Multiple sequence alignment - TraesCS1B01G270900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G270900 chr1B 100.000 4913 0 0 1 4913 476075299 476080211 0.000000e+00 9073.0
1 TraesCS1B01G270900 chr1B 94.511 583 28 2 1662 2242 16975974 16975394 0.000000e+00 896.0
2 TraesCS1B01G270900 chr1B 86.275 51 6 1 618 668 595319764 595319715 2.000000e-03 54.7
3 TraesCS1B01G270900 chr1A 93.737 3784 182 27 759 4515 454341603 454345358 0.000000e+00 5624.0
4 TraesCS1B01G270900 chr1A 90.578 658 30 13 39 668 321890321 321889668 0.000000e+00 843.0
5 TraesCS1B01G270900 chr1A 85.461 282 14 6 4540 4804 454345433 454345704 8.110000e-68 268.0
6 TraesCS1B01G270900 chr1A 90.090 111 11 0 4803 4913 454515496 454515606 1.430000e-30 145.0
7 TraesCS1B01G270900 chr1D 95.561 2253 74 8 755 2985 354515729 354517977 0.000000e+00 3583.0
8 TraesCS1B01G270900 chr1D 92.425 1307 68 17 3222 4515 354519014 354520302 0.000000e+00 1836.0
9 TraesCS1B01G270900 chr1D 87.256 769 61 15 801 1558 393908518 393907776 0.000000e+00 843.0
10 TraesCS1B01G270900 chr1D 94.902 255 10 1 2971 3225 354518671 354518922 3.560000e-106 396.0
11 TraesCS1B01G270900 chr1D 92.453 265 12 4 4540 4804 354522369 354522625 6.010000e-99 372.0
12 TraesCS1B01G270900 chr1D 92.857 112 7 1 4803 4913 354522948 354523059 1.420000e-35 161.0
13 TraesCS1B01G270900 chr4B 98.051 667 12 1 1 666 422036347 422035681 0.000000e+00 1158.0
14 TraesCS1B01G270900 chr2A 89.040 885 64 10 801 1663 9146587 9147460 0.000000e+00 1066.0
15 TraesCS1B01G270900 chr2A 94.281 577 28 3 1662 2236 9147541 9148114 0.000000e+00 878.0
16 TraesCS1B01G270900 chr7B 88.701 885 62 21 789 1663 652159721 652158865 0.000000e+00 1046.0
17 TraesCS1B01G270900 chr7B 88.375 843 64 18 789 1621 745369388 745370206 0.000000e+00 983.0
18 TraesCS1B01G270900 chr7B 81.250 160 28 2 4635 4793 548496765 548496923 1.440000e-25 128.0
19 TraesCS1B01G270900 chr2D 88.876 872 61 23 802 1663 473442702 473441857 0.000000e+00 1040.0
20 TraesCS1B01G270900 chr2D 95.181 581 25 2 1662 2242 473441775 473441198 0.000000e+00 915.0
21 TraesCS1B01G270900 chr2D 91.736 363 26 4 1 362 58637617 58637258 7.340000e-138 501.0
22 TraesCS1B01G270900 chr6D 88.774 873 63 19 801 1663 183820087 183820934 0.000000e+00 1037.0
23 TraesCS1B01G270900 chr6D 87.500 48 5 1 618 665 340463229 340463275 2.000000e-03 54.7
24 TraesCS1B01G270900 chr6A 88.071 897 74 14 789 1663 55246582 55247467 0.000000e+00 1033.0
25 TraesCS1B01G270900 chr6A 93.997 583 32 2 1662 2242 55247548 55248129 0.000000e+00 880.0
26 TraesCS1B01G270900 chr3A 88.196 898 61 17 789 1663 737574687 737573812 0.000000e+00 1029.0
27 TraesCS1B01G270900 chr3A 92.097 658 21 14 39 668 171181425 171180771 0.000000e+00 898.0
28 TraesCS1B01G270900 chr2B 88.023 885 72 19 789 1663 619716405 619717265 0.000000e+00 1016.0
29 TraesCS1B01G270900 chr2B 92.027 301 19 4 74 371 780664842 780664544 7.610000e-113 418.0
30 TraesCS1B01G270900 chr5B 88.023 885 71 15 789 1663 547611026 547610167 0.000000e+00 1014.0
31 TraesCS1B01G270900 chr5B 88.023 885 68 20 789 1663 260021118 260020262 0.000000e+00 1013.0
32 TraesCS1B01G270900 chr5B 87.955 880 70 11 794 1663 225782233 225783086 0.000000e+00 1005.0
33 TraesCS1B01G270900 chr5B 94.320 581 30 3 1662 2242 547610085 547609508 0.000000e+00 887.0
34 TraesCS1B01G270900 chr5B 82.979 141 22 2 4638 4777 345614838 345614699 5.160000e-25 126.0
35 TraesCS1B01G270900 chr3B 87.571 885 76 18 789 1663 635791804 635790944 0.000000e+00 994.0
36 TraesCS1B01G270900 chr3B 92.308 273 18 2 398 668 719851461 719851190 7.710000e-103 385.0
37 TraesCS1B01G270900 chr3B 84.848 66 8 2 604 668 775446104 775446040 1.140000e-06 65.8
38 TraesCS1B01G270900 chr5D 94.664 581 28 2 1662 2242 516475517 516476094 0.000000e+00 898.0
39 TraesCS1B01G270900 chr5D 88.266 767 57 16 801 1558 27476405 27475663 0.000000e+00 887.0
40 TraesCS1B01G270900 chrUn 94.664 581 26 4 1662 2241 105197456 105196880 0.000000e+00 896.0
41 TraesCS1B01G270900 chr3D 87.484 767 61 16 802 1558 552588713 552587972 0.000000e+00 852.0
42 TraesCS1B01G270900 chr4A 89.620 684 48 18 1 669 610048272 610047597 0.000000e+00 848.0
43 TraesCS1B01G270900 chr4A 84.806 645 65 10 801 1423 129759844 129759211 6.990000e-173 617.0
44 TraesCS1B01G270900 chr4A 83.333 144 21 3 4635 4777 336927268 336927409 3.990000e-26 130.0
45 TraesCS1B01G270900 chr7A 85.276 163 20 3 4625 4786 680536804 680536963 1.090000e-36 165.0
46 TraesCS1B01G270900 chr4D 86.207 145 16 4 4635 4777 290727873 290727731 2.370000e-33 154.0
47 TraesCS1B01G270900 chr4D 85.417 144 19 2 4635 4777 290690923 290690781 1.100000e-31 148.0
48 TraesCS1B01G270900 chr7D 84.028 144 20 3 4635 4777 383805689 383805548 8.580000e-28 135.0
49 TraesCS1B01G270900 chr5A 97.297 37 1 0 618 654 261913378 261913342 4.110000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G270900 chr1B 476075299 476080211 4912 False 9073.0 9073 100.0000 1 4913 1 chr1B.!!$F1 4912
1 TraesCS1B01G270900 chr1B 16975394 16975974 580 True 896.0 896 94.5110 1662 2242 1 chr1B.!!$R1 580
2 TraesCS1B01G270900 chr1A 454341603 454345704 4101 False 2946.0 5624 89.5990 759 4804 2 chr1A.!!$F2 4045
3 TraesCS1B01G270900 chr1A 321889668 321890321 653 True 843.0 843 90.5780 39 668 1 chr1A.!!$R1 629
4 TraesCS1B01G270900 chr1D 354515729 354523059 7330 False 1269.6 3583 93.6396 755 4913 5 chr1D.!!$F1 4158
5 TraesCS1B01G270900 chr1D 393907776 393908518 742 True 843.0 843 87.2560 801 1558 1 chr1D.!!$R1 757
6 TraesCS1B01G270900 chr4B 422035681 422036347 666 True 1158.0 1158 98.0510 1 666 1 chr4B.!!$R1 665
7 TraesCS1B01G270900 chr2A 9146587 9148114 1527 False 972.0 1066 91.6605 801 2236 2 chr2A.!!$F1 1435
8 TraesCS1B01G270900 chr7B 652158865 652159721 856 True 1046.0 1046 88.7010 789 1663 1 chr7B.!!$R1 874
9 TraesCS1B01G270900 chr7B 745369388 745370206 818 False 983.0 983 88.3750 789 1621 1 chr7B.!!$F2 832
10 TraesCS1B01G270900 chr2D 473441198 473442702 1504 True 977.5 1040 92.0285 802 2242 2 chr2D.!!$R2 1440
11 TraesCS1B01G270900 chr6D 183820087 183820934 847 False 1037.0 1037 88.7740 801 1663 1 chr6D.!!$F1 862
12 TraesCS1B01G270900 chr6A 55246582 55248129 1547 False 956.5 1033 91.0340 789 2242 2 chr6A.!!$F1 1453
13 TraesCS1B01G270900 chr3A 737573812 737574687 875 True 1029.0 1029 88.1960 789 1663 1 chr3A.!!$R2 874
14 TraesCS1B01G270900 chr3A 171180771 171181425 654 True 898.0 898 92.0970 39 668 1 chr3A.!!$R1 629
15 TraesCS1B01G270900 chr2B 619716405 619717265 860 False 1016.0 1016 88.0230 789 1663 1 chr2B.!!$F1 874
16 TraesCS1B01G270900 chr5B 260020262 260021118 856 True 1013.0 1013 88.0230 789 1663 1 chr5B.!!$R1 874
17 TraesCS1B01G270900 chr5B 225782233 225783086 853 False 1005.0 1005 87.9550 794 1663 1 chr5B.!!$F1 869
18 TraesCS1B01G270900 chr5B 547609508 547611026 1518 True 950.5 1014 91.1715 789 2242 2 chr5B.!!$R3 1453
19 TraesCS1B01G270900 chr3B 635790944 635791804 860 True 994.0 994 87.5710 789 1663 1 chr3B.!!$R1 874
20 TraesCS1B01G270900 chr5D 516475517 516476094 577 False 898.0 898 94.6640 1662 2242 1 chr5D.!!$F1 580
21 TraesCS1B01G270900 chr5D 27475663 27476405 742 True 887.0 887 88.2660 801 1558 1 chr5D.!!$R1 757
22 TraesCS1B01G270900 chrUn 105196880 105197456 576 True 896.0 896 94.6640 1662 2241 1 chrUn.!!$R1 579
23 TraesCS1B01G270900 chr3D 552587972 552588713 741 True 852.0 852 87.4840 802 1558 1 chr3D.!!$R1 756
24 TraesCS1B01G270900 chr4A 610047597 610048272 675 True 848.0 848 89.6200 1 669 1 chr4A.!!$R2 668
25 TraesCS1B01G270900 chr4A 129759211 129759844 633 True 617.0 617 84.8060 801 1423 1 chr4A.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 267 0.318784 GAAGAAGACGACTGCGGTGT 60.319 55.000 0.80 0.97 43.17 4.16 F
735 763 0.396435 TGTGTCATCCGGCTCAAGTT 59.604 50.000 0.00 0.00 0.00 2.66 F
743 771 0.804989 CCGGCTCAAGTTTGATGACC 59.195 55.000 0.00 0.00 36.46 4.02 F
1229 1281 1.467342 GTGTTCGGTCAATTGCCCTAC 59.533 52.381 3.68 2.65 0.00 3.18 F
2366 2592 1.694150 AGAAGCTATGCCCGCTGAATA 59.306 47.619 0.00 0.00 37.87 1.75 F
3283 4323 2.724977 TCTACTGGAGCAGTTTGTCG 57.275 50.000 0.00 0.00 42.59 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1281 0.322098 TGACACCCTATTGGCGGTTG 60.322 55.000 0.00 0.0 37.83 3.77 R
2343 2569 0.745845 CAGCGGGCATAGCTTCTTGT 60.746 55.000 0.00 0.0 44.06 3.16 R
2467 2693 3.202906 TGTTACAGCACTTCAACAGGAC 58.797 45.455 0.00 0.0 0.00 3.85 R
3055 3999 1.818642 GATGCAGGTATGAGCCCATC 58.181 55.000 0.00 0.0 34.31 3.51 R
3554 4596 0.685097 TGGACACCAGACCTTAGCAC 59.315 55.000 0.00 0.0 0.00 4.40 R
4519 5572 0.478072 TCCCAGCTGCTTCCTTTGAA 59.522 50.000 8.66 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.304713 CTGGAAGGGGCAGCACAAT 60.305 57.895 0.00 0.00 0.00 2.71
48 49 0.901580 CTGGAAGGGGCAGCACAATT 60.902 55.000 0.00 0.00 0.00 2.32
265 267 0.318784 GAAGAAGACGACTGCGGTGT 60.319 55.000 0.80 0.97 43.17 4.16
585 613 1.075536 GGGAGGAGGAGGAGAGATCTC 59.924 61.905 15.29 15.29 42.14 2.75
617 645 2.218953 GTGCAAATCGGACGGATCTA 57.781 50.000 0.00 0.00 33.02 1.98
677 705 2.824041 CGCTGCCCCGCAAGTATT 60.824 61.111 0.00 0.00 38.41 1.89
678 706 2.406616 CGCTGCCCCGCAAGTATTT 61.407 57.895 0.00 0.00 38.41 1.40
679 707 1.092921 CGCTGCCCCGCAAGTATTTA 61.093 55.000 0.00 0.00 38.41 1.40
680 708 0.663153 GCTGCCCCGCAAGTATTTAG 59.337 55.000 0.00 0.00 38.41 1.85
681 709 1.745827 GCTGCCCCGCAAGTATTTAGA 60.746 52.381 0.00 0.00 38.41 2.10
682 710 1.940613 CTGCCCCGCAAGTATTTAGAC 59.059 52.381 0.00 0.00 38.41 2.59
683 711 1.306148 GCCCCGCAAGTATTTAGACC 58.694 55.000 0.00 0.00 0.00 3.85
684 712 1.578583 CCCCGCAAGTATTTAGACCG 58.421 55.000 0.00 0.00 0.00 4.79
685 713 1.134610 CCCCGCAAGTATTTAGACCGT 60.135 52.381 0.00 0.00 0.00 4.83
686 714 2.101249 CCCCGCAAGTATTTAGACCGTA 59.899 50.000 0.00 0.00 0.00 4.02
687 715 3.378339 CCCGCAAGTATTTAGACCGTAG 58.622 50.000 0.00 0.00 0.00 3.51
688 716 3.181483 CCCGCAAGTATTTAGACCGTAGT 60.181 47.826 0.00 0.00 0.00 2.73
689 717 4.427312 CCGCAAGTATTTAGACCGTAGTT 58.573 43.478 0.00 0.00 0.00 2.24
690 718 4.866486 CCGCAAGTATTTAGACCGTAGTTT 59.134 41.667 0.00 0.00 0.00 2.66
691 719 6.035843 CCGCAAGTATTTAGACCGTAGTTTA 58.964 40.000 0.00 0.00 0.00 2.01
692 720 6.197842 CCGCAAGTATTTAGACCGTAGTTTAG 59.802 42.308 0.00 0.00 0.00 1.85
693 721 6.197842 CGCAAGTATTTAGACCGTAGTTTAGG 59.802 42.308 0.00 0.00 0.00 2.69
694 722 7.038048 GCAAGTATTTAGACCGTAGTTTAGGT 58.962 38.462 0.00 0.00 44.64 3.08
695 723 8.190784 GCAAGTATTTAGACCGTAGTTTAGGTA 58.809 37.037 0.00 0.00 41.51 3.08
702 730 9.995003 TTTAGACCGTAGTTTAGGTATTTTGAA 57.005 29.630 0.00 0.00 41.51 2.69
703 731 9.643693 TTAGACCGTAGTTTAGGTATTTTGAAG 57.356 33.333 0.00 0.00 41.51 3.02
704 732 7.674120 AGACCGTAGTTTAGGTATTTTGAAGT 58.326 34.615 0.00 0.00 41.51 3.01
705 733 8.806146 AGACCGTAGTTTAGGTATTTTGAAGTA 58.194 33.333 0.00 0.00 41.51 2.24
706 734 8.992835 ACCGTAGTTTAGGTATTTTGAAGTAG 57.007 34.615 0.00 0.00 39.30 2.57
707 735 8.588472 ACCGTAGTTTAGGTATTTTGAAGTAGT 58.412 33.333 0.00 0.00 39.30 2.73
708 736 8.866956 CCGTAGTTTAGGTATTTTGAAGTAGTG 58.133 37.037 0.00 0.00 0.00 2.74
709 737 8.866956 CGTAGTTTAGGTATTTTGAAGTAGTGG 58.133 37.037 0.00 0.00 0.00 4.00
710 738 9.716531 GTAGTTTAGGTATTTTGAAGTAGTGGT 57.283 33.333 0.00 0.00 0.00 4.16
722 750 9.562408 TTTTGAAGTAGTGGTATAAATGTGTCA 57.438 29.630 0.00 0.00 0.00 3.58
723 751 9.733556 TTTGAAGTAGTGGTATAAATGTGTCAT 57.266 29.630 0.00 0.00 0.00 3.06
724 752 8.942338 TGAAGTAGTGGTATAAATGTGTCATC 57.058 34.615 0.00 0.00 0.00 2.92
725 753 7.985184 TGAAGTAGTGGTATAAATGTGTCATCC 59.015 37.037 0.00 0.00 0.00 3.51
726 754 6.513180 AGTAGTGGTATAAATGTGTCATCCG 58.487 40.000 0.00 0.00 0.00 4.18
727 755 4.703897 AGTGGTATAAATGTGTCATCCGG 58.296 43.478 0.00 0.00 0.00 5.14
728 756 3.250040 GTGGTATAAATGTGTCATCCGGC 59.750 47.826 0.00 0.00 0.00 6.13
729 757 3.135712 TGGTATAAATGTGTCATCCGGCT 59.864 43.478 0.00 0.00 0.00 5.52
730 758 3.746492 GGTATAAATGTGTCATCCGGCTC 59.254 47.826 0.00 0.00 0.00 4.70
731 759 3.558931 ATAAATGTGTCATCCGGCTCA 57.441 42.857 0.00 0.00 0.00 4.26
732 760 2.198827 AAATGTGTCATCCGGCTCAA 57.801 45.000 0.00 0.00 0.00 3.02
733 761 1.742761 AATGTGTCATCCGGCTCAAG 58.257 50.000 0.00 0.00 0.00 3.02
734 762 0.615331 ATGTGTCATCCGGCTCAAGT 59.385 50.000 0.00 0.00 0.00 3.16
735 763 0.396435 TGTGTCATCCGGCTCAAGTT 59.604 50.000 0.00 0.00 0.00 2.66
736 764 1.202758 TGTGTCATCCGGCTCAAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
737 765 1.197721 GTGTCATCCGGCTCAAGTTTG 59.802 52.381 0.00 0.00 0.00 2.93
738 766 1.071542 TGTCATCCGGCTCAAGTTTGA 59.928 47.619 0.00 0.00 35.57 2.69
739 767 2.290260 TGTCATCCGGCTCAAGTTTGAT 60.290 45.455 0.00 0.00 36.46 2.57
740 768 2.096496 GTCATCCGGCTCAAGTTTGATG 59.904 50.000 0.00 0.00 36.46 3.07
741 769 2.027285 TCATCCGGCTCAAGTTTGATGA 60.027 45.455 0.00 0.00 37.02 2.92
742 770 1.808411 TCCGGCTCAAGTTTGATGAC 58.192 50.000 0.00 0.00 36.46 3.06
743 771 0.804989 CCGGCTCAAGTTTGATGACC 59.195 55.000 0.00 0.00 36.46 4.02
744 772 1.611673 CCGGCTCAAGTTTGATGACCT 60.612 52.381 0.00 0.00 36.46 3.85
745 773 2.354704 CCGGCTCAAGTTTGATGACCTA 60.355 50.000 0.00 0.00 36.46 3.08
746 774 2.932614 CGGCTCAAGTTTGATGACCTAG 59.067 50.000 0.00 0.00 36.46 3.02
747 775 3.368427 CGGCTCAAGTTTGATGACCTAGA 60.368 47.826 0.00 0.00 36.46 2.43
748 776 4.187694 GGCTCAAGTTTGATGACCTAGAG 58.812 47.826 0.00 0.00 36.46 2.43
749 777 4.081420 GGCTCAAGTTTGATGACCTAGAGA 60.081 45.833 0.00 0.00 36.46 3.10
750 778 5.108517 GCTCAAGTTTGATGACCTAGAGAG 58.891 45.833 0.00 0.00 36.46 3.20
751 779 5.105554 GCTCAAGTTTGATGACCTAGAGAGA 60.106 44.000 0.00 0.00 36.46 3.10
752 780 6.274157 TCAAGTTTGATGACCTAGAGAGAC 57.726 41.667 0.00 0.00 31.01 3.36
753 781 5.775195 TCAAGTTTGATGACCTAGAGAGACA 59.225 40.000 0.00 0.00 31.01 3.41
756 784 5.362430 AGTTTGATGACCTAGAGAGACATCC 59.638 44.000 0.00 0.00 36.43 3.51
761 789 3.769844 TGACCTAGAGAGACATCCCAAAC 59.230 47.826 0.00 0.00 0.00 2.93
855 891 2.685999 GCAAATCTCCCCCAGGCT 59.314 61.111 0.00 0.00 0.00 4.58
1156 1208 2.992114 ACGCCGGAGTCTGAAGCT 60.992 61.111 5.05 0.00 0.00 3.74
1229 1281 1.467342 GTGTTCGGTCAATTGCCCTAC 59.533 52.381 3.68 2.65 0.00 3.18
1310 1362 5.248380 AGGAACCATGAAGCTTTAGAGTT 57.752 39.130 0.00 4.35 0.00 3.01
1582 1716 5.841957 AAATATGGTGCATTCTCCTTCAC 57.158 39.130 0.00 0.00 0.00 3.18
1672 1889 8.692710 CCTTTACATGTCATCTAGTTACCACTA 58.307 37.037 0.00 0.00 34.06 2.74
1720 1937 3.482436 ACTGTTTTGAATAGGAACGGCA 58.518 40.909 0.00 0.00 33.92 5.69
1792 2009 2.519780 GTTTCAACCGGCACCCCA 60.520 61.111 0.00 0.00 0.00 4.96
1917 2134 8.022550 TCATATTTGCAATACTGAACTGTTGTG 58.977 33.333 0.00 0.00 0.00 3.33
1993 2212 3.118112 ACTCCAGGATCATGCTGTTAAGG 60.118 47.826 5.32 0.00 33.66 2.69
2033 2252 9.593134 GCCCACTACATCTCTAATTATTGATAG 57.407 37.037 0.00 0.00 0.00 2.08
2047 2266 6.681729 TTATTGATAGCCTATTCCGGTTCT 57.318 37.500 0.00 0.00 0.00 3.01
2284 2510 6.459066 TCAGATGAGGTACAGAAACTCAAAG 58.541 40.000 0.00 0.00 43.65 2.77
2343 2569 3.922131 TGATATGGGAATATGAAGGGCCA 59.078 43.478 6.18 0.00 0.00 5.36
2366 2592 1.694150 AGAAGCTATGCCCGCTGAATA 59.306 47.619 0.00 0.00 37.87 1.75
2467 2693 7.369803 AGTTTTCTGTGTATCTTGTGCTATG 57.630 36.000 0.00 0.00 0.00 2.23
2530 2756 8.759481 TCAATCTGCTTTCTTATCTCTCTCTA 57.241 34.615 0.00 0.00 0.00 2.43
2723 2949 5.975988 TTAGAAATAGAGGCCCTTGATGT 57.024 39.130 0.00 0.00 0.00 3.06
2800 3026 6.972328 CGAGGTATGGGTTTATTCAACATTTG 59.028 38.462 0.00 0.00 37.07 2.32
2807 3033 7.512992 TGGGTTTATTCAACATTTGGTTCATT 58.487 30.769 0.00 0.00 37.72 2.57
2905 3132 9.605955 CTTTGTTCATGTCATTATTTGTCGTTA 57.394 29.630 0.00 0.00 0.00 3.18
2998 3942 9.423061 ACTGCCAATTTTTCACAATTACTATTC 57.577 29.630 0.00 0.00 0.00 1.75
3037 3981 6.258068 GGAAAGATGTCCTAGTAAATGGTTCG 59.742 42.308 0.00 0.00 34.56 3.95
3088 4032 3.261580 CCTGCATCGTACAATGAACTGA 58.738 45.455 0.00 0.00 0.00 3.41
3234 4273 6.839657 AGTGGCTTGATAAGTAGTAGGTACAT 59.160 38.462 0.00 0.00 33.55 2.29
3283 4323 2.724977 TCTACTGGAGCAGTTTGTCG 57.275 50.000 0.00 0.00 42.59 4.35
3390 4430 6.319152 TGAACCTGAAGTAGTACTGAGCTATC 59.681 42.308 5.39 0.00 0.00 2.08
3411 4453 8.609176 GCTATCCTAAATCGATTTTGTTGTGTA 58.391 33.333 27.10 7.08 0.00 2.90
3483 4525 7.497773 ACTCTACTACTCCTTTATGCCTTTT 57.502 36.000 0.00 0.00 0.00 2.27
3512 4554 5.067805 ACCTACTCTTTTTGGCAAAGACTTG 59.932 40.000 13.04 6.63 33.20 3.16
3554 4596 3.261897 ACTCTATGTCAGGGTGTGGAAAG 59.738 47.826 0.00 0.00 36.25 2.62
3562 4604 1.073923 AGGGTGTGGAAAGTGCTAAGG 59.926 52.381 0.00 0.00 0.00 2.69
3774 4825 2.990066 ACCTAGATTTCTTGCGGGAG 57.010 50.000 0.00 0.00 0.00 4.30
3915 4966 4.331717 ACTTTCGAAGTTGTGGTGTAAGTG 59.668 41.667 0.00 0.00 39.04 3.16
3935 4986 4.520111 AGTGTTGCAATAAAGCTGATGACA 59.480 37.500 0.59 0.00 34.99 3.58
4023 5075 2.603075 AGGCACACATGTACCCATTT 57.397 45.000 0.00 0.00 31.71 2.32
4074 5126 4.272504 AGGTTCCATACAAATGTAATCGCG 59.727 41.667 0.00 0.00 33.76 5.87
4131 5183 3.372206 CAGTGCAGTGTAATTAGCCAGTC 59.628 47.826 13.67 0.00 0.00 3.51
4169 5221 1.156736 GTTGCCAGCTTACACGACAT 58.843 50.000 0.00 0.00 0.00 3.06
4171 5223 1.155889 TGCCAGCTTACACGACATTG 58.844 50.000 0.00 0.00 0.00 2.82
4184 5236 3.076621 ACGACATTGTCAGTGCATTGAT 58.923 40.909 15.51 0.00 32.09 2.57
4238 5290 1.974236 CTCTCAGGGTCTGGTCTGTTT 59.026 52.381 0.00 0.00 33.13 2.83
4239 5291 1.694150 TCTCAGGGTCTGGTCTGTTTG 59.306 52.381 0.00 0.00 33.13 2.93
4240 5292 1.417890 CTCAGGGTCTGGTCTGTTTGT 59.582 52.381 0.00 0.00 33.13 2.83
4241 5293 1.843851 TCAGGGTCTGGTCTGTTTGTT 59.156 47.619 0.00 0.00 33.13 2.83
4248 5300 5.491982 GGTCTGGTCTGTTTGTTATCTGAT 58.508 41.667 0.00 0.00 0.00 2.90
4297 5349 5.130292 ACATTTTTCATCTCTGCAGTTGG 57.870 39.130 14.67 5.72 0.00 3.77
4345 5397 6.027749 GTCACTGGTAAACTTTGTTGTCTTG 58.972 40.000 0.00 0.00 0.00 3.02
4447 5499 0.326264 TCTTCCTTTCTGGCAGCTCC 59.674 55.000 10.34 0.00 35.26 4.70
4493 5546 0.675633 TTTCAAAGGAAGCAGCTGGC 59.324 50.000 17.12 7.98 45.30 4.85
4515 5568 2.154567 AGAAGGCATGGCATGTTGAT 57.845 45.000 26.94 12.27 0.00 2.57
4516 5569 1.754803 AGAAGGCATGGCATGTTGATG 59.245 47.619 26.94 4.16 0.00 3.07
4518 5571 1.563924 AGGCATGGCATGTTGATGTT 58.436 45.000 26.94 4.37 31.50 2.71
4519 5572 1.903860 AGGCATGGCATGTTGATGTTT 59.096 42.857 26.94 3.40 31.50 2.83
4520 5573 2.303600 AGGCATGGCATGTTGATGTTTT 59.696 40.909 26.94 1.98 31.50 2.43
4521 5574 2.674357 GGCATGGCATGTTGATGTTTTC 59.326 45.455 26.94 7.50 31.50 2.29
4522 5575 3.327626 GCATGGCATGTTGATGTTTTCA 58.672 40.909 26.94 0.00 31.50 2.69
4523 5576 3.747010 GCATGGCATGTTGATGTTTTCAA 59.253 39.130 26.94 0.00 42.09 2.69
4524 5577 4.213694 GCATGGCATGTTGATGTTTTCAAA 59.786 37.500 26.94 0.00 45.71 2.69
4526 5579 4.378774 TGGCATGTTGATGTTTTCAAAGG 58.621 39.130 0.00 0.00 45.71 3.11
4527 5580 4.100653 TGGCATGTTGATGTTTTCAAAGGA 59.899 37.500 0.00 0.00 45.71 3.36
4528 5581 5.055812 GGCATGTTGATGTTTTCAAAGGAA 58.944 37.500 0.00 0.00 45.71 3.36
4529 5582 5.178067 GGCATGTTGATGTTTTCAAAGGAAG 59.822 40.000 0.00 0.00 45.71 3.46
4530 5583 5.333568 GCATGTTGATGTTTTCAAAGGAAGC 60.334 40.000 0.00 0.00 45.71 3.86
4531 5584 5.336150 TGTTGATGTTTTCAAAGGAAGCA 57.664 34.783 0.00 0.00 45.71 3.91
4534 5587 3.638160 TGATGTTTTCAAAGGAAGCAGCT 59.362 39.130 0.00 0.00 33.82 4.24
4535 5588 3.441496 TGTTTTCAAAGGAAGCAGCTG 57.559 42.857 10.11 10.11 33.82 4.24
4537 5590 1.331214 TTTCAAAGGAAGCAGCTGGG 58.669 50.000 17.12 0.00 33.82 4.45
4538 5591 0.478072 TTCAAAGGAAGCAGCTGGGA 59.522 50.000 17.12 0.00 0.00 4.37
4835 8272 4.759516 TTTAGCCTTTTCGATGGTGTTC 57.240 40.909 0.00 0.00 0.00 3.18
4866 8303 3.433615 GGAGGAGATGTTTTCGTCAACTG 59.566 47.826 2.05 0.00 38.23 3.16
4874 8311 7.257722 AGATGTTTTCGTCAACTGTCAATTTT 58.742 30.769 2.05 0.00 38.23 1.82
4875 8312 6.624710 TGTTTTCGTCAACTGTCAATTTTG 57.375 33.333 2.05 0.00 0.00 2.44
4881 8318 5.458452 TCGTCAACTGTCAATTTTGAAATGC 59.542 36.000 0.00 0.00 39.21 3.56
4883 8320 6.560799 CGTCAACTGTCAATTTTGAAATGCTG 60.561 38.462 0.00 0.00 39.21 4.41
4892 8329 2.177394 TTGAAATGCTGTGTCGGCTA 57.823 45.000 2.33 0.00 36.58 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.970702 GCAATTCTGCTTGTTGGTTGAAACCTA 62.971 40.741 13.21 3.06 46.24 3.08
669 697 7.038048 ACCTAAACTACGGTCTAAATACTTGC 58.962 38.462 0.00 0.00 0.00 4.01
676 704 9.995003 TTCAAAATACCTAAACTACGGTCTAAA 57.005 29.630 0.00 0.00 34.76 1.85
677 705 9.643693 CTTCAAAATACCTAAACTACGGTCTAA 57.356 33.333 0.00 0.00 34.76 2.10
678 706 8.806146 ACTTCAAAATACCTAAACTACGGTCTA 58.194 33.333 0.00 0.00 34.76 2.59
679 707 7.674120 ACTTCAAAATACCTAAACTACGGTCT 58.326 34.615 0.00 0.00 34.76 3.85
680 708 7.895975 ACTTCAAAATACCTAAACTACGGTC 57.104 36.000 0.00 0.00 34.76 4.79
681 709 8.588472 ACTACTTCAAAATACCTAAACTACGGT 58.412 33.333 0.00 0.00 37.31 4.83
682 710 8.866956 CACTACTTCAAAATACCTAAACTACGG 58.133 37.037 0.00 0.00 0.00 4.02
683 711 8.866956 CCACTACTTCAAAATACCTAAACTACG 58.133 37.037 0.00 0.00 0.00 3.51
684 712 9.716531 ACCACTACTTCAAAATACCTAAACTAC 57.283 33.333 0.00 0.00 0.00 2.73
696 724 9.562408 TGACACATTTATACCACTACTTCAAAA 57.438 29.630 0.00 0.00 0.00 2.44
697 725 9.733556 ATGACACATTTATACCACTACTTCAAA 57.266 29.630 0.00 0.00 0.00 2.69
698 726 9.378551 GATGACACATTTATACCACTACTTCAA 57.621 33.333 0.00 0.00 0.00 2.69
699 727 7.985184 GGATGACACATTTATACCACTACTTCA 59.015 37.037 0.00 0.00 0.00 3.02
700 728 7.169308 CGGATGACACATTTATACCACTACTTC 59.831 40.741 0.00 0.00 0.00 3.01
701 729 6.984474 CGGATGACACATTTATACCACTACTT 59.016 38.462 0.00 0.00 0.00 2.24
702 730 6.462487 CCGGATGACACATTTATACCACTACT 60.462 42.308 0.00 0.00 0.00 2.57
703 731 5.694910 CCGGATGACACATTTATACCACTAC 59.305 44.000 0.00 0.00 0.00 2.73
704 732 5.740803 GCCGGATGACACATTTATACCACTA 60.741 44.000 5.05 0.00 0.00 2.74
705 733 4.703897 CCGGATGACACATTTATACCACT 58.296 43.478 0.00 0.00 0.00 4.00
706 734 3.250040 GCCGGATGACACATTTATACCAC 59.750 47.826 5.05 0.00 0.00 4.16
707 735 3.135712 AGCCGGATGACACATTTATACCA 59.864 43.478 5.05 0.00 0.00 3.25
708 736 3.740115 AGCCGGATGACACATTTATACC 58.260 45.455 5.05 0.00 0.00 2.73
709 737 4.377021 TGAGCCGGATGACACATTTATAC 58.623 43.478 5.05 0.00 0.00 1.47
710 738 4.681074 TGAGCCGGATGACACATTTATA 57.319 40.909 5.05 0.00 0.00 0.98
711 739 3.558931 TGAGCCGGATGACACATTTAT 57.441 42.857 5.05 0.00 0.00 1.40
712 740 3.270027 CTTGAGCCGGATGACACATTTA 58.730 45.455 5.05 0.00 0.00 1.40
713 741 2.086869 CTTGAGCCGGATGACACATTT 58.913 47.619 5.05 0.00 0.00 2.32
714 742 1.003580 ACTTGAGCCGGATGACACATT 59.996 47.619 5.05 0.00 0.00 2.71
715 743 0.615331 ACTTGAGCCGGATGACACAT 59.385 50.000 5.05 0.00 0.00 3.21
716 744 0.396435 AACTTGAGCCGGATGACACA 59.604 50.000 5.05 0.00 0.00 3.72
717 745 1.197721 CAAACTTGAGCCGGATGACAC 59.802 52.381 5.05 0.00 0.00 3.67
718 746 1.071542 TCAAACTTGAGCCGGATGACA 59.928 47.619 5.05 0.00 32.50 3.58
719 747 1.808411 TCAAACTTGAGCCGGATGAC 58.192 50.000 5.05 0.00 32.50 3.06
720 748 2.027285 TCATCAAACTTGAGCCGGATGA 60.027 45.455 5.05 0.00 41.08 2.92
721 749 2.096496 GTCATCAAACTTGAGCCGGATG 59.904 50.000 5.05 0.00 41.08 3.51
722 750 2.359900 GTCATCAAACTTGAGCCGGAT 58.640 47.619 5.05 0.00 41.08 4.18
723 751 1.610624 GGTCATCAAACTTGAGCCGGA 60.611 52.381 5.05 0.00 41.08 5.14
724 752 0.804989 GGTCATCAAACTTGAGCCGG 59.195 55.000 0.00 0.00 41.08 6.13
725 753 1.813513 AGGTCATCAAACTTGAGCCG 58.186 50.000 0.00 0.00 41.40 5.52
726 754 4.081420 TCTCTAGGTCATCAAACTTGAGCC 60.081 45.833 0.00 1.34 41.40 4.70
727 755 5.078411 TCTCTAGGTCATCAAACTTGAGC 57.922 43.478 0.00 0.00 41.08 4.26
728 756 6.071672 TGTCTCTCTAGGTCATCAAACTTGAG 60.072 42.308 0.00 0.00 41.08 3.02
729 757 5.775195 TGTCTCTCTAGGTCATCAAACTTGA 59.225 40.000 0.00 0.00 42.14 3.02
730 758 6.030548 TGTCTCTCTAGGTCATCAAACTTG 57.969 41.667 0.00 0.00 0.00 3.16
731 759 6.127196 GGATGTCTCTCTAGGTCATCAAACTT 60.127 42.308 0.00 0.00 36.80 2.66
732 760 5.362430 GGATGTCTCTCTAGGTCATCAAACT 59.638 44.000 0.00 0.00 36.80 2.66
733 761 5.452636 GGGATGTCTCTCTAGGTCATCAAAC 60.453 48.000 0.00 0.00 36.80 2.93
734 762 4.651503 GGGATGTCTCTCTAGGTCATCAAA 59.348 45.833 0.00 0.00 36.80 2.69
735 763 4.219115 GGGATGTCTCTCTAGGTCATCAA 58.781 47.826 0.00 0.00 36.80 2.57
736 764 3.205282 TGGGATGTCTCTCTAGGTCATCA 59.795 47.826 0.00 0.00 36.80 3.07
737 765 3.838565 TGGGATGTCTCTCTAGGTCATC 58.161 50.000 0.00 0.00 35.62 2.92
738 766 3.981516 TGGGATGTCTCTCTAGGTCAT 57.018 47.619 0.00 0.00 0.00 3.06
739 767 3.757947 TTGGGATGTCTCTCTAGGTCA 57.242 47.619 0.00 0.00 0.00 4.02
740 768 3.769844 TGTTTGGGATGTCTCTCTAGGTC 59.230 47.826 0.00 0.00 0.00 3.85
741 769 3.791320 TGTTTGGGATGTCTCTCTAGGT 58.209 45.455 0.00 0.00 0.00 3.08
742 770 4.826274 TTGTTTGGGATGTCTCTCTAGG 57.174 45.455 0.00 0.00 0.00 3.02
743 771 6.042638 TCTTTGTTTGGGATGTCTCTCTAG 57.957 41.667 0.00 0.00 0.00 2.43
744 772 6.433847 TTCTTTGTTTGGGATGTCTCTCTA 57.566 37.500 0.00 0.00 0.00 2.43
745 773 4.982241 TCTTTGTTTGGGATGTCTCTCT 57.018 40.909 0.00 0.00 0.00 3.10
746 774 6.391227 TTTTCTTTGTTTGGGATGTCTCTC 57.609 37.500 0.00 0.00 0.00 3.20
747 775 5.221322 GCTTTTCTTTGTTTGGGATGTCTCT 60.221 40.000 0.00 0.00 0.00 3.10
748 776 4.984785 GCTTTTCTTTGTTTGGGATGTCTC 59.015 41.667 0.00 0.00 0.00 3.36
749 777 4.405358 TGCTTTTCTTTGTTTGGGATGTCT 59.595 37.500 0.00 0.00 0.00 3.41
750 778 4.692228 TGCTTTTCTTTGTTTGGGATGTC 58.308 39.130 0.00 0.00 0.00 3.06
751 779 4.751767 TGCTTTTCTTTGTTTGGGATGT 57.248 36.364 0.00 0.00 0.00 3.06
752 780 5.118286 AGTTGCTTTTCTTTGTTTGGGATG 58.882 37.500 0.00 0.00 0.00 3.51
753 781 5.129320 AGAGTTGCTTTTCTTTGTTTGGGAT 59.871 36.000 0.00 0.00 0.00 3.85
756 784 5.455525 CGTAGAGTTGCTTTTCTTTGTTTGG 59.544 40.000 0.00 0.00 0.00 3.28
761 789 5.418310 TTCCGTAGAGTTGCTTTTCTTTG 57.582 39.130 0.00 0.00 0.00 2.77
806 834 0.108138 AGGAACAGGAAATCGCGAGG 60.108 55.000 16.66 2.03 0.00 4.63
1156 1208 4.398988 CCAGCAATCCAACAGTAGCATTAA 59.601 41.667 0.00 0.00 0.00 1.40
1229 1281 0.322098 TGACACCCTATTGGCGGTTG 60.322 55.000 0.00 0.00 37.83 3.77
1310 1362 0.823356 GGCAGCTCAGTCCAAAACCA 60.823 55.000 0.00 0.00 0.00 3.67
1353 1453 1.541233 CGAGGGCAGTTCACTGAAACT 60.541 52.381 11.29 4.87 46.59 2.66
1432 1545 2.576191 TCAAGACAACAGGGGATAAGGG 59.424 50.000 0.00 0.00 0.00 3.95
1582 1716 1.241165 TGGAGCTGCACAAGATGTTG 58.759 50.000 2.72 0.13 39.82 3.33
1672 1889 2.128771 ACCAATATCTTGCGCTGGTT 57.871 45.000 9.73 0.00 37.05 3.67
1710 1927 1.418637 ACCTTGAGTTTGCCGTTCCTA 59.581 47.619 0.00 0.00 0.00 2.94
1716 1933 1.879380 TGATCAACCTTGAGTTTGCCG 59.121 47.619 0.00 0.00 41.08 5.69
1720 1937 4.137543 GGACACTGATCAACCTTGAGTTT 58.862 43.478 0.00 0.00 41.08 2.66
1879 2096 3.193267 TGCAAATATGAACAAGACTGGGC 59.807 43.478 0.00 0.00 0.00 5.36
1917 2134 7.698130 GTGAAGTTACTGCATCATATTTCAACC 59.302 37.037 0.00 0.00 0.00 3.77
1993 2212 2.450476 AGTGGGCAATCAGGAACAATC 58.550 47.619 0.00 0.00 0.00 2.67
2033 2252 3.382048 ACGAATAGAACCGGAATAGGC 57.618 47.619 9.46 0.00 33.69 3.93
2284 2510 4.158579 GTCCTCTTTTCCATTCACATTCCC 59.841 45.833 0.00 0.00 0.00 3.97
2343 2569 0.745845 CAGCGGGCATAGCTTCTTGT 60.746 55.000 0.00 0.00 44.06 3.16
2366 2592 7.692460 TCAAGCAACATATCTTCACTTTCAT 57.308 32.000 0.00 0.00 0.00 2.57
2449 2675 4.807834 CAGGACATAGCACAAGATACACAG 59.192 45.833 0.00 0.00 0.00 3.66
2467 2693 3.202906 TGTTACAGCACTTCAACAGGAC 58.797 45.455 0.00 0.00 0.00 3.85
2723 2949 4.202295 CCTGAGCTAAGTATGCATCTTCCA 60.202 45.833 0.19 3.57 0.00 3.53
2905 3132 4.516323 GGCTTAATTCAACCATGCCATTT 58.484 39.130 0.00 0.00 38.79 2.32
2998 3942 4.520492 ACATCTTTCCTACAAGTTTGCCAG 59.480 41.667 0.00 0.00 0.00 4.85
3055 3999 1.818642 GATGCAGGTATGAGCCCATC 58.181 55.000 0.00 0.00 34.31 3.51
3106 4050 3.372060 GCAACTGCAAGACTTTGGTTAC 58.628 45.455 0.00 0.00 41.59 2.50
3190 4134 8.396272 AGCCACTAAAATGCTTAGGTATATTG 57.604 34.615 0.00 0.00 29.17 1.90
3234 4273 8.668353 CAAGATAAACTAGCTGCATTTACTCAA 58.332 33.333 1.02 0.00 0.00 3.02
3283 4323 4.499183 AGCAACAAGAGTAGCAGTACATC 58.501 43.478 0.00 0.00 0.00 3.06
3363 4403 4.022242 GCTCAGTACTACTTCAGGTTCACA 60.022 45.833 0.00 0.00 0.00 3.58
3483 4525 5.923733 TTGCCAAAAAGAGTAGGTGAAAA 57.076 34.783 0.00 0.00 0.00 2.29
3488 4530 4.793201 AGTCTTTGCCAAAAAGAGTAGGT 58.207 39.130 6.41 0.00 37.95 3.08
3554 4596 0.685097 TGGACACCAGACCTTAGCAC 59.315 55.000 0.00 0.00 0.00 4.40
3774 4825 1.961793 TATGGACATTAGCCAACCGC 58.038 50.000 0.00 0.00 39.21 5.68
3846 4897 1.344114 AGCGCATTCAACCCAAACATT 59.656 42.857 11.47 0.00 0.00 2.71
3915 4966 4.622740 GGTTGTCATCAGCTTTATTGCAAC 59.377 41.667 0.00 0.00 34.68 4.17
3935 4986 9.479549 AAAACCTTCTATGTTGATCATATGGTT 57.520 29.630 2.13 2.28 42.03 3.67
4023 5075 3.660970 TTGGCCACCTCAGCATATAAA 57.339 42.857 3.88 0.00 0.00 1.40
4074 5126 1.278127 TCTACAAAGGTAGGCAGGCAC 59.722 52.381 0.00 0.00 45.76 5.01
4169 5221 2.506444 TGCTGATCAATGCACTGACAA 58.494 42.857 0.00 0.00 33.94 3.18
4171 5223 2.681344 TCATGCTGATCAATGCACTGAC 59.319 45.455 11.45 0.00 42.26 3.51
4198 5250 5.075493 AGAGTCCACATGAAAAAGAGCATT 58.925 37.500 0.00 0.00 0.00 3.56
4238 5290 9.730705 AGACTGAAATGAAGAAATCAGATAACA 57.269 29.630 8.48 0.00 42.53 2.41
4241 5293 9.948964 TGAAGACTGAAATGAAGAAATCAGATA 57.051 29.630 8.48 0.00 42.53 1.98
4248 5300 6.603201 ACCACTTGAAGACTGAAATGAAGAAA 59.397 34.615 0.00 0.00 0.00 2.52
4297 5349 6.475727 ACACGACACTATCATTGTATAAGCAC 59.524 38.462 0.00 0.00 0.00 4.40
4365 5417 2.489329 GCAGCTTGATAGGAAACAGCAA 59.511 45.455 0.00 0.00 0.00 3.91
4447 5499 5.633830 ACAGAAAATTATGTCACTGGCAG 57.366 39.130 14.16 14.16 0.00 4.85
4493 5546 0.813184 AACATGCCATGCCTTCTTCG 59.187 50.000 4.17 0.00 0.00 3.79
4500 5553 2.389962 AAACATCAACATGCCATGCC 57.610 45.000 4.17 0.00 32.57 4.40
4515 5568 2.101249 CCAGCTGCTTCCTTTGAAAACA 59.899 45.455 8.66 0.00 0.00 2.83
4516 5569 2.546584 CCCAGCTGCTTCCTTTGAAAAC 60.547 50.000 8.66 0.00 0.00 2.43
4518 5571 1.133513 TCCCAGCTGCTTCCTTTGAAA 60.134 47.619 8.66 0.00 0.00 2.69
4519 5572 0.478072 TCCCAGCTGCTTCCTTTGAA 59.522 50.000 8.66 0.00 0.00 2.69
4520 5573 0.478072 TTCCCAGCTGCTTCCTTTGA 59.522 50.000 8.66 0.00 0.00 2.69
4521 5574 1.271656 CTTTCCCAGCTGCTTCCTTTG 59.728 52.381 8.66 0.00 0.00 2.77
4522 5575 1.145738 TCTTTCCCAGCTGCTTCCTTT 59.854 47.619 8.66 0.00 0.00 3.11
4523 5576 0.773644 TCTTTCCCAGCTGCTTCCTT 59.226 50.000 8.66 0.00 0.00 3.36
4524 5577 0.773644 TTCTTTCCCAGCTGCTTCCT 59.226 50.000 8.66 0.00 0.00 3.36
4526 5579 1.809547 GACTTCTTTCCCAGCTGCTTC 59.190 52.381 8.66 0.00 0.00 3.86
4527 5580 1.423161 AGACTTCTTTCCCAGCTGCTT 59.577 47.619 8.66 0.00 0.00 3.91
4528 5581 1.063183 AGACTTCTTTCCCAGCTGCT 58.937 50.000 8.66 0.00 0.00 4.24
4529 5582 1.163554 CAGACTTCTTTCCCAGCTGC 58.836 55.000 8.66 0.00 0.00 5.25
4530 5583 2.224378 TGTCAGACTTCTTTCCCAGCTG 60.224 50.000 6.78 6.78 0.00 4.24
4531 5584 2.050144 TGTCAGACTTCTTTCCCAGCT 58.950 47.619 1.31 0.00 0.00 4.24
4534 5587 4.565652 GGCTATTGTCAGACTTCTTTCCCA 60.566 45.833 1.31 0.00 0.00 4.37
4535 5588 3.942115 GGCTATTGTCAGACTTCTTTCCC 59.058 47.826 1.31 0.00 0.00 3.97
4537 5590 6.749923 AATGGCTATTGTCAGACTTCTTTC 57.250 37.500 1.31 0.00 0.00 2.62
4538 5591 6.716628 TGAAATGGCTATTGTCAGACTTCTTT 59.283 34.615 1.31 0.00 0.00 2.52
4583 7678 7.844674 CCATTGATTATATGGACGAGGATTCGA 60.845 40.741 3.74 0.00 45.55 3.71
4835 8272 3.611766 AACATCTCCTCCCACTAAACG 57.388 47.619 0.00 0.00 0.00 3.60
4866 8303 4.148696 CCGACACAGCATTTCAAAATTGAC 59.851 41.667 0.00 0.00 36.83 3.18
4874 8311 1.675714 CCTAGCCGACACAGCATTTCA 60.676 52.381 0.00 0.00 0.00 2.69
4875 8312 1.009829 CCTAGCCGACACAGCATTTC 58.990 55.000 0.00 0.00 0.00 2.17
4881 8318 1.264557 CGAGATACCTAGCCGACACAG 59.735 57.143 0.00 0.00 0.00 3.66
4883 8320 1.590932 TCGAGATACCTAGCCGACAC 58.409 55.000 0.00 0.00 0.00 3.67
4892 8329 0.752009 TGAGCGCCTTCGAGATACCT 60.752 55.000 2.29 0.00 38.10 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.