Multiple sequence alignment - TraesCS1B01G268300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G268300 chr1B 100.000 3089 0 0 1 3089 471179044 471175956 0.000000e+00 5705.0
1 TraesCS1B01G268300 chr1B 100.000 2924 0 0 3500 6423 471175545 471172622 0.000000e+00 5400.0
2 TraesCS1B01G268300 chr1B 98.344 302 5 0 6122 6423 467348253 467347952 1.230000e-146 531.0
3 TraesCS1B01G268300 chr1B 74.296 817 169 33 3627 4424 471024691 471025485 2.250000e-79 307.0
4 TraesCS1B01G268300 chr1B 78.333 420 85 6 3624 4040 470911456 470911872 3.820000e-67 267.0
5 TraesCS1B01G268300 chr1D 93.831 2561 96 25 3597 6124 349539289 349536758 0.000000e+00 3797.0
6 TraesCS1B01G268300 chr1D 93.325 1678 74 19 27 1688 349542515 349540860 0.000000e+00 2444.0
7 TraesCS1B01G268300 chr1D 84.436 1285 118 42 1695 2923 349540816 349539558 0.000000e+00 1190.0
8 TraesCS1B01G268300 chr1D 78.606 416 83 6 3628 4040 349253821 349254233 2.950000e-68 270.0
9 TraesCS1B01G268300 chr1D 94.505 91 5 0 2920 3010 349539524 349539434 2.410000e-29 141.0
10 TraesCS1B01G268300 chr1A 96.518 1867 62 2 3597 5462 449822413 449820549 0.000000e+00 3085.0
11 TraesCS1B01G268300 chr1A 86.303 1358 90 39 504 1831 449831634 449830343 0.000000e+00 1389.0
12 TraesCS1B01G268300 chr1A 91.560 391 25 5 2198 2582 449829872 449829484 3.410000e-147 532.0
13 TraesCS1B01G268300 chr1A 84.381 525 34 17 2568 3077 449822897 449822406 7.540000e-129 472.0
14 TraesCS1B01G268300 chr1A 89.034 383 33 4 5743 6124 449820115 449819741 3.510000e-127 466.0
15 TraesCS1B01G268300 chr1A 92.832 279 18 2 5463 5741 449820510 449820234 2.790000e-108 403.0
16 TraesCS1B01G268300 chr1A 84.259 324 32 11 1830 2142 449830303 449829988 1.350000e-76 298.0
17 TraesCS1B01G268300 chr1A 79.087 416 81 6 3628 4040 449623824 449624236 1.360000e-71 281.0
18 TraesCS1B01G268300 chr1A 86.391 169 19 3 14 179 449837064 449836897 1.420000e-41 182.0
19 TraesCS1B01G268300 chr1A 90.741 54 3 2 377 430 449831715 449831664 3.210000e-08 71.3
20 TraesCS1B01G268300 chr4B 99.331 299 2 0 6125 6423 138182794 138182496 5.660000e-150 542.0
21 TraesCS1B01G268300 chr4B 97.419 310 7 1 6114 6423 85190187 85189879 1.590000e-145 527.0
22 TraesCS1B01G268300 chr4B 89.899 99 5 4 3500 3595 578530393 578530489 8.750000e-24 122.0
23 TraesCS1B01G268300 chr4A 98.997 299 3 0 6125 6423 740724750 740725048 2.640000e-148 536.0
24 TraesCS1B01G268300 chr4A 98.997 299 3 0 6125 6423 740731690 740731988 2.640000e-148 536.0
25 TraesCS1B01G268300 chr7B 98.671 301 4 0 6123 6423 157870760 157870460 9.480000e-148 534.0
26 TraesCS1B01G268300 chr3B 98.667 300 4 0 6124 6423 679316839 679317138 3.410000e-147 532.0
27 TraesCS1B01G268300 chr3B 87.379 103 8 4 3500 3599 312869655 312869755 5.260000e-21 113.0
28 TraesCS1B01G268300 chr3B 87.500 88 10 1 1830 1916 579451612 579451525 4.100000e-17 100.0
29 TraesCS1B01G268300 chr3B 85.000 80 8 3 1827 1903 427162321 427162243 1.920000e-10 78.7
30 TraesCS1B01G268300 chr7A 98.033 305 5 1 6120 6423 522051061 522051365 4.410000e-146 529.0
31 TraesCS1B01G268300 chr7A 88.372 86 9 1 1830 1914 200638754 200638839 1.140000e-17 102.0
32 TraesCS1B01G268300 chr7A 84.466 103 9 3 3500 3596 645987782 645987883 1.910000e-15 95.3
33 TraesCS1B01G268300 chr5B 98.333 300 5 0 6124 6423 338134122 338133823 1.590000e-145 527.0
34 TraesCS1B01G268300 chr5B 88.235 85 10 0 1830 1914 386559183 386559267 1.140000e-17 102.0
35 TraesCS1B01G268300 chr5B 85.294 102 9 3 3500 3596 400459673 400459573 4.100000e-17 100.0
36 TraesCS1B01G268300 chr2B 93.103 87 5 1 1829 1914 649464861 649464775 6.760000e-25 126.0
37 TraesCS1B01G268300 chr2B 90.698 86 8 0 1830 1915 746714552 746714637 1.460000e-21 115.0
38 TraesCS1B01G268300 chr3D 90.588 85 8 0 1830 1914 86237947 86237863 5.260000e-21 113.0
39 TraesCS1B01G268300 chr2A 88.372 86 10 0 1829 1914 568400649 568400734 3.170000e-18 104.0
40 TraesCS1B01G268300 chr2D 82.558 86 14 1 1830 1914 114546902 114546987 2.480000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G268300 chr1B 471172622 471179044 6422 True 5552.500 5705 100.00000 1 6423 2 chr1B.!!$R2 6422
1 TraesCS1B01G268300 chr1B 471024691 471025485 794 False 307.000 307 74.29600 3627 4424 1 chr1B.!!$F2 797
2 TraesCS1B01G268300 chr1D 349536758 349542515 5757 True 1893.000 3797 91.52425 27 6124 4 chr1D.!!$R1 6097
3 TraesCS1B01G268300 chr1A 449819741 449822897 3156 True 1106.500 3085 90.69125 2568 6124 4 chr1A.!!$R2 3556
4 TraesCS1B01G268300 chr1A 449829484 449831715 2231 True 572.575 1389 88.21575 377 2582 4 chr1A.!!$R3 2205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 953 0.101579 GCTCGTAGCTCTCTTCCACC 59.898 60.0 0.00 0.0 38.45 4.61 F
2157 2342 0.118346 TCCTGCTGGACCTCCCTTAA 59.882 55.0 8.48 0.0 37.46 1.85 F
3552 3912 0.854218 TGGCCCCCAAACACTAAAGA 59.146 50.0 0.00 0.0 0.00 2.52 F
4507 4890 0.107312 AGCCTGCATGAGCTAACTGG 60.107 55.0 0.00 0.0 42.74 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2282 2501 0.865769 CGGGTTGACTTCACGAAAGG 59.134 55.0 0.00 0.00 39.47 3.11 R
3566 3926 0.249657 GCTAGCCGAAGATCACTGGG 60.250 60.0 2.29 0.00 0.00 4.45 R
4532 4915 0.392998 ACTATGGCCGCCTTGTCAAG 60.393 55.0 11.61 5.53 0.00 3.02 R
5729 6179 0.888619 GCATGCCATGATCCATCCAG 59.111 55.0 9.33 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.622701 AATTCTCTAGGACAATTTGCGC 57.377 40.909 0.00 0.00 0.00 6.09
24 25 2.760634 TCTCTAGGACAATTTGCGCA 57.239 45.000 5.66 5.66 0.00 6.09
25 26 3.052455 TCTCTAGGACAATTTGCGCAA 57.948 42.857 21.02 21.02 0.00 4.85
26 27 3.407698 TCTCTAGGACAATTTGCGCAAA 58.592 40.909 35.19 35.19 34.46 3.68
27 28 4.009675 TCTCTAGGACAATTTGCGCAAAT 58.990 39.130 36.22 36.22 42.35 2.32
29 30 4.732784 TCTAGGACAATTTGCGCAAATTC 58.267 39.130 42.94 35.11 46.01 2.17
163 164 6.857956 TGTTCGTTCAATTTCTTTTGAGGAA 58.142 32.000 0.00 0.00 36.97 3.36
197 198 7.649306 CAGTTCAATTTTTCTTTAGGTGGTCAG 59.351 37.037 0.00 0.00 0.00 3.51
268 269 2.238084 GGAAAGAAGCCCATTTCCCT 57.762 50.000 11.34 0.00 45.79 4.20
435 442 6.738114 ACAATTCATGTAACCAAGACAACAG 58.262 36.000 0.00 0.00 41.63 3.16
722 743 2.872038 GCCGTCACATCCTAATCATCCC 60.872 54.545 0.00 0.00 0.00 3.85
756 777 1.815421 CCTCCCATTTCCAGCGACG 60.815 63.158 0.00 0.00 0.00 5.12
878 899 3.760035 CACGCCACGGAGCTACCT 61.760 66.667 0.00 0.00 36.31 3.08
883 904 3.390521 CACGGAGCTACCTGGCCA 61.391 66.667 4.71 4.71 36.31 5.36
887 908 4.537433 GAGCTACCTGGCCAGCCG 62.537 72.222 28.39 17.26 38.61 5.52
928 953 0.101579 GCTCGTAGCTCTCTTCCACC 59.898 60.000 0.00 0.00 38.45 4.61
946 971 3.126225 GCTCCGGTCGAGAGTCGT 61.126 66.667 0.00 0.00 41.63 4.34
947 972 3.091529 CTCCGGTCGAGAGTCGTC 58.908 66.667 0.00 0.00 41.63 4.20
948 973 2.800581 CTCCGGTCGAGAGTCGTCG 61.801 68.421 0.00 5.86 41.63 5.12
957 982 4.060038 GAGTCGTCGGCCGGGAAA 62.060 66.667 27.83 1.61 37.11 3.13
997 1022 3.068691 CCCGCCGGAGAAGAGACA 61.069 66.667 5.05 0.00 0.00 3.41
1101 1126 2.487986 GCCCTTCATCCTAGGTGATTGG 60.488 54.545 9.08 14.37 0.00 3.16
1122 1157 3.885901 GGTTGATCCTCCCTATTTTCAGC 59.114 47.826 0.00 0.00 0.00 4.26
1131 1166 3.054361 TCCCTATTTTCAGCCCAGTTCTC 60.054 47.826 0.00 0.00 0.00 2.87
1136 1171 4.974645 TTTTCAGCCCAGTTCTCTTCTA 57.025 40.909 0.00 0.00 0.00 2.10
1222 1265 1.574702 GGTTTCGCCTCAGGTTTCCG 61.575 60.000 0.00 0.00 0.00 4.30
1265 1309 7.321509 GCGTTATCTCAGTTCTTTGTTTTCTTC 59.678 37.037 0.00 0.00 0.00 2.87
1334 1378 3.321648 TGGAGGCTGCACACGGAT 61.322 61.111 3.93 0.00 0.00 4.18
1352 1396 2.101582 GGATCACGTCTAGTTGAGGCAT 59.898 50.000 0.00 0.00 34.19 4.40
1353 1397 2.654749 TCACGTCTAGTTGAGGCATG 57.345 50.000 0.00 0.00 34.19 4.06
1354 1398 1.002366 CACGTCTAGTTGAGGCATGC 58.998 55.000 9.90 9.90 34.19 4.06
1355 1399 0.608130 ACGTCTAGTTGAGGCATGCA 59.392 50.000 21.36 0.00 34.19 3.96
1370 1414 3.378339 GCATGCAATAACTGGCTTCATC 58.622 45.455 14.21 0.00 0.00 2.92
1399 1443 4.211164 GGCACAAAAGTTAAATCAGGCAAC 59.789 41.667 0.00 0.00 0.00 4.17
1416 1461 3.456280 GCAACAGTTCCAATCTGCAAAA 58.544 40.909 0.00 0.00 36.50 2.44
1420 1465 6.202570 GCAACAGTTCCAATCTGCAAAATTTA 59.797 34.615 0.00 0.00 36.50 1.40
1425 1470 8.610896 CAGTTCCAATCTGCAAAATTTACAAAA 58.389 29.630 0.00 0.00 0.00 2.44
1426 1471 9.341078 AGTTCCAATCTGCAAAATTTACAAAAT 57.659 25.926 0.00 0.00 0.00 1.82
1433 1478 7.836512 TCTGCAAAATTTACAAAATTCGTGAC 58.163 30.769 0.00 5.45 0.00 3.67
1445 1490 6.424207 ACAAAATTCGTGACCTAGAGAGTTTC 59.576 38.462 0.00 0.00 0.00 2.78
1447 1492 2.444421 TCGTGACCTAGAGAGTTTCCC 58.556 52.381 0.00 0.00 0.00 3.97
1453 1498 5.470437 GTGACCTAGAGAGTTTCCCTTTTTG 59.530 44.000 0.00 0.00 0.00 2.44
1470 1515 9.802039 TCCCTTTTTGTATTACACTGTAATTCT 57.198 29.630 17.63 0.12 0.00 2.40
1496 1541 5.974751 AGGTTTATGCGTTTGTAGTGTTTTG 59.025 36.000 0.00 0.00 0.00 2.44
1502 1547 5.090083 TGCGTTTGTAGTGTTTTGACTTTC 58.910 37.500 0.00 0.00 0.00 2.62
1580 1625 5.792741 CAATTGCCAAAAGATACCCAAGAA 58.207 37.500 0.00 0.00 0.00 2.52
1640 1686 8.640651 CAGTATTGCTCTAGCTATCCATATGAT 58.359 37.037 3.65 0.00 42.66 2.45
1647 1693 7.174080 GCTCTAGCTATCCATATGATACATCGA 59.826 40.741 3.65 0.00 38.21 3.59
1651 1697 7.884257 AGCTATCCATATGATACATCGATCAG 58.116 38.462 3.65 0.00 39.18 2.90
1653 1699 8.787852 GCTATCCATATGATACATCGATCAGTA 58.212 37.037 3.65 0.00 39.18 2.74
1688 1735 3.751175 TCAAGGATTTTGCCTCGTACTTG 59.249 43.478 0.00 0.00 37.26 3.16
1783 1886 4.046462 CCACTTCTTGCATGTTGAAACAG 58.954 43.478 1.94 0.00 43.04 3.16
1794 1897 2.095213 TGTTGAAACAGTCTTGACACGC 59.905 45.455 3.49 0.00 34.30 5.34
1816 1919 4.624452 GCGAGTGTTTACTGTTAGGTTAGG 59.376 45.833 0.00 0.00 37.25 2.69
1842 1986 2.593128 GGAGCTACTCCCTCCGTTT 58.407 57.895 1.98 0.00 44.36 3.60
1843 1987 0.903236 GGAGCTACTCCCTCCGTTTT 59.097 55.000 1.98 0.00 44.36 2.43
1850 1994 6.714278 AGCTACTCCCTCCGTTTTAAAATAA 58.286 36.000 3.52 0.00 0.00 1.40
1919 2069 3.039252 AGAACAGAGGGAGTAGATGGG 57.961 52.381 0.00 0.00 0.00 4.00
2002 2155 1.211457 GCCACATGTCATCTTCCCTCT 59.789 52.381 0.00 0.00 0.00 3.69
2011 2164 4.041567 TGTCATCTTCCCTCTAGCAAACAA 59.958 41.667 0.00 0.00 0.00 2.83
2083 2238 5.712446 TCCCAAATTCCACACGAAATATTCA 59.288 36.000 0.00 0.00 33.08 2.57
2087 2242 8.434661 CCAAATTCCACACGAAATATTCAAAAG 58.565 33.333 0.00 0.00 33.08 2.27
2091 2246 4.324402 CCACACGAAATATTCAAAAGCTGC 59.676 41.667 0.00 0.00 0.00 5.25
2098 2253 8.011106 ACGAAATATTCAAAAGCTGCAAAATTG 58.989 29.630 1.02 1.55 0.00 2.32
2099 2254 8.011106 CGAAATATTCAAAAGCTGCAAAATTGT 58.989 29.630 1.02 0.00 0.00 2.71
2103 2260 5.721876 TCAAAAGCTGCAAAATTGTCTTG 57.278 34.783 1.02 0.00 0.00 3.02
2112 2269 5.707931 TGCAAAATTGTCTTGATTCGCATA 58.292 33.333 0.00 0.00 0.00 3.14
2146 2331 6.818142 CCAAACCTTATTTATTTTCCTGCTGG 59.182 38.462 2.58 2.58 0.00 4.85
2157 2342 0.118346 TCCTGCTGGACCTCCCTTAA 59.882 55.000 8.48 0.00 37.46 1.85
2159 2344 1.354368 CCTGCTGGACCTCCCTTAAAA 59.646 52.381 2.92 0.00 35.38 1.52
2161 2346 3.564352 CCTGCTGGACCTCCCTTAAAAAT 60.564 47.826 2.92 0.00 35.38 1.82
2162 2347 4.089361 CTGCTGGACCTCCCTTAAAAATT 58.911 43.478 0.00 0.00 35.38 1.82
2169 2380 5.773176 GGACCTCCCTTAAAAATTCACTGAA 59.227 40.000 0.00 0.00 0.00 3.02
2170 2381 6.437477 GGACCTCCCTTAAAAATTCACTGAAT 59.563 38.462 0.00 0.00 33.25 2.57
2173 2384 7.730332 ACCTCCCTTAAAAATTCACTGAATTCT 59.270 33.333 15.84 9.82 40.77 2.40
2187 2398 5.181811 CACTGAATTCTGCACATGGTCTAAA 59.818 40.000 11.86 0.00 0.00 1.85
2196 2413 3.429410 GCACATGGTCTAAAATTCCAGCC 60.429 47.826 0.00 0.00 34.62 4.85
2202 2420 4.638421 TGGTCTAAAATTCCAGCCAATACG 59.362 41.667 0.00 0.00 0.00 3.06
2213 2431 3.181507 CCAGCCAATACGAATGTGTCTTG 60.182 47.826 0.00 0.00 0.00 3.02
2267 2486 7.807977 AGAAAAGAAGAAGCAGACACAAATA 57.192 32.000 0.00 0.00 0.00 1.40
2282 2501 5.165911 CACAAATATGAGTGTGGATGCTC 57.834 43.478 6.56 0.00 41.19 4.26
2283 2502 4.036027 CACAAATATGAGTGTGGATGCTCC 59.964 45.833 6.56 0.00 41.19 4.70
2300 2519 2.143925 CTCCTTTCGTGAAGTCAACCC 58.856 52.381 1.78 0.00 33.29 4.11
2350 2569 2.336088 CAAGCCTGCACCGTTTGG 59.664 61.111 0.00 0.00 42.84 3.28
2482 2704 8.577296 CATAAGAATCTTCCTCCGTGAGTAATA 58.423 37.037 0.00 0.00 0.00 0.98
2609 2834 4.740695 GGTCGATACAACTTGATAGTGAGC 59.259 45.833 0.00 0.00 34.01 4.26
2719 2946 6.385649 AAAAATAGAGCGACTGTTTTGGAA 57.614 33.333 16.64 0.00 44.79 3.53
2739 2966 5.095490 GGAAGCAGGAATATTGTTGTTTCG 58.905 41.667 14.02 0.00 33.35 3.46
2740 2967 5.106317 GGAAGCAGGAATATTGTTGTTTCGA 60.106 40.000 14.02 0.00 33.35 3.71
2769 2996 2.313374 GCGTGAGATTTCGACGCG 59.687 61.111 3.53 3.53 40.84 6.01
2777 3004 1.065358 GATTTCGACGCGACCAAGAA 58.935 50.000 15.93 7.73 34.89 2.52
2789 3016 4.201485 CGCGACCAAGAAAACATTAATTGC 60.201 41.667 0.00 0.00 0.00 3.56
2876 3107 6.713762 ATCTCAAGGTTTTCATGTCAAACA 57.286 33.333 18.70 4.43 36.07 2.83
2899 3130 7.688372 ACATTCGTCATGTTATCAATGTCTTC 58.312 34.615 0.00 0.00 44.40 2.87
2908 3141 5.222233 TGTTATCAATGTCTTCTTGGGGGAA 60.222 40.000 0.00 0.00 0.00 3.97
2911 3144 2.821969 CAATGTCTTCTTGGGGGAAGTG 59.178 50.000 0.00 0.00 42.19 3.16
2934 3204 3.117208 TCCATATGGATCACAATTGGCCA 60.117 43.478 20.98 0.00 39.78 5.36
2980 3250 3.484229 GCATCTAGCACGTGTGTCAAATC 60.484 47.826 18.38 0.00 44.79 2.17
3016 3286 8.722480 TGTGATTCTGGAACAAGTAATATGAG 57.278 34.615 0.00 0.00 38.70 2.90
3017 3287 8.539544 TGTGATTCTGGAACAAGTAATATGAGA 58.460 33.333 0.00 0.00 38.70 3.27
3018 3288 9.383519 GTGATTCTGGAACAAGTAATATGAGAA 57.616 33.333 0.00 0.00 38.70 2.87
3019 3289 9.958180 TGATTCTGGAACAAGTAATATGAGAAA 57.042 29.630 0.00 0.00 38.70 2.52
3070 3430 8.731605 TGAAAATGTTTTAGCATACGGATACAA 58.268 29.630 0.00 0.00 0.00 2.41
3071 3431 9.730420 GAAAATGTTTTAGCATACGGATACAAT 57.270 29.630 0.00 0.00 0.00 2.71
3074 3434 9.515020 AATGTTTTAGCATACGGATACAATTTG 57.485 29.630 0.00 0.00 0.00 2.32
3075 3435 8.270080 TGTTTTAGCATACGGATACAATTTGA 57.730 30.769 2.79 0.00 0.00 2.69
3076 3436 8.731605 TGTTTTAGCATACGGATACAATTTGAA 58.268 29.630 2.79 0.00 0.00 2.69
3077 3437 9.006215 GTTTTAGCATACGGATACAATTTGAAC 57.994 33.333 2.79 0.00 0.00 3.18
3078 3438 7.851387 TTAGCATACGGATACAATTTGAACA 57.149 32.000 2.79 0.00 0.00 3.18
3079 3439 6.751514 AGCATACGGATACAATTTGAACAA 57.248 33.333 2.79 0.00 0.00 2.83
3080 3440 7.333528 AGCATACGGATACAATTTGAACAAT 57.666 32.000 2.79 0.00 0.00 2.71
3081 3441 7.195646 AGCATACGGATACAATTTGAACAATG 58.804 34.615 2.79 0.00 0.00 2.82
3082 3442 6.417635 GCATACGGATACAATTTGAACAATGG 59.582 38.462 2.79 0.00 0.00 3.16
3083 3443 4.743493 ACGGATACAATTTGAACAATGGC 58.257 39.130 2.79 0.00 0.00 4.40
3084 3444 3.790820 CGGATACAATTTGAACAATGGCG 59.209 43.478 2.79 0.00 0.00 5.69
3085 3445 4.111916 GGATACAATTTGAACAATGGCGG 58.888 43.478 2.79 0.00 0.00 6.13
3086 3446 4.142271 GGATACAATTTGAACAATGGCGGA 60.142 41.667 2.79 0.00 0.00 5.54
3087 3447 3.302365 ACAATTTGAACAATGGCGGAG 57.698 42.857 2.79 0.00 0.00 4.63
3519 3879 3.493475 AGGGAGGCTTAGGTTAGACTT 57.507 47.619 0.00 0.00 32.24 3.01
3520 3880 3.804550 AGGGAGGCTTAGGTTAGACTTT 58.195 45.455 0.00 0.00 32.24 2.66
3521 3881 4.176753 AGGGAGGCTTAGGTTAGACTTTT 58.823 43.478 0.00 0.00 32.24 2.27
3522 3882 4.602294 AGGGAGGCTTAGGTTAGACTTTTT 59.398 41.667 0.00 0.00 32.24 1.94
3541 3901 1.734655 TTTTTAGCATTTGGCCCCCA 58.265 45.000 0.00 0.00 46.50 4.96
3542 3902 1.734655 TTTTAGCATTTGGCCCCCAA 58.265 45.000 0.00 0.00 46.50 4.12
3549 3909 3.948425 TTTGGCCCCCAAACACTAA 57.052 47.368 0.00 0.00 46.92 2.24
3550 3910 2.176247 TTTGGCCCCCAAACACTAAA 57.824 45.000 0.00 0.00 46.92 1.85
3551 3911 1.710816 TTGGCCCCCAAACACTAAAG 58.289 50.000 0.00 0.00 40.92 1.85
3552 3912 0.854218 TGGCCCCCAAACACTAAAGA 59.146 50.000 0.00 0.00 0.00 2.52
3553 3913 1.431243 TGGCCCCCAAACACTAAAGAT 59.569 47.619 0.00 0.00 0.00 2.40
3554 3914 2.158234 TGGCCCCCAAACACTAAAGATT 60.158 45.455 0.00 0.00 0.00 2.40
3555 3915 2.903784 GGCCCCCAAACACTAAAGATTT 59.096 45.455 0.00 0.00 0.00 2.17
3556 3916 3.326588 GGCCCCCAAACACTAAAGATTTT 59.673 43.478 0.00 0.00 0.00 1.82
3557 3917 4.202419 GGCCCCCAAACACTAAAGATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
3558 3918 4.754618 GCCCCCAAACACTAAAGATTTTTG 59.245 41.667 0.00 0.00 0.00 2.44
3559 3919 4.754618 CCCCCAAACACTAAAGATTTTTGC 59.245 41.667 0.00 0.00 0.00 3.68
3560 3920 5.454613 CCCCCAAACACTAAAGATTTTTGCT 60.455 40.000 0.00 0.00 0.00 3.91
3561 3921 6.054941 CCCCAAACACTAAAGATTTTTGCTT 58.945 36.000 0.00 0.00 0.00 3.91
3562 3922 6.202762 CCCCAAACACTAAAGATTTTTGCTTC 59.797 38.462 0.00 0.00 0.00 3.86
3563 3923 6.074356 CCCAAACACTAAAGATTTTTGCTTCG 60.074 38.462 0.00 0.00 0.00 3.79
3564 3924 6.347110 CAAACACTAAAGATTTTTGCTTCGC 58.653 36.000 0.00 0.00 0.00 4.70
3565 3925 4.546570 ACACTAAAGATTTTTGCTTCGCC 58.453 39.130 0.00 0.00 0.00 5.54
3566 3926 3.920412 CACTAAAGATTTTTGCTTCGCCC 59.080 43.478 0.00 0.00 0.00 6.13
3567 3927 2.455674 AAAGATTTTTGCTTCGCCCC 57.544 45.000 0.00 0.00 0.00 5.80
3568 3928 0.608130 AAGATTTTTGCTTCGCCCCC 59.392 50.000 0.00 0.00 0.00 5.40
3569 3929 0.541764 AGATTTTTGCTTCGCCCCCA 60.542 50.000 0.00 0.00 0.00 4.96
3570 3930 0.108662 GATTTTTGCTTCGCCCCCAG 60.109 55.000 0.00 0.00 0.00 4.45
3571 3931 0.831711 ATTTTTGCTTCGCCCCCAGT 60.832 50.000 0.00 0.00 0.00 4.00
3572 3932 1.743321 TTTTTGCTTCGCCCCCAGTG 61.743 55.000 0.00 0.00 0.00 3.66
3573 3933 2.632602 TTTTGCTTCGCCCCCAGTGA 62.633 55.000 0.00 0.00 0.00 3.41
3574 3934 2.424842 TTTGCTTCGCCCCCAGTGAT 62.425 55.000 0.00 0.00 34.20 3.06
3575 3935 2.514824 GCTTCGCCCCCAGTGATC 60.515 66.667 0.00 0.00 34.20 2.92
3576 3936 3.036429 GCTTCGCCCCCAGTGATCT 62.036 63.158 0.00 0.00 34.20 2.75
3577 3937 1.604378 CTTCGCCCCCAGTGATCTT 59.396 57.895 0.00 0.00 34.20 2.40
3578 3938 0.462759 CTTCGCCCCCAGTGATCTTC 60.463 60.000 0.00 0.00 34.20 2.87
3579 3939 2.202932 CGCCCCCAGTGATCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
3580 3940 2.190578 GCCCCCAGTGATCTTCGG 59.809 66.667 0.00 0.00 0.00 4.30
3581 3941 2.190578 CCCCCAGTGATCTTCGGC 59.809 66.667 0.00 0.00 0.00 5.54
3582 3942 2.370445 CCCCCAGTGATCTTCGGCT 61.370 63.158 0.00 0.00 0.00 5.52
3583 3943 1.048724 CCCCCAGTGATCTTCGGCTA 61.049 60.000 0.00 0.00 0.00 3.93
3584 3944 0.390860 CCCCAGTGATCTTCGGCTAG 59.609 60.000 0.00 0.00 0.00 3.42
3585 3945 0.249657 CCCAGTGATCTTCGGCTAGC 60.250 60.000 6.04 6.04 0.00 3.42
3586 3946 0.749649 CCAGTGATCTTCGGCTAGCT 59.250 55.000 15.72 0.00 0.00 3.32
3587 3947 1.269517 CCAGTGATCTTCGGCTAGCTC 60.270 57.143 15.72 3.42 0.00 4.09
3588 3948 1.036707 AGTGATCTTCGGCTAGCTCC 58.963 55.000 15.72 0.00 0.00 4.70
3624 3984 6.511416 TGAAATATAACATTTCCCGCCATTG 58.489 36.000 7.14 0.00 37.25 2.82
3625 3985 5.467035 AATATAACATTTCCCGCCATTGG 57.533 39.130 0.00 0.00 0.00 3.16
3773 4133 3.953775 ACCAACCTCACCCCGCTG 61.954 66.667 0.00 0.00 0.00 5.18
3848 4208 1.270732 GGCTCCATCATCTACCAGCTG 60.271 57.143 6.78 6.78 0.00 4.24
4220 4589 1.305219 CCACCATCGCCATGTTCGTT 61.305 55.000 4.83 0.00 0.00 3.85
4253 4622 2.181021 GTGTCCGGGTACTCGCTG 59.819 66.667 10.40 0.00 0.00 5.18
4259 4628 0.458669 CCGGGTACTCGCTGTATGTT 59.541 55.000 10.40 0.00 33.23 2.71
4271 4640 2.838736 CTGTATGTTAAGATGCCGCCT 58.161 47.619 0.00 0.00 0.00 5.52
4429 4801 2.706723 TCCACACCAACCAGCTAAAGTA 59.293 45.455 0.00 0.00 0.00 2.24
4432 4804 3.058224 CACACCAACCAGCTAAAGTAAGC 60.058 47.826 0.00 0.00 43.11 3.09
4477 4849 6.809196 TGGCAACCGATGAAATTTTTATGTAC 59.191 34.615 0.00 0.00 0.00 2.90
4506 4889 1.015109 CAGCCTGCATGAGCTAACTG 58.985 55.000 0.00 0.00 42.74 3.16
4507 4890 0.107312 AGCCTGCATGAGCTAACTGG 60.107 55.000 0.00 0.00 42.74 4.00
4508 4891 0.107508 GCCTGCATGAGCTAACTGGA 60.108 55.000 0.00 0.00 42.74 3.86
4509 4892 1.950828 CCTGCATGAGCTAACTGGAG 58.049 55.000 0.00 0.00 42.74 3.86
4532 4915 7.496263 GGAGTAGTTCTTGAATGATAAGGTTCC 59.504 40.741 0.00 0.00 0.00 3.62
4690 5073 3.676605 ATGGTGACCGCGTCGTCA 61.677 61.111 13.22 13.22 40.44 4.35
5398 5781 2.434884 AATGGCACCGAGAGCACG 60.435 61.111 0.00 0.00 0.00 5.34
5409 5792 0.603569 GAGAGCACGAAGAAGGGTGA 59.396 55.000 0.00 0.00 36.25 4.02
5442 5825 6.118170 AGTAACTAGAATGCGTGGTAGAGTA 58.882 40.000 0.00 0.00 0.00 2.59
5466 5889 9.458374 GTAACATTTGGGACGGAATAATATTTG 57.542 33.333 0.00 0.00 0.00 2.32
5478 5901 6.992715 CGGAATAATATTTGGGAACACTCTCT 59.007 38.462 0.00 0.00 42.67 3.10
5597 6020 8.651391 AACGTGATATCAACGGTCAATTTATA 57.349 30.769 22.67 0.00 0.00 0.98
5634 6059 3.016736 ACATAGCAAGGATTTGTTCCCG 58.983 45.455 0.00 0.00 46.81 5.14
5681 6131 8.571461 AAGTATATAGATCGGTTTTTCGACAC 57.429 34.615 0.00 0.00 42.21 3.67
5682 6132 7.709947 AGTATATAGATCGGTTTTTCGACACA 58.290 34.615 0.00 0.00 42.21 3.72
5683 6133 8.192774 AGTATATAGATCGGTTTTTCGACACAA 58.807 33.333 0.00 0.00 42.21 3.33
5684 6134 3.872560 AGATCGGTTTTTCGACACAAC 57.127 42.857 0.00 0.00 42.21 3.32
5685 6135 3.463944 AGATCGGTTTTTCGACACAACT 58.536 40.909 0.00 0.00 42.21 3.16
5686 6136 3.875134 AGATCGGTTTTTCGACACAACTT 59.125 39.130 0.00 0.00 42.21 2.66
5687 6137 4.334481 AGATCGGTTTTTCGACACAACTTT 59.666 37.500 0.00 0.00 42.21 2.66
5688 6138 5.524646 AGATCGGTTTTTCGACACAACTTTA 59.475 36.000 0.00 0.00 42.21 1.85
5689 6139 5.738118 TCGGTTTTTCGACACAACTTTAT 57.262 34.783 0.00 0.00 33.92 1.40
5690 6140 6.841443 TCGGTTTTTCGACACAACTTTATA 57.159 33.333 0.00 0.00 33.92 0.98
5691 6141 6.879962 TCGGTTTTTCGACACAACTTTATAG 58.120 36.000 0.00 0.00 33.92 1.31
5692 6142 6.700960 TCGGTTTTTCGACACAACTTTATAGA 59.299 34.615 0.00 0.00 33.92 1.98
5693 6143 7.385752 TCGGTTTTTCGACACAACTTTATAGAT 59.614 33.333 0.00 0.00 33.92 1.98
5694 6144 7.686938 CGGTTTTTCGACACAACTTTATAGATC 59.313 37.037 0.00 0.00 0.00 2.75
5695 6145 7.686938 GGTTTTTCGACACAACTTTATAGATCG 59.313 37.037 0.00 0.00 0.00 3.69
5696 6146 6.880822 TTTCGACACAACTTTATAGATCGG 57.119 37.500 0.00 0.00 0.00 4.18
5697 6147 5.571784 TCGACACAACTTTATAGATCGGT 57.428 39.130 0.00 0.00 0.00 4.69
5698 6148 5.957798 TCGACACAACTTTATAGATCGGTT 58.042 37.500 0.00 0.00 0.00 4.44
5699 6149 6.392354 TCGACACAACTTTATAGATCGGTTT 58.608 36.000 0.00 0.00 0.00 3.27
5700 6150 6.869913 TCGACACAACTTTATAGATCGGTTTT 59.130 34.615 0.00 0.00 0.00 2.43
5703 6153 8.385898 ACACAACTTTATAGATCGGTTTTTCA 57.614 30.769 0.00 0.00 0.00 2.69
5714 6164 7.447374 AGATCGGTTTTTCAACACATCATAA 57.553 32.000 0.00 0.00 34.15 1.90
5729 6179 8.879342 ACACATCATAAATACTTCTCTAGCAC 57.121 34.615 0.00 0.00 0.00 4.40
5732 6182 8.147058 ACATCATAAATACTTCTCTAGCACTGG 58.853 37.037 0.00 0.00 0.00 4.00
5741 6310 3.854437 TCTCTAGCACTGGATGGATCAT 58.146 45.455 0.00 0.00 0.00 2.45
5755 6324 0.873054 GATCATGGCATGCTTCGAGG 59.127 55.000 22.56 1.34 0.00 4.63
5839 6408 1.822990 CTGCAAGGCTCCAATGACAAT 59.177 47.619 0.00 0.00 0.00 2.71
5840 6409 3.018856 CTGCAAGGCTCCAATGACAATA 58.981 45.455 0.00 0.00 0.00 1.90
5883 6453 2.960384 CGTTTGGAGGGGTAAAGGTTTT 59.040 45.455 0.00 0.00 0.00 2.43
5886 6456 5.945191 CGTTTGGAGGGGTAAAGGTTTTATA 59.055 40.000 0.00 0.00 0.00 0.98
5895 6465 5.996513 GGGTAAAGGTTTTATAGCTCTAGGC 59.003 44.000 0.00 0.00 42.19 3.93
5946 6516 7.740519 AAACTTTTCATTCGTTGTTCTTCTG 57.259 32.000 0.00 0.00 0.00 3.02
5957 6527 6.491394 TCGTTGTTCTTCTGTTGTAATTTGG 58.509 36.000 0.00 0.00 0.00 3.28
5965 6535 5.689383 TCTGTTGTAATTTGGTCTCTTGC 57.311 39.130 0.00 0.00 0.00 4.01
6072 6642 8.958175 TCAAGTAGTTTGTTTACAAAGTTGTG 57.042 30.769 17.90 13.77 44.53 3.33
6124 6694 6.222038 TCTAAGCCATACATCTTCGTTTCT 57.778 37.500 0.00 0.00 0.00 2.52
6125 6695 6.042777 TCTAAGCCATACATCTTCGTTTCTG 58.957 40.000 0.00 0.00 0.00 3.02
6126 6696 4.207891 AGCCATACATCTTCGTTTCTGT 57.792 40.909 0.00 0.00 0.00 3.41
6127 6697 5.339008 AGCCATACATCTTCGTTTCTGTA 57.661 39.130 0.00 0.00 0.00 2.74
6128 6698 5.730550 AGCCATACATCTTCGTTTCTGTAA 58.269 37.500 0.00 0.00 0.00 2.41
6129 6699 5.812642 AGCCATACATCTTCGTTTCTGTAAG 59.187 40.000 0.00 0.00 0.00 2.34
6130 6700 5.581085 GCCATACATCTTCGTTTCTGTAAGT 59.419 40.000 0.00 0.00 33.76 2.24
6131 6701 6.455646 GCCATACATCTTCGTTTCTGTAAGTG 60.456 42.308 0.00 0.00 33.76 3.16
6132 6702 4.992381 ACATCTTCGTTTCTGTAAGTGC 57.008 40.909 0.00 0.00 33.76 4.40
6133 6703 4.377021 ACATCTTCGTTTCTGTAAGTGCA 58.623 39.130 0.00 0.00 33.76 4.57
6134 6704 4.997395 ACATCTTCGTTTCTGTAAGTGCAT 59.003 37.500 0.00 0.00 33.76 3.96
6135 6705 5.120830 ACATCTTCGTTTCTGTAAGTGCATC 59.879 40.000 0.00 0.00 33.76 3.91
6136 6706 4.883083 TCTTCGTTTCTGTAAGTGCATCT 58.117 39.130 0.00 0.00 33.76 2.90
6137 6707 6.020971 TCTTCGTTTCTGTAAGTGCATCTA 57.979 37.500 0.00 0.00 33.76 1.98
6138 6708 6.093404 TCTTCGTTTCTGTAAGTGCATCTAG 58.907 40.000 0.00 0.00 33.76 2.43
6139 6709 5.386958 TCGTTTCTGTAAGTGCATCTAGT 57.613 39.130 0.00 0.00 33.76 2.57
6140 6710 5.161358 TCGTTTCTGTAAGTGCATCTAGTG 58.839 41.667 0.00 0.00 33.76 2.74
6153 6723 4.696479 CATCTAGTGCCCCTTAGTGATT 57.304 45.455 0.00 0.00 0.00 2.57
6154 6724 5.041191 CATCTAGTGCCCCTTAGTGATTT 57.959 43.478 0.00 0.00 0.00 2.17
6155 6725 5.440610 CATCTAGTGCCCCTTAGTGATTTT 58.559 41.667 0.00 0.00 0.00 1.82
6156 6726 4.843728 TCTAGTGCCCCTTAGTGATTTTG 58.156 43.478 0.00 0.00 0.00 2.44
6157 6727 2.807676 AGTGCCCCTTAGTGATTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
6158 6728 2.110011 AGTGCCCCTTAGTGATTTTGGT 59.890 45.455 0.00 0.00 0.00 3.67
6159 6729 2.231235 GTGCCCCTTAGTGATTTTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
6160 6730 2.158385 TGCCCCTTAGTGATTTTGGTGT 60.158 45.455 0.00 0.00 0.00 4.16
6161 6731 3.074687 TGCCCCTTAGTGATTTTGGTGTA 59.925 43.478 0.00 0.00 0.00 2.90
6162 6732 4.264172 TGCCCCTTAGTGATTTTGGTGTAT 60.264 41.667 0.00 0.00 0.00 2.29
6163 6733 4.709886 GCCCCTTAGTGATTTTGGTGTATT 59.290 41.667 0.00 0.00 0.00 1.89
6164 6734 5.394115 GCCCCTTAGTGATTTTGGTGTATTG 60.394 44.000 0.00 0.00 0.00 1.90
6165 6735 5.949354 CCCCTTAGTGATTTTGGTGTATTGA 59.051 40.000 0.00 0.00 0.00 2.57
6166 6736 6.435904 CCCCTTAGTGATTTTGGTGTATTGAA 59.564 38.462 0.00 0.00 0.00 2.69
6167 6737 7.362920 CCCCTTAGTGATTTTGGTGTATTGAAG 60.363 40.741 0.00 0.00 0.00 3.02
6168 6738 7.393234 CCCTTAGTGATTTTGGTGTATTGAAGA 59.607 37.037 0.00 0.00 0.00 2.87
6169 6739 8.237267 CCTTAGTGATTTTGGTGTATTGAAGAC 58.763 37.037 0.00 0.00 0.00 3.01
6170 6740 8.918202 TTAGTGATTTTGGTGTATTGAAGACT 57.082 30.769 0.00 0.00 0.00 3.24
6171 6741 7.823745 AGTGATTTTGGTGTATTGAAGACTT 57.176 32.000 0.00 0.00 0.00 3.01
6172 6742 8.918202 AGTGATTTTGGTGTATTGAAGACTTA 57.082 30.769 0.00 0.00 0.00 2.24
6173 6743 9.520515 AGTGATTTTGGTGTATTGAAGACTTAT 57.479 29.630 0.00 0.00 0.00 1.73
6177 6747 9.975218 ATTTTGGTGTATTGAAGACTTATAGGT 57.025 29.630 0.00 0.00 0.00 3.08
6178 6748 9.802039 TTTTGGTGTATTGAAGACTTATAGGTT 57.198 29.630 0.00 0.00 0.00 3.50
6192 6762 8.569641 AGACTTATAGGTTAAGAGACTAATGCG 58.430 37.037 0.00 0.00 0.00 4.73
6193 6763 8.235359 ACTTATAGGTTAAGAGACTAATGCGT 57.765 34.615 0.00 0.00 0.00 5.24
6194 6764 8.693625 ACTTATAGGTTAAGAGACTAATGCGTT 58.306 33.333 0.00 0.00 0.00 4.84
6195 6765 9.530633 CTTATAGGTTAAGAGACTAATGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
6196 6766 7.772332 ATAGGTTAAGAGACTAATGCGTTTG 57.228 36.000 0.00 0.00 0.00 2.93
6197 6767 5.548406 AGGTTAAGAGACTAATGCGTTTGT 58.452 37.500 5.40 5.40 0.00 2.83
6198 6768 5.408604 AGGTTAAGAGACTAATGCGTTTGTG 59.591 40.000 10.53 0.00 0.00 3.33
6199 6769 5.407387 GGTTAAGAGACTAATGCGTTTGTGA 59.593 40.000 10.53 0.00 0.00 3.58
6200 6770 6.401153 GGTTAAGAGACTAATGCGTTTGTGAG 60.401 42.308 10.53 0.00 0.00 3.51
6201 6771 4.258702 AGAGACTAATGCGTTTGTGAGT 57.741 40.909 10.53 0.85 0.00 3.41
6202 6772 3.990469 AGAGACTAATGCGTTTGTGAGTG 59.010 43.478 10.53 0.00 0.00 3.51
6203 6773 3.728845 AGACTAATGCGTTTGTGAGTGT 58.271 40.909 10.53 0.00 0.00 3.55
6204 6774 4.878439 AGACTAATGCGTTTGTGAGTGTA 58.122 39.130 10.53 0.00 0.00 2.90
6205 6775 4.684703 AGACTAATGCGTTTGTGAGTGTAC 59.315 41.667 10.53 0.00 0.00 2.90
6206 6776 4.373527 ACTAATGCGTTTGTGAGTGTACA 58.626 39.130 4.90 0.00 0.00 2.90
6207 6777 3.602390 AATGCGTTTGTGAGTGTACAC 57.398 42.857 18.56 18.56 40.68 2.90
6208 6778 2.011540 TGCGTTTGTGAGTGTACACA 57.988 45.000 27.06 5.37 46.86 3.72
6218 6788 6.510879 TGTGAGTGTACACAGGTCTATAAG 57.489 41.667 27.06 0.00 44.29 1.73
6219 6789 6.008331 TGTGAGTGTACACAGGTCTATAAGT 58.992 40.000 27.06 2.15 44.29 2.24
6220 6790 6.150641 TGTGAGTGTACACAGGTCTATAAGTC 59.849 42.308 27.06 11.81 44.29 3.01
6221 6791 6.374894 GTGAGTGTACACAGGTCTATAAGTCT 59.625 42.308 27.06 1.48 40.11 3.24
6222 6792 7.551974 GTGAGTGTACACAGGTCTATAAGTCTA 59.448 40.741 27.06 1.34 40.11 2.59
6223 6793 8.272889 TGAGTGTACACAGGTCTATAAGTCTAT 58.727 37.037 27.06 0.40 0.00 1.98
6224 6794 8.453238 AGTGTACACAGGTCTATAAGTCTATG 57.547 38.462 27.06 0.00 0.00 2.23
6225 6795 8.272889 AGTGTACACAGGTCTATAAGTCTATGA 58.727 37.037 27.06 0.00 0.00 2.15
6226 6796 8.561212 GTGTACACAGGTCTATAAGTCTATGAG 58.439 40.741 21.14 0.00 0.00 2.90
6227 6797 7.720074 TGTACACAGGTCTATAAGTCTATGAGG 59.280 40.741 0.00 0.00 0.00 3.86
6228 6798 6.912426 ACACAGGTCTATAAGTCTATGAGGA 58.088 40.000 0.00 0.00 0.00 3.71
6229 6799 7.001674 ACACAGGTCTATAAGTCTATGAGGAG 58.998 42.308 0.00 0.00 0.00 3.69
6230 6800 7.001674 CACAGGTCTATAAGTCTATGAGGAGT 58.998 42.308 0.00 0.00 0.00 3.85
6231 6801 7.504238 CACAGGTCTATAAGTCTATGAGGAGTT 59.496 40.741 0.00 0.00 33.92 3.01
6232 6802 8.062536 ACAGGTCTATAAGTCTATGAGGAGTTT 58.937 37.037 0.00 0.00 32.06 2.66
6233 6803 8.356657 CAGGTCTATAAGTCTATGAGGAGTTTG 58.643 40.741 0.00 0.00 32.06 2.93
6234 6804 8.282982 AGGTCTATAAGTCTATGAGGAGTTTGA 58.717 37.037 0.00 0.00 32.06 2.69
6235 6805 9.084533 GGTCTATAAGTCTATGAGGAGTTTGAT 57.915 37.037 0.00 0.00 32.06 2.57
6244 6814 9.482627 GTCTATGAGGAGTTTGATATTTACAGG 57.517 37.037 0.00 0.00 0.00 4.00
6245 6815 8.651389 TCTATGAGGAGTTTGATATTTACAGGG 58.349 37.037 0.00 0.00 0.00 4.45
6246 6816 6.884472 TGAGGAGTTTGATATTTACAGGGA 57.116 37.500 0.00 0.00 0.00 4.20
6247 6817 7.265599 TGAGGAGTTTGATATTTACAGGGAA 57.734 36.000 0.00 0.00 0.00 3.97
6248 6818 7.695055 TGAGGAGTTTGATATTTACAGGGAAA 58.305 34.615 0.00 0.00 0.00 3.13
6249 6819 7.829211 TGAGGAGTTTGATATTTACAGGGAAAG 59.171 37.037 0.00 0.00 0.00 2.62
6250 6820 7.699878 AGGAGTTTGATATTTACAGGGAAAGT 58.300 34.615 0.00 0.00 0.00 2.66
6251 6821 7.829706 AGGAGTTTGATATTTACAGGGAAAGTC 59.170 37.037 0.00 0.00 0.00 3.01
6252 6822 7.201617 GGAGTTTGATATTTACAGGGAAAGTCG 60.202 40.741 0.00 0.00 0.00 4.18
6253 6823 7.391620 AGTTTGATATTTACAGGGAAAGTCGA 58.608 34.615 0.00 0.00 0.00 4.20
6254 6824 7.333672 AGTTTGATATTTACAGGGAAAGTCGAC 59.666 37.037 7.70 7.70 0.00 4.20
6255 6825 5.667466 TGATATTTACAGGGAAAGTCGACC 58.333 41.667 13.01 0.00 0.00 4.79
6256 6826 2.845363 TTTACAGGGAAAGTCGACCC 57.155 50.000 13.01 6.30 45.88 4.46
6257 6827 0.978907 TTACAGGGAAAGTCGACCCC 59.021 55.000 17.91 17.91 46.64 4.95
6262 6832 2.865119 GGGAAAGTCGACCCCTAAAA 57.135 50.000 18.21 0.00 40.19 1.52
6263 6833 3.144657 GGGAAAGTCGACCCCTAAAAA 57.855 47.619 18.21 0.00 40.19 1.94
6264 6834 3.693807 GGGAAAGTCGACCCCTAAAAAT 58.306 45.455 18.21 0.00 40.19 1.82
6265 6835 3.442625 GGGAAAGTCGACCCCTAAAAATG 59.557 47.826 18.21 0.00 40.19 2.32
6266 6836 4.329392 GGAAAGTCGACCCCTAAAAATGA 58.671 43.478 13.01 0.00 0.00 2.57
6267 6837 4.763279 GGAAAGTCGACCCCTAAAAATGAA 59.237 41.667 13.01 0.00 0.00 2.57
6268 6838 5.417894 GGAAAGTCGACCCCTAAAAATGAAT 59.582 40.000 13.01 0.00 0.00 2.57
6269 6839 6.600427 GGAAAGTCGACCCCTAAAAATGAATA 59.400 38.462 13.01 0.00 0.00 1.75
6270 6840 7.284716 GGAAAGTCGACCCCTAAAAATGAATAT 59.715 37.037 13.01 0.00 0.00 1.28
6271 6841 7.803279 AAGTCGACCCCTAAAAATGAATATC 57.197 36.000 13.01 0.00 0.00 1.63
6272 6842 7.138054 AGTCGACCCCTAAAAATGAATATCT 57.862 36.000 13.01 0.00 0.00 1.98
6273 6843 7.574607 AGTCGACCCCTAAAAATGAATATCTT 58.425 34.615 13.01 0.00 0.00 2.40
6274 6844 7.715686 AGTCGACCCCTAAAAATGAATATCTTC 59.284 37.037 13.01 0.00 0.00 2.87
6275 6845 6.704493 TCGACCCCTAAAAATGAATATCTTCG 59.296 38.462 0.00 0.00 33.86 3.79
6276 6846 6.704493 CGACCCCTAAAAATGAATATCTTCGA 59.296 38.462 0.00 0.00 33.86 3.71
6277 6847 7.307219 CGACCCCTAAAAATGAATATCTTCGAC 60.307 40.741 0.00 0.00 33.86 4.20
6278 6848 7.574607 ACCCCTAAAAATGAATATCTTCGACT 58.425 34.615 0.00 0.00 33.86 4.18
6279 6849 7.499232 ACCCCTAAAAATGAATATCTTCGACTG 59.501 37.037 0.00 0.00 33.86 3.51
6280 6850 7.715249 CCCCTAAAAATGAATATCTTCGACTGA 59.285 37.037 0.00 0.00 33.86 3.41
6281 6851 9.109393 CCCTAAAAATGAATATCTTCGACTGAA 57.891 33.333 0.00 0.00 33.86 3.02
6296 6866 7.979444 TTCGACTGAAGATTTTGGTATTTCT 57.021 32.000 0.00 0.00 0.00 2.52
6297 6867 7.364522 TCGACTGAAGATTTTGGTATTTCTG 57.635 36.000 0.00 0.00 0.00 3.02
6298 6868 7.158697 TCGACTGAAGATTTTGGTATTTCTGA 58.841 34.615 0.00 0.00 0.00 3.27
6299 6869 7.117812 TCGACTGAAGATTTTGGTATTTCTGAC 59.882 37.037 0.00 0.00 0.00 3.51
6300 6870 7.133891 ACTGAAGATTTTGGTATTTCTGACG 57.866 36.000 0.00 0.00 0.00 4.35
6301 6871 6.934645 ACTGAAGATTTTGGTATTTCTGACGA 59.065 34.615 0.00 0.00 0.00 4.20
6302 6872 7.095187 ACTGAAGATTTTGGTATTTCTGACGAC 60.095 37.037 0.00 0.00 0.00 4.34
6303 6873 6.934645 TGAAGATTTTGGTATTTCTGACGACT 59.065 34.615 0.00 0.00 0.00 4.18
6304 6874 7.444183 TGAAGATTTTGGTATTTCTGACGACTT 59.556 33.333 0.00 0.00 0.00 3.01
6305 6875 7.745620 AGATTTTGGTATTTCTGACGACTTT 57.254 32.000 0.00 0.00 0.00 2.66
6306 6876 7.807680 AGATTTTGGTATTTCTGACGACTTTC 58.192 34.615 0.00 0.00 0.00 2.62
6307 6877 6.928979 TTTTGGTATTTCTGACGACTTTCA 57.071 33.333 0.00 0.00 0.00 2.69
6308 6878 7.504924 TTTTGGTATTTCTGACGACTTTCAT 57.495 32.000 0.00 0.00 0.00 2.57
6309 6879 6.480524 TTGGTATTTCTGACGACTTTCATG 57.519 37.500 0.00 0.00 0.00 3.07
6310 6880 5.789521 TGGTATTTCTGACGACTTTCATGA 58.210 37.500 0.00 0.00 0.00 3.07
6311 6881 6.227522 TGGTATTTCTGACGACTTTCATGAA 58.772 36.000 3.38 3.38 0.00 2.57
6312 6882 6.368791 TGGTATTTCTGACGACTTTCATGAAG 59.631 38.462 8.41 5.87 41.32 3.02
6313 6883 6.590292 GGTATTTCTGACGACTTTCATGAAGA 59.410 38.462 8.41 0.00 38.77 2.87
6314 6884 5.907197 TTTCTGACGACTTTCATGAAGAC 57.093 39.130 8.41 3.74 38.77 3.01
6315 6885 4.855715 TCTGACGACTTTCATGAAGACT 57.144 40.909 8.41 0.00 38.77 3.24
6316 6886 5.201713 TCTGACGACTTTCATGAAGACTT 57.798 39.130 8.41 0.00 38.77 3.01
6317 6887 5.601662 TCTGACGACTTTCATGAAGACTTT 58.398 37.500 8.41 0.00 38.77 2.66
6318 6888 5.463392 TCTGACGACTTTCATGAAGACTTTG 59.537 40.000 8.41 1.17 38.77 2.77
6319 6889 5.356426 TGACGACTTTCATGAAGACTTTGA 58.644 37.500 8.41 0.00 38.77 2.69
6320 6890 5.815222 TGACGACTTTCATGAAGACTTTGAA 59.185 36.000 8.41 0.00 38.77 2.69
6321 6891 6.315144 TGACGACTTTCATGAAGACTTTGAAA 59.685 34.615 8.41 12.36 38.77 2.69
6322 6892 6.719365 ACGACTTTCATGAAGACTTTGAAAG 58.281 36.000 26.55 26.55 46.21 2.62
6327 6897 8.557869 CTTTCATGAAGACTTTGAAAGTGAAG 57.442 34.615 23.01 8.21 43.03 3.02
6328 6898 7.864108 TTCATGAAGACTTTGAAAGTGAAGA 57.136 32.000 16.25 2.23 43.03 2.87
6329 6899 7.864108 TCATGAAGACTTTGAAAGTGAAGAA 57.136 32.000 16.25 0.00 43.03 2.52
6330 6900 8.279970 TCATGAAGACTTTGAAAGTGAAGAAA 57.720 30.769 16.25 0.00 43.03 2.52
6331 6901 8.906867 TCATGAAGACTTTGAAAGTGAAGAAAT 58.093 29.630 16.25 0.00 43.03 2.17
6332 6902 9.525409 CATGAAGACTTTGAAAGTGAAGAAATT 57.475 29.630 16.25 0.00 43.03 1.82
6333 6903 8.915871 TGAAGACTTTGAAAGTGAAGAAATTG 57.084 30.769 16.25 0.00 43.03 2.32
6334 6904 7.975616 TGAAGACTTTGAAAGTGAAGAAATTGG 59.024 33.333 16.25 0.00 43.03 3.16
6335 6905 7.410120 AGACTTTGAAAGTGAAGAAATTGGT 57.590 32.000 16.25 0.00 43.03 3.67
6336 6906 7.260603 AGACTTTGAAAGTGAAGAAATTGGTG 58.739 34.615 16.25 0.00 43.03 4.17
6337 6907 6.935167 ACTTTGAAAGTGAAGAAATTGGTGT 58.065 32.000 10.18 0.00 41.01 4.16
6338 6908 8.062065 ACTTTGAAAGTGAAGAAATTGGTGTA 57.938 30.769 10.18 0.00 41.01 2.90
6339 6909 8.695456 ACTTTGAAAGTGAAGAAATTGGTGTAT 58.305 29.630 10.18 0.00 41.01 2.29
6340 6910 9.185192 CTTTGAAAGTGAAGAAATTGGTGTATC 57.815 33.333 0.00 0.00 0.00 2.24
6341 6911 7.214467 TGAAAGTGAAGAAATTGGTGTATCC 57.786 36.000 0.00 0.00 0.00 2.59
6342 6912 5.880054 AAGTGAAGAAATTGGTGTATCCG 57.120 39.130 0.00 0.00 39.52 4.18
6343 6913 4.906618 AGTGAAGAAATTGGTGTATCCGT 58.093 39.130 0.00 0.00 39.52 4.69
6344 6914 4.695455 AGTGAAGAAATTGGTGTATCCGTG 59.305 41.667 0.00 0.00 39.52 4.94
6345 6915 4.693566 GTGAAGAAATTGGTGTATCCGTGA 59.306 41.667 0.00 0.00 39.52 4.35
6346 6916 5.180492 GTGAAGAAATTGGTGTATCCGTGAA 59.820 40.000 0.00 0.00 39.52 3.18
6347 6917 5.411361 TGAAGAAATTGGTGTATCCGTGAAG 59.589 40.000 0.00 0.00 39.52 3.02
6348 6918 5.160607 AGAAATTGGTGTATCCGTGAAGA 57.839 39.130 0.00 0.00 39.52 2.87
6349 6919 4.935808 AGAAATTGGTGTATCCGTGAAGAC 59.064 41.667 0.00 0.00 39.52 3.01
6350 6920 4.553330 AATTGGTGTATCCGTGAAGACT 57.447 40.909 0.00 0.00 39.52 3.24
6351 6921 4.553330 ATTGGTGTATCCGTGAAGACTT 57.447 40.909 0.00 0.00 39.52 3.01
6352 6922 3.313012 TGGTGTATCCGTGAAGACTTG 57.687 47.619 0.00 0.00 39.52 3.16
6353 6923 2.894765 TGGTGTATCCGTGAAGACTTGA 59.105 45.455 0.00 0.00 39.52 3.02
6354 6924 3.513912 TGGTGTATCCGTGAAGACTTGAT 59.486 43.478 0.00 0.00 39.52 2.57
6355 6925 4.707934 TGGTGTATCCGTGAAGACTTGATA 59.292 41.667 0.00 0.00 39.52 2.15
6356 6926 5.362717 TGGTGTATCCGTGAAGACTTGATAT 59.637 40.000 0.00 0.00 39.52 1.63
6357 6927 6.127168 TGGTGTATCCGTGAAGACTTGATATT 60.127 38.462 0.00 0.00 39.52 1.28
6358 6928 6.421202 GGTGTATCCGTGAAGACTTGATATTC 59.579 42.308 0.00 0.00 0.00 1.75
6359 6929 6.978659 GTGTATCCGTGAAGACTTGATATTCA 59.021 38.462 0.00 0.00 36.17 2.57
6360 6930 7.653713 GTGTATCCGTGAAGACTTGATATTCAT 59.346 37.037 0.00 0.00 40.54 2.57
6361 6931 7.653311 TGTATCCGTGAAGACTTGATATTCATG 59.347 37.037 0.00 0.00 40.54 3.07
6362 6932 4.811024 TCCGTGAAGACTTGATATTCATGC 59.189 41.667 0.00 0.00 42.05 4.06
6363 6933 4.318333 CCGTGAAGACTTGATATTCATGCG 60.318 45.833 0.00 0.00 42.05 4.73
6364 6934 4.504097 CGTGAAGACTTGATATTCATGCGA 59.496 41.667 0.00 0.00 40.54 5.10
6365 6935 5.332130 CGTGAAGACTTGATATTCATGCGAG 60.332 44.000 0.00 0.00 40.54 5.03
6366 6936 5.050499 GTGAAGACTTGATATTCATGCGAGG 60.050 44.000 0.00 0.00 40.54 4.63
6367 6937 4.944619 AGACTTGATATTCATGCGAGGA 57.055 40.909 0.00 0.00 0.00 3.71
6368 6938 5.282055 AGACTTGATATTCATGCGAGGAA 57.718 39.130 0.00 0.00 0.00 3.36
6369 6939 5.862845 AGACTTGATATTCATGCGAGGAAT 58.137 37.500 0.00 3.33 38.46 3.01
6370 6940 6.997655 AGACTTGATATTCATGCGAGGAATA 58.002 36.000 6.89 6.89 40.42 1.75
6371 6941 7.619050 AGACTTGATATTCATGCGAGGAATAT 58.381 34.615 13.79 13.79 45.74 1.28
6372 6942 7.548427 AGACTTGATATTCATGCGAGGAATATG 59.452 37.037 17.04 9.12 44.08 1.78
6373 6943 7.389232 ACTTGATATTCATGCGAGGAATATGA 58.611 34.615 17.04 9.65 44.08 2.15
6374 6944 7.879677 ACTTGATATTCATGCGAGGAATATGAA 59.120 33.333 17.04 14.62 44.08 2.57
6375 6945 7.838771 TGATATTCATGCGAGGAATATGAAG 57.161 36.000 17.04 0.00 44.08 3.02
6376 6946 6.314648 TGATATTCATGCGAGGAATATGAAGC 59.685 38.462 17.04 7.60 44.08 3.86
6377 6947 3.758755 TCATGCGAGGAATATGAAGCT 57.241 42.857 0.00 0.00 0.00 3.74
6378 6948 4.077300 TCATGCGAGGAATATGAAGCTT 57.923 40.909 0.00 0.00 0.00 3.74
6379 6949 3.811497 TCATGCGAGGAATATGAAGCTTG 59.189 43.478 2.10 0.00 0.00 4.01
6380 6950 3.541996 TGCGAGGAATATGAAGCTTGA 57.458 42.857 2.10 0.00 0.00 3.02
6381 6951 3.872696 TGCGAGGAATATGAAGCTTGAA 58.127 40.909 2.10 0.00 0.00 2.69
6382 6952 3.873361 TGCGAGGAATATGAAGCTTGAAG 59.127 43.478 2.10 0.00 0.00 3.02
6383 6953 4.122776 GCGAGGAATATGAAGCTTGAAGA 58.877 43.478 2.10 0.00 0.00 2.87
6384 6954 4.025313 GCGAGGAATATGAAGCTTGAAGAC 60.025 45.833 2.10 0.00 0.00 3.01
6385 6955 5.355596 CGAGGAATATGAAGCTTGAAGACT 58.644 41.667 2.10 0.00 0.00 3.24
6386 6956 5.814705 CGAGGAATATGAAGCTTGAAGACTT 59.185 40.000 2.10 0.00 0.00 3.01
6387 6957 6.314896 CGAGGAATATGAAGCTTGAAGACTTT 59.685 38.462 2.10 0.00 0.00 2.66
6388 6958 7.465245 CGAGGAATATGAAGCTTGAAGACTTTC 60.465 40.741 2.10 0.00 0.00 2.62
6389 6959 6.314896 AGGAATATGAAGCTTGAAGACTTTCG 59.685 38.462 2.10 0.00 36.04 3.46
6390 6960 6.092807 GGAATATGAAGCTTGAAGACTTTCGT 59.907 38.462 2.10 0.91 36.04 3.85
6391 6961 7.361286 GGAATATGAAGCTTGAAGACTTTCGTT 60.361 37.037 2.10 0.00 36.04 3.85
6392 6962 5.757850 ATGAAGCTTGAAGACTTTCGTTT 57.242 34.783 2.10 0.00 36.04 3.60
6393 6963 5.560966 TGAAGCTTGAAGACTTTCGTTTT 57.439 34.783 2.10 0.00 36.04 2.43
6394 6964 5.569413 TGAAGCTTGAAGACTTTCGTTTTC 58.431 37.500 2.10 0.00 36.04 2.29
6395 6965 5.123186 TGAAGCTTGAAGACTTTCGTTTTCA 59.877 36.000 2.10 0.00 41.02 2.69
6396 6966 5.757850 AGCTTGAAGACTTTCGTTTTCAT 57.242 34.783 0.00 0.00 41.91 2.57
6397 6967 6.861065 AGCTTGAAGACTTTCGTTTTCATA 57.139 33.333 0.00 0.00 41.91 2.15
6398 6968 6.892691 AGCTTGAAGACTTTCGTTTTCATAG 58.107 36.000 0.00 3.05 41.91 2.23
6399 6969 6.483640 AGCTTGAAGACTTTCGTTTTCATAGT 59.516 34.615 0.00 0.00 41.91 2.12
6400 6970 7.012421 AGCTTGAAGACTTTCGTTTTCATAGTT 59.988 33.333 0.00 0.00 41.91 2.24
6401 6971 7.644157 GCTTGAAGACTTTCGTTTTCATAGTTT 59.356 33.333 0.00 0.00 41.91 2.66
6402 6972 9.503427 CTTGAAGACTTTCGTTTTCATAGTTTT 57.497 29.630 0.26 0.00 41.91 2.43
6403 6973 8.835467 TGAAGACTTTCGTTTTCATAGTTTTG 57.165 30.769 0.00 0.00 38.77 2.44
6404 6974 8.455682 TGAAGACTTTCGTTTTCATAGTTTTGT 58.544 29.630 0.00 0.00 38.77 2.83
6405 6975 9.285770 GAAGACTTTCGTTTTCATAGTTTTGTT 57.714 29.630 0.00 0.00 35.11 2.83
6406 6976 9.634163 AAGACTTTCGTTTTCATAGTTTTGTTT 57.366 25.926 0.00 0.00 0.00 2.83
6407 6977 9.634163 AGACTTTCGTTTTCATAGTTTTGTTTT 57.366 25.926 0.00 0.00 0.00 2.43
6412 6982 9.849166 TTCGTTTTCATAGTTTTGTTTTTCTCT 57.151 25.926 0.00 0.00 0.00 3.10
6413 6983 9.849166 TCGTTTTCATAGTTTTGTTTTTCTCTT 57.151 25.926 0.00 0.00 0.00 2.85
6422 6992 8.972262 AGTTTTGTTTTTCTCTTTCTTGAGTC 57.028 30.769 0.00 0.00 35.68 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.030936 GCGCAAATTGTCCTAGAGAATTTC 58.969 41.667 0.30 5.11 41.39 2.17
3 4 3.609853 TGCGCAAATTGTCCTAGAGAAT 58.390 40.909 8.16 0.00 0.00 2.40
4 5 3.052455 TGCGCAAATTGTCCTAGAGAA 57.948 42.857 8.16 0.00 0.00 2.87
5 6 2.760634 TGCGCAAATTGTCCTAGAGA 57.239 45.000 8.16 0.00 0.00 3.10
6 7 3.829886 TTTGCGCAAATTGTCCTAGAG 57.170 42.857 30.63 0.00 0.00 2.43
7 8 4.782019 AATTTGCGCAAATTGTCCTAGA 57.218 36.364 43.96 20.81 45.99 2.43
19 20 9.632807 ACTAAAAATATTACTTGAATTTGCGCA 57.367 25.926 5.66 5.66 0.00 6.09
197 198 8.424274 TTTCTTTTTCCTCTTCTTTGAATTGC 57.576 30.769 0.00 0.00 0.00 3.56
377 380 8.103305 TGGATGTTGCTCTCTCTTTTATTAGTT 58.897 33.333 0.00 0.00 0.00 2.24
430 437 7.087409 TGAATACTTCATTATGGTGCTGTTG 57.913 36.000 0.00 0.00 34.08 3.33
565 580 5.213868 AGTGGACTAGGCCTATATAGCAT 57.786 43.478 17.75 1.02 0.00 3.79
566 581 4.676799 AGTGGACTAGGCCTATATAGCA 57.323 45.455 17.75 0.00 0.00 3.49
567 582 6.664384 ACTAAAGTGGACTAGGCCTATATAGC 59.336 42.308 17.75 4.38 0.00 2.97
568 583 8.653036 AACTAAAGTGGACTAGGCCTATATAG 57.347 38.462 17.75 14.96 0.00 1.31
722 743 2.279517 GGCATCCGCTCCACTACG 60.280 66.667 0.00 0.00 38.60 3.51
794 815 5.260027 CTTTATATAAAGGCGTACGTGGC 57.740 43.478 22.53 0.71 39.12 5.01
831 852 3.096092 GAGTGAGAATGGAGAGGTGTCT 58.904 50.000 0.00 0.00 34.86 3.41
928 953 4.225340 CGACTCTCGACCGGAGCG 62.225 72.222 9.46 12.28 43.74 5.03
1101 1126 3.885901 GGCTGAAAATAGGGAGGATCAAC 59.114 47.826 0.00 0.00 36.25 3.18
1122 1157 8.261522 ACTAAGCTTAAATAGAAGAGAACTGGG 58.738 37.037 7.74 0.00 0.00 4.45
1153 1191 4.126437 CAGATCCCAACGTGCATATGTAA 58.874 43.478 4.29 0.00 0.00 2.41
1222 1265 1.021390 CGCTCCAGTGGACCATCAAC 61.021 60.000 8.12 0.00 0.00 3.18
1334 1378 1.404181 GCATGCCTCAACTAGACGTGA 60.404 52.381 6.36 0.00 0.00 4.35
1352 1396 3.419943 TGTGATGAAGCCAGTTATTGCA 58.580 40.909 0.00 0.00 0.00 4.08
1353 1397 3.441572 ACTGTGATGAAGCCAGTTATTGC 59.558 43.478 0.00 0.00 36.03 3.56
1354 1398 4.142534 CCACTGTGATGAAGCCAGTTATTG 60.143 45.833 9.86 0.00 37.34 1.90
1355 1399 4.012374 CCACTGTGATGAAGCCAGTTATT 58.988 43.478 9.86 0.00 37.34 1.40
1370 1414 5.347342 TGATTTAACTTTTGTGCCACTGTG 58.653 37.500 0.00 0.00 0.00 3.66
1399 1443 7.712264 TTGTAAATTTTGCAGATTGGAACTG 57.288 32.000 0.00 0.00 38.27 3.16
1416 1461 8.095169 ACTCTCTAGGTCACGAATTTTGTAAAT 58.905 33.333 0.00 0.00 0.00 1.40
1420 1465 5.470047 ACTCTCTAGGTCACGAATTTTGT 57.530 39.130 0.00 0.00 0.00 2.83
1425 1470 3.447944 GGGAAACTCTCTAGGTCACGAAT 59.552 47.826 0.00 0.00 0.00 3.34
1426 1471 2.824341 GGGAAACTCTCTAGGTCACGAA 59.176 50.000 0.00 0.00 0.00 3.85
1433 1478 9.163899 GTAATACAAAAAGGGAAACTCTCTAGG 57.836 37.037 0.00 0.00 0.00 3.02
1445 1490 9.840427 CAGAATTACAGTGTAATACAAAAAGGG 57.160 33.333 25.11 7.40 0.00 3.95
1470 1515 4.382291 ACACTACAAACGCATAAACCTCA 58.618 39.130 0.00 0.00 0.00 3.86
1502 1547 3.534160 CGACAAGTTCGGTGGTCG 58.466 61.111 0.00 0.00 44.60 4.79
1513 1558 4.651994 AGCATATTCTTTTTCGCGACAAG 58.348 39.130 9.15 14.69 0.00 3.16
1580 1625 2.634982 TCTTATTACGCGTTCCACGT 57.365 45.000 20.78 0.00 44.73 4.49
1618 1664 8.544687 TGTATCATATGGATAGCTAGAGCAAT 57.455 34.615 2.13 0.00 39.13 3.56
1762 1846 4.675510 ACTGTTTCAACATGCAAGAAGTG 58.324 39.130 0.00 0.00 38.41 3.16
1767 1851 4.736793 GTCAAGACTGTTTCAACATGCAAG 59.263 41.667 0.00 0.00 38.41 4.01
1768 1852 4.157472 TGTCAAGACTGTTTCAACATGCAA 59.843 37.500 0.00 0.00 38.41 4.08
1794 1897 5.166398 CCCTAACCTAACAGTAAACACTCG 58.834 45.833 0.00 0.00 0.00 4.18
1886 2036 8.646900 ACTCCCTCTGTTCTAAATTAGATGATC 58.353 37.037 3.28 0.00 34.22 2.92
1887 2037 8.560124 ACTCCCTCTGTTCTAAATTAGATGAT 57.440 34.615 3.28 0.00 34.22 2.45
1895 2045 5.604650 CCCATCTACTCCCTCTGTTCTAAAT 59.395 44.000 0.00 0.00 0.00 1.40
1899 2049 2.316372 ACCCATCTACTCCCTCTGTTCT 59.684 50.000 0.00 0.00 0.00 3.01
1900 2050 2.753247 ACCCATCTACTCCCTCTGTTC 58.247 52.381 0.00 0.00 0.00 3.18
1904 2054 4.901785 TTCTTACCCATCTACTCCCTCT 57.098 45.455 0.00 0.00 0.00 3.69
1985 2138 3.378512 TGCTAGAGGGAAGATGACATGT 58.621 45.455 0.00 0.00 0.00 3.21
2021 2174 2.839975 TCTGTTGTGACAAATACGGCA 58.160 42.857 0.00 0.00 34.85 5.69
2049 2204 2.178580 GGAATTTGGGATGCAACAGGA 58.821 47.619 0.00 0.00 0.00 3.86
2083 2238 6.292488 CGAATCAAGACAATTTTGCAGCTTTT 60.292 34.615 0.00 0.00 0.00 2.27
2087 2242 3.181537 GCGAATCAAGACAATTTTGCAGC 60.182 43.478 0.00 0.00 0.00 5.25
2098 2253 8.682128 TGGTTAAATTTTATGCGAATCAAGAC 57.318 30.769 0.00 0.00 0.00 3.01
2099 2254 9.698309 TTTGGTTAAATTTTATGCGAATCAAGA 57.302 25.926 0.00 0.00 0.00 3.02
2103 2260 8.474006 AGGTTTGGTTAAATTTTATGCGAATC 57.526 30.769 0.00 0.00 0.00 2.52
2140 2325 2.879103 TTTTAAGGGAGGTCCAGCAG 57.121 50.000 0.00 0.00 38.24 4.24
2146 2331 6.894339 TTCAGTGAATTTTTAAGGGAGGTC 57.106 37.500 0.08 0.00 0.00 3.85
2157 2342 5.929992 CCATGTGCAGAATTCAGTGAATTTT 59.070 36.000 27.48 20.98 41.56 1.82
2159 2344 4.525487 ACCATGTGCAGAATTCAGTGAATT 59.475 37.500 27.23 27.23 43.77 2.17
2161 2346 3.489355 ACCATGTGCAGAATTCAGTGAA 58.511 40.909 8.27 8.27 0.00 3.18
2162 2347 3.076621 GACCATGTGCAGAATTCAGTGA 58.923 45.455 8.44 0.00 0.00 3.41
2169 2380 5.716228 TGGAATTTTAGACCATGTGCAGAAT 59.284 36.000 0.00 0.00 0.00 2.40
2170 2381 5.076182 TGGAATTTTAGACCATGTGCAGAA 58.924 37.500 0.00 0.00 0.00 3.02
2173 2384 3.193267 GCTGGAATTTTAGACCATGTGCA 59.807 43.478 0.00 0.00 33.08 4.57
2187 2398 4.016444 ACACATTCGTATTGGCTGGAATT 58.984 39.130 0.00 0.00 0.00 2.17
2202 2420 7.122650 TCCCCTGATTTTTATCAAGACACATTC 59.877 37.037 0.00 0.00 0.00 2.67
2240 2458 6.851222 TGTGTCTGCTTCTTCTTTTCTTAG 57.149 37.500 0.00 0.00 0.00 2.18
2242 2460 6.515272 TTTGTGTCTGCTTCTTCTTTTCTT 57.485 33.333 0.00 0.00 0.00 2.52
2243 2461 6.705863 ATTTGTGTCTGCTTCTTCTTTTCT 57.294 33.333 0.00 0.00 0.00 2.52
2244 2462 8.292448 TCATATTTGTGTCTGCTTCTTCTTTTC 58.708 33.333 0.00 0.00 0.00 2.29
2245 2463 8.169977 TCATATTTGTGTCTGCTTCTTCTTTT 57.830 30.769 0.00 0.00 0.00 2.27
2247 2465 6.939163 ACTCATATTTGTGTCTGCTTCTTCTT 59.061 34.615 0.00 0.00 0.00 2.52
2252 2471 5.391310 CCACACTCATATTTGTGTCTGCTTC 60.391 44.000 7.34 0.00 44.43 3.86
2276 2495 2.688507 TGACTTCACGAAAGGAGCATC 58.311 47.619 0.00 0.00 39.47 3.91
2282 2501 0.865769 CGGGTTGACTTCACGAAAGG 59.134 55.000 0.00 0.00 39.47 3.11
2283 2502 0.865769 CCGGGTTGACTTCACGAAAG 59.134 55.000 0.00 0.00 41.08 2.62
2300 2519 5.112937 CGTCGTTTTTGAACAAAATAGACCG 59.887 40.000 24.33 19.60 40.19 4.79
2482 2704 5.767816 ACACTTCGGCAGTTTAGAATTTT 57.232 34.783 0.00 0.00 30.92 1.82
2595 2817 2.455674 TGCACGCTCACTATCAAGTT 57.544 45.000 0.00 0.00 31.97 2.66
2609 2834 7.851822 AGTTGTAATTTTCTAACATTGCACG 57.148 32.000 0.00 0.00 0.00 5.34
2687 2913 6.128172 ACAGTCGCTCTATTTTTCCTTTGATG 60.128 38.462 0.00 0.00 0.00 3.07
2688 2914 5.940470 ACAGTCGCTCTATTTTTCCTTTGAT 59.060 36.000 0.00 0.00 0.00 2.57
2701 2928 2.224185 TGCTTCCAAAACAGTCGCTCTA 60.224 45.455 0.00 0.00 0.00 2.43
2719 2946 4.142600 GCTCGAAACAACAATATTCCTGCT 60.143 41.667 0.00 0.00 0.00 4.24
2739 2966 1.602851 TCTCACGCGGATAAGTAGCTC 59.397 52.381 12.47 0.00 0.00 4.09
2740 2967 1.676746 TCTCACGCGGATAAGTAGCT 58.323 50.000 12.47 0.00 0.00 3.32
2769 2996 7.370383 TCTCTGCAATTAATGTTTTCTTGGTC 58.630 34.615 0.00 0.00 0.00 4.02
2805 3032 3.326297 AGGGGATGCTTCAGCTATAGAAC 59.674 47.826 3.21 0.00 42.66 3.01
2876 3107 8.393366 CAAGAAGACATTGATAACATGACGAAT 58.607 33.333 0.00 0.00 0.00 3.34
2899 3130 2.423373 CCATATGGACACTTCCCCCAAG 60.423 54.545 17.49 0.00 42.01 3.61
2911 3144 9.312797 AATTGGCCAATTGTGATCCATATGGAC 62.313 40.741 37.02 19.29 42.07 4.02
2923 3156 5.303971 TGAAAAGGTAATTGGCCAATTGTG 58.696 37.500 41.35 0.00 40.83 3.33
2980 3250 5.381174 TCCAGAATCACAATCTTTGCTTG 57.619 39.130 0.00 0.00 0.00 4.01
3019 3289 9.097257 CATATTATTTTGCGGGAGAACATTTTT 57.903 29.630 0.00 0.00 0.00 1.94
3044 3399 8.270080 TGTATCCGTATGCTAAAACATTTTCA 57.730 30.769 0.00 0.00 0.00 2.69
3064 3424 4.992688 TCCGCCATTGTTCAAATTGTATC 58.007 39.130 0.00 0.00 0.00 2.24
3065 3425 4.677779 GCTCCGCCATTGTTCAAATTGTAT 60.678 41.667 0.00 0.00 0.00 2.29
3066 3426 3.366883 GCTCCGCCATTGTTCAAATTGTA 60.367 43.478 0.00 0.00 0.00 2.41
3067 3427 2.610232 GCTCCGCCATTGTTCAAATTGT 60.610 45.455 0.00 0.00 0.00 2.71
3068 3428 1.994779 GCTCCGCCATTGTTCAAATTG 59.005 47.619 0.00 0.00 0.00 2.32
3499 3859 3.493475 AAGTCTAACCTAAGCCTCCCT 57.507 47.619 0.00 0.00 0.00 4.20
3500 3860 4.571369 AAAAGTCTAACCTAAGCCTCCC 57.429 45.455 0.00 0.00 0.00 4.30
3522 3882 1.734655 TGGGGGCCAAATGCTAAAAA 58.265 45.000 4.39 0.00 40.92 1.94
3523 3883 1.734655 TTGGGGGCCAAATGCTAAAA 58.265 45.000 4.39 0.00 40.92 1.52
3524 3884 1.734655 TTTGGGGGCCAAATGCTAAA 58.265 45.000 4.39 0.00 46.92 1.85
3525 3885 3.483352 TTTGGGGGCCAAATGCTAA 57.517 47.368 4.39 0.00 46.92 3.09
3532 3892 1.218196 TCTTTAGTGTTTGGGGGCCAA 59.782 47.619 4.39 0.00 42.29 4.52
3533 3893 0.854218 TCTTTAGTGTTTGGGGGCCA 59.146 50.000 4.39 0.00 0.00 5.36
3534 3894 2.231716 ATCTTTAGTGTTTGGGGGCC 57.768 50.000 0.00 0.00 0.00 5.80
3535 3895 4.617253 AAAATCTTTAGTGTTTGGGGGC 57.383 40.909 0.00 0.00 0.00 5.80
3536 3896 4.754618 GCAAAAATCTTTAGTGTTTGGGGG 59.245 41.667 0.00 0.00 31.36 5.40
3537 3897 5.610398 AGCAAAAATCTTTAGTGTTTGGGG 58.390 37.500 0.00 0.00 31.36 4.96
3538 3898 6.074356 CGAAGCAAAAATCTTTAGTGTTTGGG 60.074 38.462 0.00 0.00 31.36 4.12
3539 3899 6.866347 CGAAGCAAAAATCTTTAGTGTTTGG 58.134 36.000 0.00 0.00 31.36 3.28
3559 3919 0.462759 GAAGATCACTGGGGGCGAAG 60.463 60.000 0.00 0.00 0.00 3.79
3560 3920 1.602237 GAAGATCACTGGGGGCGAA 59.398 57.895 0.00 0.00 0.00 4.70
3561 3921 2.721167 CGAAGATCACTGGGGGCGA 61.721 63.158 0.00 0.00 0.00 5.54
3562 3922 2.202932 CGAAGATCACTGGGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
3563 3923 2.190578 CCGAAGATCACTGGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
3564 3924 1.048724 TAGCCGAAGATCACTGGGGG 61.049 60.000 0.00 0.00 0.00 5.40
3565 3925 0.390860 CTAGCCGAAGATCACTGGGG 59.609 60.000 0.00 0.00 0.00 4.96
3566 3926 0.249657 GCTAGCCGAAGATCACTGGG 60.250 60.000 2.29 0.00 0.00 4.45
3567 3927 0.749649 AGCTAGCCGAAGATCACTGG 59.250 55.000 12.13 0.00 0.00 4.00
3568 3928 1.269517 GGAGCTAGCCGAAGATCACTG 60.270 57.143 12.13 0.00 33.50 3.66
3569 3929 1.036707 GGAGCTAGCCGAAGATCACT 58.963 55.000 12.13 0.00 33.50 3.41
3570 3930 3.579066 GGAGCTAGCCGAAGATCAC 57.421 57.895 12.13 0.00 33.50 3.06
3585 3945 3.855689 ATTTCAAATTCAGTGGCGGAG 57.144 42.857 0.00 0.00 0.00 4.63
3586 3946 6.375736 TGTTATATTTCAAATTCAGTGGCGGA 59.624 34.615 0.00 0.00 0.00 5.54
3587 3947 6.559810 TGTTATATTTCAAATTCAGTGGCGG 58.440 36.000 0.00 0.00 0.00 6.13
3588 3948 8.633075 AATGTTATATTTCAAATTCAGTGGCG 57.367 30.769 0.00 0.00 0.00 5.69
3592 3952 9.801873 CGGGAAATGTTATATTTCAAATTCAGT 57.198 29.630 14.57 0.00 39.18 3.41
3593 3953 8.755018 GCGGGAAATGTTATATTTCAAATTCAG 58.245 33.333 14.57 1.72 39.18 3.02
3594 3954 7.708752 GGCGGGAAATGTTATATTTCAAATTCA 59.291 33.333 14.57 0.00 39.18 2.57
3595 3955 7.708752 TGGCGGGAAATGTTATATTTCAAATTC 59.291 33.333 14.57 0.00 39.18 2.17
3624 3984 1.664965 AGAAGTCGTTCGCTGCACC 60.665 57.895 0.00 0.00 37.79 5.01
3625 3985 1.488957 CAGAAGTCGTTCGCTGCAC 59.511 57.895 0.00 0.00 37.79 4.57
3683 4043 1.961180 GCTGCAGGGTGAGGTACGAT 61.961 60.000 17.12 0.00 0.00 3.73
3935 4304 0.398522 TGGCGATCTGGTAGGTGGAT 60.399 55.000 0.00 0.00 0.00 3.41
4004 4373 2.990967 AACGCCATGTTGCAGGGG 60.991 61.111 5.36 5.36 40.00 4.79
4220 4589 4.063967 ACGAAGCCGATCACCGCA 62.064 61.111 0.00 0.00 39.50 5.69
4223 4592 1.810030 GGACACGAAGCCGATCACC 60.810 63.158 0.00 0.00 39.50 4.02
4253 4622 1.873591 CCAGGCGGCATCTTAACATAC 59.126 52.381 13.08 0.00 0.00 2.39
4429 4801 2.437897 CCACAAGGAGGGCAGCTT 59.562 61.111 0.00 0.00 36.89 3.74
4436 4808 1.809567 GCCAGTTTGCCACAAGGAGG 61.810 60.000 0.00 0.00 36.89 4.30
4506 4889 7.496263 GGAACCTTATCATTCAAGAACTACTCC 59.504 40.741 0.00 0.00 0.00 3.85
4507 4890 8.261522 AGGAACCTTATCATTCAAGAACTACTC 58.738 37.037 0.00 0.00 0.00 2.59
4508 4891 8.152023 AGGAACCTTATCATTCAAGAACTACT 57.848 34.615 0.00 0.00 0.00 2.57
4509 4892 8.669243 CAAGGAACCTTATCATTCAAGAACTAC 58.331 37.037 5.75 0.00 34.50 2.73
4532 4915 0.392998 ACTATGGCCGCCTTGTCAAG 60.393 55.000 11.61 5.53 0.00 3.02
4861 5244 3.253061 TGGGTGATGCCGTTGGGA 61.253 61.111 0.00 0.00 38.44 4.37
4948 5331 2.656069 GGCCACTGACTTCCGCCTA 61.656 63.158 0.00 0.00 36.65 3.93
5176 5559 1.672356 GATGGTCACCAGCAGCGTT 60.672 57.895 7.38 0.00 40.02 4.84
5257 5640 3.808726 CGACGAGCCAGTAGTAGTTATCT 59.191 47.826 0.00 0.00 0.00 1.98
5398 5781 4.390264 ACTTGTAGCTTTCACCCTTCTTC 58.610 43.478 0.00 0.00 0.00 2.87
5409 5792 6.090898 CACGCATTCTAGTTACTTGTAGCTTT 59.909 38.462 0.00 0.00 0.00 3.51
5442 5825 7.418483 CCCAAATATTATTCCGTCCCAAATGTT 60.418 37.037 0.00 0.00 0.00 2.71
5597 6020 3.627577 GCTATGTTGACCGTTGGATTGAT 59.372 43.478 0.00 0.00 0.00 2.57
5634 6059 3.694535 AATCTCGACTATGACGTGGAC 57.305 47.619 0.00 0.00 0.00 4.02
5675 6125 5.571784 ACCGATCTATAAAGTTGTGTCGA 57.428 39.130 0.00 0.00 0.00 4.20
5676 6126 6.642683 AAACCGATCTATAAAGTTGTGTCG 57.357 37.500 0.00 0.00 0.00 4.35
5677 6127 8.500773 TGAAAAACCGATCTATAAAGTTGTGTC 58.499 33.333 0.00 0.00 0.00 3.67
5678 6128 8.385898 TGAAAAACCGATCTATAAAGTTGTGT 57.614 30.769 0.00 0.00 0.00 3.72
5679 6129 9.113876 GTTGAAAAACCGATCTATAAAGTTGTG 57.886 33.333 0.00 0.00 0.00 3.33
5680 6130 8.842280 TGTTGAAAAACCGATCTATAAAGTTGT 58.158 29.630 0.00 0.00 0.00 3.32
5681 6131 9.113876 GTGTTGAAAAACCGATCTATAAAGTTG 57.886 33.333 0.00 0.00 0.00 3.16
5682 6132 8.842280 TGTGTTGAAAAACCGATCTATAAAGTT 58.158 29.630 0.00 0.00 0.00 2.66
5683 6133 8.385898 TGTGTTGAAAAACCGATCTATAAAGT 57.614 30.769 0.00 0.00 0.00 2.66
5684 6134 9.490663 GATGTGTTGAAAAACCGATCTATAAAG 57.509 33.333 0.00 0.00 0.00 1.85
5685 6135 9.004717 TGATGTGTTGAAAAACCGATCTATAAA 57.995 29.630 0.00 0.00 0.00 1.40
5686 6136 8.554835 TGATGTGTTGAAAAACCGATCTATAA 57.445 30.769 0.00 0.00 0.00 0.98
5687 6137 8.731275 ATGATGTGTTGAAAAACCGATCTATA 57.269 30.769 0.00 0.00 0.00 1.31
5688 6138 7.630242 ATGATGTGTTGAAAAACCGATCTAT 57.370 32.000 0.00 0.00 0.00 1.98
5689 6139 8.554835 TTATGATGTGTTGAAAAACCGATCTA 57.445 30.769 0.00 0.00 0.00 1.98
5690 6140 5.964958 ATGATGTGTTGAAAAACCGATCT 57.035 34.783 0.00 0.00 0.00 2.75
5691 6141 8.687824 ATTTATGATGTGTTGAAAAACCGATC 57.312 30.769 0.00 0.00 0.00 3.69
5692 6142 9.567848 GTATTTATGATGTGTTGAAAAACCGAT 57.432 29.630 0.00 0.00 0.00 4.18
5693 6143 8.788806 AGTATTTATGATGTGTTGAAAAACCGA 58.211 29.630 0.00 0.00 0.00 4.69
5694 6144 8.964420 AGTATTTATGATGTGTTGAAAAACCG 57.036 30.769 0.00 0.00 0.00 4.44
5703 6153 9.319143 GTGCTAGAGAAGTATTTATGATGTGTT 57.681 33.333 0.00 0.00 0.00 3.32
5714 6164 5.211973 TCCATCCAGTGCTAGAGAAGTATT 58.788 41.667 0.00 0.00 0.00 1.89
5729 6179 0.888619 GCATGCCATGATCCATCCAG 59.111 55.000 9.33 0.00 0.00 3.86
5732 6182 1.199327 CGAAGCATGCCATGATCCATC 59.801 52.381 15.66 0.00 0.00 3.51
5741 6310 2.042259 CAAGCCTCGAAGCATGCCA 61.042 57.895 15.66 0.00 34.23 4.92
5755 6324 2.691011 TCCCACCTTAACAACAACAAGC 59.309 45.455 0.00 0.00 0.00 4.01
5839 6408 6.267699 ACGATGAGGAGAATATTCACCACATA 59.732 38.462 30.25 16.84 44.39 2.29
5840 6409 5.070981 ACGATGAGGAGAATATTCACCACAT 59.929 40.000 30.46 30.46 45.95 3.21
5861 6430 1.437397 ACCTTTACCCCTCCAAACGA 58.563 50.000 0.00 0.00 0.00 3.85
5895 6465 7.500227 TCCTCTTCACTGATTATTTTGGCATAG 59.500 37.037 0.00 0.00 0.00 2.23
5912 6482 6.495706 ACGAATGAAAAGTTTTCCTCTTCAC 58.504 36.000 22.47 8.54 0.00 3.18
5946 6516 5.438761 AGTGCAAGAGACCAAATTACAAC 57.561 39.130 0.00 0.00 0.00 3.32
5957 6527 5.539048 TCAAAAGGTAGTAGTGCAAGAGAC 58.461 41.667 0.00 0.00 0.00 3.36
6053 6623 8.825667 AATTCACACAACTTTGTAAACAAACT 57.174 26.923 4.19 0.00 40.55 2.66
6132 6702 4.696479 AATCACTAAGGGGCACTAGATG 57.304 45.455 0.00 0.00 0.00 2.90
6133 6703 5.440610 CAAAATCACTAAGGGGCACTAGAT 58.559 41.667 0.00 0.00 0.00 1.98
6134 6704 4.324254 CCAAAATCACTAAGGGGCACTAGA 60.324 45.833 0.00 0.00 0.00 2.43
6135 6705 3.947834 CCAAAATCACTAAGGGGCACTAG 59.052 47.826 0.00 0.00 0.00 2.57
6136 6706 3.332485 ACCAAAATCACTAAGGGGCACTA 59.668 43.478 0.00 0.00 0.00 2.74
6137 6707 2.110011 ACCAAAATCACTAAGGGGCACT 59.890 45.455 0.00 0.00 0.00 4.40
6138 6708 2.231235 CACCAAAATCACTAAGGGGCAC 59.769 50.000 0.00 0.00 0.00 5.01
6139 6709 2.158385 ACACCAAAATCACTAAGGGGCA 60.158 45.455 0.00 0.00 0.00 5.36
6140 6710 2.525368 ACACCAAAATCACTAAGGGGC 58.475 47.619 0.00 0.00 0.00 5.80
6141 6711 5.949354 TCAATACACCAAAATCACTAAGGGG 59.051 40.000 0.00 0.00 0.00 4.79
6142 6712 7.393234 TCTTCAATACACCAAAATCACTAAGGG 59.607 37.037 0.00 0.00 0.00 3.95
6143 6713 8.237267 GTCTTCAATACACCAAAATCACTAAGG 58.763 37.037 0.00 0.00 0.00 2.69
6144 6714 9.003658 AGTCTTCAATACACCAAAATCACTAAG 57.996 33.333 0.00 0.00 0.00 2.18
6145 6715 8.918202 AGTCTTCAATACACCAAAATCACTAA 57.082 30.769 0.00 0.00 0.00 2.24
6146 6716 8.918202 AAGTCTTCAATACACCAAAATCACTA 57.082 30.769 0.00 0.00 0.00 2.74
6147 6717 7.823745 AAGTCTTCAATACACCAAAATCACT 57.176 32.000 0.00 0.00 0.00 3.41
6151 6721 9.975218 ACCTATAAGTCTTCAATACACCAAAAT 57.025 29.630 0.00 0.00 0.00 1.82
6152 6722 9.802039 AACCTATAAGTCTTCAATACACCAAAA 57.198 29.630 0.00 0.00 0.00 2.44
6166 6736 8.569641 CGCATTAGTCTCTTAACCTATAAGTCT 58.430 37.037 0.00 0.00 0.00 3.24
6167 6737 8.351461 ACGCATTAGTCTCTTAACCTATAAGTC 58.649 37.037 0.00 0.00 0.00 3.01
6168 6738 8.235359 ACGCATTAGTCTCTTAACCTATAAGT 57.765 34.615 0.00 0.00 0.00 2.24
6169 6739 9.530633 AAACGCATTAGTCTCTTAACCTATAAG 57.469 33.333 0.00 0.00 0.00 1.73
6170 6740 9.309516 CAAACGCATTAGTCTCTTAACCTATAA 57.690 33.333 0.00 0.00 0.00 0.98
6171 6741 8.472413 ACAAACGCATTAGTCTCTTAACCTATA 58.528 33.333 0.00 0.00 0.00 1.31
6172 6742 7.277981 CACAAACGCATTAGTCTCTTAACCTAT 59.722 37.037 0.00 0.00 0.00 2.57
6173 6743 6.588756 CACAAACGCATTAGTCTCTTAACCTA 59.411 38.462 0.00 0.00 0.00 3.08
6174 6744 5.408604 CACAAACGCATTAGTCTCTTAACCT 59.591 40.000 0.00 0.00 0.00 3.50
6175 6745 5.407387 TCACAAACGCATTAGTCTCTTAACC 59.593 40.000 0.00 0.00 0.00 2.85
6176 6746 6.145696 ACTCACAAACGCATTAGTCTCTTAAC 59.854 38.462 0.00 0.00 0.00 2.01
6177 6747 6.145534 CACTCACAAACGCATTAGTCTCTTAA 59.854 38.462 0.00 0.00 0.00 1.85
6178 6748 5.633601 CACTCACAAACGCATTAGTCTCTTA 59.366 40.000 0.00 0.00 0.00 2.10
6179 6749 4.449068 CACTCACAAACGCATTAGTCTCTT 59.551 41.667 0.00 0.00 0.00 2.85
6180 6750 3.990469 CACTCACAAACGCATTAGTCTCT 59.010 43.478 0.00 0.00 0.00 3.10
6181 6751 3.741344 ACACTCACAAACGCATTAGTCTC 59.259 43.478 0.00 0.00 0.00 3.36
6182 6752 3.728845 ACACTCACAAACGCATTAGTCT 58.271 40.909 0.00 0.00 0.00 3.24
6183 6753 4.446385 TGTACACTCACAAACGCATTAGTC 59.554 41.667 0.00 0.00 0.00 2.59
6184 6754 4.210537 GTGTACACTCACAAACGCATTAGT 59.789 41.667 18.92 0.00 38.12 2.24
6185 6755 4.210328 TGTGTACACTCACAAACGCATTAG 59.790 41.667 25.60 0.00 43.92 1.73
6186 6756 4.120589 TGTGTACACTCACAAACGCATTA 58.879 39.130 25.60 0.00 43.92 1.90
6187 6757 2.939756 TGTGTACACTCACAAACGCATT 59.060 40.909 25.60 0.00 43.92 3.56
6188 6758 2.543848 CTGTGTACACTCACAAACGCAT 59.456 45.455 25.60 0.00 45.70 4.73
6189 6759 1.930503 CTGTGTACACTCACAAACGCA 59.069 47.619 25.60 1.63 45.70 5.24
6190 6760 1.260561 CCTGTGTACACTCACAAACGC 59.739 52.381 25.60 0.00 45.70 4.84
6191 6761 2.538449 GACCTGTGTACACTCACAAACG 59.462 50.000 25.60 7.41 45.70 3.60
6192 6762 3.793559 AGACCTGTGTACACTCACAAAC 58.206 45.455 25.60 11.05 45.70 2.93
6193 6763 5.801531 ATAGACCTGTGTACACTCACAAA 57.198 39.130 25.60 8.96 45.70 2.83
6194 6764 6.492429 ACTTATAGACCTGTGTACACTCACAA 59.508 38.462 25.60 5.22 45.70 3.33
6195 6765 6.008331 ACTTATAGACCTGTGTACACTCACA 58.992 40.000 25.60 5.66 44.54 3.58
6196 6766 6.374894 AGACTTATAGACCTGTGTACACTCAC 59.625 42.308 25.60 14.26 38.63 3.51
6197 6767 6.482524 AGACTTATAGACCTGTGTACACTCA 58.517 40.000 25.60 6.77 0.00 3.41
6198 6768 8.561212 CATAGACTTATAGACCTGTGTACACTC 58.439 40.741 25.60 15.39 0.00 3.51
6199 6769 8.272889 TCATAGACTTATAGACCTGTGTACACT 58.727 37.037 25.60 6.76 0.00 3.55
6200 6770 8.447924 TCATAGACTTATAGACCTGTGTACAC 57.552 38.462 19.36 19.36 0.00 2.90
6201 6771 7.720074 CCTCATAGACTTATAGACCTGTGTACA 59.280 40.741 0.00 0.00 0.00 2.90
6202 6772 7.937942 TCCTCATAGACTTATAGACCTGTGTAC 59.062 40.741 0.00 0.00 0.00 2.90
6203 6773 8.042286 TCCTCATAGACTTATAGACCTGTGTA 57.958 38.462 0.00 0.00 0.00 2.90
6204 6774 6.912426 TCCTCATAGACTTATAGACCTGTGT 58.088 40.000 0.00 0.00 0.00 3.72
6205 6775 7.001674 ACTCCTCATAGACTTATAGACCTGTG 58.998 42.308 0.00 0.00 0.00 3.66
6206 6776 7.156694 ACTCCTCATAGACTTATAGACCTGT 57.843 40.000 0.00 0.00 0.00 4.00
6207 6777 8.356657 CAAACTCCTCATAGACTTATAGACCTG 58.643 40.741 0.00 0.00 0.00 4.00
6208 6778 8.282982 TCAAACTCCTCATAGACTTATAGACCT 58.717 37.037 0.00 0.00 0.00 3.85
6209 6779 8.466617 TCAAACTCCTCATAGACTTATAGACC 57.533 38.462 0.00 0.00 0.00 3.85
6218 6788 9.482627 CCTGTAAATATCAAACTCCTCATAGAC 57.517 37.037 0.00 0.00 0.00 2.59
6219 6789 8.651389 CCCTGTAAATATCAAACTCCTCATAGA 58.349 37.037 0.00 0.00 0.00 1.98
6220 6790 8.651389 TCCCTGTAAATATCAAACTCCTCATAG 58.349 37.037 0.00 0.00 0.00 2.23
6221 6791 8.561536 TCCCTGTAAATATCAAACTCCTCATA 57.438 34.615 0.00 0.00 0.00 2.15
6222 6792 7.451731 TCCCTGTAAATATCAAACTCCTCAT 57.548 36.000 0.00 0.00 0.00 2.90
6223 6793 6.884472 TCCCTGTAAATATCAAACTCCTCA 57.116 37.500 0.00 0.00 0.00 3.86
6224 6794 7.829706 ACTTTCCCTGTAAATATCAAACTCCTC 59.170 37.037 0.00 0.00 0.00 3.71
6225 6795 7.699878 ACTTTCCCTGTAAATATCAAACTCCT 58.300 34.615 0.00 0.00 0.00 3.69
6226 6796 7.201617 CGACTTTCCCTGTAAATATCAAACTCC 60.202 40.741 0.00 0.00 0.00 3.85
6227 6797 7.548075 TCGACTTTCCCTGTAAATATCAAACTC 59.452 37.037 0.00 0.00 0.00 3.01
6228 6798 7.333672 GTCGACTTTCCCTGTAAATATCAAACT 59.666 37.037 8.70 0.00 0.00 2.66
6229 6799 7.413767 GGTCGACTTTCCCTGTAAATATCAAAC 60.414 40.741 16.46 0.00 0.00 2.93
6230 6800 6.596497 GGTCGACTTTCCCTGTAAATATCAAA 59.404 38.462 16.46 0.00 0.00 2.69
6231 6801 6.110707 GGTCGACTTTCCCTGTAAATATCAA 58.889 40.000 16.46 0.00 0.00 2.57
6232 6802 5.395990 GGGTCGACTTTCCCTGTAAATATCA 60.396 44.000 16.46 0.00 40.48 2.15
6233 6803 5.055144 GGGTCGACTTTCCCTGTAAATATC 58.945 45.833 16.46 0.00 40.48 1.63
6234 6804 4.141551 GGGGTCGACTTTCCCTGTAAATAT 60.142 45.833 18.21 0.00 43.00 1.28
6235 6805 3.198417 GGGGTCGACTTTCCCTGTAAATA 59.802 47.826 18.21 0.00 43.00 1.40
6236 6806 2.026542 GGGGTCGACTTTCCCTGTAAAT 60.027 50.000 18.21 0.00 43.00 1.40
6237 6807 1.348696 GGGGTCGACTTTCCCTGTAAA 59.651 52.381 18.21 0.00 43.00 2.01
6238 6808 0.978907 GGGGTCGACTTTCCCTGTAA 59.021 55.000 18.21 0.00 43.00 2.41
6239 6809 2.674958 GGGGTCGACTTTCCCTGTA 58.325 57.895 18.21 0.00 43.00 2.74
6240 6810 3.479979 GGGGTCGACTTTCCCTGT 58.520 61.111 18.21 0.00 43.00 4.00
6243 6813 2.865119 TTTTAGGGGTCGACTTTCCC 57.135 50.000 17.91 17.91 42.73 3.97
6244 6814 4.329392 TCATTTTTAGGGGTCGACTTTCC 58.671 43.478 16.46 14.27 0.00 3.13
6245 6815 5.952526 TTCATTTTTAGGGGTCGACTTTC 57.047 39.130 16.46 5.58 0.00 2.62
6246 6816 8.053355 AGATATTCATTTTTAGGGGTCGACTTT 58.947 33.333 16.46 3.95 0.00 2.66
6247 6817 7.574607 AGATATTCATTTTTAGGGGTCGACTT 58.425 34.615 16.46 4.32 0.00 3.01
6248 6818 7.138054 AGATATTCATTTTTAGGGGTCGACT 57.862 36.000 16.46 0.00 0.00 4.18
6249 6819 7.307219 CGAAGATATTCATTTTTAGGGGTCGAC 60.307 40.741 7.13 7.13 0.00 4.20
6250 6820 6.704493 CGAAGATATTCATTTTTAGGGGTCGA 59.296 38.462 0.35 0.00 0.00 4.20
6251 6821 6.704493 TCGAAGATATTCATTTTTAGGGGTCG 59.296 38.462 0.35 0.00 0.00 4.79
6252 6822 7.715686 AGTCGAAGATATTCATTTTTAGGGGTC 59.284 37.037 0.35 0.00 40.67 4.46
6253 6823 7.499232 CAGTCGAAGATATTCATTTTTAGGGGT 59.501 37.037 0.35 0.00 40.67 4.95
6254 6824 7.715249 TCAGTCGAAGATATTCATTTTTAGGGG 59.285 37.037 0.35 0.00 40.67 4.79
6255 6825 8.662781 TCAGTCGAAGATATTCATTTTTAGGG 57.337 34.615 0.35 0.00 40.67 3.53
6272 6842 7.659799 TCAGAAATACCAAAATCTTCAGTCGAA 59.340 33.333 0.00 0.00 0.00 3.71
6273 6843 7.117812 GTCAGAAATACCAAAATCTTCAGTCGA 59.882 37.037 0.00 0.00 0.00 4.20
6274 6844 7.237173 GTCAGAAATACCAAAATCTTCAGTCG 58.763 38.462 0.00 0.00 0.00 4.18
6275 6845 7.117812 TCGTCAGAAATACCAAAATCTTCAGTC 59.882 37.037 0.00 0.00 0.00 3.51
6276 6846 6.934645 TCGTCAGAAATACCAAAATCTTCAGT 59.065 34.615 0.00 0.00 0.00 3.41
6277 6847 7.118390 AGTCGTCAGAAATACCAAAATCTTCAG 59.882 37.037 0.00 0.00 0.00 3.02
6278 6848 6.934645 AGTCGTCAGAAATACCAAAATCTTCA 59.065 34.615 0.00 0.00 0.00 3.02
6279 6849 7.365840 AGTCGTCAGAAATACCAAAATCTTC 57.634 36.000 0.00 0.00 0.00 2.87
6280 6850 7.745620 AAGTCGTCAGAAATACCAAAATCTT 57.254 32.000 0.00 0.00 0.00 2.40
6281 6851 7.444183 TGAAAGTCGTCAGAAATACCAAAATCT 59.556 33.333 0.00 0.00 0.00 2.40
6282 6852 7.581476 TGAAAGTCGTCAGAAATACCAAAATC 58.419 34.615 0.00 0.00 0.00 2.17
6283 6853 7.504924 TGAAAGTCGTCAGAAATACCAAAAT 57.495 32.000 0.00 0.00 0.00 1.82
6284 6854 6.928979 TGAAAGTCGTCAGAAATACCAAAA 57.071 33.333 0.00 0.00 0.00 2.44
6285 6855 6.708502 TCATGAAAGTCGTCAGAAATACCAAA 59.291 34.615 0.00 0.00 0.00 3.28
6286 6856 6.227522 TCATGAAAGTCGTCAGAAATACCAA 58.772 36.000 0.00 0.00 0.00 3.67
6287 6857 5.789521 TCATGAAAGTCGTCAGAAATACCA 58.210 37.500 0.00 0.00 0.00 3.25
6288 6858 6.590292 TCTTCATGAAAGTCGTCAGAAATACC 59.410 38.462 9.88 0.00 36.31 2.73
6289 6859 7.329717 AGTCTTCATGAAAGTCGTCAGAAATAC 59.670 37.037 9.88 0.00 36.31 1.89
6290 6860 7.378966 AGTCTTCATGAAAGTCGTCAGAAATA 58.621 34.615 9.88 0.00 36.31 1.40
6291 6861 6.226787 AGTCTTCATGAAAGTCGTCAGAAAT 58.773 36.000 9.88 0.00 36.31 2.17
6292 6862 5.601662 AGTCTTCATGAAAGTCGTCAGAAA 58.398 37.500 9.88 0.00 36.31 2.52
6293 6863 5.201713 AGTCTTCATGAAAGTCGTCAGAA 57.798 39.130 9.88 0.00 36.31 3.02
6294 6864 4.855715 AGTCTTCATGAAAGTCGTCAGA 57.144 40.909 9.88 0.00 36.31 3.27
6295 6865 5.463392 TCAAAGTCTTCATGAAAGTCGTCAG 59.537 40.000 9.88 0.00 36.31 3.51
6296 6866 5.356426 TCAAAGTCTTCATGAAAGTCGTCA 58.644 37.500 9.88 0.00 36.31 4.35
6297 6867 5.907197 TCAAAGTCTTCATGAAAGTCGTC 57.093 39.130 9.88 0.00 36.31 4.20
6298 6868 6.677781 TTTCAAAGTCTTCATGAAAGTCGT 57.322 33.333 9.88 0.00 37.95 4.34
6303 6873 8.279970 TCTTCACTTTCAAAGTCTTCATGAAA 57.720 30.769 9.88 10.57 40.46 2.69
6304 6874 7.864108 TCTTCACTTTCAAAGTCTTCATGAA 57.136 32.000 8.12 8.12 40.46 2.57
6305 6875 7.864108 TTCTTCACTTTCAAAGTCTTCATGA 57.136 32.000 0.00 0.00 40.46 3.07
6306 6876 9.525409 AATTTCTTCACTTTCAAAGTCTTCATG 57.475 29.630 0.00 0.00 40.46 3.07
6307 6877 9.525409 CAATTTCTTCACTTTCAAAGTCTTCAT 57.475 29.630 0.00 0.00 40.46 2.57
6308 6878 7.975616 CCAATTTCTTCACTTTCAAAGTCTTCA 59.024 33.333 0.00 0.00 40.46 3.02
6309 6879 7.976175 ACCAATTTCTTCACTTTCAAAGTCTTC 59.024 33.333 0.00 0.00 40.46 2.87
6310 6880 7.761249 CACCAATTTCTTCACTTTCAAAGTCTT 59.239 33.333 0.00 0.00 40.46 3.01
6311 6881 7.093771 ACACCAATTTCTTCACTTTCAAAGTCT 60.094 33.333 0.00 0.00 40.46 3.24
6312 6882 7.035612 ACACCAATTTCTTCACTTTCAAAGTC 58.964 34.615 0.00 0.00 40.46 3.01
6313 6883 6.935167 ACACCAATTTCTTCACTTTCAAAGT 58.065 32.000 0.00 0.00 44.06 2.66
6314 6884 9.185192 GATACACCAATTTCTTCACTTTCAAAG 57.815 33.333 0.00 0.00 0.00 2.77
6315 6885 8.141268 GGATACACCAATTTCTTCACTTTCAAA 58.859 33.333 0.00 0.00 38.79 2.69
6316 6886 7.521423 CGGATACACCAATTTCTTCACTTTCAA 60.521 37.037 0.00 0.00 38.90 2.69
6317 6887 6.072728 CGGATACACCAATTTCTTCACTTTCA 60.073 38.462 0.00 0.00 38.90 2.69
6318 6888 6.072673 ACGGATACACCAATTTCTTCACTTTC 60.073 38.462 0.00 0.00 38.90 2.62
6319 6889 5.768164 ACGGATACACCAATTTCTTCACTTT 59.232 36.000 0.00 0.00 38.90 2.66
6320 6890 5.181245 CACGGATACACCAATTTCTTCACTT 59.819 40.000 0.00 0.00 38.90 3.16
6321 6891 4.695455 CACGGATACACCAATTTCTTCACT 59.305 41.667 0.00 0.00 38.90 3.41
6322 6892 4.693566 TCACGGATACACCAATTTCTTCAC 59.306 41.667 0.00 0.00 38.90 3.18
6323 6893 4.900684 TCACGGATACACCAATTTCTTCA 58.099 39.130 0.00 0.00 38.90 3.02
6324 6894 5.642063 TCTTCACGGATACACCAATTTCTTC 59.358 40.000 0.00 0.00 38.90 2.87
6325 6895 5.411669 GTCTTCACGGATACACCAATTTCTT 59.588 40.000 0.00 0.00 38.90 2.52
6326 6896 4.935808 GTCTTCACGGATACACCAATTTCT 59.064 41.667 0.00 0.00 38.90 2.52
6327 6897 4.935808 AGTCTTCACGGATACACCAATTTC 59.064 41.667 0.00 0.00 38.90 2.17
6328 6898 4.906618 AGTCTTCACGGATACACCAATTT 58.093 39.130 0.00 0.00 38.90 1.82
6329 6899 4.553330 AGTCTTCACGGATACACCAATT 57.447 40.909 0.00 0.00 38.90 2.32
6330 6900 4.020573 TCAAGTCTTCACGGATACACCAAT 60.021 41.667 0.00 0.00 38.90 3.16
6331 6901 3.322541 TCAAGTCTTCACGGATACACCAA 59.677 43.478 0.00 0.00 38.90 3.67
6332 6902 2.894765 TCAAGTCTTCACGGATACACCA 59.105 45.455 0.00 0.00 38.90 4.17
6333 6903 3.587797 TCAAGTCTTCACGGATACACC 57.412 47.619 0.00 0.00 0.00 4.16
6334 6904 6.978659 TGAATATCAAGTCTTCACGGATACAC 59.021 38.462 0.00 0.00 30.94 2.90
6335 6905 7.107639 TGAATATCAAGTCTTCACGGATACA 57.892 36.000 0.00 0.00 30.94 2.29
6336 6906 7.359598 GCATGAATATCAAGTCTTCACGGATAC 60.360 40.741 0.00 0.00 32.16 2.24
6337 6907 6.646653 GCATGAATATCAAGTCTTCACGGATA 59.353 38.462 0.00 0.00 32.16 2.59
6338 6908 5.468072 GCATGAATATCAAGTCTTCACGGAT 59.532 40.000 0.00 0.00 32.16 4.18
6339 6909 4.811024 GCATGAATATCAAGTCTTCACGGA 59.189 41.667 0.00 0.00 32.16 4.69
6340 6910 4.318333 CGCATGAATATCAAGTCTTCACGG 60.318 45.833 0.00 0.00 32.16 4.94
6341 6911 4.504097 TCGCATGAATATCAAGTCTTCACG 59.496 41.667 0.00 0.00 32.16 4.35
6342 6912 5.050499 CCTCGCATGAATATCAAGTCTTCAC 60.050 44.000 0.00 0.00 32.16 3.18
6343 6913 5.052481 CCTCGCATGAATATCAAGTCTTCA 58.948 41.667 0.00 0.00 33.75 3.02
6344 6914 5.292765 TCCTCGCATGAATATCAAGTCTTC 58.707 41.667 0.00 0.00 0.00 2.87
6345 6915 5.282055 TCCTCGCATGAATATCAAGTCTT 57.718 39.130 0.00 0.00 0.00 3.01
6346 6916 4.944619 TCCTCGCATGAATATCAAGTCT 57.055 40.909 0.00 0.00 0.00 3.24
6347 6917 7.547019 TCATATTCCTCGCATGAATATCAAGTC 59.453 37.037 0.00 0.00 41.29 3.01
6348 6918 7.389232 TCATATTCCTCGCATGAATATCAAGT 58.611 34.615 0.00 0.00 41.29 3.16
6349 6919 7.838771 TCATATTCCTCGCATGAATATCAAG 57.161 36.000 0.00 1.75 41.29 3.02
6350 6920 7.148356 GCTTCATATTCCTCGCATGAATATCAA 60.148 37.037 0.00 3.85 41.29 2.57
6351 6921 6.314648 GCTTCATATTCCTCGCATGAATATCA 59.685 38.462 0.00 0.00 41.29 2.15
6352 6922 6.538021 AGCTTCATATTCCTCGCATGAATATC 59.462 38.462 0.00 1.36 41.29 1.63
6353 6923 6.413052 AGCTTCATATTCCTCGCATGAATAT 58.587 36.000 0.00 6.56 43.03 1.28
6354 6924 5.798132 AGCTTCATATTCCTCGCATGAATA 58.202 37.500 0.00 0.00 37.86 1.75
6355 6925 4.649692 AGCTTCATATTCCTCGCATGAAT 58.350 39.130 0.00 0.00 37.86 2.57
6356 6926 4.077300 AGCTTCATATTCCTCGCATGAA 57.923 40.909 0.00 0.00 36.57 2.57
6357 6927 3.758755 AGCTTCATATTCCTCGCATGA 57.241 42.857 0.00 0.00 0.00 3.07
6358 6928 3.811497 TCAAGCTTCATATTCCTCGCATG 59.189 43.478 0.00 0.00 0.00 4.06
6359 6929 4.077300 TCAAGCTTCATATTCCTCGCAT 57.923 40.909 0.00 0.00 0.00 4.73
6360 6930 3.541996 TCAAGCTTCATATTCCTCGCA 57.458 42.857 0.00 0.00 0.00 5.10
6361 6931 4.025313 GTCTTCAAGCTTCATATTCCTCGC 60.025 45.833 0.00 0.00 0.00 5.03
6362 6932 5.355596 AGTCTTCAAGCTTCATATTCCTCG 58.644 41.667 0.00 0.00 0.00 4.63
6363 6933 7.465245 CGAAAGTCTTCAAGCTTCATATTCCTC 60.465 40.741 0.00 0.00 0.00 3.71
6364 6934 6.314896 CGAAAGTCTTCAAGCTTCATATTCCT 59.685 38.462 0.00 0.00 0.00 3.36
6365 6935 6.092807 ACGAAAGTCTTCAAGCTTCATATTCC 59.907 38.462 0.00 0.00 44.19 3.01
6366 6936 7.066374 ACGAAAGTCTTCAAGCTTCATATTC 57.934 36.000 0.00 0.00 44.19 1.75
6386 6956 9.849166 AGAGAAAAACAAAACTATGAAAACGAA 57.151 25.926 0.00 0.00 0.00 3.85
6387 6957 9.849166 AAGAGAAAAACAAAACTATGAAAACGA 57.151 25.926 0.00 0.00 0.00 3.85
6397 6967 8.972262 GACTCAAGAAAGAGAAAAACAAAACT 57.028 30.769 0.00 0.00 38.98 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.