Multiple sequence alignment - TraesCS1B01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G271300 chr1B 100.000 2333 0 0 1 2333 476919436 476921768 0.000000e+00 4309
1 TraesCS1B01G271300 chr1B 96.134 569 19 2 1459 2026 479581569 479582135 0.000000e+00 926
2 TraesCS1B01G271300 chr1B 94.220 173 10 0 2161 2333 62026917 62026745 4.940000e-67 265
3 TraesCS1B01G271300 chr1D 91.782 1302 48 22 175 1459 355087330 355088589 0.000000e+00 1757
4 TraesCS1B01G271300 chr1A 87.715 1335 68 30 175 1459 454532833 454534121 0.000000e+00 1469
5 TraesCS1B01G271300 chr4A 96.842 570 17 1 1460 2028 211005394 211004825 0.000000e+00 952
6 TraesCS1B01G271300 chr2B 96.842 570 16 2 1459 2026 639477703 639477134 0.000000e+00 952
7 TraesCS1B01G271300 chr2B 96.673 571 17 2 1458 2026 294205564 294204994 0.000000e+00 948
8 TraesCS1B01G271300 chr2B 94.350 177 9 1 2158 2333 540421752 540421928 1.060000e-68 270
9 TraesCS1B01G271300 chr2B 92.614 176 12 1 1 175 623563428 623563603 3.850000e-63 252
10 TraesCS1B01G271300 chr6A 95.439 570 25 1 1458 2027 440018497 440017929 0.000000e+00 907
11 TraesCS1B01G271300 chr5B 93.617 564 36 0 1460 2023 519645615 519645052 0.000000e+00 843
12 TraesCS1B01G271300 chr5B 97.727 176 3 1 1 176 648161368 648161542 3.770000e-78 302
13 TraesCS1B01G271300 chr5B 94.318 176 8 2 2159 2333 656837156 656836982 3.820000e-68 268
14 TraesCS1B01G271300 chr7D 93.298 567 36 2 1460 2026 365298541 365297977 0.000000e+00 835
15 TraesCS1B01G271300 chr7B 92.553 564 42 0 1463 2026 260824817 260824254 0.000000e+00 809
16 TraesCS1B01G271300 chr7B 94.767 172 9 0 2162 2333 481114253 481114082 3.820000e-68 268
17 TraesCS1B01G271300 chr4B 92.091 569 41 4 1458 2026 167197260 167197824 0.000000e+00 798
18 TraesCS1B01G271300 chr4B 94.253 174 10 0 2160 2333 453470612 453470439 1.370000e-67 267
19 TraesCS1B01G271300 chr3A 95.954 173 7 0 2161 2333 747669433 747669261 4.910000e-72 281
20 TraesCS1B01G271300 chr5D 94.828 174 8 1 2161 2333 443511878 443511705 1.060000e-68 270
21 TraesCS1B01G271300 chr7A 93.407 182 11 1 2152 2333 86568257 86568437 3.820000e-68 268
22 TraesCS1B01G271300 chr3B 94.798 173 6 3 2162 2333 709730811 709730641 1.370000e-67 267
23 TraesCS1B01G271300 chr6D 85.876 177 24 1 1 176 105956119 105956295 1.100000e-43 187
24 TraesCS1B01G271300 chr2A 85.714 175 25 0 1 175 712518789 712518963 3.960000e-43 185
25 TraesCS1B01G271300 chr2D 85.143 175 26 0 1 175 509237289 509237463 1.840000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G271300 chr1B 476919436 476921768 2332 False 4309 4309 100.000 1 2333 1 chr1B.!!$F1 2332
1 TraesCS1B01G271300 chr1B 479581569 479582135 566 False 926 926 96.134 1459 2026 1 chr1B.!!$F2 567
2 TraesCS1B01G271300 chr1D 355087330 355088589 1259 False 1757 1757 91.782 175 1459 1 chr1D.!!$F1 1284
3 TraesCS1B01G271300 chr1A 454532833 454534121 1288 False 1469 1469 87.715 175 1459 1 chr1A.!!$F1 1284
4 TraesCS1B01G271300 chr4A 211004825 211005394 569 True 952 952 96.842 1460 2028 1 chr4A.!!$R1 568
5 TraesCS1B01G271300 chr2B 639477134 639477703 569 True 952 952 96.842 1459 2026 1 chr2B.!!$R2 567
6 TraesCS1B01G271300 chr2B 294204994 294205564 570 True 948 948 96.673 1458 2026 1 chr2B.!!$R1 568
7 TraesCS1B01G271300 chr6A 440017929 440018497 568 True 907 907 95.439 1458 2027 1 chr6A.!!$R1 569
8 TraesCS1B01G271300 chr5B 519645052 519645615 563 True 843 843 93.617 1460 2023 1 chr5B.!!$R1 563
9 TraesCS1B01G271300 chr7D 365297977 365298541 564 True 835 835 93.298 1460 2026 1 chr7D.!!$R1 566
10 TraesCS1B01G271300 chr7B 260824254 260824817 563 True 809 809 92.553 1463 2026 1 chr7B.!!$R1 563
11 TraesCS1B01G271300 chr4B 167197260 167197824 564 False 798 798 92.091 1458 2026 1 chr4B.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 770 0.031314 CTATGTGATCTGCGCCGTCT 59.969 55.0 4.18 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2252 0.02877 TTCTTCCTTTGCAACGCACG 59.971 50.0 0.0 0.0 38.71 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.516225 GTGGGTTAGGCGGGATGC 60.516 66.667 0.00 0.00 45.38 3.91
18 19 2.690881 TGGGTTAGGCGGGATGCT 60.691 61.111 0.00 0.00 45.43 3.79
19 20 1.383386 TGGGTTAGGCGGGATGCTA 60.383 57.895 0.00 0.00 45.43 3.49
20 21 0.983905 TGGGTTAGGCGGGATGCTAA 60.984 55.000 0.00 0.00 45.43 3.09
21 22 0.400594 GGGTTAGGCGGGATGCTAAT 59.599 55.000 0.00 0.00 45.43 1.73
22 23 1.626825 GGGTTAGGCGGGATGCTAATA 59.373 52.381 0.00 0.00 45.43 0.98
23 24 2.039348 GGGTTAGGCGGGATGCTAATAA 59.961 50.000 0.00 0.00 45.43 1.40
24 25 3.497227 GGGTTAGGCGGGATGCTAATAAA 60.497 47.826 0.00 0.00 45.43 1.40
25 26 3.751698 GGTTAGGCGGGATGCTAATAAAG 59.248 47.826 0.00 0.00 45.43 1.85
41 42 5.712152 AATAAAGCTGCCCACATATTAGC 57.288 39.130 0.00 0.00 34.71 3.09
42 43 3.303351 AAAGCTGCCCACATATTAGCT 57.697 42.857 0.00 0.00 45.87 3.32
43 44 4.437682 AAAGCTGCCCACATATTAGCTA 57.562 40.909 0.00 0.00 43.37 3.32
44 45 3.692257 AGCTGCCCACATATTAGCTAG 57.308 47.619 0.00 0.00 42.45 3.42
45 46 2.304180 AGCTGCCCACATATTAGCTAGG 59.696 50.000 0.00 0.00 42.45 3.02
46 47 2.616510 GCTGCCCACATATTAGCTAGGG 60.617 54.545 8.77 8.77 39.33 3.53
47 48 2.906389 CTGCCCACATATTAGCTAGGGA 59.094 50.000 15.86 2.77 38.60 4.20
48 49 3.322862 TGCCCACATATTAGCTAGGGAA 58.677 45.455 15.86 4.04 38.60 3.97
49 50 3.327757 TGCCCACATATTAGCTAGGGAAG 59.672 47.826 15.86 0.19 38.60 3.46
63 64 5.523438 CTAGGGAAGCAGTTTCTACTAGG 57.477 47.826 15.25 4.43 38.38 3.02
64 65 3.792515 AGGGAAGCAGTTTCTACTAGGT 58.207 45.455 0.00 0.00 36.03 3.08
65 66 4.168883 AGGGAAGCAGTTTCTACTAGGTT 58.831 43.478 0.00 0.00 36.03 3.50
66 67 5.339477 AGGGAAGCAGTTTCTACTAGGTTA 58.661 41.667 0.00 0.00 36.03 2.85
67 68 5.783875 AGGGAAGCAGTTTCTACTAGGTTAA 59.216 40.000 0.00 0.00 36.03 2.01
68 69 6.070710 AGGGAAGCAGTTTCTACTAGGTTAAG 60.071 42.308 0.00 0.00 36.03 1.85
69 70 5.581479 GGAAGCAGTTTCTACTAGGTTAAGC 59.419 44.000 0.00 0.00 36.03 3.09
70 71 5.740290 AGCAGTTTCTACTAGGTTAAGCA 57.260 39.130 7.52 0.00 31.96 3.91
71 72 6.110411 AGCAGTTTCTACTAGGTTAAGCAA 57.890 37.500 7.52 0.00 31.96 3.91
72 73 6.166982 AGCAGTTTCTACTAGGTTAAGCAAG 58.833 40.000 7.52 0.00 31.96 4.01
73 74 5.351740 GCAGTTTCTACTAGGTTAAGCAAGG 59.648 44.000 7.52 0.00 31.96 3.61
74 75 5.875359 CAGTTTCTACTAGGTTAAGCAAGGG 59.125 44.000 7.52 0.00 31.96 3.95
75 76 5.045797 AGTTTCTACTAGGTTAAGCAAGGGG 60.046 44.000 7.52 0.00 31.21 4.79
76 77 4.070681 TCTACTAGGTTAAGCAAGGGGT 57.929 45.455 7.52 1.16 0.00 4.95
77 78 3.773119 TCTACTAGGTTAAGCAAGGGGTG 59.227 47.826 7.52 0.00 0.00 4.61
78 79 1.633945 ACTAGGTTAAGCAAGGGGTGG 59.366 52.381 7.52 0.00 0.00 4.61
79 80 0.330267 TAGGTTAAGCAAGGGGTGGC 59.670 55.000 7.52 0.00 0.00 5.01
80 81 1.076727 GGTTAAGCAAGGGGTGGCT 59.923 57.895 0.00 0.00 43.46 4.75
81 82 1.250840 GGTTAAGCAAGGGGTGGCTG 61.251 60.000 0.00 0.00 40.93 4.85
82 83 1.606313 TTAAGCAAGGGGTGGCTGC 60.606 57.895 0.00 0.00 40.93 5.25
83 84 2.364722 TTAAGCAAGGGGTGGCTGCA 62.365 55.000 0.50 0.00 40.93 4.41
84 85 2.153898 TAAGCAAGGGGTGGCTGCAT 62.154 55.000 0.50 0.00 40.93 3.96
85 86 3.766691 GCAAGGGGTGGCTGCATG 61.767 66.667 0.50 0.00 36.09 4.06
86 87 2.283388 CAAGGGGTGGCTGCATGT 60.283 61.111 0.50 0.00 0.00 3.21
87 88 2.283388 AAGGGGTGGCTGCATGTG 60.283 61.111 0.50 0.00 0.00 3.21
95 96 4.746309 GCTGCATGTGCCCCCAGA 62.746 66.667 2.07 0.00 41.18 3.86
96 97 2.439701 CTGCATGTGCCCCCAGAG 60.440 66.667 2.07 0.00 41.18 3.35
97 98 3.259314 TGCATGTGCCCCCAGAGT 61.259 61.111 2.07 0.00 41.18 3.24
98 99 2.036256 GCATGTGCCCCCAGAGTT 59.964 61.111 0.00 0.00 34.31 3.01
99 100 1.607467 GCATGTGCCCCCAGAGTTT 60.607 57.895 0.00 0.00 34.31 2.66
100 101 0.323360 GCATGTGCCCCCAGAGTTTA 60.323 55.000 0.00 0.00 34.31 2.01
101 102 1.686115 GCATGTGCCCCCAGAGTTTAT 60.686 52.381 0.00 0.00 34.31 1.40
102 103 2.738743 CATGTGCCCCCAGAGTTTATT 58.261 47.619 0.00 0.00 0.00 1.40
103 104 2.507407 TGTGCCCCCAGAGTTTATTC 57.493 50.000 0.00 0.00 0.00 1.75
104 105 1.992557 TGTGCCCCCAGAGTTTATTCT 59.007 47.619 0.00 0.00 0.00 2.40
105 106 2.290896 TGTGCCCCCAGAGTTTATTCTG 60.291 50.000 0.00 0.00 43.35 3.02
106 107 1.340991 TGCCCCCAGAGTTTATTCTGC 60.341 52.381 0.00 0.00 42.58 4.26
107 108 1.340991 GCCCCCAGAGTTTATTCTGCA 60.341 52.381 0.00 0.00 42.58 4.41
108 109 2.648059 CCCCCAGAGTTTATTCTGCAG 58.352 52.381 7.63 7.63 42.58 4.41
109 110 2.239654 CCCCCAGAGTTTATTCTGCAGA 59.760 50.000 13.74 13.74 42.58 4.26
110 111 3.274288 CCCCAGAGTTTATTCTGCAGAC 58.726 50.000 18.03 4.98 42.58 3.51
111 112 3.307691 CCCCAGAGTTTATTCTGCAGACA 60.308 47.826 18.03 8.50 42.58 3.41
112 113 4.326826 CCCAGAGTTTATTCTGCAGACAA 58.673 43.478 18.03 10.93 42.58 3.18
113 114 4.946157 CCCAGAGTTTATTCTGCAGACAAT 59.054 41.667 18.03 11.18 42.58 2.71
114 115 5.065731 CCCAGAGTTTATTCTGCAGACAATC 59.934 44.000 18.03 12.25 42.58 2.67
115 116 5.220548 CCAGAGTTTATTCTGCAGACAATCG 60.221 44.000 18.03 6.37 42.58 3.34
116 117 4.331168 AGAGTTTATTCTGCAGACAATCGC 59.669 41.667 18.03 13.51 0.00 4.58
117 118 3.062639 AGTTTATTCTGCAGACAATCGCG 59.937 43.478 18.03 0.00 0.00 5.87
118 119 2.577449 TATTCTGCAGACAATCGCGA 57.423 45.000 18.03 13.09 0.00 5.87
119 120 1.725641 ATTCTGCAGACAATCGCGAA 58.274 45.000 18.03 0.00 0.00 4.70
120 121 0.790207 TTCTGCAGACAATCGCGAAC 59.210 50.000 18.03 5.33 0.00 3.95
121 122 1.057822 CTGCAGACAATCGCGAACG 59.942 57.895 15.24 10.08 42.01 3.95
132 133 1.925052 CGCGAACGAAATCCCTAGC 59.075 57.895 0.00 0.00 43.93 3.42
133 134 0.527817 CGCGAACGAAATCCCTAGCT 60.528 55.000 0.00 0.00 43.93 3.32
134 135 0.931005 GCGAACGAAATCCCTAGCTG 59.069 55.000 0.00 0.00 0.00 4.24
135 136 1.571919 CGAACGAAATCCCTAGCTGG 58.428 55.000 0.00 0.00 0.00 4.85
151 152 5.703130 CCTAGCTGGGATGACTAAATAAAGC 59.297 44.000 11.42 0.00 0.00 3.51
152 153 5.379706 AGCTGGGATGACTAAATAAAGCT 57.620 39.130 0.00 0.00 33.80 3.74
153 154 6.500589 AGCTGGGATGACTAAATAAAGCTA 57.499 37.500 0.00 0.00 36.75 3.32
154 155 7.084268 AGCTGGGATGACTAAATAAAGCTAT 57.916 36.000 0.00 0.00 36.75 2.97
155 156 6.939163 AGCTGGGATGACTAAATAAAGCTATG 59.061 38.462 0.00 0.00 36.75 2.23
156 157 6.348868 GCTGGGATGACTAAATAAAGCTATGC 60.349 42.308 0.00 0.00 0.00 3.14
157 158 6.600388 TGGGATGACTAAATAAAGCTATGCA 58.400 36.000 0.00 0.00 0.00 3.96
158 159 7.233632 TGGGATGACTAAATAAAGCTATGCAT 58.766 34.615 3.79 3.79 0.00 3.96
159 160 7.175467 TGGGATGACTAAATAAAGCTATGCATG 59.825 37.037 10.16 0.26 0.00 4.06
160 161 7.391554 GGGATGACTAAATAAAGCTATGCATGA 59.608 37.037 10.16 0.00 0.00 3.07
161 162 8.786898 GGATGACTAAATAAAGCTATGCATGAA 58.213 33.333 10.16 0.00 0.00 2.57
162 163 9.823098 GATGACTAAATAAAGCTATGCATGAAG 57.177 33.333 10.16 0.00 0.00 3.02
163 164 8.737168 TGACTAAATAAAGCTATGCATGAAGT 57.263 30.769 10.16 0.00 0.00 3.01
164 165 9.177608 TGACTAAATAAAGCTATGCATGAAGTT 57.822 29.630 10.16 0.00 0.00 2.66
173 174 9.762933 AAAGCTATGCATGAAGTTTAAGAAAAA 57.237 25.926 10.16 0.00 0.00 1.94
212 217 4.022068 TCAACCATGCCACATTCTTTCTTC 60.022 41.667 0.00 0.00 0.00 2.87
268 273 4.214545 CAGTTCGTTTTGTAATGGTAGGCA 59.785 41.667 0.00 0.00 0.00 4.75
290 295 4.037858 GCTAACCAGCCAATCAATCAAG 57.962 45.455 0.00 0.00 42.37 3.02
456 463 4.469945 TGCTATACCTAAGAAACCACAGCT 59.530 41.667 0.00 0.00 0.00 4.24
470 477 6.716898 AACCACAGCTATTAGAAAACGTAC 57.283 37.500 0.00 0.00 0.00 3.67
473 480 6.312918 ACCACAGCTATTAGAAAACGTACATG 59.687 38.462 0.00 0.00 0.00 3.21
474 481 6.533723 CCACAGCTATTAGAAAACGTACATGA 59.466 38.462 0.00 0.00 0.00 3.07
574 583 3.064408 GCGATGTGTTGATGTGATGTGAT 59.936 43.478 0.00 0.00 0.00 3.06
576 585 4.495184 CGATGTGTTGATGTGATGTGATGG 60.495 45.833 0.00 0.00 0.00 3.51
614 623 9.066892 GTGTATTAGGATAGGATTGAATTTGCA 57.933 33.333 0.00 0.00 0.00 4.08
634 643 3.119849 GCAATTAGCGTTGGTTGTGAGAT 60.120 43.478 2.55 0.00 0.00 2.75
719 738 1.144969 GACGGTCTTGATTGACGCAA 58.855 50.000 0.00 0.00 37.81 4.85
730 749 5.058149 TGATTGACGCAAAAATGCTATGT 57.942 34.783 0.00 0.00 0.00 2.29
731 750 6.188400 TGATTGACGCAAAAATGCTATGTA 57.812 33.333 0.00 0.00 0.00 2.29
732 751 6.027131 TGATTGACGCAAAAATGCTATGTAC 58.973 36.000 0.00 0.00 0.00 2.90
751 770 0.031314 CTATGTGATCTGCGCCGTCT 59.969 55.000 4.18 0.00 0.00 4.18
770 789 4.260661 CGTCTGCCTGAATTGATGATCTTG 60.261 45.833 0.00 0.00 0.00 3.02
772 791 4.880120 TCTGCCTGAATTGATGATCTTGTC 59.120 41.667 0.00 0.00 0.00 3.18
788 811 5.124036 TCTTGTCTTTCTTTCCCTCCAAA 57.876 39.130 0.00 0.00 0.00 3.28
958 1025 3.055719 CGCCCACACACACCCATC 61.056 66.667 0.00 0.00 0.00 3.51
959 1026 3.055719 GCCCACACACACCCATCG 61.056 66.667 0.00 0.00 0.00 3.84
960 1027 2.429930 CCCACACACACCCATCGT 59.570 61.111 0.00 0.00 0.00 3.73
978 1045 1.073319 TTCCTCACCAACCCCTCCA 60.073 57.895 0.00 0.00 0.00 3.86
983 1050 2.122547 ACCAACCCCTCCACTCGT 60.123 61.111 0.00 0.00 0.00 4.18
987 1054 0.531200 CAACCCCTCCACTCGTCTAC 59.469 60.000 0.00 0.00 0.00 2.59
1008 1075 1.227764 CCTCACGATCATGGGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
1392 1465 0.316772 CGTAGTCCGGTAGATGCGTG 60.317 60.000 0.00 0.00 0.00 5.34
1397 1470 0.459585 TCCGGTAGATGCGTGCTTTC 60.460 55.000 0.00 0.00 0.00 2.62
1413 1486 3.004629 TGCTTTCGATTCATGCTTTGTGT 59.995 39.130 0.00 0.00 0.00 3.72
1425 1498 1.831343 CTTTGTGTGTCAAGTGCAGC 58.169 50.000 0.00 0.00 37.35 5.25
1432 1505 2.364002 TGTGTCAAGTGCAGCAGTAGTA 59.636 45.455 2.23 0.00 0.00 1.82
1548 1621 9.354673 CAATGGGTACAAAATTCTATCCATACT 57.645 33.333 0.00 0.00 33.87 2.12
1555 1628 8.019656 ACAAAATTCTATCCATACTCGTACCT 57.980 34.615 0.00 0.00 0.00 3.08
1862 1938 5.049680 CACATGTCGGTATTAAATGGGTAGC 60.050 44.000 0.00 0.00 0.00 3.58
1976 2052 2.510411 CATACCCTGCCCATGCGA 59.490 61.111 0.00 0.00 41.78 5.10
2028 2104 4.709397 TGGGTAAAATTGCCATCCTTAGTG 59.291 41.667 2.69 0.00 34.27 2.74
2029 2105 4.441495 GGGTAAAATTGCCATCCTTAGTGC 60.441 45.833 2.69 0.00 34.27 4.40
2030 2106 4.159506 GGTAAAATTGCCATCCTTAGTGCA 59.840 41.667 0.00 0.00 32.69 4.57
2031 2107 5.163416 GGTAAAATTGCCATCCTTAGTGCAT 60.163 40.000 0.00 0.00 33.08 3.96
2032 2108 6.040391 GGTAAAATTGCCATCCTTAGTGCATA 59.960 38.462 0.00 0.00 33.08 3.14
2033 2109 5.520376 AAATTGCCATCCTTAGTGCATAC 57.480 39.130 0.00 0.00 33.08 2.39
2034 2110 2.238942 TGCCATCCTTAGTGCATACG 57.761 50.000 0.00 0.00 0.00 3.06
2035 2111 1.760029 TGCCATCCTTAGTGCATACGA 59.240 47.619 0.00 0.00 0.00 3.43
2036 2112 2.224042 TGCCATCCTTAGTGCATACGAG 60.224 50.000 0.00 0.00 0.00 4.18
2037 2113 2.224066 GCCATCCTTAGTGCATACGAGT 60.224 50.000 0.00 0.00 0.00 4.18
2038 2114 3.384668 CCATCCTTAGTGCATACGAGTG 58.615 50.000 0.00 0.00 0.00 3.51
2039 2115 3.068165 CCATCCTTAGTGCATACGAGTGA 59.932 47.826 0.00 0.00 0.00 3.41
2040 2116 4.262207 CCATCCTTAGTGCATACGAGTGAT 60.262 45.833 0.00 0.00 0.00 3.06
2041 2117 5.292765 CATCCTTAGTGCATACGAGTGATT 58.707 41.667 0.00 0.00 0.00 2.57
2042 2118 4.933330 TCCTTAGTGCATACGAGTGATTC 58.067 43.478 0.00 0.00 0.00 2.52
2043 2119 4.401202 TCCTTAGTGCATACGAGTGATTCA 59.599 41.667 0.00 0.00 0.00 2.57
2044 2120 4.742167 CCTTAGTGCATACGAGTGATTCAG 59.258 45.833 0.00 0.00 0.00 3.02
2045 2121 3.876274 AGTGCATACGAGTGATTCAGT 57.124 42.857 0.00 0.00 0.00 3.41
2046 2122 4.193826 AGTGCATACGAGTGATTCAGTT 57.806 40.909 0.00 0.00 0.00 3.16
2047 2123 4.177026 AGTGCATACGAGTGATTCAGTTC 58.823 43.478 0.00 0.00 0.00 3.01
2048 2124 4.081972 AGTGCATACGAGTGATTCAGTTCT 60.082 41.667 0.00 0.00 0.00 3.01
2049 2125 5.125578 AGTGCATACGAGTGATTCAGTTCTA 59.874 40.000 0.00 0.00 0.00 2.10
2050 2126 5.980116 GTGCATACGAGTGATTCAGTTCTAT 59.020 40.000 0.00 0.00 0.00 1.98
2051 2127 6.477033 GTGCATACGAGTGATTCAGTTCTATT 59.523 38.462 0.00 0.00 0.00 1.73
2052 2128 7.010552 GTGCATACGAGTGATTCAGTTCTATTT 59.989 37.037 0.00 0.00 0.00 1.40
2053 2129 7.222805 TGCATACGAGTGATTCAGTTCTATTTC 59.777 37.037 0.00 0.00 0.00 2.17
2054 2130 7.436673 GCATACGAGTGATTCAGTTCTATTTCT 59.563 37.037 0.00 0.00 0.00 2.52
2055 2131 9.952188 CATACGAGTGATTCAGTTCTATTTCTA 57.048 33.333 0.00 0.00 0.00 2.10
2056 2132 9.953697 ATACGAGTGATTCAGTTCTATTTCTAC 57.046 33.333 0.00 0.00 0.00 2.59
2057 2133 7.827701 ACGAGTGATTCAGTTCTATTTCTACA 58.172 34.615 0.00 0.00 0.00 2.74
2058 2134 8.470805 ACGAGTGATTCAGTTCTATTTCTACAT 58.529 33.333 0.00 0.00 0.00 2.29
2059 2135 8.750416 CGAGTGATTCAGTTCTATTTCTACATG 58.250 37.037 0.00 0.00 0.00 3.21
2060 2136 9.809096 GAGTGATTCAGTTCTATTTCTACATGA 57.191 33.333 0.00 0.00 0.00 3.07
2061 2137 9.593134 AGTGATTCAGTTCTATTTCTACATGAC 57.407 33.333 0.00 0.00 0.00 3.06
2062 2138 9.371136 GTGATTCAGTTCTATTTCTACATGACA 57.629 33.333 0.00 0.00 0.00 3.58
2063 2139 9.591792 TGATTCAGTTCTATTTCTACATGACAG 57.408 33.333 0.00 0.00 0.00 3.51
2064 2140 8.954950 ATTCAGTTCTATTTCTACATGACAGG 57.045 34.615 0.00 0.00 0.00 4.00
2065 2141 7.718334 TCAGTTCTATTTCTACATGACAGGA 57.282 36.000 0.00 0.00 0.00 3.86
2066 2142 7.776107 TCAGTTCTATTTCTACATGACAGGAG 58.224 38.462 0.00 0.00 0.00 3.69
2067 2143 7.397476 TCAGTTCTATTTCTACATGACAGGAGT 59.603 37.037 0.00 0.00 0.00 3.85
2068 2144 8.037758 CAGTTCTATTTCTACATGACAGGAGTT 58.962 37.037 0.00 0.00 0.00 3.01
2069 2145 8.037758 AGTTCTATTTCTACATGACAGGAGTTG 58.962 37.037 0.00 0.00 0.00 3.16
2070 2146 6.878317 TCTATTTCTACATGACAGGAGTTGG 58.122 40.000 0.00 0.00 0.00 3.77
2071 2147 5.762179 ATTTCTACATGACAGGAGTTGGA 57.238 39.130 0.00 0.00 0.00 3.53
2072 2148 4.808414 TTCTACATGACAGGAGTTGGAG 57.192 45.455 0.00 0.00 0.00 3.86
2073 2149 4.047627 TCTACATGACAGGAGTTGGAGA 57.952 45.455 0.00 0.00 0.00 3.71
2074 2150 4.614475 TCTACATGACAGGAGTTGGAGAT 58.386 43.478 0.00 0.00 0.00 2.75
2075 2151 5.026121 TCTACATGACAGGAGTTGGAGATT 58.974 41.667 0.00 0.00 0.00 2.40
2076 2152 3.947868 ACATGACAGGAGTTGGAGATTG 58.052 45.455 0.00 0.00 0.00 2.67
2077 2153 3.328931 ACATGACAGGAGTTGGAGATTGT 59.671 43.478 0.00 0.00 0.00 2.71
2078 2154 4.532126 ACATGACAGGAGTTGGAGATTGTA 59.468 41.667 0.00 0.00 0.00 2.41
2079 2155 5.013079 ACATGACAGGAGTTGGAGATTGTAA 59.987 40.000 0.00 0.00 0.00 2.41
2080 2156 5.560722 TGACAGGAGTTGGAGATTGTAAA 57.439 39.130 0.00 0.00 0.00 2.01
2081 2157 5.305585 TGACAGGAGTTGGAGATTGTAAAC 58.694 41.667 0.00 0.00 0.00 2.01
2082 2158 4.652822 ACAGGAGTTGGAGATTGTAAACC 58.347 43.478 0.00 0.00 0.00 3.27
2083 2159 4.104102 ACAGGAGTTGGAGATTGTAAACCA 59.896 41.667 0.00 0.00 0.00 3.67
2084 2160 5.070001 CAGGAGTTGGAGATTGTAAACCAA 58.930 41.667 0.00 0.00 39.60 3.67
2091 2167 7.681939 TTGGAGATTGTAAACCAACAGATAC 57.318 36.000 0.00 0.00 37.46 2.24
2092 2168 7.016153 TGGAGATTGTAAACCAACAGATACT 57.984 36.000 0.00 0.00 35.44 2.12
2093 2169 7.458397 TGGAGATTGTAAACCAACAGATACTT 58.542 34.615 0.00 0.00 35.44 2.24
2094 2170 7.606456 TGGAGATTGTAAACCAACAGATACTTC 59.394 37.037 0.00 0.00 35.44 3.01
2095 2171 7.824779 GGAGATTGTAAACCAACAGATACTTCT 59.175 37.037 0.00 0.00 35.44 2.85
2111 2187 9.533253 CAGATACTTCTGGTTTCAATTTTGTTT 57.467 29.630 0.00 0.00 44.78 2.83
2112 2188 9.750125 AGATACTTCTGGTTTCAATTTTGTTTC 57.250 29.630 0.00 0.00 0.00 2.78
2113 2189 9.528018 GATACTTCTGGTTTCAATTTTGTTTCA 57.472 29.630 0.00 0.00 0.00 2.69
2114 2190 7.595311 ACTTCTGGTTTCAATTTTGTTTCAC 57.405 32.000 0.00 0.00 0.00 3.18
2115 2191 7.158021 ACTTCTGGTTTCAATTTTGTTTCACA 58.842 30.769 0.00 0.00 0.00 3.58
2116 2192 7.659390 ACTTCTGGTTTCAATTTTGTTTCACAA 59.341 29.630 0.00 0.00 36.11 3.33
2117 2193 7.593875 TCTGGTTTCAATTTTGTTTCACAAG 57.406 32.000 0.00 0.00 39.53 3.16
2118 2194 7.158021 TCTGGTTTCAATTTTGTTTCACAAGT 58.842 30.769 0.00 0.00 39.53 3.16
2119 2195 7.330700 TCTGGTTTCAATTTTGTTTCACAAGTC 59.669 33.333 0.00 0.00 39.53 3.01
2120 2196 6.370166 TGGTTTCAATTTTGTTTCACAAGTCC 59.630 34.615 0.00 0.00 39.53 3.85
2121 2197 6.593770 GGTTTCAATTTTGTTTCACAAGTCCT 59.406 34.615 0.00 0.00 39.53 3.85
2122 2198 7.119116 GGTTTCAATTTTGTTTCACAAGTCCTT 59.881 33.333 0.00 0.00 39.53 3.36
2123 2199 7.593875 TTCAATTTTGTTTCACAAGTCCTTG 57.406 32.000 5.51 5.51 39.53 3.61
2145 2221 9.646427 CCTTGTGTTATTCTTAGAGATATAGCC 57.354 37.037 0.00 0.00 0.00 3.93
2147 2223 9.982651 TTGTGTTATTCTTAGAGATATAGCCAC 57.017 33.333 0.00 0.00 0.00 5.01
2148 2224 8.585881 TGTGTTATTCTTAGAGATATAGCCACC 58.414 37.037 0.00 0.00 0.00 4.61
2149 2225 8.585881 GTGTTATTCTTAGAGATATAGCCACCA 58.414 37.037 0.00 0.00 0.00 4.17
2150 2226 8.585881 TGTTATTCTTAGAGATATAGCCACCAC 58.414 37.037 0.00 0.00 0.00 4.16
2151 2227 8.808092 GTTATTCTTAGAGATATAGCCACCACT 58.192 37.037 0.00 0.00 0.00 4.00
2152 2228 7.863901 ATTCTTAGAGATATAGCCACCACTT 57.136 36.000 0.00 0.00 0.00 3.16
2153 2229 8.958060 ATTCTTAGAGATATAGCCACCACTTA 57.042 34.615 0.00 0.00 0.00 2.24
2154 2230 8.410673 TTCTTAGAGATATAGCCACCACTTAG 57.589 38.462 0.00 0.00 0.00 2.18
2155 2231 6.434652 TCTTAGAGATATAGCCACCACTTAGC 59.565 42.308 0.00 0.00 0.00 3.09
2156 2232 4.746466 AGAGATATAGCCACCACTTAGCT 58.254 43.478 0.00 0.00 40.66 3.32
2157 2233 5.151454 AGAGATATAGCCACCACTTAGCTT 58.849 41.667 0.00 0.00 38.06 3.74
2158 2234 5.011533 AGAGATATAGCCACCACTTAGCTTG 59.988 44.000 0.00 0.00 38.06 4.01
2159 2235 4.901849 AGATATAGCCACCACTTAGCTTGA 59.098 41.667 0.00 0.00 38.06 3.02
2160 2236 5.545723 AGATATAGCCACCACTTAGCTTGAT 59.454 40.000 0.00 0.00 38.06 2.57
2161 2237 6.726299 AGATATAGCCACCACTTAGCTTGATA 59.274 38.462 0.00 0.00 38.06 2.15
2162 2238 3.268023 AGCCACCACTTAGCTTGATAC 57.732 47.619 0.00 0.00 31.27 2.24
2163 2239 2.840651 AGCCACCACTTAGCTTGATACT 59.159 45.455 0.00 0.00 31.27 2.12
2164 2240 4.030913 AGCCACCACTTAGCTTGATACTA 58.969 43.478 0.00 0.00 31.27 1.82
2165 2241 4.100189 AGCCACCACTTAGCTTGATACTAG 59.900 45.833 0.00 0.00 31.27 2.57
2166 2242 4.372656 CCACCACTTAGCTTGATACTAGC 58.627 47.826 0.00 0.00 38.93 3.42
2167 2243 4.141937 CCACCACTTAGCTTGATACTAGCA 60.142 45.833 0.00 0.00 41.11 3.49
2168 2244 5.419542 CACCACTTAGCTTGATACTAGCAA 58.580 41.667 0.00 0.00 41.11 3.91
2169 2245 5.874810 CACCACTTAGCTTGATACTAGCAAA 59.125 40.000 0.00 0.00 41.11 3.68
2170 2246 6.540189 CACCACTTAGCTTGATACTAGCAAAT 59.460 38.462 0.00 0.00 41.11 2.32
2171 2247 7.710907 CACCACTTAGCTTGATACTAGCAAATA 59.289 37.037 0.00 0.00 41.11 1.40
2172 2248 8.432805 ACCACTTAGCTTGATACTAGCAAATAT 58.567 33.333 0.00 0.00 41.11 1.28
2173 2249 8.715998 CCACTTAGCTTGATACTAGCAAATATG 58.284 37.037 0.00 0.90 41.11 1.78
2184 2260 2.942545 CAAATATGCCCGTGCGTTG 58.057 52.632 0.00 0.00 41.78 4.10
2185 2261 1.138671 AAATATGCCCGTGCGTTGC 59.861 52.632 0.00 0.00 41.78 4.17
2186 2262 1.590610 AAATATGCCCGTGCGTTGCA 61.591 50.000 8.11 8.11 41.78 4.08
2187 2263 1.590610 AATATGCCCGTGCGTTGCAA 61.591 50.000 0.00 0.00 41.47 4.08
2188 2264 1.590610 ATATGCCCGTGCGTTGCAAA 61.591 50.000 0.00 0.00 41.47 3.68
2189 2265 2.193865 TATGCCCGTGCGTTGCAAAG 62.194 55.000 8.11 8.11 41.47 2.77
2190 2266 4.999939 GCCCGTGCGTTGCAAAGG 63.000 66.667 14.31 4.49 41.47 3.11
2191 2267 3.283684 CCCGTGCGTTGCAAAGGA 61.284 61.111 14.31 8.61 41.47 3.36
2192 2268 2.718731 CCGTGCGTTGCAAAGGAA 59.281 55.556 14.31 0.00 41.47 3.36
2193 2269 1.370414 CCGTGCGTTGCAAAGGAAG 60.370 57.895 14.31 13.06 41.47 3.46
2194 2270 1.646540 CGTGCGTTGCAAAGGAAGA 59.353 52.632 13.36 0.00 41.47 2.87
2195 2271 0.028770 CGTGCGTTGCAAAGGAAGAA 59.971 50.000 13.36 0.00 41.47 2.52
2196 2272 1.532921 CGTGCGTTGCAAAGGAAGAAA 60.533 47.619 13.36 0.00 41.47 2.52
2197 2273 2.535331 GTGCGTTGCAAAGGAAGAAAA 58.465 42.857 14.31 0.00 41.47 2.29
2198 2274 2.926838 GTGCGTTGCAAAGGAAGAAAAA 59.073 40.909 14.31 0.00 41.47 1.94
2199 2275 2.926838 TGCGTTGCAAAGGAAGAAAAAC 59.073 40.909 14.31 0.00 34.76 2.43
2200 2276 3.186909 GCGTTGCAAAGGAAGAAAAACT 58.813 40.909 14.31 0.00 32.44 2.66
2201 2277 4.142359 TGCGTTGCAAAGGAAGAAAAACTA 60.142 37.500 14.31 0.00 34.76 2.24
2202 2278 4.982295 GCGTTGCAAAGGAAGAAAAACTAT 59.018 37.500 14.31 0.00 32.44 2.12
2203 2279 5.462068 GCGTTGCAAAGGAAGAAAAACTATT 59.538 36.000 14.31 0.00 32.44 1.73
2204 2280 6.639279 GCGTTGCAAAGGAAGAAAAACTATTA 59.361 34.615 14.31 0.00 32.44 0.98
2205 2281 7.148967 GCGTTGCAAAGGAAGAAAAACTATTAG 60.149 37.037 14.31 0.00 32.44 1.73
2206 2282 8.073768 CGTTGCAAAGGAAGAAAAACTATTAGA 58.926 33.333 0.00 0.00 32.44 2.10
2207 2283 9.914131 GTTGCAAAGGAAGAAAAACTATTAGAT 57.086 29.630 0.00 0.00 0.00 1.98
2215 2291 9.651718 GGAAGAAAAACTATTAGATTATGCACG 57.348 33.333 0.00 0.00 0.00 5.34
2217 2293 9.988350 AAGAAAAACTATTAGATTATGCACGTG 57.012 29.630 12.28 12.28 0.00 4.49
2218 2294 8.122952 AGAAAAACTATTAGATTATGCACGTGC 58.877 33.333 33.11 33.11 42.50 5.34
2253 2329 4.718940 AAAATCCGAACCAAATGCTAGG 57.281 40.909 0.00 0.00 0.00 3.02
2254 2330 3.644966 AATCCGAACCAAATGCTAGGA 57.355 42.857 0.00 0.00 0.00 2.94
2255 2331 3.864789 ATCCGAACCAAATGCTAGGAT 57.135 42.857 0.00 0.00 32.70 3.24
2256 2332 2.917933 TCCGAACCAAATGCTAGGATG 58.082 47.619 0.00 0.00 0.00 3.51
2257 2333 2.503765 TCCGAACCAAATGCTAGGATGA 59.496 45.455 0.00 0.00 0.00 2.92
2258 2334 2.874701 CCGAACCAAATGCTAGGATGAG 59.125 50.000 0.00 0.00 0.00 2.90
2259 2335 3.432186 CCGAACCAAATGCTAGGATGAGA 60.432 47.826 0.00 0.00 0.00 3.27
2260 2336 4.384056 CGAACCAAATGCTAGGATGAGAT 58.616 43.478 0.00 0.00 0.00 2.75
2261 2337 5.511373 CCGAACCAAATGCTAGGATGAGATA 60.511 44.000 0.00 0.00 0.00 1.98
2262 2338 5.991606 CGAACCAAATGCTAGGATGAGATAA 59.008 40.000 0.00 0.00 0.00 1.75
2263 2339 6.146837 CGAACCAAATGCTAGGATGAGATAAG 59.853 42.308 0.00 0.00 0.00 1.73
2264 2340 5.874093 ACCAAATGCTAGGATGAGATAAGG 58.126 41.667 0.00 0.00 0.00 2.69
2265 2341 5.608437 ACCAAATGCTAGGATGAGATAAGGA 59.392 40.000 0.00 0.00 0.00 3.36
2266 2342 5.936956 CCAAATGCTAGGATGAGATAAGGAC 59.063 44.000 0.00 0.00 0.00 3.85
2267 2343 6.239829 CCAAATGCTAGGATGAGATAAGGACT 60.240 42.308 0.00 0.00 0.00 3.85
2268 2344 7.222872 CAAATGCTAGGATGAGATAAGGACTT 58.777 38.462 0.00 0.00 0.00 3.01
2269 2345 7.385894 AATGCTAGGATGAGATAAGGACTTT 57.614 36.000 0.00 0.00 0.00 2.66
2270 2346 6.814954 TGCTAGGATGAGATAAGGACTTTT 57.185 37.500 0.00 0.00 0.00 2.27
2271 2347 7.914427 TGCTAGGATGAGATAAGGACTTTTA 57.086 36.000 0.00 0.00 0.00 1.52
2272 2348 7.957002 TGCTAGGATGAGATAAGGACTTTTAG 58.043 38.462 0.00 0.00 0.00 1.85
2273 2349 7.785028 TGCTAGGATGAGATAAGGACTTTTAGA 59.215 37.037 0.00 0.00 0.00 2.10
2274 2350 8.643324 GCTAGGATGAGATAAGGACTTTTAGAA 58.357 37.037 0.00 0.00 0.00 2.10
2277 2353 8.997734 AGGATGAGATAAGGACTTTTAGAATGT 58.002 33.333 0.00 0.00 0.00 2.71
2300 2376 9.920946 ATGTAATTTCATAAAGTATGTCTGGGT 57.079 29.630 0.00 0.00 37.45 4.51
2301 2377 9.173021 TGTAATTTCATAAAGTATGTCTGGGTG 57.827 33.333 0.00 0.00 37.45 4.61
2302 2378 9.391006 GTAATTTCATAAAGTATGTCTGGGTGA 57.609 33.333 0.00 0.00 37.45 4.02
2304 2380 7.864108 TTTCATAAAGTATGTCTGGGTGATG 57.136 36.000 0.00 0.00 37.45 3.07
2305 2381 6.560003 TCATAAAGTATGTCTGGGTGATGT 57.440 37.500 0.00 0.00 37.45 3.06
2306 2382 6.582636 TCATAAAGTATGTCTGGGTGATGTC 58.417 40.000 0.00 0.00 37.45 3.06
2307 2383 4.908601 AAAGTATGTCTGGGTGATGTCA 57.091 40.909 0.00 0.00 0.00 3.58
2308 2384 5.441718 AAAGTATGTCTGGGTGATGTCAT 57.558 39.130 0.00 0.00 0.00 3.06
2309 2385 4.412796 AGTATGTCTGGGTGATGTCATG 57.587 45.455 0.00 0.00 0.00 3.07
2310 2386 4.033009 AGTATGTCTGGGTGATGTCATGA 58.967 43.478 0.00 0.00 0.00 3.07
2311 2387 2.768253 TGTCTGGGTGATGTCATGAC 57.232 50.000 19.27 19.27 0.00 3.06
2312 2388 1.066929 TGTCTGGGTGATGTCATGACG 60.067 52.381 20.54 4.21 0.00 4.35
2313 2389 1.204704 GTCTGGGTGATGTCATGACGA 59.795 52.381 20.54 10.47 0.00 4.20
2314 2390 1.478105 TCTGGGTGATGTCATGACGAG 59.522 52.381 20.54 7.74 0.00 4.18
2315 2391 1.478105 CTGGGTGATGTCATGACGAGA 59.522 52.381 20.54 4.03 0.00 4.04
2316 2392 2.102084 CTGGGTGATGTCATGACGAGAT 59.898 50.000 20.54 9.02 0.00 2.75
2317 2393 3.295973 TGGGTGATGTCATGACGAGATA 58.704 45.455 20.54 3.25 0.00 1.98
2318 2394 3.704061 TGGGTGATGTCATGACGAGATAA 59.296 43.478 20.54 2.48 0.00 1.75
2319 2395 4.202151 TGGGTGATGTCATGACGAGATAAG 60.202 45.833 20.54 0.00 0.00 1.73
2320 2396 4.302455 GGTGATGTCATGACGAGATAAGG 58.698 47.826 20.54 0.00 0.00 2.69
2321 2397 4.302455 GTGATGTCATGACGAGATAAGGG 58.698 47.826 20.54 0.00 0.00 3.95
2322 2398 4.038042 GTGATGTCATGACGAGATAAGGGA 59.962 45.833 20.54 0.00 0.00 4.20
2323 2399 4.038042 TGATGTCATGACGAGATAAGGGAC 59.962 45.833 20.54 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.692173 TAGCATCCCGCCTAACCCAC 61.692 60.000 0.00 0.00 44.04 4.61
1 2 0.983905 TTAGCATCCCGCCTAACCCA 60.984 55.000 0.00 0.00 44.04 4.51
2 3 0.400594 ATTAGCATCCCGCCTAACCC 59.599 55.000 0.00 0.00 44.04 4.11
3 4 3.412237 TTATTAGCATCCCGCCTAACC 57.588 47.619 0.00 0.00 44.04 2.85
17 18 6.656693 AGCTAATATGTGGGCAGCTTTATTAG 59.343 38.462 0.00 4.66 39.49 1.73
18 19 6.542821 AGCTAATATGTGGGCAGCTTTATTA 58.457 36.000 0.00 0.00 39.49 0.98
19 20 5.388654 AGCTAATATGTGGGCAGCTTTATT 58.611 37.500 0.00 0.00 39.49 1.40
20 21 4.990526 AGCTAATATGTGGGCAGCTTTAT 58.009 39.130 0.00 0.00 39.49 1.40
21 22 4.437682 AGCTAATATGTGGGCAGCTTTA 57.562 40.909 0.00 0.00 39.49 1.85
22 23 3.303351 AGCTAATATGTGGGCAGCTTT 57.697 42.857 0.00 0.00 39.49 3.51
23 24 3.244700 CCTAGCTAATATGTGGGCAGCTT 60.245 47.826 0.00 0.00 42.37 3.74
24 25 2.304180 CCTAGCTAATATGTGGGCAGCT 59.696 50.000 0.00 0.00 44.43 4.24
25 26 2.616510 CCCTAGCTAATATGTGGGCAGC 60.617 54.545 0.82 0.00 0.00 5.25
26 27 2.906389 TCCCTAGCTAATATGTGGGCAG 59.094 50.000 8.34 0.00 34.89 4.85
27 28 2.984672 TCCCTAGCTAATATGTGGGCA 58.015 47.619 8.34 0.00 34.89 5.36
28 29 3.870299 GCTTCCCTAGCTAATATGTGGGC 60.870 52.174 8.34 0.00 46.77 5.36
29 30 3.944087 GCTTCCCTAGCTAATATGTGGG 58.056 50.000 7.09 7.09 46.77 4.61
41 42 4.957327 ACCTAGTAGAAACTGCTTCCCTAG 59.043 45.833 0.00 7.58 36.62 3.02
42 43 4.944177 ACCTAGTAGAAACTGCTTCCCTA 58.056 43.478 0.00 0.00 36.36 3.53
43 44 3.792515 ACCTAGTAGAAACTGCTTCCCT 58.207 45.455 0.00 0.00 36.36 4.20
44 45 4.554960 AACCTAGTAGAAACTGCTTCCC 57.445 45.455 0.00 0.00 36.36 3.97
45 46 5.581479 GCTTAACCTAGTAGAAACTGCTTCC 59.419 44.000 0.00 0.00 36.36 3.46
46 47 6.164176 TGCTTAACCTAGTAGAAACTGCTTC 58.836 40.000 0.00 0.00 36.36 3.86
47 48 6.110411 TGCTTAACCTAGTAGAAACTGCTT 57.890 37.500 0.00 0.00 36.36 3.91
48 49 5.740290 TGCTTAACCTAGTAGAAACTGCT 57.260 39.130 0.00 0.00 36.36 4.24
49 50 5.351740 CCTTGCTTAACCTAGTAGAAACTGC 59.648 44.000 0.00 0.00 36.36 4.40
50 51 5.875359 CCCTTGCTTAACCTAGTAGAAACTG 59.125 44.000 0.00 0.00 36.36 3.16
51 52 5.045797 CCCCTTGCTTAACCTAGTAGAAACT 60.046 44.000 0.00 0.00 39.91 2.66
52 53 5.183969 CCCCTTGCTTAACCTAGTAGAAAC 58.816 45.833 0.00 0.00 0.00 2.78
53 54 4.848086 ACCCCTTGCTTAACCTAGTAGAAA 59.152 41.667 0.00 0.00 0.00 2.52
54 55 4.224370 CACCCCTTGCTTAACCTAGTAGAA 59.776 45.833 0.00 0.00 0.00 2.10
55 56 3.773119 CACCCCTTGCTTAACCTAGTAGA 59.227 47.826 0.00 0.00 0.00 2.59
56 57 3.118371 CCACCCCTTGCTTAACCTAGTAG 60.118 52.174 0.00 0.00 0.00 2.57
57 58 2.841881 CCACCCCTTGCTTAACCTAGTA 59.158 50.000 0.00 0.00 0.00 1.82
58 59 1.633945 CCACCCCTTGCTTAACCTAGT 59.366 52.381 0.00 0.00 0.00 2.57
59 60 1.682087 GCCACCCCTTGCTTAACCTAG 60.682 57.143 0.00 0.00 0.00 3.02
60 61 0.330267 GCCACCCCTTGCTTAACCTA 59.670 55.000 0.00 0.00 0.00 3.08
61 62 1.076727 GCCACCCCTTGCTTAACCT 59.923 57.895 0.00 0.00 0.00 3.50
62 63 1.076727 AGCCACCCCTTGCTTAACC 59.923 57.895 0.00 0.00 32.94 2.85
63 64 1.877576 GCAGCCACCCCTTGCTTAAC 61.878 60.000 0.00 0.00 35.12 2.01
64 65 1.606313 GCAGCCACCCCTTGCTTAA 60.606 57.895 0.00 0.00 35.12 1.85
65 66 2.035626 GCAGCCACCCCTTGCTTA 59.964 61.111 0.00 0.00 35.12 3.09
66 67 3.534704 ATGCAGCCACCCCTTGCTT 62.535 57.895 0.00 0.00 38.60 3.91
67 68 3.988678 ATGCAGCCACCCCTTGCT 61.989 61.111 0.00 0.00 38.60 3.91
68 69 3.766691 CATGCAGCCACCCCTTGC 61.767 66.667 0.00 0.00 38.30 4.01
69 70 2.283388 ACATGCAGCCACCCCTTG 60.283 61.111 0.00 0.00 0.00 3.61
70 71 2.283388 CACATGCAGCCACCCCTT 60.283 61.111 0.00 0.00 0.00 3.95
78 79 4.746309 TCTGGGGGCACATGCAGC 62.746 66.667 6.15 2.28 44.36 5.25
79 80 2.439701 CTCTGGGGGCACATGCAG 60.440 66.667 6.15 0.00 44.36 4.41
80 81 2.370459 AAACTCTGGGGGCACATGCA 62.370 55.000 6.15 0.00 44.36 3.96
81 82 0.323360 TAAACTCTGGGGGCACATGC 60.323 55.000 0.00 0.00 41.14 4.06
82 83 2.442236 ATAAACTCTGGGGGCACATG 57.558 50.000 0.00 0.00 0.00 3.21
83 84 2.582636 AGAATAAACTCTGGGGGCACAT 59.417 45.455 0.00 0.00 0.00 3.21
84 85 1.992557 AGAATAAACTCTGGGGGCACA 59.007 47.619 0.00 0.00 0.00 4.57
85 86 2.369394 CAGAATAAACTCTGGGGGCAC 58.631 52.381 0.00 0.00 39.39 5.01
86 87 1.340991 GCAGAATAAACTCTGGGGGCA 60.341 52.381 3.00 0.00 42.68 5.36
87 88 1.340991 TGCAGAATAAACTCTGGGGGC 60.341 52.381 3.00 0.00 42.68 5.80
88 89 2.239654 TCTGCAGAATAAACTCTGGGGG 59.760 50.000 15.67 0.00 42.68 5.40
89 90 3.274288 GTCTGCAGAATAAACTCTGGGG 58.726 50.000 20.19 0.00 42.68 4.96
90 91 3.942829 TGTCTGCAGAATAAACTCTGGG 58.057 45.455 20.19 0.00 42.68 4.45
91 92 5.220548 CGATTGTCTGCAGAATAAACTCTGG 60.221 44.000 20.19 0.10 42.68 3.86
92 93 5.726138 GCGATTGTCTGCAGAATAAACTCTG 60.726 44.000 20.19 9.46 44.82 3.35
93 94 4.331168 GCGATTGTCTGCAGAATAAACTCT 59.669 41.667 20.19 1.86 0.00 3.24
94 95 4.582459 GCGATTGTCTGCAGAATAAACTC 58.418 43.478 20.19 10.93 0.00 3.01
95 96 3.062639 CGCGATTGTCTGCAGAATAAACT 59.937 43.478 20.19 2.96 0.00 2.66
96 97 3.062099 TCGCGATTGTCTGCAGAATAAAC 59.938 43.478 20.19 13.99 0.00 2.01
97 98 3.258228 TCGCGATTGTCTGCAGAATAAA 58.742 40.909 20.19 13.73 0.00 1.40
98 99 2.887337 TCGCGATTGTCTGCAGAATAA 58.113 42.857 20.19 16.92 0.00 1.40
99 100 2.577449 TCGCGATTGTCTGCAGAATA 57.423 45.000 20.19 9.87 0.00 1.75
100 101 1.394917 GTTCGCGATTGTCTGCAGAAT 59.605 47.619 20.19 9.60 0.00 2.40
101 102 0.790207 GTTCGCGATTGTCTGCAGAA 59.210 50.000 20.19 3.81 0.00 3.02
102 103 1.344226 CGTTCGCGATTGTCTGCAGA 61.344 55.000 13.74 13.74 44.71 4.26
103 104 1.057822 CGTTCGCGATTGTCTGCAG 59.942 57.895 10.88 7.63 44.71 4.41
104 105 1.372375 TCGTTCGCGATTGTCTGCA 60.372 52.632 10.88 0.00 45.62 4.41
105 106 3.459027 TCGTTCGCGATTGTCTGC 58.541 55.556 10.88 0.00 45.62 4.26
114 115 0.527817 AGCTAGGGATTTCGTTCGCG 60.528 55.000 0.00 0.00 42.98 5.87
115 116 0.931005 CAGCTAGGGATTTCGTTCGC 59.069 55.000 0.00 0.00 0.00 4.70
116 117 1.571919 CCAGCTAGGGATTTCGTTCG 58.428 55.000 0.00 0.00 0.00 3.95
127 128 5.703130 GCTTTATTTAGTCATCCCAGCTAGG 59.297 44.000 0.00 0.00 37.03 3.02
128 129 6.529220 AGCTTTATTTAGTCATCCCAGCTAG 58.471 40.000 0.00 0.00 33.33 3.42
129 130 6.500589 AGCTTTATTTAGTCATCCCAGCTA 57.499 37.500 0.00 0.00 33.33 3.32
130 131 5.379706 AGCTTTATTTAGTCATCCCAGCT 57.620 39.130 0.00 0.00 0.00 4.24
131 132 6.348868 GCATAGCTTTATTTAGTCATCCCAGC 60.349 42.308 0.00 0.00 0.00 4.85
132 133 6.712095 TGCATAGCTTTATTTAGTCATCCCAG 59.288 38.462 0.00 0.00 0.00 4.45
133 134 6.600388 TGCATAGCTTTATTTAGTCATCCCA 58.400 36.000 0.00 0.00 0.00 4.37
134 135 7.391554 TCATGCATAGCTTTATTTAGTCATCCC 59.608 37.037 0.00 0.00 0.00 3.85
135 136 8.327941 TCATGCATAGCTTTATTTAGTCATCC 57.672 34.615 0.00 0.00 0.00 3.51
136 137 9.823098 CTTCATGCATAGCTTTATTTAGTCATC 57.177 33.333 0.00 0.00 0.00 2.92
137 138 9.347240 ACTTCATGCATAGCTTTATTTAGTCAT 57.653 29.630 0.00 0.00 0.00 3.06
138 139 8.737168 ACTTCATGCATAGCTTTATTTAGTCA 57.263 30.769 0.00 0.00 0.00 3.41
147 148 9.762933 TTTTTCTTAAACTTCATGCATAGCTTT 57.237 25.926 0.00 1.28 0.00 3.51
170 171 5.221441 GGTTGAAGGGTTACAGATGCTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
171 172 4.280929 GGTTGAAGGGTTACAGATGCTTTT 59.719 41.667 0.00 0.00 0.00 2.27
172 173 3.826729 GGTTGAAGGGTTACAGATGCTTT 59.173 43.478 0.00 0.00 0.00 3.51
173 174 3.181434 TGGTTGAAGGGTTACAGATGCTT 60.181 43.478 0.00 0.00 0.00 3.91
448 455 5.786311 TGTACGTTTTCTAATAGCTGTGGT 58.214 37.500 0.00 0.00 0.00 4.16
456 463 7.851387 TTGGCATCATGTACGTTTTCTAATA 57.149 32.000 0.00 0.00 0.00 0.98
470 477 2.281140 TGTTGCGATTTGGCATCATG 57.719 45.000 0.00 0.00 43.52 3.07
473 480 2.565210 TGATGTTGCGATTTGGCATC 57.435 45.000 0.00 0.00 43.52 3.91
474 481 2.542205 CGATGATGTTGCGATTTGGCAT 60.542 45.455 0.00 0.00 43.52 4.40
574 583 2.979814 ATACACAGCGTTATCTGCCA 57.020 45.000 0.00 0.00 37.59 4.92
576 585 4.617959 TCCTAATACACAGCGTTATCTGC 58.382 43.478 0.00 0.00 37.59 4.26
614 623 3.440173 CCATCTCACAACCAACGCTAATT 59.560 43.478 0.00 0.00 0.00 1.40
634 643 1.222766 AAAATACGCACGTGTCGCCA 61.223 50.000 25.05 16.70 0.00 5.69
683 702 4.819769 ACCGTCAATTGCATGCTATTTTT 58.180 34.783 22.24 2.81 0.00 1.94
684 703 4.158394 AGACCGTCAATTGCATGCTATTTT 59.842 37.500 22.24 3.53 0.00 1.82
698 717 1.144969 GCGTCAATCAAGACCGTCAA 58.855 50.000 0.40 0.00 35.07 3.18
719 738 7.095481 CGCAGATCACATAGTACATAGCATTTT 60.095 37.037 0.00 0.00 0.00 1.82
730 749 1.001706 GACGGCGCAGATCACATAGTA 60.002 52.381 16.26 0.00 0.00 1.82
731 750 0.249073 GACGGCGCAGATCACATAGT 60.249 55.000 16.26 0.00 0.00 2.12
732 751 0.031314 AGACGGCGCAGATCACATAG 59.969 55.000 16.26 0.00 0.00 2.23
751 770 4.851843 AGACAAGATCATCAATTCAGGCA 58.148 39.130 0.00 0.00 0.00 4.75
770 789 3.056536 GCCATTTGGAGGGAAAGAAAGAC 60.057 47.826 0.00 0.00 37.39 3.01
772 791 2.094545 CGCCATTTGGAGGGAAAGAAAG 60.095 50.000 0.00 0.00 37.39 2.62
806 829 5.066505 GGATTGAAATGGTAAGCAGTAGTGG 59.933 44.000 0.00 0.00 0.00 4.00
807 830 5.220662 CGGATTGAAATGGTAAGCAGTAGTG 60.221 44.000 0.00 0.00 0.00 2.74
958 1025 1.003718 GAGGGGTTGGTGAGGAACG 60.004 63.158 0.00 0.00 0.00 3.95
959 1026 1.379146 GGAGGGGTTGGTGAGGAAC 59.621 63.158 0.00 0.00 0.00 3.62
960 1027 1.073319 TGGAGGGGTTGGTGAGGAA 60.073 57.895 0.00 0.00 0.00 3.36
978 1045 0.035881 TCGTGAGGTGGTAGACGAGT 59.964 55.000 0.00 0.00 35.99 4.18
983 1050 2.031870 CCATGATCGTGAGGTGGTAGA 58.968 52.381 16.77 0.00 0.00 2.59
987 1054 1.524621 GCCCATGATCGTGAGGTGG 60.525 63.158 16.77 9.73 0.00 4.61
1008 1075 3.607370 GAGGCCTTCCACCCGTGAC 62.607 68.421 6.77 0.00 33.74 3.67
1392 1465 3.362831 CACACAAAGCATGAATCGAAAGC 59.637 43.478 0.00 0.00 0.00 3.51
1397 1470 3.541071 TGACACACAAAGCATGAATCG 57.459 42.857 0.00 0.00 0.00 3.34
1413 1486 2.364002 TGTACTACTGCTGCACTTGACA 59.636 45.455 0.00 0.00 0.00 3.58
1425 1498 6.038271 AGCTTCAACCAAAACTTGTACTACTG 59.962 38.462 0.00 0.00 0.00 2.74
1432 1505 3.848726 CACAGCTTCAACCAAAACTTGT 58.151 40.909 0.00 0.00 0.00 3.16
1692 1767 9.391006 TCGGCTATTTGTTATTTAGTTGAGATT 57.609 29.630 0.00 0.00 0.00 2.40
1781 1856 7.280356 ACCTATGTTAAAGTTCTGTTGTGAGT 58.720 34.615 0.00 0.00 0.00 3.41
1862 1938 5.943349 TTACCCATGGATATACCCATACG 57.057 43.478 15.22 0.00 44.69 3.06
2028 2104 7.436673 AGAAATAGAACTGAATCACTCGTATGC 59.563 37.037 0.00 0.00 0.00 3.14
2029 2105 8.864069 AGAAATAGAACTGAATCACTCGTATG 57.136 34.615 0.00 0.00 0.00 2.39
2030 2106 9.953697 GTAGAAATAGAACTGAATCACTCGTAT 57.046 33.333 0.00 0.00 0.00 3.06
2031 2107 8.953313 TGTAGAAATAGAACTGAATCACTCGTA 58.047 33.333 0.00 0.00 0.00 3.43
2032 2108 7.827701 TGTAGAAATAGAACTGAATCACTCGT 58.172 34.615 0.00 0.00 0.00 4.18
2033 2109 8.750416 CATGTAGAAATAGAACTGAATCACTCG 58.250 37.037 0.00 0.00 0.00 4.18
2034 2110 9.809096 TCATGTAGAAATAGAACTGAATCACTC 57.191 33.333 0.00 0.00 0.00 3.51
2035 2111 9.593134 GTCATGTAGAAATAGAACTGAATCACT 57.407 33.333 0.00 0.00 0.00 3.41
2036 2112 9.371136 TGTCATGTAGAAATAGAACTGAATCAC 57.629 33.333 0.00 0.00 0.00 3.06
2037 2113 9.591792 CTGTCATGTAGAAATAGAACTGAATCA 57.408 33.333 0.00 0.00 0.00 2.57
2038 2114 9.039870 CCTGTCATGTAGAAATAGAACTGAATC 57.960 37.037 0.00 0.00 0.00 2.52
2039 2115 8.762645 TCCTGTCATGTAGAAATAGAACTGAAT 58.237 33.333 0.00 0.00 0.00 2.57
2040 2116 8.134202 TCCTGTCATGTAGAAATAGAACTGAA 57.866 34.615 0.00 0.00 0.00 3.02
2041 2117 7.397476 ACTCCTGTCATGTAGAAATAGAACTGA 59.603 37.037 0.00 0.00 0.00 3.41
2042 2118 7.551585 ACTCCTGTCATGTAGAAATAGAACTG 58.448 38.462 0.00 0.00 0.00 3.16
2043 2119 7.726033 ACTCCTGTCATGTAGAAATAGAACT 57.274 36.000 0.00 0.00 0.00 3.01
2044 2120 7.278868 CCAACTCCTGTCATGTAGAAATAGAAC 59.721 40.741 0.00 0.00 0.00 3.01
2045 2121 7.180229 TCCAACTCCTGTCATGTAGAAATAGAA 59.820 37.037 0.00 0.00 0.00 2.10
2046 2122 6.667848 TCCAACTCCTGTCATGTAGAAATAGA 59.332 38.462 0.00 0.00 0.00 1.98
2047 2123 6.878317 TCCAACTCCTGTCATGTAGAAATAG 58.122 40.000 0.00 0.00 0.00 1.73
2048 2124 6.667848 TCTCCAACTCCTGTCATGTAGAAATA 59.332 38.462 0.00 0.00 0.00 1.40
2049 2125 5.485353 TCTCCAACTCCTGTCATGTAGAAAT 59.515 40.000 0.00 0.00 0.00 2.17
2050 2126 4.838423 TCTCCAACTCCTGTCATGTAGAAA 59.162 41.667 0.00 0.00 0.00 2.52
2051 2127 4.416516 TCTCCAACTCCTGTCATGTAGAA 58.583 43.478 0.00 0.00 0.00 2.10
2052 2128 4.047627 TCTCCAACTCCTGTCATGTAGA 57.952 45.455 0.00 0.00 0.00 2.59
2053 2129 5.114780 CAATCTCCAACTCCTGTCATGTAG 58.885 45.833 0.00 0.00 0.00 2.74
2054 2130 4.532126 ACAATCTCCAACTCCTGTCATGTA 59.468 41.667 0.00 0.00 0.00 2.29
2055 2131 3.328931 ACAATCTCCAACTCCTGTCATGT 59.671 43.478 0.00 0.00 0.00 3.21
2056 2132 3.947868 ACAATCTCCAACTCCTGTCATG 58.052 45.455 0.00 0.00 0.00 3.07
2057 2133 5.762179 TTACAATCTCCAACTCCTGTCAT 57.238 39.130 0.00 0.00 0.00 3.06
2058 2134 5.305585 GTTTACAATCTCCAACTCCTGTCA 58.694 41.667 0.00 0.00 0.00 3.58
2059 2135 4.695928 GGTTTACAATCTCCAACTCCTGTC 59.304 45.833 0.00 0.00 0.00 3.51
2060 2136 4.104102 TGGTTTACAATCTCCAACTCCTGT 59.896 41.667 0.00 0.00 0.00 4.00
2061 2137 4.651778 TGGTTTACAATCTCCAACTCCTG 58.348 43.478 0.00 0.00 0.00 3.86
2062 2138 4.993705 TGGTTTACAATCTCCAACTCCT 57.006 40.909 0.00 0.00 0.00 3.69
2067 2143 7.458397 AGTATCTGTTGGTTTACAATCTCCAA 58.542 34.615 0.00 0.00 41.95 3.53
2068 2144 7.016153 AGTATCTGTTGGTTTACAATCTCCA 57.984 36.000 0.00 0.00 41.95 3.86
2069 2145 7.824779 AGAAGTATCTGTTGGTTTACAATCTCC 59.175 37.037 0.00 0.00 41.95 3.71
2070 2146 8.660373 CAGAAGTATCTGTTGGTTTACAATCTC 58.340 37.037 0.00 0.00 46.60 2.75
2071 2147 8.553459 CAGAAGTATCTGTTGGTTTACAATCT 57.447 34.615 0.00 0.00 46.60 2.40
2086 2162 9.750125 GAAACAAAATTGAAACCAGAAGTATCT 57.250 29.630 0.00 0.00 35.88 1.98
2087 2163 9.528018 TGAAACAAAATTGAAACCAGAAGTATC 57.472 29.630 0.00 0.00 0.00 2.24
2088 2164 9.313118 GTGAAACAAAATTGAAACCAGAAGTAT 57.687 29.630 0.00 0.00 36.32 2.12
2089 2165 8.696410 GTGAAACAAAATTGAAACCAGAAGTA 57.304 30.769 0.00 0.00 36.32 2.24
2090 2166 7.595311 GTGAAACAAAATTGAAACCAGAAGT 57.405 32.000 0.00 0.00 36.32 3.01
2119 2195 9.646427 GGCTATATCTCTAAGAATAACACAAGG 57.354 37.037 0.00 0.00 0.00 3.61
2121 2197 9.982651 GTGGCTATATCTCTAAGAATAACACAA 57.017 33.333 0.00 0.00 0.00 3.33
2122 2198 8.585881 GGTGGCTATATCTCTAAGAATAACACA 58.414 37.037 0.00 0.00 0.00 3.72
2123 2199 8.585881 TGGTGGCTATATCTCTAAGAATAACAC 58.414 37.037 0.00 0.00 0.00 3.32
2124 2200 8.585881 GTGGTGGCTATATCTCTAAGAATAACA 58.414 37.037 0.00 0.00 0.00 2.41
2125 2201 8.808092 AGTGGTGGCTATATCTCTAAGAATAAC 58.192 37.037 0.00 0.00 0.00 1.89
2126 2202 8.958060 AGTGGTGGCTATATCTCTAAGAATAA 57.042 34.615 0.00 0.00 0.00 1.40
2127 2203 8.958060 AAGTGGTGGCTATATCTCTAAGAATA 57.042 34.615 0.00 0.00 0.00 1.75
2128 2204 7.863901 AAGTGGTGGCTATATCTCTAAGAAT 57.136 36.000 0.00 0.00 0.00 2.40
2129 2205 7.039644 GCTAAGTGGTGGCTATATCTCTAAGAA 60.040 40.741 0.00 0.00 0.00 2.52
2130 2206 6.434652 GCTAAGTGGTGGCTATATCTCTAAGA 59.565 42.308 0.00 0.00 0.00 2.10
2131 2207 6.435904 AGCTAAGTGGTGGCTATATCTCTAAG 59.564 42.308 0.00 0.00 34.31 2.18
2132 2208 6.315714 AGCTAAGTGGTGGCTATATCTCTAA 58.684 40.000 0.00 0.00 34.31 2.10
2133 2209 5.893500 AGCTAAGTGGTGGCTATATCTCTA 58.106 41.667 0.00 0.00 34.31 2.43
2134 2210 4.746466 AGCTAAGTGGTGGCTATATCTCT 58.254 43.478 0.00 0.00 34.31 3.10
2135 2211 5.011125 TCAAGCTAAGTGGTGGCTATATCTC 59.989 44.000 0.00 0.00 35.06 2.75
2136 2212 4.901849 TCAAGCTAAGTGGTGGCTATATCT 59.098 41.667 0.00 0.00 35.06 1.98
2137 2213 5.215252 TCAAGCTAAGTGGTGGCTATATC 57.785 43.478 0.00 0.00 35.06 1.63
2138 2214 5.832539 ATCAAGCTAAGTGGTGGCTATAT 57.167 39.130 0.00 0.00 35.06 0.86
2139 2215 5.839063 AGTATCAAGCTAAGTGGTGGCTATA 59.161 40.000 0.00 0.00 35.06 1.31
2140 2216 4.656112 AGTATCAAGCTAAGTGGTGGCTAT 59.344 41.667 0.00 0.00 35.06 2.97
2141 2217 4.030913 AGTATCAAGCTAAGTGGTGGCTA 58.969 43.478 0.00 0.00 35.06 3.93
2142 2218 2.840651 AGTATCAAGCTAAGTGGTGGCT 59.159 45.455 0.00 0.00 37.99 4.75
2143 2219 3.268023 AGTATCAAGCTAAGTGGTGGC 57.732 47.619 0.00 0.00 0.00 5.01
2144 2220 4.141937 TGCTAGTATCAAGCTAAGTGGTGG 60.142 45.833 0.00 0.00 40.73 4.61
2145 2221 5.011090 TGCTAGTATCAAGCTAAGTGGTG 57.989 43.478 0.00 0.00 40.73 4.17
2146 2222 5.677319 TTGCTAGTATCAAGCTAAGTGGT 57.323 39.130 0.00 0.00 40.73 4.16
2147 2223 8.715998 CATATTTGCTAGTATCAAGCTAAGTGG 58.284 37.037 0.00 0.00 37.93 4.00
2148 2224 8.226448 GCATATTTGCTAGTATCAAGCTAAGTG 58.774 37.037 0.35 0.00 45.77 3.16
2149 2225 8.316640 GCATATTTGCTAGTATCAAGCTAAGT 57.683 34.615 0.35 0.00 45.77 2.24
2166 2242 1.139226 GCAACGCACGGGCATATTTG 61.139 55.000 11.77 8.22 41.24 2.32
2167 2243 1.138671 GCAACGCACGGGCATATTT 59.861 52.632 11.77 0.00 41.24 1.40
2168 2244 1.590610 TTGCAACGCACGGGCATATT 61.591 50.000 11.77 0.00 38.71 1.28
2169 2245 1.590610 TTTGCAACGCACGGGCATAT 61.591 50.000 11.77 0.00 38.71 1.78
2170 2246 2.193865 CTTTGCAACGCACGGGCATA 62.194 55.000 11.77 7.07 38.71 3.14
2171 2247 3.556543 CTTTGCAACGCACGGGCAT 62.557 57.895 11.77 0.00 38.71 4.40
2172 2248 4.263209 CTTTGCAACGCACGGGCA 62.263 61.111 11.77 7.43 38.71 5.36
2173 2249 4.999939 CCTTTGCAACGCACGGGC 63.000 66.667 0.00 0.00 38.71 6.13
2174 2250 2.731587 CTTCCTTTGCAACGCACGGG 62.732 60.000 0.00 0.00 38.71 5.28
2175 2251 1.370414 CTTCCTTTGCAACGCACGG 60.370 57.895 0.00 0.00 38.71 4.94
2176 2252 0.028770 TTCTTCCTTTGCAACGCACG 59.971 50.000 0.00 0.00 38.71 5.34
2177 2253 2.202295 TTTCTTCCTTTGCAACGCAC 57.798 45.000 0.00 0.00 38.71 5.34
2178 2254 2.926838 GTTTTTCTTCCTTTGCAACGCA 59.073 40.909 0.00 0.00 36.47 5.24
2179 2255 3.186909 AGTTTTTCTTCCTTTGCAACGC 58.813 40.909 0.00 0.00 0.00 4.84
2180 2256 8.073768 TCTAATAGTTTTTCTTCCTTTGCAACG 58.926 33.333 0.00 0.00 0.00 4.10
2181 2257 9.914131 ATCTAATAGTTTTTCTTCCTTTGCAAC 57.086 29.630 0.00 0.00 0.00 4.17
2189 2265 9.651718 CGTGCATAATCTAATAGTTTTTCTTCC 57.348 33.333 0.00 0.00 0.00 3.46
2191 2267 9.988350 CACGTGCATAATCTAATAGTTTTTCTT 57.012 29.630 0.82 0.00 0.00 2.52
2192 2268 8.122952 GCACGTGCATAATCTAATAGTTTTTCT 58.877 33.333 34.52 0.00 41.59 2.52
2193 2269 8.258047 GCACGTGCATAATCTAATAGTTTTTC 57.742 34.615 34.52 0.00 41.59 2.29
2231 2307 4.770010 TCCTAGCATTTGGTTCGGATTTTT 59.230 37.500 0.00 0.00 0.00 1.94
2232 2308 4.340617 TCCTAGCATTTGGTTCGGATTTT 58.659 39.130 0.00 0.00 0.00 1.82
2233 2309 3.963129 TCCTAGCATTTGGTTCGGATTT 58.037 40.909 0.00 0.00 0.00 2.17
2234 2310 3.644966 TCCTAGCATTTGGTTCGGATT 57.355 42.857 0.00 0.00 0.00 3.01
2235 2311 3.136443 TCATCCTAGCATTTGGTTCGGAT 59.864 43.478 7.19 7.19 36.05 4.18
2236 2312 2.503765 TCATCCTAGCATTTGGTTCGGA 59.496 45.455 0.00 3.87 0.00 4.55
2237 2313 2.874701 CTCATCCTAGCATTTGGTTCGG 59.125 50.000 0.00 0.00 0.00 4.30
2238 2314 3.797039 TCTCATCCTAGCATTTGGTTCG 58.203 45.455 0.00 0.00 0.00 3.95
2239 2315 6.429385 CCTTATCTCATCCTAGCATTTGGTTC 59.571 42.308 0.00 0.00 0.00 3.62
2240 2316 6.101734 TCCTTATCTCATCCTAGCATTTGGTT 59.898 38.462 0.00 0.00 0.00 3.67
2241 2317 5.608437 TCCTTATCTCATCCTAGCATTTGGT 59.392 40.000 0.00 0.00 0.00 3.67
2242 2318 5.936956 GTCCTTATCTCATCCTAGCATTTGG 59.063 44.000 0.00 0.00 0.00 3.28
2243 2319 6.767456 AGTCCTTATCTCATCCTAGCATTTG 58.233 40.000 0.00 0.00 0.00 2.32
2244 2320 7.385894 AAGTCCTTATCTCATCCTAGCATTT 57.614 36.000 0.00 0.00 0.00 2.32
2245 2321 7.385894 AAAGTCCTTATCTCATCCTAGCATT 57.614 36.000 0.00 0.00 0.00 3.56
2246 2322 7.385894 AAAAGTCCTTATCTCATCCTAGCAT 57.614 36.000 0.00 0.00 0.00 3.79
2247 2323 6.814954 AAAAGTCCTTATCTCATCCTAGCA 57.185 37.500 0.00 0.00 0.00 3.49
2248 2324 8.184304 TCTAAAAGTCCTTATCTCATCCTAGC 57.816 38.462 0.00 0.00 0.00 3.42
2251 2327 8.997734 ACATTCTAAAAGTCCTTATCTCATCCT 58.002 33.333 0.00 0.00 0.00 3.24
2274 2350 9.920946 ACCCAGACATACTTTATGAAATTACAT 57.079 29.630 0.16 0.00 39.45 2.29
2275 2351 9.173021 CACCCAGACATACTTTATGAAATTACA 57.827 33.333 0.16 0.00 39.45 2.41
2276 2352 9.391006 TCACCCAGACATACTTTATGAAATTAC 57.609 33.333 0.16 0.00 39.45 1.89
2278 2354 8.906867 CATCACCCAGACATACTTTATGAAATT 58.093 33.333 0.16 0.00 39.45 1.82
2279 2355 8.055181 ACATCACCCAGACATACTTTATGAAAT 58.945 33.333 0.16 0.00 39.45 2.17
2280 2356 7.402054 ACATCACCCAGACATACTTTATGAAA 58.598 34.615 0.16 0.00 39.45 2.69
2281 2357 6.957631 ACATCACCCAGACATACTTTATGAA 58.042 36.000 0.16 0.00 39.45 2.57
2282 2358 6.156083 TGACATCACCCAGACATACTTTATGA 59.844 38.462 0.16 0.00 39.45 2.15
2283 2359 6.348498 TGACATCACCCAGACATACTTTATG 58.652 40.000 0.00 0.00 41.88 1.90
2284 2360 6.560003 TGACATCACCCAGACATACTTTAT 57.440 37.500 0.00 0.00 0.00 1.40
2285 2361 6.156083 TCATGACATCACCCAGACATACTTTA 59.844 38.462 0.00 0.00 0.00 1.85
2286 2362 4.908601 TGACATCACCCAGACATACTTT 57.091 40.909 0.00 0.00 0.00 2.66
2287 2363 4.471025 TCATGACATCACCCAGACATACTT 59.529 41.667 0.00 0.00 0.00 2.24
2288 2364 4.033009 TCATGACATCACCCAGACATACT 58.967 43.478 0.00 0.00 0.00 2.12
2289 2365 4.122776 GTCATGACATCACCCAGACATAC 58.877 47.826 21.07 0.00 0.00 2.39
2290 2366 3.181476 CGTCATGACATCACCCAGACATA 60.181 47.826 24.93 0.00 0.00 2.29
2291 2367 2.419159 CGTCATGACATCACCCAGACAT 60.419 50.000 24.93 0.00 0.00 3.06
2292 2368 1.066929 CGTCATGACATCACCCAGACA 60.067 52.381 24.93 0.00 0.00 3.41
2293 2369 1.204704 TCGTCATGACATCACCCAGAC 59.795 52.381 24.93 0.00 0.00 3.51
2294 2370 1.478105 CTCGTCATGACATCACCCAGA 59.522 52.381 24.93 10.55 0.00 3.86
2295 2371 1.478105 TCTCGTCATGACATCACCCAG 59.522 52.381 24.93 6.71 0.00 4.45
2296 2372 1.555967 TCTCGTCATGACATCACCCA 58.444 50.000 24.93 0.00 0.00 4.51
2297 2373 2.898729 ATCTCGTCATGACATCACCC 57.101 50.000 24.93 0.00 0.00 4.61
2298 2374 4.302455 CCTTATCTCGTCATGACATCACC 58.698 47.826 24.93 0.00 0.00 4.02
2299 2375 4.038042 TCCCTTATCTCGTCATGACATCAC 59.962 45.833 24.93 0.00 0.00 3.06
2300 2376 4.038042 GTCCCTTATCTCGTCATGACATCA 59.962 45.833 24.93 8.25 0.00 3.07
2301 2377 4.279671 AGTCCCTTATCTCGTCATGACATC 59.720 45.833 24.93 0.00 0.00 3.06
2302 2378 4.219115 AGTCCCTTATCTCGTCATGACAT 58.781 43.478 24.93 13.59 0.00 3.06
2303 2379 3.632333 AGTCCCTTATCTCGTCATGACA 58.368 45.455 24.93 11.49 0.00 3.58
2304 2380 4.657436 AAGTCCCTTATCTCGTCATGAC 57.343 45.455 16.21 16.21 0.00 3.06
2305 2381 5.677319 AAAAGTCCCTTATCTCGTCATGA 57.323 39.130 0.00 0.00 0.00 3.07
2306 2382 7.843490 TTTAAAAGTCCCTTATCTCGTCATG 57.157 36.000 0.00 0.00 0.00 3.07
2307 2383 8.857694 TTTTTAAAAGTCCCTTATCTCGTCAT 57.142 30.769 0.14 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.