Multiple sequence alignment - TraesCS1B01G269700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G269700 chr1B 100.000 4502 0 0 1 4502 474263228 474258727 0.000000e+00 8314
1 TraesCS1B01G269700 chr1B 94.788 307 15 1 3661 3966 399623248 399622942 1.130000e-130 477
2 TraesCS1B01G269700 chr1D 95.729 4121 142 19 3 4114 351918718 351914623 0.000000e+00 6604
3 TraesCS1B01G269700 chr1D 95.389 4121 149 18 3 4114 351546022 351541934 0.000000e+00 6519
4 TraesCS1B01G269700 chr1D 91.603 393 23 2 4120 4502 351541957 351541565 6.630000e-148 534
5 TraesCS1B01G269700 chr1A 94.855 3596 133 25 641 4229 452297166 452293616 0.000000e+00 5568
6 TraesCS1B01G269700 chr1A 94.006 3437 135 22 1083 4500 452455088 452451704 0.000000e+00 5140
7 TraesCS1B01G269700 chr1A 96.720 1006 28 4 80 1084 452456251 452455250 0.000000e+00 1670
8 TraesCS1B01G269700 chr1A 96.842 475 12 1 3 477 452297628 452297157 0.000000e+00 791
9 TraesCS1B01G269700 chr1A 96.250 80 3 0 3 82 452456413 452456334 1.020000e-26 132
10 TraesCS1B01G269700 chr3B 95.752 306 12 1 3661 3966 511819252 511818948 4.050000e-135 492
11 TraesCS1B01G269700 chr2B 94.463 307 16 1 3661 3966 535564908 535565214 5.270000e-129 472
12 TraesCS1B01G269700 chr2B 76.331 338 67 8 522 857 347078102 347077776 7.750000e-38 169
13 TraesCS1B01G269700 chr2D 77.160 324 63 6 535 857 245379167 245379480 1.290000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G269700 chr1B 474258727 474263228 4501 True 8314.0 8314 100.000000 1 4502 1 chr1B.!!$R2 4501
1 TraesCS1B01G269700 chr1D 351914623 351918718 4095 True 6604.0 6604 95.729000 3 4114 1 chr1D.!!$R1 4111
2 TraesCS1B01G269700 chr1D 351541565 351546022 4457 True 3526.5 6519 93.496000 3 4502 2 chr1D.!!$R2 4499
3 TraesCS1B01G269700 chr1A 452293616 452297628 4012 True 3179.5 5568 95.848500 3 4229 2 chr1A.!!$R1 4226
4 TraesCS1B01G269700 chr1A 452451704 452456413 4709 True 2314.0 5140 95.658667 3 4500 3 chr1A.!!$R2 4497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1199 1.135527 TCTTATGCTGTTACGACGGGG 59.864 52.381 0.0 0.0 32.54 5.73 F
1662 2090 0.256752 TGGCTCATTCCACCTGGATG 59.743 55.000 0.0 0.0 44.98 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2696 1.520120 CTGCGGTCATCGTCTGCAT 60.520 57.895 0.0 0.0 44.52 3.96 R
3508 3940 0.250513 CCTTCTTCGAGTGGGGGAAG 59.749 60.000 0.0 0.0 40.74 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
368 457 9.436957 GAGGTATACATGAACAAGAGAAAAGAA 57.563 33.333 5.01 0.00 0.00 2.52
415 504 2.176792 GCGCTGTTAACTGCTGCC 59.823 61.111 27.94 16.04 38.46 4.85
588 677 4.870021 AAATCAGAGGGCCTTAACATCT 57.130 40.909 7.89 0.00 0.00 2.90
651 912 7.537715 TCATGATGCAAATAACTTGTGTTAGG 58.462 34.615 0.00 0.00 41.33 2.69
669 930 6.019881 GTGTTAGGCATTCTTGTTTTGTGTTC 60.020 38.462 0.00 0.00 0.00 3.18
671 932 4.685924 AGGCATTCTTGTTTTGTGTTCAG 58.314 39.130 0.00 0.00 0.00 3.02
690 951 9.899226 GTGTTCAGTTTTATGCTTTATTCTTCT 57.101 29.630 0.00 0.00 0.00 2.85
738 999 7.410120 TTGAATTGTGAGACTAGCATCTAGA 57.590 36.000 7.77 0.00 0.00 2.43
890 1153 6.839124 AATATTGCTTGTTCCATCTTGACA 57.161 33.333 0.00 0.00 0.00 3.58
924 1187 6.356556 TGTGCCTATATGTGTTTCTTATGCT 58.643 36.000 0.00 0.00 0.00 3.79
935 1198 2.572191 TCTTATGCTGTTACGACGGG 57.428 50.000 0.00 0.00 32.54 5.28
936 1199 1.135527 TCTTATGCTGTTACGACGGGG 59.864 52.381 0.00 0.00 32.54 5.73
960 1223 3.916761 ACAATGTGCCTAATTTGCTGTG 58.083 40.909 0.00 0.00 0.00 3.66
1202 1628 9.950680 AATATTAATGTGCAATTAACTTCCTCG 57.049 29.630 12.97 0.00 0.00 4.63
1219 1645 8.349568 ACTTCCTCGCTAATATCACATATACA 57.650 34.615 0.00 0.00 0.00 2.29
1495 1923 4.308458 CGGTGGCCGTGACAGGAA 62.308 66.667 0.00 0.00 42.73 3.36
1498 1926 1.515521 GGTGGCCGTGACAGGAAAAG 61.516 60.000 0.00 0.00 0.00 2.27
1594 2022 1.079819 TCTCTCGCTTTGGCTTCGG 60.080 57.895 0.00 0.00 36.09 4.30
1662 2090 0.256752 TGGCTCATTCCACCTGGATG 59.743 55.000 0.00 0.00 44.98 3.51
1722 2150 9.599866 TCATTTCACTAGTCTATACCAACAATG 57.400 33.333 0.00 0.00 0.00 2.82
1790 2219 6.215845 CAATTAACCTTTTCTGGGTGTTCAG 58.784 40.000 0.00 0.00 37.13 3.02
1801 2230 1.615392 GGGTGTTCAGCAGAAATGCTT 59.385 47.619 0.00 0.00 43.52 3.91
2027 2457 6.883744 TCTTGTATCACATTACATGCAGGTA 58.116 36.000 7.21 7.21 32.39 3.08
2031 2461 3.780902 TCACATTACATGCAGGTACTCG 58.219 45.455 11.37 5.17 34.60 4.18
2094 2524 6.920817 ACGAAGATATGTAAGTCTGTTGTGA 58.079 36.000 0.00 0.00 0.00 3.58
2266 2696 4.518590 TGATTTCGCTTCAGGAAATGACAA 59.481 37.500 4.65 0.00 42.48 3.18
2615 3045 6.725364 AGAATATGTCACTGTGGAAGGAAAT 58.275 36.000 8.11 0.00 0.00 2.17
2677 3107 9.321562 GGAGAAACTTAATATTCGTGGATTGTA 57.678 33.333 0.00 0.00 0.00 2.41
3159 3589 7.519328 GCGATTTGTCAAACTAAAGGTACAGAA 60.519 37.037 0.00 0.00 0.00 3.02
3350 3781 2.029290 TGTTCGACTTTACTGGCTCCTC 60.029 50.000 0.00 0.00 0.00 3.71
3430 3861 3.253432 GGGAATAATCGACAAGGGATTGC 59.747 47.826 0.00 0.00 35.78 3.56
3476 3907 3.597255 TGAAGCTGAGAAGAGCATCAAG 58.403 45.455 0.00 0.00 42.19 3.02
3499 3931 7.909485 AGGGATGCAGAAATATTGATTCTTT 57.091 32.000 0.00 0.00 34.99 2.52
3508 3940 7.222224 CAGAAATATTGATTCTTTGAGGCTTGC 59.778 37.037 0.00 0.00 34.99 4.01
3519 3951 2.361737 GGCTTGCTTCCCCCACTC 60.362 66.667 0.00 0.00 0.00 3.51
3523 3955 0.674895 CTTGCTTCCCCCACTCGAAG 60.675 60.000 0.00 0.00 38.81 3.79
3533 3965 0.318441 CCACTCGAAGAAGGTGCAGA 59.682 55.000 0.00 0.00 34.09 4.26
3537 3969 3.093057 ACTCGAAGAAGGTGCAGACTAT 58.907 45.455 0.00 0.00 34.09 2.12
3733 4165 8.725148 GGGTCATATCTGAAATTTAGTGCTATG 58.275 37.037 0.00 0.00 31.85 2.23
3734 4166 8.725148 GGTCATATCTGAAATTTAGTGCTATGG 58.275 37.037 0.00 0.00 31.85 2.74
3735 4167 8.233190 GTCATATCTGAAATTTAGTGCTATGGC 58.767 37.037 0.00 0.00 34.17 4.40
3736 4168 8.159447 TCATATCTGAAATTTAGTGCTATGGCT 58.841 33.333 1.68 0.00 39.59 4.75
3737 4169 8.790718 CATATCTGAAATTTAGTGCTATGGCTT 58.209 33.333 1.68 0.00 39.59 4.35
3738 4170 6.441093 TCTGAAATTTAGTGCTATGGCTTG 57.559 37.500 1.68 0.00 39.59 4.01
3739 4171 6.179756 TCTGAAATTTAGTGCTATGGCTTGA 58.820 36.000 1.68 0.00 39.59 3.02
3740 4172 6.830324 TCTGAAATTTAGTGCTATGGCTTGAT 59.170 34.615 1.68 0.00 39.59 2.57
3741 4173 7.012704 TCTGAAATTTAGTGCTATGGCTTGATC 59.987 37.037 1.68 0.00 39.59 2.92
3742 4174 6.602803 TGAAATTTAGTGCTATGGCTTGATCA 59.397 34.615 1.68 0.00 39.59 2.92
3743 4175 6.630444 AATTTAGTGCTATGGCTTGATCAG 57.370 37.500 1.68 0.00 39.59 2.90
3757 4189 5.860716 GGCTTGATCAGTCAATTTCAGTTTC 59.139 40.000 0.00 0.00 43.08 2.78
3766 4200 7.556275 TCAGTCAATTTCAGTTTCCTTAGTTGT 59.444 33.333 0.00 0.00 0.00 3.32
3785 4219 7.275888 AGTTGTCTTTGAGATAACATGCAAA 57.724 32.000 16.39 0.00 45.24 3.68
3898 4347 0.606673 GGTCTTGGGCAGGTCAACTC 60.607 60.000 0.00 0.00 0.00 3.01
3974 4423 4.342862 TCTCTGAAGGAACAAGTCAAGG 57.657 45.455 0.00 0.00 0.00 3.61
3982 4431 1.273327 GAACAAGTCAAGGCCATTGGG 59.727 52.381 5.01 1.26 39.54 4.12
4050 4499 1.148310 CTCGTTTGGTGCGATCTTGT 58.852 50.000 0.00 0.00 37.74 3.16
4077 4526 3.499918 CACAAGCTCTGAAGTTTAGGGTG 59.500 47.826 0.00 0.00 0.00 4.61
4105 4554 9.212593 ACAAGCATAAGTTATCCCCATAATTTT 57.787 29.630 0.00 0.00 29.69 1.82
4127 4576 3.426787 TTTTGAACGAGCTTATCCCCA 57.573 42.857 0.00 0.00 0.00 4.96
4128 4577 3.644966 TTTGAACGAGCTTATCCCCAT 57.355 42.857 0.00 0.00 0.00 4.00
4129 4578 4.764050 TTTGAACGAGCTTATCCCCATA 57.236 40.909 0.00 0.00 0.00 2.74
4130 4579 4.764050 TTGAACGAGCTTATCCCCATAA 57.236 40.909 0.00 0.00 0.00 1.90
4131 4580 4.974645 TGAACGAGCTTATCCCCATAAT 57.025 40.909 0.00 0.00 0.00 1.28
4132 4581 5.304686 TGAACGAGCTTATCCCCATAATT 57.695 39.130 0.00 0.00 0.00 1.40
4133 4582 5.690865 TGAACGAGCTTATCCCCATAATTT 58.309 37.500 0.00 0.00 0.00 1.82
4134 4583 5.530915 TGAACGAGCTTATCCCCATAATTTG 59.469 40.000 0.00 0.00 0.00 2.32
4135 4584 5.304686 ACGAGCTTATCCCCATAATTTGA 57.695 39.130 0.00 0.00 0.00 2.69
4136 4585 5.880901 ACGAGCTTATCCCCATAATTTGAT 58.119 37.500 0.00 0.00 0.00 2.57
4214 4664 6.924111 ACTTGTTGTGTCAAAGTTCAGAAAT 58.076 32.000 0.00 0.00 0.00 2.17
4256 4706 4.640805 TTGATCTGCGAAAACGTCTTAC 57.359 40.909 0.00 0.00 0.00 2.34
4339 4789 5.220340 CGCCATTTGAGAATGCAGAAATTTC 60.220 40.000 10.33 10.33 41.06 2.17
4358 4808 0.460284 CCACCTGACGCACCACTATC 60.460 60.000 0.00 0.00 0.00 2.08
4437 4896 7.032580 TGTCAAGTTCAGTTTGTTTACATTGG 58.967 34.615 0.00 0.00 0.00 3.16
4438 4897 6.475402 GTCAAGTTCAGTTTGTTTACATTGGG 59.525 38.462 0.00 0.00 0.00 4.12
4451 4910 1.280710 ACATTGGGTCTGCGGTAATGA 59.719 47.619 15.89 0.00 33.98 2.57
4465 4924 3.017442 GGTAATGAGCAAAAGGAGGACC 58.983 50.000 0.00 0.00 0.00 4.46
4469 4928 1.988107 TGAGCAAAAGGAGGACCATCT 59.012 47.619 0.00 0.00 38.94 2.90
4471 4930 0.813821 GCAAAAGGAGGACCATCTGC 59.186 55.000 0.00 0.00 38.94 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.981256 ACACTTAACCCCAACAGCTG 58.019 50.000 13.48 13.48 0.00 4.24
1 2 2.306847 CAACACTTAACCCCAACAGCT 58.693 47.619 0.00 0.00 0.00 4.24
181 267 6.308371 TCGGTGTTTCCAGAACTAATTTTC 57.692 37.500 0.00 0.00 35.57 2.29
368 457 7.416438 GCATTTCTCCATTGATCATTGTTCTCT 60.416 37.037 14.72 0.00 0.00 3.10
415 504 9.891828 TGCAATTAAAACTTCAGTGTTATAGTG 57.108 29.630 0.00 0.00 28.70 2.74
588 677 3.132111 TGCGACTTGAGATACTATGGCAA 59.868 43.478 0.00 0.00 0.00 4.52
651 912 6.407475 AAACTGAACACAAAACAAGAATGC 57.593 33.333 0.00 0.00 0.00 3.56
669 930 9.907576 CGAGTAGAAGAATAAAGCATAAAACTG 57.092 33.333 0.00 0.00 0.00 3.16
671 932 8.604890 AGCGAGTAGAAGAATAAAGCATAAAAC 58.395 33.333 0.00 0.00 0.00 2.43
716 977 7.325821 CGATTCTAGATGCTAGTCTCACAATTC 59.674 40.741 0.00 0.00 0.00 2.17
726 987 6.926272 GGTCAAAATCGATTCTAGATGCTAGT 59.074 38.462 11.83 0.00 0.00 2.57
738 999 8.143835 ACAAAATTTCAGAGGTCAAAATCGATT 58.856 29.630 4.39 4.39 0.00 3.34
777 1038 0.961019 TTGCACTAAAAGCAGCTGGG 59.039 50.000 17.12 0.00 43.75 4.45
890 1153 9.627123 AAACACATATAGGCACAACATAATAGT 57.373 29.630 0.00 0.00 0.00 2.12
924 1187 0.680618 ATTGTCACCCCGTCGTAACA 59.319 50.000 0.00 0.00 0.00 2.41
935 1198 3.056607 AGCAAATTAGGCACATTGTCACC 60.057 43.478 5.01 0.00 0.00 4.02
936 1199 3.922240 CAGCAAATTAGGCACATTGTCAC 59.078 43.478 5.01 0.00 0.00 3.67
960 1223 1.346197 CGATCACGCTGCATGTCAC 59.654 57.895 0.00 0.00 0.00 3.67
1195 1621 8.244113 TGTGTATATGTGATATTAGCGAGGAAG 58.756 37.037 0.00 0.00 0.00 3.46
1297 1724 1.141234 GGATCCGGTCGAACCAGAC 59.859 63.158 0.00 0.00 38.47 3.51
1382 1810 3.838271 GGCGAGTGGATGCCGAGA 61.838 66.667 0.00 0.00 42.22 4.04
1481 1909 1.228124 CCTTTTCCTGTCACGGCCA 60.228 57.895 2.24 0.00 0.00 5.36
1495 1923 1.550976 TGTTGGTTTTCGGTTGCCTTT 59.449 42.857 0.00 0.00 0.00 3.11
1498 1926 1.135333 TCTTGTTGGTTTTCGGTTGCC 59.865 47.619 0.00 0.00 0.00 4.52
1594 2022 5.783111 TGTTTTACCTACCTAAAGACGGAC 58.217 41.667 0.00 0.00 0.00 4.79
1624 2052 2.288395 CCATTGAAGTTGCCACTGTTCC 60.288 50.000 0.00 0.00 31.60 3.62
1662 2090 6.309737 ACGATTCTCGGTTAAACACTTCATAC 59.690 38.462 1.29 0.00 45.59 2.39
1705 2133 4.141574 GCACCCCATTGTTGGTATAGACTA 60.142 45.833 0.00 0.00 41.91 2.59
1801 2230 7.012610 CACATGACAATTCATAGTAATCAGGCA 59.987 37.037 0.00 0.00 40.79 4.75
2027 2457 3.738830 TGGTACACTTTTACTGCGAGT 57.261 42.857 0.00 0.00 0.00 4.18
2031 2461 5.458015 GTCCATTTGGTACACTTTTACTGC 58.542 41.667 0.00 0.00 39.29 4.40
2094 2524 7.235193 AGGTAGAGTGCTGATGATATCTTCATT 59.765 37.037 18.63 7.81 45.29 2.57
2266 2696 1.520120 CTGCGGTCATCGTCTGCAT 60.520 57.895 0.00 0.00 44.52 3.96
2615 3045 6.131961 ACTCGCTACTAAATCCCCTAAACTA 58.868 40.000 0.00 0.00 0.00 2.24
2790 3220 5.034852 TCTGTGTCAGAATTCAGTTCCAA 57.965 39.130 8.44 0.00 37.57 3.53
2970 3400 4.785575 GCAATAGGCCCCCAAACT 57.214 55.556 0.00 0.00 36.11 2.66
3159 3589 5.724328 TGTAGCAAGTCGAAGATTTCATCT 58.276 37.500 0.00 0.00 40.67 2.90
3350 3781 1.005340 CAAGAAGCTTAGCTCCGCAG 58.995 55.000 7.36 0.00 38.25 5.18
3361 3792 8.281212 TCTTCAAGTAAAAGTTTCAAGAAGCT 57.719 30.769 0.00 0.00 33.15 3.74
3430 3861 8.834465 CAGGAGATATTTTAGGACATTTCTGTG 58.166 37.037 0.00 0.00 35.14 3.66
3476 3907 7.719483 TCAAAGAATCAATATTTCTGCATCCC 58.281 34.615 0.00 0.00 33.79 3.85
3499 3931 2.858476 TGGGGGAAGCAAGCCTCA 60.858 61.111 0.00 0.00 0.00 3.86
3508 3940 0.250513 CCTTCTTCGAGTGGGGGAAG 59.749 60.000 0.00 0.00 40.74 3.46
3519 3951 3.238108 ACATAGTCTGCACCTTCTTCG 57.762 47.619 0.00 0.00 0.00 3.79
3523 3955 5.948992 AGAAAAACATAGTCTGCACCTTC 57.051 39.130 0.00 0.00 0.00 3.46
3565 3997 9.485206 GTAAGTAACTGAACAGGTGAAGAAATA 57.515 33.333 2.37 0.00 0.00 1.40
3695 4127 6.830912 TCAGATATGACCCAAAATGGTAGAG 58.169 40.000 0.00 0.00 39.24 2.43
3733 4165 9.134268 AGGAAACTGAAATTGACTGATCAAGCC 62.134 40.741 0.00 0.00 43.93 4.35
3734 4166 6.294397 AGGAAACTGAAATTGACTGATCAAGC 60.294 38.462 0.00 0.00 43.93 4.01
3735 4167 7.211966 AGGAAACTGAAATTGACTGATCAAG 57.788 36.000 0.00 0.00 43.93 3.02
3736 4168 7.587037 AAGGAAACTGAAATTGACTGATCAA 57.413 32.000 0.00 0.00 45.12 2.57
3737 4169 7.939039 ACTAAGGAAACTGAAATTGACTGATCA 59.061 33.333 0.00 0.00 42.68 2.92
3738 4170 8.329203 ACTAAGGAAACTGAAATTGACTGATC 57.671 34.615 0.00 0.00 42.68 2.92
3739 4171 8.571336 CAACTAAGGAAACTGAAATTGACTGAT 58.429 33.333 0.00 0.00 42.68 2.90
3740 4172 7.556275 ACAACTAAGGAAACTGAAATTGACTGA 59.444 33.333 0.00 0.00 42.68 3.41
3741 4173 7.707104 ACAACTAAGGAAACTGAAATTGACTG 58.293 34.615 0.00 0.00 42.68 3.51
3742 4174 7.775561 AGACAACTAAGGAAACTGAAATTGACT 59.224 33.333 0.00 0.00 42.68 3.41
3743 4175 7.931275 AGACAACTAAGGAAACTGAAATTGAC 58.069 34.615 0.00 0.00 42.68 3.18
3757 4189 7.119699 TGCATGTTATCTCAAAGACAACTAAGG 59.880 37.037 0.00 0.00 33.06 2.69
3766 4200 6.475504 TCTCCTTTGCATGTTATCTCAAAGA 58.524 36.000 17.59 7.49 44.76 2.52
3785 4219 3.055530 ACGTTCATGCTCAGAATTCTCCT 60.056 43.478 4.57 0.00 0.00 3.69
3848 4294 7.382488 CCGTATTCATAATACTGAACTGGAGTG 59.618 40.741 7.88 0.00 41.22 3.51
3898 4347 3.551846 AGATAAAACATTAGGGTGGCGG 58.448 45.455 0.00 0.00 0.00 6.13
3974 4423 0.182775 ATACCGTTCCTCCCAATGGC 59.817 55.000 0.00 0.00 36.03 4.40
3982 4431 2.673368 CACAAGCTTGATACCGTTCCTC 59.327 50.000 32.50 0.00 0.00 3.71
4050 4499 3.492102 AACTTCAGAGCTTGTGCCTTA 57.508 42.857 0.00 0.00 40.80 2.69
4077 4526 8.863872 ATTATGGGGATAACTTATGCTTGTAC 57.136 34.615 0.85 0.00 0.00 2.90
4108 4557 3.644966 ATGGGGATAAGCTCGTTCAAA 57.355 42.857 0.00 0.00 0.00 2.69
4109 4558 4.764050 TTATGGGGATAAGCTCGTTCAA 57.236 40.909 0.00 0.00 0.00 2.69
4110 4559 4.974645 ATTATGGGGATAAGCTCGTTCA 57.025 40.909 0.00 0.00 0.00 3.18
4111 4560 5.763204 TCAAATTATGGGGATAAGCTCGTTC 59.237 40.000 0.00 0.00 0.00 3.95
4112 4561 5.690865 TCAAATTATGGGGATAAGCTCGTT 58.309 37.500 0.00 0.00 0.00 3.85
4113 4562 5.304686 TCAAATTATGGGGATAAGCTCGT 57.695 39.130 0.00 0.00 0.00 4.18
4114 4563 5.707298 ACATCAAATTATGGGGATAAGCTCG 59.293 40.000 0.00 0.00 0.00 5.03
4115 4564 7.231317 TCAACATCAAATTATGGGGATAAGCTC 59.769 37.037 0.00 0.00 0.00 4.09
4116 4565 7.068702 TCAACATCAAATTATGGGGATAAGCT 58.931 34.615 0.00 0.00 0.00 3.74
4117 4566 7.288810 TCAACATCAAATTATGGGGATAAGC 57.711 36.000 0.00 0.00 0.00 3.09
4118 4567 8.917088 ACTTCAACATCAAATTATGGGGATAAG 58.083 33.333 0.00 0.00 0.00 1.73
4119 4568 8.837099 ACTTCAACATCAAATTATGGGGATAA 57.163 30.769 0.00 0.00 0.00 1.75
4120 4569 8.837099 AACTTCAACATCAAATTATGGGGATA 57.163 30.769 0.00 0.00 0.00 2.59
4121 4570 7.738437 AACTTCAACATCAAATTATGGGGAT 57.262 32.000 0.00 0.00 0.00 3.85
4122 4571 7.123547 GGTAACTTCAACATCAAATTATGGGGA 59.876 37.037 0.00 0.00 0.00 4.81
4123 4572 7.264947 GGTAACTTCAACATCAAATTATGGGG 58.735 38.462 0.00 0.00 0.00 4.96
4124 4573 7.264947 GGGTAACTTCAACATCAAATTATGGG 58.735 38.462 0.00 0.00 0.00 4.00
4125 4574 7.264947 GGGGTAACTTCAACATCAAATTATGG 58.735 38.462 0.00 0.00 0.00 2.74
4126 4575 6.972328 CGGGGTAACTTCAACATCAAATTATG 59.028 38.462 0.00 0.00 0.00 1.90
4127 4576 6.661805 ACGGGGTAACTTCAACATCAAATTAT 59.338 34.615 0.00 0.00 0.00 1.28
4128 4577 6.005198 ACGGGGTAACTTCAACATCAAATTA 58.995 36.000 0.00 0.00 0.00 1.40
4129 4578 4.830600 ACGGGGTAACTTCAACATCAAATT 59.169 37.500 0.00 0.00 0.00 1.82
4130 4579 4.217550 CACGGGGTAACTTCAACATCAAAT 59.782 41.667 0.00 0.00 0.00 2.32
4131 4580 3.566322 CACGGGGTAACTTCAACATCAAA 59.434 43.478 0.00 0.00 0.00 2.69
4132 4581 3.142951 CACGGGGTAACTTCAACATCAA 58.857 45.455 0.00 0.00 0.00 2.57
4133 4582 2.105134 ACACGGGGTAACTTCAACATCA 59.895 45.455 0.00 0.00 0.00 3.07
4134 4583 2.774687 ACACGGGGTAACTTCAACATC 58.225 47.619 0.00 0.00 0.00 3.06
4135 4584 2.943036 ACACGGGGTAACTTCAACAT 57.057 45.000 0.00 0.00 0.00 2.71
4136 4585 2.563702 GAACACGGGGTAACTTCAACA 58.436 47.619 0.00 0.00 0.00 3.33
4214 4664 9.585099 GATCAATATGAACTGCCAAACATTTTA 57.415 29.630 0.00 0.00 0.00 1.52
4256 4706 5.934402 AGTACACCCTCTGGTACTAAATG 57.066 43.478 2.85 0.00 46.11 2.32
4339 4789 0.460284 GATAGTGGTGCGTCAGGTGG 60.460 60.000 0.00 0.00 0.00 4.61
4374 4824 5.048224 TGAAGAACTTCTAGTACGACCCAAG 60.048 44.000 14.31 0.00 40.14 3.61
4437 4896 1.448985 TTTGCTCATTACCGCAGACC 58.551 50.000 0.00 0.00 37.46 3.85
4438 4897 2.159517 CCTTTTGCTCATTACCGCAGAC 60.160 50.000 0.00 0.00 37.46 3.51
4451 4910 1.615384 GCAGATGGTCCTCCTTTTGCT 60.615 52.381 7.89 0.00 42.02 3.91
4465 4924 6.867662 AAAATATCTCGGGTTAAGCAGATG 57.132 37.500 14.53 7.49 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.