174 0.00 0.00 0.00 1.98
3212 4593 2.112151 GGCCTAAGACCCTACCCTAGAT 59.888 54.545 0.00 0.00 0.00 1.98
3213 4594 1.502474 GGCCTAAGACCCTACCCTAGA 59.498 57.143 0.00 0.00 0.00 2.43
3214 4595 1.504221 AGGCCTAAGACCCTACCCTAG 59.496 57.143 1.29 0.00 0.00 3.02
3215 4596 1.219724 CAGGCCTAAGACCCTACCCTA 59.780 57.143 3.98 0.00 0.00 3.53
3216 4597 0.031010 CAGGCCTAAGACCCTACCCT 60.031 60.000 3.98 0.00 0.00 4.34
3217 4598 0.031414 TCAGGCCTAAGACCCTACCC 60.031 60.000 3.98 0.00 0.00 3.69
3218 4599 1.121378 GTCAGGCCTAAGACCCTACC 58.879 60.000 3.98 0.00 0.00 3.18
3219 4600 1.121378 GGTCAGGCCTAAGACCCTAC 58.879 60.000 25.46 6.30 46.79 3.18
3220 4601 3.629220 GGTCAGGCCTAAGACCCTA 57.371 57.895 25.46 0.00 46.79 3.53
3221 4602 4.482431 GGTCAGGCCTAAGACCCT 57.518 61.111 25.46 0.00 46.79 4.34
3230 4611 2.303311 GGAAGGACATATAGGTCAGGCC 59.697 54.545 18.46 11.72 39.59 5.19
3231 4612 2.303311 GGGAAGGACATATAGGTCAGGC 59.697 54.545 18.46 6.96 39.59 4.85
3232 4613 3.587498 TGGGAAGGACATATAGGTCAGG 58.413 50.000 18.46 0.00 39.59 3.86
3233 4614 5.220710 CTTGGGAAGGACATATAGGTCAG 57.779 47.826 18.46 2.60 39.59 3.51
3247 4628 0.182537 TGTGTGGTGTCCTTGGGAAG 59.817 55.000 0.00 0.00 31.38 3.46
3248 4629 0.626382 TTGTGTGGTGTCCTTGGGAA 59.374 50.000 0.00 0.00 31.38 3.97
3249 4630 0.182537 CTTGTGTGGTGTCCTTGGGA 59.817 55.000 0.00 0.00 0.00 4.37
3250 4631 0.182537 TCTTGTGTGGTGTCCTTGGG 59.817 55.000 0.00 0.00 0.00 4.12
3251 4632 1.597742 CTCTTGTGTGGTGTCCTTGG 58.402 55.000 0.00 0.00 0.00 3.61
3252 4633 1.597742 CCTCTTGTGTGGTGTCCTTG 58.402 55.000 0.00 0.00 0.00 3.61
3253 4634 0.179018 GCCTCTTGTGTGGTGTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
3254 4635 1.056700 AGCCTCTTGTGTGGTGTCCT 61.057 55.000 0.00 0.00 0.00 3.85
3255 4636 0.685097 TAGCCTCTTGTGTGGTGTCC 59.315 55.000 0.00 0.00 0.00 4.02
3256 4637 2.417719 CTTAGCCTCTTGTGTGGTGTC 58.582 52.381 0.00 0.00 0.00 3.67
3257 4638 1.072331 CCTTAGCCTCTTGTGTGGTGT 59.928 52.381 0.00 0.00 0.00 4.16
3258 4639 1.813513 CCTTAGCCTCTTGTGTGGTG 58.186 55.000 0.00 0.00 0.00 4.17
3259 4640 0.036875 GCCTTAGCCTCTTGTGTGGT 59.963 55.000 0.00 0.00 0.00 4.16
3260 4641 2.859992 GCCTTAGCCTCTTGTGTGG 58.140 57.895 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.