Multiple sequence alignment - TraesCS1B01G272300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G272300 chr1B 100.000 2579 0 0 1 2579 478482805 478480227 0.000000e+00 4763.0
1 TraesCS1B01G272300 chr1D 94.046 2553 105 22 2 2520 355509453 355506914 0.000000e+00 3829.0
2 TraesCS1B01G272300 chr1A 92.894 2350 94 23 1 2311 456233286 456230971 0.000000e+00 3347.0
3 TraesCS1B01G272300 chr1A 89.038 821 59 7 1726 2521 456230009 456229195 0.000000e+00 989.0
4 TraesCS1B01G272300 chr1A 87.912 182 10 3 2307 2488 456230700 456230531 1.210000e-48 204.0
5 TraesCS1B01G272300 chr7A 97.297 37 1 0 2540 2576 26677177 26677213 2.140000e-06 63.9
6 TraesCS1B01G272300 chr6A 100.000 33 0 0 2544 2576 159914451 159914483 7.710000e-06 62.1
7 TraesCS1B01G272300 chr5B 100.000 32 0 0 2545 2576 669548366 669548397 2.770000e-05 60.2
8 TraesCS1B01G272300 chr4A 100.000 32 0 0 2545 2576 62535671 62535640 2.770000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G272300 chr1B 478480227 478482805 2578 True 4763.000000 4763 100.000 1 2579 1 chr1B.!!$R1 2578
1 TraesCS1B01G272300 chr1D 355506914 355509453 2539 True 3829.000000 3829 94.046 2 2520 1 chr1D.!!$R1 2518
2 TraesCS1B01G272300 chr1A 456229195 456233286 4091 True 1513.333333 3347 89.948 1 2521 3 chr1A.!!$R1 2520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 983 0.328258 TGGGCCACTAAAGCTCTTCC 59.672 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 4136 0.098025 ATATGTGAAAAACGGCGCGG 59.902 50.0 14.03 14.03 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.499289 ACAGCGGTGATTCTGAGATCTT 59.501 45.455 23.44 0.00 34.57 2.40
59 60 6.983307 CGGTGATTCTGAGATCTTATCTTGTT 59.017 38.462 0.00 0.00 40.38 2.83
81 82 4.250464 TCCGCGAAATGACTACTGAAAAT 58.750 39.130 8.23 0.00 0.00 1.82
252 258 8.641155 TCGTAGTACATAATTTTGTGACGAAAG 58.359 33.333 21.46 10.23 37.48 2.62
315 321 0.620121 AGAGGGGAGGGCAAGAGAAG 60.620 60.000 0.00 0.00 0.00 2.85
316 322 1.617839 AGGGGAGGGCAAGAGAAGG 60.618 63.158 0.00 0.00 0.00 3.46
317 323 2.684499 GGGGAGGGCAAGAGAAGGG 61.684 68.421 0.00 0.00 0.00 3.95
318 324 2.684499 GGGAGGGCAAGAGAAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
319 325 2.684499 GGAGGGCAAGAGAAGGGGG 61.684 68.421 0.00 0.00 0.00 5.40
470 477 1.072266 ACATGGCCACCCTCTTGTTA 58.928 50.000 8.16 0.00 0.00 2.41
471 478 1.427368 ACATGGCCACCCTCTTGTTAA 59.573 47.619 8.16 0.00 0.00 2.01
701 712 7.434897 CAGTTTTCTAAGCATTAACTGTTGCAA 59.565 33.333 2.69 0.00 40.29 4.08
722 733 5.220605 GCAATTACCTTTACGTCCATCAGTC 60.221 44.000 0.00 0.00 0.00 3.51
966 978 2.603075 TCATTTGGGCCACTAAAGCT 57.397 45.000 5.23 0.00 30.28 3.74
971 983 0.328258 TGGGCCACTAAAGCTCTTCC 59.672 55.000 0.00 0.00 0.00 3.46
1308 1320 0.036952 CGTCAGATTGCCAGGTGAGT 60.037 55.000 0.00 0.00 0.00 3.41
1315 1327 1.131638 TTGCCAGGTGAGTGAAGAGT 58.868 50.000 0.00 0.00 0.00 3.24
1410 1425 2.421399 GGGGCAAGAGGAGCAATGC 61.421 63.158 0.00 0.00 38.06 3.56
1439 1454 3.701454 GGAGCAAGACCTCCTCGT 58.299 61.111 1.07 0.00 46.39 4.18
1440 1455 1.976112 GGAGCAAGACCTCCTCGTT 59.024 57.895 1.07 0.00 46.39 3.85
1464 1479 1.446272 CCTGCCGGAGTTCGTTCTC 60.446 63.158 5.05 2.10 37.11 2.87
1492 1507 4.376146 GAGGGACTTCATAGACATCTTGC 58.624 47.826 0.00 0.00 41.55 4.01
1501 1516 0.387202 AGACATCTTGCCGGAGATCG 59.613 55.000 5.05 3.53 34.20 3.69
1612 1627 8.143835 AGAGGTTTGGTGAAGTTAAAATCATTG 58.856 33.333 0.00 0.00 0.00 2.82
1894 1912 9.091220 ACCTAGTGTTTTAGACTTGAGTAGATT 57.909 33.333 0.00 0.00 0.00 2.40
1957 3539 9.511404 AGGTGGGGTATACTTAAGTTACTTTAT 57.489 33.333 14.49 2.45 0.00 1.40
1979 3562 4.737855 ACAGGTTAGTGCACTATACAGG 57.262 45.455 26.54 20.60 0.00 4.00
1982 3565 3.705072 AGGTTAGTGCACTATACAGGACC 59.295 47.826 26.54 26.08 0.00 4.46
2081 3688 3.896648 TCTGAATCAAAAACTCGGCAC 57.103 42.857 0.00 0.00 0.00 5.01
2093 3700 0.518636 CTCGGCACATGGTTCAACAG 59.481 55.000 0.00 0.00 0.00 3.16
2129 3736 3.315191 GTCTTTTAGTTTGTGCAGCTGGA 59.685 43.478 17.12 10.66 0.00 3.86
2167 3774 5.990996 TGATGTTTGATTTGGAAAAAGGCTC 59.009 36.000 0.00 0.00 0.00 4.70
2175 3782 4.371624 TTGGAAAAAGGCTCTGAGATCA 57.628 40.909 9.28 0.00 0.00 2.92
2214 3827 7.013846 CCTCTATTAGTAGCTTCTAGTGCTGTT 59.986 40.741 18.37 11.13 41.32 3.16
2241 3854 4.093743 ACAAATGTAGTTTTGGGGATCCC 58.906 43.478 23.95 23.95 45.71 3.85
2302 3915 7.357303 ACATTTTAGCGTACTACTGTTTTTGG 58.643 34.615 0.00 0.00 0.00 3.28
2313 3926 6.301486 ACTACTGTTTTTGGGGTTTAGGTAG 58.699 40.000 0.00 0.00 0.00 3.18
2331 3944 4.929808 AGGTAGCTGAACAAAAGATACACG 59.070 41.667 0.00 0.00 38.09 4.49
2443 4057 2.615447 ACATGCTGACACTTGACACTTG 59.385 45.455 0.00 0.00 0.00 3.16
2474 4088 0.454600 CACATGCCTCCATTCACTGC 59.545 55.000 0.00 0.00 0.00 4.40
2481 4095 1.815003 CCTCCATTCACTGCTGGAAAC 59.185 52.381 0.00 0.00 40.92 2.78
2521 4135 3.474806 CGGCTAACGCTCACCTTG 58.525 61.111 0.00 0.00 36.09 3.61
2522 4136 2.740714 CGGCTAACGCTCACCTTGC 61.741 63.158 0.00 0.00 36.09 4.01
2523 4137 2.399356 GGCTAACGCTCACCTTGCC 61.399 63.158 0.00 0.00 36.09 4.52
2524 4138 2.740714 GCTAACGCTCACCTTGCCG 61.741 63.158 0.00 0.00 0.00 5.69
2525 4139 2.740714 CTAACGCTCACCTTGCCGC 61.741 63.158 0.00 0.00 0.00 6.53
2534 4148 4.639171 CCTTGCCGCGCCGTTTTT 62.639 61.111 0.00 0.00 0.00 1.94
2535 4149 3.097114 CTTGCCGCGCCGTTTTTC 61.097 61.111 0.00 0.00 0.00 2.29
2536 4150 3.815569 CTTGCCGCGCCGTTTTTCA 62.816 57.895 0.00 0.00 0.00 2.69
2537 4151 4.615834 TGCCGCGCCGTTTTTCAC 62.616 61.111 0.00 0.00 0.00 3.18
2538 4152 4.615834 GCCGCGCCGTTTTTCACA 62.616 61.111 0.00 0.00 0.00 3.58
2539 4153 2.254051 CCGCGCCGTTTTTCACAT 59.746 55.556 0.00 0.00 0.00 3.21
2540 4154 1.498166 CCGCGCCGTTTTTCACATA 59.502 52.632 0.00 0.00 0.00 2.29
2541 4155 0.098025 CCGCGCCGTTTTTCACATAT 59.902 50.000 0.00 0.00 0.00 1.78
2542 4156 1.179332 CGCGCCGTTTTTCACATATG 58.821 50.000 0.00 0.00 0.00 1.78
2543 4157 1.201976 CGCGCCGTTTTTCACATATGA 60.202 47.619 10.38 0.00 0.00 2.15
2544 4158 2.538737 CGCGCCGTTTTTCACATATGAT 60.539 45.455 10.38 0.00 33.85 2.45
2545 4159 3.302805 CGCGCCGTTTTTCACATATGATA 60.303 43.478 10.38 0.00 33.85 2.15
2546 4160 3.966218 GCGCCGTTTTTCACATATGATAC 59.034 43.478 10.38 0.00 33.85 2.24
2547 4161 4.260620 GCGCCGTTTTTCACATATGATACT 60.261 41.667 10.38 0.00 33.85 2.12
2548 4162 5.432157 CGCCGTTTTTCACATATGATACTC 58.568 41.667 10.38 0.00 33.85 2.59
2549 4163 5.558273 CGCCGTTTTTCACATATGATACTCC 60.558 44.000 10.38 0.00 33.85 3.85
2550 4164 5.277828 GCCGTTTTTCACATATGATACTCCC 60.278 44.000 10.38 0.00 33.85 4.30
2551 4165 6.055588 CCGTTTTTCACATATGATACTCCCT 58.944 40.000 10.38 0.00 33.85 4.20
2552 4166 6.202954 CCGTTTTTCACATATGATACTCCCTC 59.797 42.308 10.38 0.00 33.85 4.30
2553 4167 6.202954 CGTTTTTCACATATGATACTCCCTCC 59.797 42.308 10.38 0.00 33.85 4.30
2554 4168 5.468540 TTTCACATATGATACTCCCTCCG 57.531 43.478 10.38 0.00 33.85 4.63
2555 4169 4.114015 TCACATATGATACTCCCTCCGT 57.886 45.455 10.38 0.00 0.00 4.69
2556 4170 4.480115 TCACATATGATACTCCCTCCGTT 58.520 43.478 10.38 0.00 0.00 4.44
2557 4171 4.523173 TCACATATGATACTCCCTCCGTTC 59.477 45.833 10.38 0.00 0.00 3.95
2558 4172 3.833070 ACATATGATACTCCCTCCGTTCC 59.167 47.826 10.38 0.00 0.00 3.62
2559 4173 2.471815 ATGATACTCCCTCCGTTCCA 57.528 50.000 0.00 0.00 0.00 3.53
2560 4174 2.241281 TGATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
2561 4175 2.542550 TGATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
2562 4176 2.907696 TGATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2563 4177 3.521937 TGATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2564 4178 2.491675 ACTCCCTCCGTTCCAAAATC 57.508 50.000 0.00 0.00 0.00 2.17
2565 4179 1.985895 ACTCCCTCCGTTCCAAAATCT 59.014 47.619 0.00 0.00 0.00 2.40
2566 4180 3.178865 ACTCCCTCCGTTCCAAAATCTA 58.821 45.455 0.00 0.00 0.00 1.98
2567 4181 3.585732 ACTCCCTCCGTTCCAAAATCTAA 59.414 43.478 0.00 0.00 0.00 2.10
2568 4182 4.227527 ACTCCCTCCGTTCCAAAATCTAAT 59.772 41.667 0.00 0.00 0.00 1.73
2569 4183 4.523083 TCCCTCCGTTCCAAAATCTAATG 58.477 43.478 0.00 0.00 0.00 1.90
2570 4184 3.066760 CCCTCCGTTCCAAAATCTAATGC 59.933 47.826 0.00 0.00 0.00 3.56
2571 4185 3.242739 CCTCCGTTCCAAAATCTAATGCG 60.243 47.826 0.00 0.00 0.00 4.73
2572 4186 2.096819 TCCGTTCCAAAATCTAATGCGC 59.903 45.455 0.00 0.00 0.00 6.09
2573 4187 2.159448 CCGTTCCAAAATCTAATGCGCA 60.159 45.455 14.96 14.96 0.00 6.09
2574 4188 3.489059 CCGTTCCAAAATCTAATGCGCAT 60.489 43.478 19.28 19.28 0.00 4.73
2575 4189 4.260990 CCGTTCCAAAATCTAATGCGCATA 60.261 41.667 25.61 8.84 0.00 3.14
2576 4190 5.270083 CGTTCCAAAATCTAATGCGCATAA 58.730 37.500 25.61 12.90 0.00 1.90
2577 4191 5.914635 CGTTCCAAAATCTAATGCGCATAAT 59.085 36.000 25.61 14.69 0.00 1.28
2578 4192 6.129378 CGTTCCAAAATCTAATGCGCATAATG 60.129 38.462 25.61 16.24 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.440856 GGAACAAGATAAGATCTCAGAATCACC 59.559 40.741 0.00 0.00 39.08 4.02
51 52 3.857052 AGTCATTTCGCGGAACAAGATA 58.143 40.909 0.00 0.00 0.00 1.98
59 60 3.306917 TTTCAGTAGTCATTTCGCGGA 57.693 42.857 6.13 0.00 0.00 5.54
182 184 9.944663 TGCTTTGTGTTTACTGATTACTAAAAG 57.055 29.630 0.00 0.00 0.00 2.27
252 258 2.442236 TGATTTGCTCCAATCCTCCC 57.558 50.000 0.00 0.00 0.00 4.30
327 333 4.120589 GGAAGGTGAGACCGTAATGAATC 58.879 47.826 0.00 0.00 44.90 2.52
470 477 1.334384 GGCAGGGTTGGGTTGTGTTT 61.334 55.000 0.00 0.00 0.00 2.83
471 478 1.760480 GGCAGGGTTGGGTTGTGTT 60.760 57.895 0.00 0.00 0.00 3.32
701 712 5.421056 TGAGACTGATGGACGTAAAGGTAAT 59.579 40.000 0.00 0.00 0.00 1.89
722 733 6.738200 CGTATGCCGCAAATATTTAATCTGAG 59.262 38.462 0.00 0.00 0.00 3.35
826 838 3.792124 GCAAAGGTTGTGTGCTTGTCTAC 60.792 47.826 0.00 0.00 35.36 2.59
966 978 1.425066 ACAATCACAAGGGCAGGAAGA 59.575 47.619 0.00 0.00 0.00 2.87
971 983 0.524862 GCTCACAATCACAAGGGCAG 59.475 55.000 0.00 0.00 0.00 4.85
1284 1296 1.599047 CTGGCAATCTGACGACCCT 59.401 57.895 0.00 0.00 0.00 4.34
1290 1302 1.002430 TCACTCACCTGGCAATCTGAC 59.998 52.381 0.00 0.00 0.00 3.51
1308 1320 4.527509 GACTTCATCAGTCCACTCTTCA 57.472 45.455 0.00 0.00 45.84 3.02
1410 1425 1.905215 TCTTGCTCCTTCTTCCAGAGG 59.095 52.381 0.00 0.00 0.00 3.69
1464 1479 2.359531 GTCTATGAAGTCCCTCCTGTCG 59.640 54.545 0.00 0.00 0.00 4.35
1501 1516 2.939103 CGATCATGTTTTCCTCCTCACC 59.061 50.000 0.00 0.00 0.00 4.02
1638 1653 2.317973 CTACTACTACTCCCTTGCCCC 58.682 57.143 0.00 0.00 0.00 5.80
1844 1862 1.526575 AAAGAAGGGCCATGCACACG 61.527 55.000 6.18 0.00 32.33 4.49
1908 1926 6.296087 CCTTGAGATTGATAATGCTAGCCCTA 60.296 42.308 13.29 3.66 0.00 3.53
1918 1936 6.786843 ATACCCCACCTTGAGATTGATAAT 57.213 37.500 0.00 0.00 0.00 1.28
1919 1937 6.849697 AGTATACCCCACCTTGAGATTGATAA 59.150 38.462 0.00 0.00 0.00 1.75
1957 3539 5.359009 GTCCTGTATAGTGCACTAACCTGTA 59.641 44.000 29.26 14.50 31.39 2.74
1958 3540 4.159879 GTCCTGTATAGTGCACTAACCTGT 59.840 45.833 29.26 15.53 31.39 4.00
2004 3587 7.148188 CCACATCAAGTAGCTTACAATTCATGT 60.148 37.037 0.00 0.00 46.36 3.21
2005 3588 7.148188 ACCACATCAAGTAGCTTACAATTCATG 60.148 37.037 0.00 0.00 0.00 3.07
2007 3590 6.237901 ACCACATCAAGTAGCTTACAATTCA 58.762 36.000 0.00 0.00 0.00 2.57
2009 3592 7.524717 AAACCACATCAAGTAGCTTACAATT 57.475 32.000 0.00 0.00 0.00 2.32
2010 3593 7.524717 AAAACCACATCAAGTAGCTTACAAT 57.475 32.000 0.00 0.00 0.00 2.71
2081 3688 7.042456 CCGATTATTCTAGACTGTTGAACCATG 60.042 40.741 0.00 0.00 0.00 3.66
2129 3736 1.755179 ACATCAGCCGCTAAAAGCAT 58.245 45.000 0.00 0.00 42.58 3.79
2167 3774 4.822350 AGGTGCAAATCATGATGATCTCAG 59.178 41.667 9.46 0.80 35.76 3.35
2175 3782 7.605691 GCTACTAATAGAGGTGCAAATCATGAT 59.394 37.037 1.18 1.18 0.00 2.45
2214 3827 7.123547 GGATCCCCAAAACTACATTTGTTATGA 59.876 37.037 0.00 0.00 38.37 2.15
2241 3854 9.658799 TCTTCTCAGTATCTTCCAATAAACAAG 57.341 33.333 0.00 0.00 0.00 3.16
2270 3883 7.117379 ACAGTAGTACGCTAAAATGTTTTCCTC 59.883 37.037 0.00 0.00 0.00 3.71
2302 3915 5.067954 TCTTTTGTTCAGCTACCTAAACCC 58.932 41.667 0.00 0.00 0.00 4.11
2313 3926 3.071479 TCCCGTGTATCTTTTGTTCAGC 58.929 45.455 0.00 0.00 0.00 4.26
2331 3944 6.775594 AGTGGAGTTAAAATAAGCATTCCC 57.224 37.500 0.00 0.00 0.00 3.97
2413 4027 5.997129 TCAAGTGTCAGCATGTCAGATAAAA 59.003 36.000 0.00 0.00 34.17 1.52
2415 4029 4.931601 GTCAAGTGTCAGCATGTCAGATAA 59.068 41.667 0.00 0.00 34.17 1.75
2416 4030 4.021192 TGTCAAGTGTCAGCATGTCAGATA 60.021 41.667 0.00 0.00 34.17 1.98
2443 4057 2.611292 GAGGCATGTGCACACTTATCTC 59.389 50.000 24.37 19.09 44.36 2.75
2474 4088 4.524316 TCATGAAATTGCCTGTTTCCAG 57.476 40.909 0.00 0.00 35.28 3.86
2481 4095 5.911280 CGCTAGTTAATCATGAAATTGCCTG 59.089 40.000 0.00 0.00 0.00 4.85
2521 4135 2.515947 TATGTGAAAAACGGCGCGGC 62.516 55.000 24.49 24.49 0.00 6.53
2522 4136 0.098025 ATATGTGAAAAACGGCGCGG 59.902 50.000 14.03 14.03 0.00 6.46
2523 4137 1.179332 CATATGTGAAAAACGGCGCG 58.821 50.000 6.90 0.00 0.00 6.86
2524 4138 2.535934 TCATATGTGAAAAACGGCGC 57.464 45.000 6.90 0.00 0.00 6.53
2525 4139 5.403897 AGTATCATATGTGAAAAACGGCG 57.596 39.130 4.80 4.80 38.01 6.46
2526 4140 5.277828 GGGAGTATCATATGTGAAAAACGGC 60.278 44.000 1.90 0.00 38.01 5.68
2527 4141 6.055588 AGGGAGTATCATATGTGAAAAACGG 58.944 40.000 1.90 0.00 38.01 4.44
2528 4142 6.202954 GGAGGGAGTATCATATGTGAAAAACG 59.797 42.308 1.90 0.00 38.01 3.60
2529 4143 6.202954 CGGAGGGAGTATCATATGTGAAAAAC 59.797 42.308 1.90 0.00 38.01 2.43
2530 4144 6.126883 ACGGAGGGAGTATCATATGTGAAAAA 60.127 38.462 1.90 0.00 38.01 1.94
2531 4145 5.365605 ACGGAGGGAGTATCATATGTGAAAA 59.634 40.000 1.90 0.00 38.01 2.29
2532 4146 4.899457 ACGGAGGGAGTATCATATGTGAAA 59.101 41.667 1.90 0.00 38.01 2.69
2533 4147 4.480115 ACGGAGGGAGTATCATATGTGAA 58.520 43.478 1.90 0.00 38.01 3.18
2534 4148 4.114015 ACGGAGGGAGTATCATATGTGA 57.886 45.455 1.90 0.00 39.04 3.58
2535 4149 4.322049 GGAACGGAGGGAGTATCATATGTG 60.322 50.000 1.90 0.00 36.25 3.21
2536 4150 3.833070 GGAACGGAGGGAGTATCATATGT 59.167 47.826 1.90 0.00 36.25 2.29
2537 4151 3.832490 TGGAACGGAGGGAGTATCATATG 59.168 47.826 0.00 0.00 36.25 1.78
2538 4152 4.127918 TGGAACGGAGGGAGTATCATAT 57.872 45.455 0.00 0.00 36.25 1.78
2539 4153 3.605726 TGGAACGGAGGGAGTATCATA 57.394 47.619 0.00 0.00 36.25 2.15
2540 4154 2.471815 TGGAACGGAGGGAGTATCAT 57.528 50.000 0.00 0.00 36.25 2.45
2541 4155 2.241281 TTGGAACGGAGGGAGTATCA 57.759 50.000 0.00 0.00 36.25 2.15
2542 4156 3.622166 TTTTGGAACGGAGGGAGTATC 57.378 47.619 0.00 0.00 0.00 2.24
2543 4157 3.780850 AGATTTTGGAACGGAGGGAGTAT 59.219 43.478 0.00 0.00 0.00 2.12
2544 4158 3.178865 AGATTTTGGAACGGAGGGAGTA 58.821 45.455 0.00 0.00 0.00 2.59
2545 4159 1.985895 AGATTTTGGAACGGAGGGAGT 59.014 47.619 0.00 0.00 0.00 3.85
2546 4160 2.789409 AGATTTTGGAACGGAGGGAG 57.211 50.000 0.00 0.00 0.00 4.30
2547 4161 4.523083 CATTAGATTTTGGAACGGAGGGA 58.477 43.478 0.00 0.00 0.00 4.20
2548 4162 3.066760 GCATTAGATTTTGGAACGGAGGG 59.933 47.826 0.00 0.00 0.00 4.30
2549 4163 3.242739 CGCATTAGATTTTGGAACGGAGG 60.243 47.826 0.00 0.00 0.00 4.30
2550 4164 3.788797 GCGCATTAGATTTTGGAACGGAG 60.789 47.826 0.30 0.00 0.00 4.63
2551 4165 2.096819 GCGCATTAGATTTTGGAACGGA 59.903 45.455 0.30 0.00 0.00 4.69
2552 4166 2.159448 TGCGCATTAGATTTTGGAACGG 60.159 45.455 5.66 0.00 0.00 4.44
2553 4167 3.129852 TGCGCATTAGATTTTGGAACG 57.870 42.857 5.66 0.00 0.00 3.95
2554 4168 7.097342 CATTATGCGCATTAGATTTTGGAAC 57.903 36.000 30.42 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.