Multiple sequence alignment - TraesCS1B01G269100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G269100 chr1B 100.000 2904 0 0 1 2904 473287169 473284266 0.000000e+00 5363
1 TraesCS1B01G269100 chr1D 92.481 1955 79 34 991 2904 350654066 350652139 0.000000e+00 2734
2 TraesCS1B01G269100 chr1D 94.023 686 28 6 317 990 350654799 350654115 0.000000e+00 1027
3 TraesCS1B01G269100 chr1D 91.228 285 13 6 1 278 350663507 350663228 7.600000e-101 377
4 TraesCS1B01G269100 chr1A 91.827 1872 78 36 991 2817 451618966 451617125 0.000000e+00 2540
5 TraesCS1B01G269100 chr1A 88.541 1021 69 21 1 990 451620022 451619019 0.000000e+00 1194
6 TraesCS1B01G269100 chr1A 94.845 97 5 0 2808 2904 451616548 451616452 5.010000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G269100 chr1B 473284266 473287169 2903 True 5363.000000 5363 100.000000 1 2904 1 chr1B.!!$R1 2903
1 TraesCS1B01G269100 chr1D 350652139 350654799 2660 True 1880.500000 2734 93.252000 317 2904 2 chr1D.!!$R2 2587
2 TraesCS1B01G269100 chr1A 451616452 451620022 3570 True 1295.333333 2540 91.737667 1 2904 3 chr1A.!!$R1 2903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.179225 CGCGTCGGGTTTCATCTTTG 60.179 55.0 0.0 0.0 0.0 2.77 F
305 311 0.318441 TGACCAGGCTTTCTCACGAG 59.682 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1179 1272 2.038164 GACCTTCTTGTAGACGGGGTTT 59.962 50.000 4.51 0.0 37.91 3.27 R
2272 2389 1.739371 GCCAGAGTTACCCGCAGTTAG 60.739 57.143 0.00 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.241880 ACGACGAAAACACCGGCAG 61.242 57.895 0.00 0.00 34.04 4.85
49 50 3.969250 ATGGCGCGTCGGGTTTCAT 62.969 57.895 6.09 9.48 0.00 2.57
50 51 3.861263 GGCGCGTCGGGTTTCATC 61.861 66.667 8.43 0.00 0.00 2.92
54 55 0.179225 CGCGTCGGGTTTCATCTTTG 60.179 55.000 0.00 0.00 0.00 2.77
56 57 1.399727 GCGTCGGGTTTCATCTTTGTG 60.400 52.381 0.00 0.00 0.00 3.33
57 58 1.196808 CGTCGGGTTTCATCTTTGTGG 59.803 52.381 0.00 0.00 0.00 4.17
60 61 3.816523 GTCGGGTTTCATCTTTGTGGTTA 59.183 43.478 0.00 0.00 0.00 2.85
61 62 4.276431 GTCGGGTTTCATCTTTGTGGTTAA 59.724 41.667 0.00 0.00 0.00 2.01
62 63 4.888239 TCGGGTTTCATCTTTGTGGTTAAA 59.112 37.500 0.00 0.00 0.00 1.52
64 65 6.041069 TCGGGTTTCATCTTTGTGGTTAAATT 59.959 34.615 0.00 0.00 0.00 1.82
67 68 9.549078 GGGTTTCATCTTTGTGGTTAAATTAAA 57.451 29.630 0.00 0.00 0.00 1.52
101 103 4.805719 ACTGTGATACTATACGAACGACGA 59.194 41.667 0.00 0.00 45.77 4.20
110 112 5.925397 ACTATACGAACGACGATAGAGATGT 59.075 40.000 0.00 0.00 45.77 3.06
114 116 4.152045 ACGAACGACGATAGAGATGTATCC 59.848 45.833 0.00 0.00 45.77 2.59
115 117 4.435784 CGAACGACGATAGAGATGTATCCC 60.436 50.000 0.00 0.00 45.77 3.85
116 118 3.001414 ACGACGATAGAGATGTATCCCG 58.999 50.000 0.00 0.00 41.38 5.14
117 119 2.352034 CGACGATAGAGATGTATCCCGG 59.648 54.545 0.00 0.00 41.38 5.73
118 120 2.093106 ACGATAGAGATGTATCCCGGC 58.907 52.381 0.00 0.00 41.38 6.13
119 121 1.064208 CGATAGAGATGTATCCCGGCG 59.936 57.143 0.00 0.00 39.76 6.46
120 122 1.405821 GATAGAGATGTATCCCGGCGG 59.594 57.143 21.46 21.46 0.00 6.13
196 198 1.261619 GTGGTCTTCAGTCAAACGCAG 59.738 52.381 0.00 0.00 0.00 5.18
198 200 0.937304 GTCTTCAGTCAAACGCAGCA 59.063 50.000 0.00 0.00 0.00 4.41
261 266 3.620785 ATCGATCCAGGCTCGGGC 61.621 66.667 12.74 0.00 36.78 6.13
270 275 1.303309 CAGGCTCGGGCTTTCTTATG 58.697 55.000 7.48 0.00 35.88 1.90
272 277 2.116238 AGGCTCGGGCTTTCTTATGTA 58.884 47.619 7.48 0.00 33.67 2.29
274 279 3.054655 AGGCTCGGGCTTTCTTATGTAAA 60.055 43.478 7.48 0.00 33.67 2.01
305 311 0.318441 TGACCAGGCTTTCTCACGAG 59.682 55.000 0.00 0.00 0.00 4.18
313 319 1.004560 TTTCTCACGAGCTGCTGGG 60.005 57.895 16.10 6.21 0.00 4.45
329 335 3.009033 TGCTGGGCTTTGTCTACACTATT 59.991 43.478 0.00 0.00 0.00 1.73
335 341 5.467063 GGGCTTTGTCTACACTATTATCTGC 59.533 44.000 0.00 0.00 0.00 4.26
428 434 1.984570 CTCTCCACGGAGGCCAGAA 60.985 63.158 13.13 0.00 42.20 3.02
435 441 0.759436 ACGGAGGCCAGAATACCGAT 60.759 55.000 21.21 8.59 45.31 4.18
519 525 1.221466 CGTGCCTGCTTTTGACTCGA 61.221 55.000 0.00 0.00 0.00 4.04
560 566 3.333898 GAGCTGCGAGGCAAAAGCC 62.334 63.158 0.00 0.00 38.41 4.35
595 601 0.782384 GTTGTAACTGTCTCACCGCG 59.218 55.000 0.00 0.00 0.00 6.46
643 649 3.326747 CACCCCGTGAGAACTTCTTTAG 58.673 50.000 0.00 0.00 35.23 1.85
704 722 3.629142 ATTACTAGGCAGGTTCACACC 57.371 47.619 0.00 0.00 44.67 4.16
717 735 1.629043 TCACACCTCCCAGTGAGTAC 58.371 55.000 0.00 0.00 39.65 2.73
772 799 4.366684 CCTTGCCGGGGAAGCCTT 62.367 66.667 21.60 0.00 0.00 4.35
852 881 2.677289 CCCCAGCCAGCTGACATCT 61.677 63.158 21.01 3.56 46.30 2.90
1360 1453 2.369870 GGCGACGACAAGGTATGTG 58.630 57.895 0.00 0.00 44.12 3.21
1362 1455 0.736325 GCGACGACAAGGTATGTGCT 60.736 55.000 0.00 0.00 44.12 4.40
1363 1456 1.468565 GCGACGACAAGGTATGTGCTA 60.469 52.381 0.00 0.00 44.12 3.49
1365 1458 3.444916 CGACGACAAGGTATGTGCTAAT 58.555 45.455 0.00 0.00 44.12 1.73
1368 1461 3.932710 ACGACAAGGTATGTGCTAATGTG 59.067 43.478 0.00 0.00 44.12 3.21
1403 1503 3.704512 CTCGTGATGATTCTCTGTGGAG 58.295 50.000 0.00 0.00 40.73 3.86
1413 1513 2.259917 TCTCTGTGGAGAATGGCTGAA 58.740 47.619 0.00 0.00 44.62 3.02
1422 1522 3.438434 GGAGAATGGCTGAACTGTTTCTC 59.562 47.826 7.34 7.34 38.75 2.87
1441 1541 2.363406 GGAATGCAGCTTGGGCCT 60.363 61.111 4.53 0.00 39.73 5.19
1528 1628 4.519437 CTGGCGCTGATCGAGGCA 62.519 66.667 7.64 14.01 45.25 4.75
1534 1634 1.300080 GCTGATCGAGGCAGAGCTC 60.300 63.158 18.95 5.27 35.39 4.09
1690 1790 3.621805 TTCCCGCTCTTCCACGCA 61.622 61.111 0.00 0.00 0.00 5.24
1908 2013 1.441729 CCGTGGACATATGACCGCT 59.558 57.895 27.31 0.00 38.03 5.52
1945 2050 0.250793 ACTGTGGTTTGTGTCGGTCA 59.749 50.000 0.00 0.00 0.00 4.02
2059 2167 2.111999 TTAGTGGCGCAGTCTGGCTT 62.112 55.000 10.83 0.00 0.00 4.35
2071 2179 2.104281 AGTCTGGCTTAGGTGTCGTTTT 59.896 45.455 0.00 0.00 0.00 2.43
2114 2226 6.739900 TTTATTATGCGTTGTGTGTTTGTG 57.260 33.333 0.00 0.00 0.00 3.33
2181 2297 1.509644 AATGCACGTGTGTCTGGCAG 61.510 55.000 18.38 8.58 37.96 4.85
2186 2302 0.178068 ACGTGTGTCTGGCAGTTTCT 59.822 50.000 15.27 0.00 0.00 2.52
2269 2386 2.556189 TCATTGGTGCGCATTACAGTTT 59.444 40.909 15.91 0.10 0.00 2.66
2272 2389 3.006659 TGGTGCGCATTACAGTTTTTC 57.993 42.857 15.91 0.00 0.00 2.29
2323 2440 8.127954 TGGTATTACAGTTTAACAACGGTTTTC 58.872 33.333 0.00 0.00 41.09 2.29
2324 2441 8.127954 GGTATTACAGTTTAACAACGGTTTTCA 58.872 33.333 0.00 0.00 41.09 2.69
2373 2494 1.623811 TGCCAAGAGGGAGTGAAGTAC 59.376 52.381 0.00 0.00 40.01 2.73
2374 2495 1.623811 GCCAAGAGGGAGTGAAGTACA 59.376 52.381 0.00 0.00 40.01 2.90
2415 2538 5.714333 TGATTTATGCTAGTTCTGCCCAAAA 59.286 36.000 0.00 0.00 0.00 2.44
2432 2556 0.948678 AAATGCTGCGGTTAACGTGT 59.051 45.000 0.00 0.00 46.52 4.49
2467 2591 1.674359 CAGCGGCATGGTAACCATTA 58.326 50.000 1.45 0.00 42.23 1.90
2481 2605 6.481976 TGGTAACCATTAAATGCTACTGATCG 59.518 38.462 0.00 0.00 0.00 3.69
2501 2625 6.264518 TGATCGTATCAATACCTGCTTCTGTA 59.735 38.462 0.00 0.00 36.11 2.74
2502 2626 6.459670 TCGTATCAATACCTGCTTCTGTAA 57.540 37.500 0.00 0.00 0.00 2.41
2593 2717 0.322098 TCCACACCGGCCATTAACTG 60.322 55.000 0.00 0.00 33.14 3.16
2612 2736 4.133373 ATGCCCTGCGCCCAGAAT 62.133 61.111 4.18 0.00 41.77 2.40
2615 2739 4.113815 CCCTGCGCCCAGAATCCA 62.114 66.667 4.18 0.00 41.77 3.41
2616 2740 2.515523 CCTGCGCCCAGAATCCAG 60.516 66.667 4.18 0.00 41.77 3.86
2641 2765 1.718757 GCCATCATCGTGCCCAACTC 61.719 60.000 0.00 0.00 0.00 3.01
2659 2791 0.960364 TCCCGCTTGATGGTTTCAGC 60.960 55.000 0.00 0.00 35.27 4.26
2673 2805 4.473196 TGGTTTCAGCTAATCCCTATCACA 59.527 41.667 0.00 0.00 0.00 3.58
2724 2869 9.698309 TCCAAAATAAAATAATCTCGTTTTGCA 57.302 25.926 0.00 0.00 35.11 4.08
2726 2871 9.464248 CAAAATAAAATAATCTCGTTTTGCAGC 57.536 29.630 0.00 0.00 31.18 5.25
2781 2927 1.465689 CGCTGACGGCAATAAACCAAG 60.466 52.381 7.13 0.00 41.91 3.61
2846 3578 1.737236 GCAGATTTCATACGCACACCA 59.263 47.619 0.00 0.00 0.00 4.17
2853 3585 2.217750 TCATACGCACACCAATATGGC 58.782 47.619 0.00 0.00 42.67 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.234884 CTTCTGCCGGTGTTTTCGTC 59.765 55.000 1.90 0.00 0.00 4.20
12 13 1.082104 GCTTCTGCCGGTGTTTTCG 60.082 57.895 1.90 0.00 0.00 3.46
17 18 2.360350 CCATGCTTCTGCCGGTGT 60.360 61.111 1.90 0.00 38.71 4.16
74 75 7.007725 CGTCGTTCGTATAGTATCACAGTTTTT 59.992 37.037 0.00 0.00 34.52 1.94
77 78 5.291858 TCGTCGTTCGTATAGTATCACAGTT 59.708 40.000 0.00 0.00 40.80 3.16
78 79 4.805719 TCGTCGTTCGTATAGTATCACAGT 59.194 41.667 0.00 0.00 40.80 3.55
79 80 5.320607 TCGTCGTTCGTATAGTATCACAG 57.679 43.478 0.00 0.00 40.80 3.66
82 83 7.308435 TCTCTATCGTCGTTCGTATAGTATCA 58.692 38.462 0.00 0.00 40.80 2.15
83 84 7.733046 TCTCTATCGTCGTTCGTATAGTATC 57.267 40.000 0.00 0.00 40.80 2.24
84 85 7.758980 ACATCTCTATCGTCGTTCGTATAGTAT 59.241 37.037 0.00 0.00 40.80 2.12
85 86 7.087007 ACATCTCTATCGTCGTTCGTATAGTA 58.913 38.462 0.00 0.00 40.80 1.82
86 87 5.925397 ACATCTCTATCGTCGTTCGTATAGT 59.075 40.000 0.00 0.00 40.80 2.12
87 88 6.392353 ACATCTCTATCGTCGTTCGTATAG 57.608 41.667 0.00 0.00 40.80 1.31
88 89 7.221645 GGATACATCTCTATCGTCGTTCGTATA 59.778 40.741 0.00 0.00 40.80 1.47
101 103 1.475403 CCGCCGGGATACATCTCTAT 58.525 55.000 2.18 0.00 39.74 1.98
118 120 4.841861 TTATTGTCCCGCCGGCCG 62.842 66.667 23.46 21.04 0.00 6.13
119 121 1.826487 ATTTATTGTCCCGCCGGCC 60.826 57.895 23.46 7.25 0.00 6.13
120 122 1.358759 CATTTATTGTCCCGCCGGC 59.641 57.895 19.07 19.07 0.00 6.13
196 198 1.521681 CCGGAAAGGGATCTCGTGC 60.522 63.158 0.00 0.00 35.97 5.34
198 200 0.981943 AAACCGGAAAGGGATCTCGT 59.018 50.000 9.46 0.00 46.96 4.18
249 254 0.907704 TAAGAAAGCCCGAGCCTGGA 60.908 55.000 0.00 0.00 41.25 3.86
251 256 1.303309 CATAAGAAAGCCCGAGCCTG 58.697 55.000 0.00 0.00 41.25 4.85
270 275 5.151389 CCTGGTCAAAGCGTGTTTATTTAC 58.849 41.667 0.00 0.00 0.00 2.01
272 277 3.552068 GCCTGGTCAAAGCGTGTTTATTT 60.552 43.478 0.00 0.00 0.00 1.40
274 279 1.539827 GCCTGGTCAAAGCGTGTTTAT 59.460 47.619 0.00 0.00 0.00 1.40
305 311 0.606401 TGTAGACAAAGCCCAGCAGC 60.606 55.000 0.00 0.00 0.00 5.25
313 319 6.049149 TGGCAGATAATAGTGTAGACAAAGC 58.951 40.000 0.00 0.00 0.00 3.51
329 335 6.840527 TCAAGATGGTGAAATATGGCAGATA 58.159 36.000 0.00 0.00 0.00 1.98
335 341 5.301045 ACTGCATCAAGATGGTGAAATATGG 59.699 40.000 11.66 0.00 39.16 2.74
428 434 0.321671 CAATCCGGCCAGATCGGTAT 59.678 55.000 0.83 0.00 46.82 2.73
457 463 1.221840 CCCCAATACTGCTCGCTGT 59.778 57.895 6.66 6.66 0.00 4.40
495 501 1.082756 CAAAAGCAGGCACGTCGAC 60.083 57.895 5.18 5.18 0.00 4.20
560 566 1.000283 ACAACAGAGAAGTCTCCGCTG 60.000 52.381 4.67 0.00 43.88 5.18
595 601 3.329542 TTCATGGCGAGCTGGACCC 62.330 63.158 0.00 0.00 0.00 4.46
643 649 3.063045 GTGATTTGTTTATCCGGTCGGTC 59.937 47.826 9.36 0.00 36.47 4.79
690 696 3.161557 GGAGGTGTGAACCTGCCT 58.838 61.111 1.25 0.00 41.65 4.75
707 725 2.035449 TCGTGGACTTTGTACTCACTGG 59.965 50.000 0.00 0.00 0.00 4.00
717 735 1.284982 CTGGCTCGTCGTGGACTTTG 61.285 60.000 0.00 0.00 0.00 2.77
792 819 1.758906 TGTGTGTGGGTGGAGACGA 60.759 57.895 0.00 0.00 0.00 4.20
1011 1098 2.733593 GCGTCAACGTTCTCCGCT 60.734 61.111 21.60 0.00 41.06 5.52
1179 1272 2.038164 GACCTTCTTGTAGACGGGGTTT 59.962 50.000 4.51 0.00 37.91 3.27
1359 1452 3.124270 CGGGCGTGCACATTAGCA 61.124 61.111 18.64 0.00 43.35 3.49
1360 1453 4.536687 GCGGGCGTGCACATTAGC 62.537 66.667 18.64 11.80 34.15 3.09
1403 1503 3.190118 CCAGAGAAACAGTTCAGCCATTC 59.810 47.826 0.00 0.00 36.09 2.67
1413 1513 2.157738 GCTGCATTCCAGAGAAACAGT 58.842 47.619 0.00 0.00 44.64 3.55
1422 1522 2.718073 GGCCCAAGCTGCATTCCAG 61.718 63.158 1.02 0.00 44.67 3.86
1735 1835 4.779733 AGGCGGTCGATGGAGGGT 62.780 66.667 0.00 0.00 0.00 4.34
2075 2183 8.307483 CGCATAATAAATAGAGAGGAGAAAGGA 58.693 37.037 0.00 0.00 0.00 3.36
2076 2184 8.091449 ACGCATAATAAATAGAGAGGAGAAAGG 58.909 37.037 0.00 0.00 0.00 3.11
2077 2185 9.482627 AACGCATAATAAATAGAGAGGAGAAAG 57.517 33.333 0.00 0.00 0.00 2.62
2079 2187 8.421784 ACAACGCATAATAAATAGAGAGGAGAA 58.578 33.333 0.00 0.00 0.00 2.87
2083 2191 7.224753 ACACACAACGCATAATAAATAGAGAGG 59.775 37.037 0.00 0.00 0.00 3.69
2088 2196 8.574627 CACAAACACACAACGCATAATAAATAG 58.425 33.333 0.00 0.00 0.00 1.73
2090 2198 7.114247 GTCACAAACACACAACGCATAATAAAT 59.886 33.333 0.00 0.00 0.00 1.40
2092 2200 5.910166 GTCACAAACACACAACGCATAATAA 59.090 36.000 0.00 0.00 0.00 1.40
2094 2202 4.036262 AGTCACAAACACACAACGCATAAT 59.964 37.500 0.00 0.00 0.00 1.28
2114 2226 4.702131 AGCAAACACATAAGATTCCCAGTC 59.298 41.667 0.00 0.00 0.00 3.51
2149 2261 5.563751 CACACGTGCATTATGTCTAAACAAC 59.436 40.000 17.22 0.00 39.30 3.32
2181 2297 2.296190 AGGCCGTTGAATCCAAAGAAAC 59.704 45.455 0.00 0.00 34.37 2.78
2186 2302 1.818060 CATGAGGCCGTTGAATCCAAA 59.182 47.619 0.00 0.00 33.49 3.28
2251 2367 3.067461 AGAAAAACTGTAATGCGCACCAA 59.933 39.130 14.90 0.00 0.00 3.67
2253 2369 3.282831 AGAAAAACTGTAATGCGCACC 57.717 42.857 14.90 4.07 0.00 5.01
2269 2386 3.306502 CCAGAGTTACCCGCAGTTAGAAA 60.307 47.826 0.00 0.00 0.00 2.52
2272 2389 1.739371 GCCAGAGTTACCCGCAGTTAG 60.739 57.143 0.00 0.00 0.00 2.34
2323 2440 4.627467 GCTATAGTGAACTTGTGAGGTGTG 59.373 45.833 0.84 0.00 0.00 3.82
2324 2441 4.283467 TGCTATAGTGAACTTGTGAGGTGT 59.717 41.667 0.84 0.00 0.00 4.16
2373 2494 3.491598 AACTTGGGCCGGACTGGTG 62.492 63.158 7.57 0.00 41.21 4.17
2374 2495 3.175710 AACTTGGGCCGGACTGGT 61.176 61.111 7.57 0.00 41.21 4.00
2415 2538 0.882927 ACACACGTTAACCGCAGCAT 60.883 50.000 0.00 0.00 41.42 3.79
2432 2556 1.616327 CTGGACCCCCATCCTGACA 60.616 63.158 0.00 0.00 42.59 3.58
2604 2728 1.245732 GCATGATCTGGATTCTGGGC 58.754 55.000 0.00 0.00 0.00 5.36
2611 2735 2.305052 ACGATGATGGCATGATCTGGAT 59.695 45.455 21.79 5.05 34.11 3.41
2612 2736 1.695788 ACGATGATGGCATGATCTGGA 59.304 47.619 21.79 0.00 34.11 3.86
2614 2738 1.197036 GCACGATGATGGCATGATCTG 59.803 52.381 21.79 18.59 34.11 2.90
2615 2739 1.520494 GCACGATGATGGCATGATCT 58.480 50.000 21.79 8.71 34.11 2.75
2616 2740 0.520404 GGCACGATGATGGCATGATC 59.480 55.000 15.86 15.86 44.34 2.92
2641 2765 0.962356 AGCTGAAACCATCAAGCGGG 60.962 55.000 0.00 0.00 37.67 6.13
2659 2791 6.978343 TCGTGTTTTTGTGATAGGGATTAG 57.022 37.500 0.00 0.00 0.00 1.73
2673 2805 9.665264 GAGATAAGTTTCTTTGATCGTGTTTTT 57.335 29.630 0.00 0.00 0.00 1.94
2709 2841 1.064060 GCCGCTGCAAAACGAGATTAT 59.936 47.619 0.00 0.00 37.47 1.28
2710 2842 0.446222 GCCGCTGCAAAACGAGATTA 59.554 50.000 0.00 0.00 37.47 1.75
2724 2869 2.439156 GCTGGAAATGGAGCCGCT 60.439 61.111 0.00 0.00 0.00 5.52
2726 2871 3.204827 CCGCTGGAAATGGAGCCG 61.205 66.667 0.00 0.00 30.98 5.52
2774 2919 1.528309 CCGGTGCACTCCTTGGTTT 60.528 57.895 17.98 0.00 0.00 3.27
2781 2927 0.035820 TATTTGTCCCGGTGCACTCC 60.036 55.000 17.98 0.00 0.00 3.85
2861 3593 2.993840 TCTGAGCTCTGCGTGCCT 60.994 61.111 16.19 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.