Multiple sequence alignment - TraesCS1B01G267700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G267700 chr1B 100.000 3563 0 0 1 3563 470719050 470715488 0.000000e+00 6580.0
1 TraesCS1B01G267700 chr1B 88.483 356 31 5 2942 3290 372099422 372099070 4.250000e-114 422.0
2 TraesCS1B01G267700 chr1A 94.218 1937 86 13 608 2531 449520573 449518650 0.000000e+00 2933.0
3 TraesCS1B01G267700 chr1A 90.210 286 19 6 3225 3501 576158224 576158509 7.270000e-97 364.0
4 TraesCS1B01G267700 chr1A 82.026 306 32 13 2652 2945 449518585 449518291 4.600000e-59 239.0
5 TraesCS1B01G267700 chr1A 79.191 346 68 3 1629 1972 2378575 2378232 1.650000e-58 237.0
6 TraesCS1B01G267700 chr1A 81.522 276 38 12 2652 2919 449517753 449517483 7.750000e-52 215.0
7 TraesCS1B01G267700 chr1A 90.805 87 7 1 288 373 449520724 449520638 8.080000e-22 115.0
8 TraesCS1B01G267700 chr1D 95.083 1749 66 15 797 2531 349082996 349081254 0.000000e+00 2736.0
9 TraesCS1B01G267700 chr1D 83.273 275 34 11 2652 2919 349080459 349080190 3.550000e-60 243.0
10 TraesCS1B01G267700 chr1D 87.356 174 9 4 640 804 349084162 349083993 1.690000e-43 187.0
11 TraesCS1B01G267700 chr1D 88.435 147 9 3 283 424 349084364 349084221 1.700000e-38 171.0
12 TraesCS1B01G267700 chr1D 88.028 142 14 2 1 139 349091297 349091156 7.910000e-37 165.0
13 TraesCS1B01G267700 chr1D 81.461 178 10 3 130 285 349085170 349084994 1.340000e-24 124.0
14 TraesCS1B01G267700 chr1D 89.091 55 2 1 606 656 349084224 349084170 8.260000e-07 65.8
15 TraesCS1B01G267700 chr3B 98.712 621 5 2 2944 3563 806129148 806129766 0.000000e+00 1099.0
16 TraesCS1B01G267700 chr3B 95.765 307 13 0 3253 3559 168302186 168302492 2.470000e-136 496.0
17 TraesCS1B01G267700 chr3B 89.807 363 24 10 2936 3294 756622567 756622214 1.510000e-123 453.0
18 TraesCS1B01G267700 chr6A 98.544 618 6 2 2943 3559 12146467 12145852 0.000000e+00 1088.0
19 TraesCS1B01G267700 chr6A 80.191 838 135 23 1160 1976 613660011 613660838 1.830000e-167 599.0
20 TraesCS1B01G267700 chr6A 90.986 355 20 8 2947 3294 116946274 116946623 5.390000e-128 468.0
21 TraesCS1B01G267700 chr6A 82.447 376 58 8 2044 2416 613664038 613663668 4.440000e-84 322.0
22 TraesCS1B01G267700 chr6A 94.819 193 10 0 424 616 176980044 176980236 5.780000e-78 302.0
23 TraesCS1B01G267700 chr6A 81.370 365 68 0 2045 2409 613660853 613661217 7.480000e-77 298.0
24 TraesCS1B01G267700 chr5D 75.821 1340 282 31 1043 2364 3632910 3634225 3.000000e-180 641.0
25 TraesCS1B01G267700 chr5D 75.821 1340 282 30 1043 2364 3660807 3659492 3.000000e-180 641.0
26 TraesCS1B01G267700 chr5D 76.074 1141 253 15 1231 2364 93862745 93861618 8.580000e-161 577.0
27 TraesCS1B01G267700 chr5D 75.832 1142 242 28 1234 2364 3636068 3637186 1.870000e-152 549.0
28 TraesCS1B01G267700 chr5D 77.398 761 161 6 1605 2364 3654944 3654194 3.260000e-120 442.0
29 TraesCS1B01G267700 chr5D 95.213 188 8 1 424 611 130661509 130661323 2.690000e-76 296.0
30 TraesCS1B01G267700 chr5B 76.507 1145 241 18 1231 2364 5072740 5071613 1.830000e-167 599.0
31 TraesCS1B01G267700 chr5B 87.500 328 33 5 2970 3294 648734726 648735048 4.340000e-99 372.0
32 TraesCS1B01G267700 chr5B 95.213 188 9 0 424 611 447830664 447830851 7.480000e-77 298.0
33 TraesCS1B01G267700 chr7A 76.028 1143 250 16 1231 2364 700300523 700301650 3.990000e-159 571.0
34 TraesCS1B01G267700 chr7A 78.855 856 169 6 1512 2364 700338622 700339468 5.160000e-158 568.0
35 TraesCS1B01G267700 chr7A 78.616 318 64 4 1631 1946 459188126 459187811 1.300000e-49 207.0
36 TraesCS1B01G267700 chr7A 80.095 211 39 3 2054 2264 700595503 700595710 1.710000e-33 154.0
37 TraesCS1B01G267700 chr5A 76.245 1145 232 32 1234 2364 2427897 2426779 3.990000e-159 571.0
38 TraesCS1B01G267700 chr5A 91.429 280 12 3 3225 3495 688118363 688118639 1.210000e-99 374.0
39 TraesCS1B01G267700 chr5A 86.585 328 30 7 2970 3294 328541810 328542126 2.040000e-92 350.0
40 TraesCS1B01G267700 chr5A 83.636 110 16 2 1462 1570 2542714 2542606 6.290000e-18 102.0
41 TraesCS1B01G267700 chr6B 97.727 308 7 0 3256 3563 600602117 600601810 6.770000e-147 531.0
42 TraesCS1B01G267700 chr6B 97.712 306 7 0 3256 3561 600603588 600603283 8.760000e-146 527.0
43 TraesCS1B01G267700 chr2B 97.712 306 7 0 3256 3561 623522406 623522101 8.760000e-146 527.0
44 TraesCS1B01G267700 chr7D 77.093 860 174 11 1512 2364 608223040 608223883 3.220000e-130 475.0
45 TraesCS1B01G267700 chr7D 95.213 188 8 1 424 611 531982557 531982371 2.690000e-76 296.0
46 TraesCS1B01G267700 chr7D 78.317 309 66 1 2059 2367 552929397 552929704 7.800000e-47 198.0
47 TraesCS1B01G267700 chr4A 90.909 352 20 9 2947 3294 702018707 702019050 2.510000e-126 462.0
48 TraesCS1B01G267700 chr2D 95.668 277 12 0 3225 3501 117800370 117800646 2.520000e-121 446.0
49 TraesCS1B01G267700 chr2D 95.812 191 8 0 419 609 591983006 591983196 3.450000e-80 309.0
50 TraesCS1B01G267700 chr2D 94.764 191 10 0 419 609 591997710 591997900 7.480000e-77 298.0
51 TraesCS1B01G267700 chr3D 88.732 355 30 5 2943 3294 208828654 208829001 3.290000e-115 425.0
52 TraesCS1B01G267700 chr4B 95.312 192 9 0 422 613 625223527 625223718 4.470000e-79 305.0
53 TraesCS1B01G267700 chr4D 94.792 192 9 1 421 611 81663642 81663833 7.480000e-77 298.0
54 TraesCS1B01G267700 chr6D 94.709 189 10 0 424 612 394929950 394929762 9.670000e-76 294.0
55 TraesCS1B01G267700 chr7B 79.100 311 60 4 2059 2367 597682071 597682378 3.600000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G267700 chr1B 470715488 470719050 3562 True 6580.0 6580 100.000000 1 3563 1 chr1B.!!$R2 3562
1 TraesCS1B01G267700 chr1A 449517483 449520724 3241 True 875.5 2933 87.142750 288 2945 4 chr1A.!!$R2 2657
2 TraesCS1B01G267700 chr1D 349080190 349085170 4980 True 587.8 2736 87.449833 130 2919 6 chr1D.!!$R2 2789
3 TraesCS1B01G267700 chr3B 806129148 806129766 618 False 1099.0 1099 98.712000 2944 3563 1 chr3B.!!$F2 619
4 TraesCS1B01G267700 chr6A 12145852 12146467 615 True 1088.0 1088 98.544000 2943 3559 1 chr6A.!!$R1 616
5 TraesCS1B01G267700 chr6A 613660011 613661217 1206 False 448.5 599 80.780500 1160 2409 2 chr6A.!!$F3 1249
6 TraesCS1B01G267700 chr5D 3659492 3660807 1315 True 641.0 641 75.821000 1043 2364 1 chr5D.!!$R2 1321
7 TraesCS1B01G267700 chr5D 3632910 3637186 4276 False 595.0 641 75.826500 1043 2364 2 chr5D.!!$F1 1321
8 TraesCS1B01G267700 chr5D 93861618 93862745 1127 True 577.0 577 76.074000 1231 2364 1 chr5D.!!$R3 1133
9 TraesCS1B01G267700 chr5D 3654194 3654944 750 True 442.0 442 77.398000 1605 2364 1 chr5D.!!$R1 759
10 TraesCS1B01G267700 chr5B 5071613 5072740 1127 True 599.0 599 76.507000 1231 2364 1 chr5B.!!$R1 1133
11 TraesCS1B01G267700 chr7A 700300523 700301650 1127 False 571.0 571 76.028000 1231 2364 1 chr7A.!!$F1 1133
12 TraesCS1B01G267700 chr7A 700338622 700339468 846 False 568.0 568 78.855000 1512 2364 1 chr7A.!!$F2 852
13 TraesCS1B01G267700 chr5A 2426779 2427897 1118 True 571.0 571 76.245000 1234 2364 1 chr5A.!!$R1 1130
14 TraesCS1B01G267700 chr6B 600601810 600603588 1778 True 529.0 531 97.719500 3256 3563 2 chr6B.!!$R1 307
15 TraesCS1B01G267700 chr7D 608223040 608223883 843 False 475.0 475 77.093000 1512 2364 1 chr7D.!!$F2 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.036732 AGCTTCCGAGGAAACATGCA 59.963 50.0 13.78 0.0 33.34 3.96 F
506 1180 0.109913 AAGAACCAAACGGGAGGGAC 59.890 55.0 0.00 0.0 41.15 4.46 F
508 1182 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.0 0.00 0.0 41.55 3.01 F
1185 2907 0.397254 CCCCCTACGTCACCATCTCT 60.397 60.0 0.00 0.0 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 3778 1.673920 TGTTTTCTTCGTCCTTGCCAC 59.326 47.619 0.00 0.00 0.0 5.01 R
2484 7185 0.109086 CGCTCGAACTGGTGTCATCT 60.109 55.000 0.00 0.00 0.0 2.90 R
2492 7199 0.179150 CTCCTCTTCGCTCGAACTGG 60.179 60.000 0.02 6.44 0.0 4.00 R
3173 8710 0.106619 GGAGAGAGAGGGGTTAGCGA 60.107 60.000 0.00 0.00 0.0 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.375417 CAATAAGTGCACAAAGACCATGA 57.625 39.130 21.04 0.00 0.00 3.07
45 46 1.888512 GTGCACAAAGACCATGACCAT 59.111 47.619 13.17 0.00 0.00 3.55
46 47 1.887854 TGCACAAAGACCATGACCATG 59.112 47.619 0.00 3.11 38.51 3.66
48 49 2.095059 GCACAAAGACCATGACCATGAC 60.095 50.000 11.28 5.56 41.20 3.06
50 51 2.108075 ACAAAGACCATGACCATGACCA 59.892 45.455 11.28 0.00 41.20 4.02
53 54 2.199208 AGACCATGACCATGACCATCA 58.801 47.619 11.28 0.00 41.20 3.07
54 55 2.781757 AGACCATGACCATGACCATCAT 59.218 45.455 11.28 0.00 41.20 2.45
55 56 3.203710 AGACCATGACCATGACCATCATT 59.796 43.478 11.28 0.00 41.20 2.57
57 58 3.702548 ACCATGACCATGACCATCATTTG 59.297 43.478 11.28 0.00 41.20 2.32
58 59 3.069016 CCATGACCATGACCATCATTTGG 59.931 47.826 11.28 0.00 42.38 3.28
73 74 5.573380 TCATTTGGGATATCTGGAAGGAG 57.427 43.478 2.05 0.00 0.00 3.69
74 75 5.226803 TCATTTGGGATATCTGGAAGGAGA 58.773 41.667 2.05 0.00 0.00 3.71
75 76 5.853922 TCATTTGGGATATCTGGAAGGAGAT 59.146 40.000 2.05 0.00 36.61 2.75
76 77 7.024994 TCATTTGGGATATCTGGAAGGAGATA 58.975 38.462 2.05 0.00 38.90 1.98
77 78 7.517254 TCATTTGGGATATCTGGAAGGAGATAA 59.483 37.037 2.05 0.00 38.23 1.75
79 80 7.895144 TTGGGATATCTGGAAGGAGATAAAT 57.105 36.000 2.05 0.00 38.23 1.40
80 81 8.989045 TTGGGATATCTGGAAGGAGATAAATA 57.011 34.615 2.05 0.00 38.23 1.40
81 82 8.989045 TGGGATATCTGGAAGGAGATAAATAA 57.011 34.615 2.05 0.00 38.23 1.40
82 83 8.826765 TGGGATATCTGGAAGGAGATAAATAAC 58.173 37.037 2.05 0.00 38.23 1.89
83 84 8.268605 GGGATATCTGGAAGGAGATAAATAACC 58.731 40.741 2.05 0.00 38.23 2.85
85 86 4.957296 TCTGGAAGGAGATAAATAACCGC 58.043 43.478 0.00 0.00 0.00 5.68
87 88 4.703897 TGGAAGGAGATAAATAACCGCAG 58.296 43.478 0.00 0.00 0.00 5.18
88 89 3.498777 GGAAGGAGATAAATAACCGCAGC 59.501 47.826 0.00 0.00 0.00 5.25
89 90 4.381411 GAAGGAGATAAATAACCGCAGCT 58.619 43.478 0.00 0.00 0.00 4.24
90 91 4.423625 AGGAGATAAATAACCGCAGCTT 57.576 40.909 0.00 0.00 0.00 3.74
91 92 4.381411 AGGAGATAAATAACCGCAGCTTC 58.619 43.478 0.00 0.00 0.00 3.86
94 95 2.676632 TAAATAACCGCAGCTTCCGA 57.323 45.000 5.17 0.00 0.00 4.55
97 98 1.327690 ATAACCGCAGCTTCCGAGGA 61.328 55.000 5.17 0.00 0.00 3.71
99 100 2.047274 CCGCAGCTTCCGAGGAAA 60.047 61.111 6.01 0.00 33.34 3.13
100 101 2.391389 CCGCAGCTTCCGAGGAAAC 61.391 63.158 6.01 1.57 33.34 2.78
102 103 1.021390 CGCAGCTTCCGAGGAAACAT 61.021 55.000 6.01 0.00 33.34 2.71
104 105 0.449388 CAGCTTCCGAGGAAACATGC 59.551 55.000 6.01 5.95 33.34 4.06
105 106 0.036732 AGCTTCCGAGGAAACATGCA 59.963 50.000 13.78 0.00 33.34 3.96
106 107 0.881118 GCTTCCGAGGAAACATGCAA 59.119 50.000 6.01 0.00 33.34 4.08
107 108 1.135575 GCTTCCGAGGAAACATGCAAG 60.136 52.381 6.01 0.00 33.34 4.01
108 109 2.154462 CTTCCGAGGAAACATGCAAGT 58.846 47.619 6.01 0.00 33.34 3.16
110 111 1.202758 TCCGAGGAAACATGCAAGTGT 60.203 47.619 0.00 0.00 0.00 3.55
111 112 1.608590 CCGAGGAAACATGCAAGTGTT 59.391 47.619 0.00 0.00 43.78 3.32
119 120 4.893424 AACATGCAAGTGTTTCTAACGT 57.107 36.364 0.00 0.00 39.15 3.99
120 121 4.468095 ACATGCAAGTGTTTCTAACGTC 57.532 40.909 0.00 0.00 0.00 4.34
121 122 3.874543 ACATGCAAGTGTTTCTAACGTCA 59.125 39.130 0.00 0.00 0.00 4.35
122 123 4.515191 ACATGCAAGTGTTTCTAACGTCAT 59.485 37.500 0.00 0.00 0.00 3.06
123 124 4.725556 TGCAAGTGTTTCTAACGTCATC 57.274 40.909 0.00 0.00 0.00 2.92
124 125 3.183574 TGCAAGTGTTTCTAACGTCATCG 59.816 43.478 0.00 0.00 43.34 3.84
125 126 3.427528 GCAAGTGTTTCTAACGTCATCGA 59.572 43.478 0.00 0.00 40.62 3.59
126 127 4.084745 GCAAGTGTTTCTAACGTCATCGAA 60.085 41.667 0.00 0.00 40.62 3.71
128 129 3.673809 AGTGTTTCTAACGTCATCGAAGC 59.326 43.478 0.00 0.00 40.62 3.86
152 153 4.751767 AGAAGAGAGCTAGAACAATGGG 57.248 45.455 0.00 0.00 0.00 4.00
164 165 2.616893 AATGGGGCCTGGCAGGTA 60.617 61.111 32.80 17.97 37.80 3.08
246 269 7.707104 TCCAATCTTTTCTGTTTTCTCTGAAC 58.293 34.615 0.00 0.00 0.00 3.18
276 299 2.224281 GCCATTCCCATCGTGATCACTA 60.224 50.000 22.95 13.43 0.00 2.74
309 968 2.093500 TGTTCCATGTGCTACCTGCTAG 60.093 50.000 0.00 0.00 43.37 3.42
310 969 1.866015 TCCATGTGCTACCTGCTAGT 58.134 50.000 0.00 0.00 43.37 2.57
311 970 3.026707 TCCATGTGCTACCTGCTAGTA 57.973 47.619 0.00 0.00 43.37 1.82
319 978 7.361457 TGTGCTACCTGCTAGTAAATCTAAT 57.639 36.000 0.00 0.00 43.37 1.73
422 1096 4.749310 AGCGTCTTCTGCCGGCTG 62.749 66.667 29.70 27.77 31.74 4.85
423 1097 4.742201 GCGTCTTCTGCCGGCTGA 62.742 66.667 29.82 29.82 0.00 4.26
424 1098 2.507992 CGTCTTCTGCCGGCTGAG 60.508 66.667 31.08 24.62 0.00 3.35
425 1099 2.125350 GTCTTCTGCCGGCTGAGG 60.125 66.667 31.47 31.47 0.00 3.86
434 1108 2.672996 CGGCTGAGGGGGTGTTTG 60.673 66.667 0.00 0.00 0.00 2.93
435 1109 2.283173 GGCTGAGGGGGTGTTTGG 60.283 66.667 0.00 0.00 0.00 3.28
436 1110 2.520968 GCTGAGGGGGTGTTTGGT 59.479 61.111 0.00 0.00 0.00 3.67
437 1111 1.152546 GCTGAGGGGGTGTTTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
438 1112 1.179174 GCTGAGGGGGTGTTTGGTTC 61.179 60.000 0.00 0.00 0.00 3.62
439 1113 0.184933 CTGAGGGGGTGTTTGGTTCA 59.815 55.000 0.00 0.00 0.00 3.18
440 1114 0.856982 TGAGGGGGTGTTTGGTTCAT 59.143 50.000 0.00 0.00 0.00 2.57
441 1115 1.256812 GAGGGGGTGTTTGGTTCATG 58.743 55.000 0.00 0.00 0.00 3.07
444 1118 0.966179 GGGGTGTTTGGTTCATGGAC 59.034 55.000 0.00 0.00 0.00 4.02
445 1119 1.480498 GGGGTGTTTGGTTCATGGACT 60.480 52.381 3.62 0.00 0.00 3.85
447 1121 2.698274 GGGTGTTTGGTTCATGGACTTT 59.302 45.455 3.62 0.00 0.00 2.66
448 1122 3.133901 GGGTGTTTGGTTCATGGACTTTT 59.866 43.478 3.62 0.00 0.00 2.27
449 1123 4.383661 GGGTGTTTGGTTCATGGACTTTTT 60.384 41.667 3.62 0.00 0.00 1.94
450 1124 5.163395 GGGTGTTTGGTTCATGGACTTTTTA 60.163 40.000 3.62 0.00 0.00 1.52
451 1125 5.983118 GGTGTTTGGTTCATGGACTTTTTAG 59.017 40.000 3.62 0.00 0.00 1.85
453 1127 6.695713 GTGTTTGGTTCATGGACTTTTTAGTC 59.304 38.462 3.62 0.00 38.04 2.59
473 1147 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
474 1148 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
475 1149 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
476 1150 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
477 1151 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
478 1152 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
479 1153 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
482 1156 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
483 1157 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
484 1158 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
485 1159 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
488 1162 7.589081 AGAAAAAGTCCCTAAAAAGTCCCTAA 58.411 34.615 0.00 0.00 0.00 2.69
492 1166 6.124316 AGTCCCTAAAAAGTCCCTAAGAAC 57.876 41.667 0.00 0.00 0.00 3.01
493 1167 5.013913 AGTCCCTAAAAAGTCCCTAAGAACC 59.986 44.000 0.00 0.00 0.00 3.62
494 1168 4.915194 TCCCTAAAAAGTCCCTAAGAACCA 59.085 41.667 0.00 0.00 0.00 3.67
495 1169 5.373257 TCCCTAAAAAGTCCCTAAGAACCAA 59.627 40.000 0.00 0.00 0.00 3.67
497 1171 6.015688 CCCTAAAAAGTCCCTAAGAACCAAAC 60.016 42.308 0.00 0.00 0.00 2.93
499 1173 2.853235 AGTCCCTAAGAACCAAACGG 57.147 50.000 0.00 0.00 0.00 4.44
500 1174 1.350019 AGTCCCTAAGAACCAAACGGG 59.650 52.381 0.00 0.00 44.81 5.28
501 1175 1.348696 GTCCCTAAGAACCAAACGGGA 59.651 52.381 0.00 0.00 41.15 5.14
504 1178 1.339727 CCTAAGAACCAAACGGGAGGG 60.340 57.143 0.00 0.00 41.15 4.30
505 1179 1.626825 CTAAGAACCAAACGGGAGGGA 59.373 52.381 0.00 0.00 41.15 4.20
506 1180 0.109913 AAGAACCAAACGGGAGGGAC 59.890 55.000 0.00 0.00 41.15 4.46
508 1182 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
509 1183 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
510 1184 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
512 1186 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
514 1188 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
515 1189 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
516 1190 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
517 1191 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
518 1192 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
520 1194 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
521 1195 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
522 1196 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
523 1197 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
524 1198 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
525 1199 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
526 1200 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
527 1201 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
528 1202 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
532 1206 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
534 1208 6.591750 TCTACAGGGACTAGAAAAAGACTG 57.408 41.667 0.00 0.00 36.02 3.51
535 1209 6.075984 TCTACAGGGACTAGAAAAAGACTGT 58.924 40.000 0.00 0.00 36.02 3.55
536 1210 7.236529 TCTACAGGGACTAGAAAAAGACTGTA 58.763 38.462 0.00 0.00 36.02 2.74
541 1215 7.393796 CAGGGACTAGAAAAAGACTGTACTAGA 59.606 40.741 0.00 0.00 36.02 2.43
542 1216 7.612633 AGGGACTAGAAAAAGACTGTACTAGAG 59.387 40.741 0.00 0.00 36.02 2.43
600 1274 8.990163 AAATCTTAGGACTTCTAAACCAAACA 57.010 30.769 0.00 0.00 37.49 2.83
601 1275 7.981102 ATCTTAGGACTTCTAAACCAAACAC 57.019 36.000 0.00 0.00 37.49 3.32
602 1276 6.293698 TCTTAGGACTTCTAAACCAAACACC 58.706 40.000 0.00 0.00 37.49 4.16
603 1277 3.828921 AGGACTTCTAAACCAAACACCC 58.171 45.455 0.00 0.00 0.00 4.61
667 1369 4.618489 CGCTGATTTCTTGAAATGTGAACC 59.382 41.667 12.62 0.00 0.00 3.62
670 1372 6.669125 TGATTTCTTGAAATGTGAACCCAT 57.331 33.333 12.62 0.00 0.00 4.00
734 1445 4.244862 GTGTGCTTTGGTTCCATATTTGG 58.755 43.478 0.00 0.00 45.15 3.28
924 2637 3.822594 TGTTGTTGCTATAAAGGCACG 57.177 42.857 0.00 0.00 39.55 5.34
985 2707 1.214673 ACAGGGGCTACAGAGTATCGA 59.785 52.381 0.00 0.00 42.67 3.59
986 2708 1.609555 CAGGGGCTACAGAGTATCGAC 59.390 57.143 0.00 0.00 42.67 4.20
987 2709 0.960286 GGGGCTACAGAGTATCGACC 59.040 60.000 0.00 0.00 42.67 4.79
988 2710 1.688772 GGGCTACAGAGTATCGACCA 58.311 55.000 0.00 0.00 42.67 4.02
989 2711 2.029623 GGGCTACAGAGTATCGACCAA 58.970 52.381 0.00 0.00 42.67 3.67
999 2721 2.028112 AGTATCGACCAAAGCAGAGCAA 60.028 45.455 0.00 0.00 0.00 3.91
1006 2728 2.165167 CCAAAGCAGAGCAAATGGAGA 58.835 47.619 0.00 0.00 32.31 3.71
1007 2729 2.758979 CCAAAGCAGAGCAAATGGAGAT 59.241 45.455 0.00 0.00 32.31 2.75
1141 2863 1.681327 GAGTACCTCACCGCCCTCA 60.681 63.158 0.00 0.00 0.00 3.86
1185 2907 0.397254 CCCCCTACGTCACCATCTCT 60.397 60.000 0.00 0.00 0.00 3.10
2012 3751 1.441016 GCAAGAGCGGCGACAAAAG 60.441 57.895 12.98 0.00 0.00 2.27
2021 3760 1.605753 GGCGACAAAAGGAAGAAGGT 58.394 50.000 0.00 0.00 0.00 3.50
2076 3815 3.231736 AAGGTGACGCTGTCGGGT 61.232 61.111 4.65 0.00 40.69 5.28
2462 7163 0.698818 GGGGCAGAGGAAAAAGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
2472 7173 4.135306 AGGAAAAAGAGGAAACCGAAGAC 58.865 43.478 0.00 0.00 0.00 3.01
2475 7176 2.435533 AAGAGGAAACCGAAGACGAC 57.564 50.000 0.00 0.00 42.66 4.34
2484 7185 1.494628 CGAAGACGACGACGAGGAA 59.505 57.895 15.32 0.00 42.66 3.36
2487 7188 1.397692 GAAGACGACGACGAGGAAGAT 59.602 52.381 15.32 0.00 42.66 2.40
2492 7199 1.790838 CGACGACGAGGAAGATGACAC 60.791 57.143 0.00 0.00 42.66 3.67
2496 7203 1.546476 GACGAGGAAGATGACACCAGT 59.454 52.381 0.00 0.00 0.00 4.00
2526 7233 5.514169 GAAGAGGAGGAAAATGGGAAGAAT 58.486 41.667 0.00 0.00 0.00 2.40
2530 7237 7.478721 AGAGGAGGAAAATGGGAAGAATAAAA 58.521 34.615 0.00 0.00 0.00 1.52
2531 7238 7.955750 AGAGGAGGAAAATGGGAAGAATAAAAA 59.044 33.333 0.00 0.00 0.00 1.94
2552 7259 7.414814 AAAAATTGTACTTACCCGCAAAATG 57.585 32.000 0.00 0.00 0.00 2.32
2553 7260 4.712122 ATTGTACTTACCCGCAAAATGG 57.288 40.909 0.00 0.00 0.00 3.16
2564 7271 2.939103 CCGCAAAATGGGAAGAGTAGAG 59.061 50.000 0.00 0.00 31.21 2.43
2596 7303 6.228273 ACGCAATGATATCATACTTTTCCG 57.772 37.500 18.47 8.06 35.10 4.30
2597 7304 5.758296 ACGCAATGATATCATACTTTTCCGT 59.242 36.000 18.47 8.69 35.10 4.69
2599 7306 7.602644 ACGCAATGATATCATACTTTTCCGTAT 59.397 33.333 18.47 0.00 35.10 3.06
2614 7321 8.915036 ACTTTTCCGTATGTATCAAGATAGAGT 58.085 33.333 0.00 0.00 0.00 3.24
2615 7322 9.751542 CTTTTCCGTATGTATCAAGATAGAGTT 57.248 33.333 0.00 0.00 0.00 3.01
2619 7326 9.346005 TCCGTATGTATCAAGATAGAGTTAACA 57.654 33.333 8.61 0.00 0.00 2.41
2620 7327 9.613957 CCGTATGTATCAAGATAGAGTTAACAG 57.386 37.037 8.61 0.00 0.00 3.16
2621 7328 9.119329 CGTATGTATCAAGATAGAGTTAACAGC 57.881 37.037 8.61 0.00 0.00 4.40
2646 7353 7.575720 GCATGAAGGCAATAAGAACTTGTACTT 60.576 37.037 0.00 0.00 0.00 2.24
2647 7354 8.946085 CATGAAGGCAATAAGAACTTGTACTTA 58.054 33.333 0.00 0.00 33.97 2.24
2648 7355 8.319143 TGAAGGCAATAAGAACTTGTACTTAC 57.681 34.615 0.00 0.00 32.59 2.34
2649 7356 7.389607 TGAAGGCAATAAGAACTTGTACTTACC 59.610 37.037 0.00 0.00 32.59 2.85
2651 7358 5.064325 GGCAATAAGAACTTGTACTTACCCG 59.936 44.000 0.00 0.00 32.59 5.28
2652 7359 5.446875 GCAATAAGAACTTGTACTTACCCGC 60.447 44.000 0.00 0.00 32.59 6.13
2690 8220 8.084073 ACCAGTACAAAACATCATCAATTTCAG 58.916 33.333 0.00 0.00 0.00 3.02
2712 8242 8.135382 TCAGAAATAGGAGTAACATATAGGCC 57.865 38.462 0.00 0.00 0.00 5.19
2752 8282 7.653713 GTGAGATGATGATACGGTCTACAAAAT 59.346 37.037 0.00 0.00 0.00 1.82
2760 8290 2.747446 ACGGTCTACAAAATGCATCCAC 59.253 45.455 0.00 0.00 0.00 4.02
2770 8300 4.942761 AAATGCATCCACTTGTTTCTGT 57.057 36.364 0.00 0.00 0.00 3.41
2774 8304 3.181488 TGCATCCACTTGTTTCTGTTGTG 60.181 43.478 0.00 0.00 0.00 3.33
2780 8314 7.433708 TCCACTTGTTTCTGTTGTGTATATG 57.566 36.000 0.00 0.00 0.00 1.78
2855 8390 9.961265 CAAATCTATGCATATCAACATCAAGTT 57.039 29.630 6.92 0.00 42.42 2.66
2868 8403 9.696917 ATCAACATCAAGTTTCCAATCTAAAAC 57.303 29.630 0.00 0.00 38.74 2.43
2879 8414 6.418057 TCCAATCTAAAACTTGCAAATGGT 57.582 33.333 0.00 0.00 0.00 3.55
2881 8416 7.601856 TCCAATCTAAAACTTGCAAATGGTAG 58.398 34.615 0.00 0.81 0.00 3.18
2888 8423 4.634012 ACTTGCAAATGGTAGTAGGACA 57.366 40.909 0.00 0.00 0.00 4.02
2903 8439 7.120285 GGTAGTAGGACAAAATAACCAAGGAAC 59.880 40.741 0.00 0.00 0.00 3.62
2905 8441 4.721132 AGGACAAAATAACCAAGGAACGA 58.279 39.130 0.00 0.00 0.00 3.85
2919 8455 3.187700 AGGAACGACGCTAAAATGCTAG 58.812 45.455 0.00 0.00 0.00 3.42
2920 8456 2.928116 GGAACGACGCTAAAATGCTAGT 59.072 45.455 0.00 0.00 0.00 2.57
2921 8457 3.241995 GGAACGACGCTAAAATGCTAGTG 60.242 47.826 0.00 0.00 35.84 2.74
2922 8458 3.226346 ACGACGCTAAAATGCTAGTGA 57.774 42.857 0.00 0.00 34.22 3.41
2923 8459 2.921754 ACGACGCTAAAATGCTAGTGAC 59.078 45.455 0.00 0.00 34.22 3.67
2924 8460 2.921121 CGACGCTAAAATGCTAGTGACA 59.079 45.455 0.00 0.00 34.22 3.58
2925 8461 3.366724 CGACGCTAAAATGCTAGTGACAA 59.633 43.478 0.00 0.00 34.22 3.18
2926 8462 4.490959 CGACGCTAAAATGCTAGTGACAAG 60.491 45.833 0.00 0.00 34.22 3.16
2927 8463 3.684788 ACGCTAAAATGCTAGTGACAAGG 59.315 43.478 0.00 0.00 34.22 3.61
2928 8464 3.684788 CGCTAAAATGCTAGTGACAAGGT 59.315 43.478 0.00 0.00 32.17 3.50
2929 8465 4.154195 CGCTAAAATGCTAGTGACAAGGTT 59.846 41.667 0.00 0.00 32.17 3.50
2930 8466 5.334879 CGCTAAAATGCTAGTGACAAGGTTT 60.335 40.000 0.00 0.00 32.17 3.27
2931 8467 6.086871 GCTAAAATGCTAGTGACAAGGTTTC 58.913 40.000 0.00 0.00 0.00 2.78
2932 8468 5.453567 AAAATGCTAGTGACAAGGTTTCC 57.546 39.130 0.00 0.00 0.00 3.13
2933 8469 2.561478 TGCTAGTGACAAGGTTTCCC 57.439 50.000 0.00 0.00 0.00 3.97
2934 8470 2.054799 TGCTAGTGACAAGGTTTCCCT 58.945 47.619 0.00 0.00 45.63 4.20
2935 8471 3.244582 TGCTAGTGACAAGGTTTCCCTA 58.755 45.455 0.00 0.00 41.56 3.53
2936 8472 3.260884 TGCTAGTGACAAGGTTTCCCTAG 59.739 47.826 0.00 0.00 41.56 3.02
2937 8473 3.261137 GCTAGTGACAAGGTTTCCCTAGT 59.739 47.826 0.00 0.00 41.56 2.57
2938 8474 4.262938 GCTAGTGACAAGGTTTCCCTAGTT 60.263 45.833 0.00 0.00 41.56 2.24
2939 8475 4.790718 AGTGACAAGGTTTCCCTAGTTT 57.209 40.909 0.00 0.00 41.56 2.66
2940 8476 5.899631 AGTGACAAGGTTTCCCTAGTTTA 57.100 39.130 0.00 0.00 41.56 2.01
2941 8477 6.256643 AGTGACAAGGTTTCCCTAGTTTAA 57.743 37.500 0.00 0.00 41.56 1.52
3173 8710 0.846693 GCCCTCCTCTCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
3174 8711 1.202818 GCCCTCCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
3378 8915 2.607750 GAGGAGAGTGTGGGGGCA 60.608 66.667 0.00 0.00 0.00 5.36
3379 8916 2.930562 AGGAGAGTGTGGGGGCAC 60.931 66.667 0.00 0.00 39.51 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.156355 GTCATGGTCTTTGTGCACTTATTG 58.844 41.667 19.41 4.14 0.00 1.90
20 21 4.218417 GGTCATGGTCTTTGTGCACTTATT 59.782 41.667 19.41 0.00 0.00 1.40
21 22 3.758554 GGTCATGGTCTTTGTGCACTTAT 59.241 43.478 19.41 0.00 0.00 1.73
22 23 3.146066 GGTCATGGTCTTTGTGCACTTA 58.854 45.455 19.41 3.02 0.00 2.24
23 24 1.956477 GGTCATGGTCTTTGTGCACTT 59.044 47.619 19.41 0.00 0.00 3.16
26 27 1.887854 CATGGTCATGGTCTTTGTGCA 59.112 47.619 3.17 0.00 35.24 4.57
27 28 2.095059 GTCATGGTCATGGTCTTTGTGC 60.095 50.000 10.61 0.00 39.24 4.57
28 29 2.489329 GGTCATGGTCATGGTCTTTGTG 59.511 50.000 10.61 0.00 39.24 3.33
29 30 2.108075 TGGTCATGGTCATGGTCTTTGT 59.892 45.455 10.61 0.00 39.24 2.83
30 31 2.794103 TGGTCATGGTCATGGTCTTTG 58.206 47.619 10.61 0.00 39.24 2.77
31 32 3.010472 TGATGGTCATGGTCATGGTCTTT 59.990 43.478 10.61 0.00 39.24 2.52
32 33 2.577563 TGATGGTCATGGTCATGGTCTT 59.422 45.455 10.61 2.97 39.24 3.01
33 34 2.199208 TGATGGTCATGGTCATGGTCT 58.801 47.619 10.61 0.00 39.24 3.85
34 35 2.715749 TGATGGTCATGGTCATGGTC 57.284 50.000 10.61 5.21 39.24 4.02
35 36 3.675348 AATGATGGTCATGGTCATGGT 57.325 42.857 10.61 0.00 37.15 3.55
50 51 5.853922 TCTCCTTCCAGATATCCCAAATGAT 59.146 40.000 0.00 0.00 0.00 2.45
53 54 7.895144 TTATCTCCTTCCAGATATCCCAAAT 57.105 36.000 0.00 0.00 35.67 2.32
54 55 7.705912 TTTATCTCCTTCCAGATATCCCAAA 57.294 36.000 0.00 0.00 35.67 3.28
55 56 7.895144 ATTTATCTCCTTCCAGATATCCCAA 57.105 36.000 0.00 0.00 35.67 4.12
57 58 8.268605 GGTTATTTATCTCCTTCCAGATATCCC 58.731 40.741 0.00 0.00 35.67 3.85
58 59 7.982354 CGGTTATTTATCTCCTTCCAGATATCC 59.018 40.741 0.00 0.00 35.67 2.59
60 61 7.038302 TGCGGTTATTTATCTCCTTCCAGATAT 60.038 37.037 0.00 0.00 35.67 1.63
61 62 6.269077 TGCGGTTATTTATCTCCTTCCAGATA 59.731 38.462 0.00 0.00 34.75 1.98
62 63 5.071788 TGCGGTTATTTATCTCCTTCCAGAT 59.928 40.000 0.00 0.00 36.97 2.90
63 64 4.407621 TGCGGTTATTTATCTCCTTCCAGA 59.592 41.667 0.00 0.00 0.00 3.86
64 65 4.703897 TGCGGTTATTTATCTCCTTCCAG 58.296 43.478 0.00 0.00 0.00 3.86
65 66 4.703897 CTGCGGTTATTTATCTCCTTCCA 58.296 43.478 0.00 0.00 0.00 3.53
66 67 3.498777 GCTGCGGTTATTTATCTCCTTCC 59.501 47.826 0.00 0.00 0.00 3.46
67 68 4.381411 AGCTGCGGTTATTTATCTCCTTC 58.619 43.478 0.00 0.00 0.00 3.46
68 69 4.423625 AGCTGCGGTTATTTATCTCCTT 57.576 40.909 0.00 0.00 0.00 3.36
73 74 3.128349 TCGGAAGCTGCGGTTATTTATC 58.872 45.455 0.00 0.00 0.00 1.75
74 75 3.131396 CTCGGAAGCTGCGGTTATTTAT 58.869 45.455 0.00 0.00 0.00 1.40
75 76 2.546778 CTCGGAAGCTGCGGTTATTTA 58.453 47.619 0.00 0.00 0.00 1.40
76 77 1.369625 CTCGGAAGCTGCGGTTATTT 58.630 50.000 0.00 0.00 0.00 1.40
77 78 0.462047 CCTCGGAAGCTGCGGTTATT 60.462 55.000 0.00 0.00 0.00 1.40
79 80 1.537814 TTCCTCGGAAGCTGCGGTTA 61.538 55.000 0.00 0.00 0.00 2.85
80 81 2.391724 TTTCCTCGGAAGCTGCGGTT 62.392 55.000 0.00 0.00 35.38 4.44
81 82 2.879233 TTTCCTCGGAAGCTGCGGT 61.879 57.895 0.00 0.00 35.38 5.68
82 83 2.047274 TTTCCTCGGAAGCTGCGG 60.047 61.111 0.00 0.00 35.38 5.69
83 84 1.021390 ATGTTTCCTCGGAAGCTGCG 61.021 55.000 12.71 0.00 36.51 5.18
85 86 0.449388 GCATGTTTCCTCGGAAGCTG 59.551 55.000 12.71 9.62 36.51 4.24
87 88 0.881118 TTGCATGTTTCCTCGGAAGC 59.119 50.000 5.68 5.68 35.38 3.86
88 89 2.095567 CACTTGCATGTTTCCTCGGAAG 60.096 50.000 1.83 0.00 35.38 3.46
89 90 1.879380 CACTTGCATGTTTCCTCGGAA 59.121 47.619 1.83 0.00 0.00 4.30
90 91 1.202758 ACACTTGCATGTTTCCTCGGA 60.203 47.619 1.83 0.00 0.00 4.55
91 92 1.238439 ACACTTGCATGTTTCCTCGG 58.762 50.000 1.83 0.00 0.00 4.63
99 100 3.874543 TGACGTTAGAAACACTTGCATGT 59.125 39.130 0.00 0.00 0.00 3.21
100 101 4.466567 TGACGTTAGAAACACTTGCATG 57.533 40.909 0.00 0.00 0.00 4.06
102 103 3.183574 CGATGACGTTAGAAACACTTGCA 59.816 43.478 0.00 0.00 34.56 4.08
104 105 5.570262 TTCGATGACGTTAGAAACACTTG 57.430 39.130 0.00 0.00 40.69 3.16
105 106 4.150098 GCTTCGATGACGTTAGAAACACTT 59.850 41.667 1.89 0.00 40.69 3.16
106 107 3.673809 GCTTCGATGACGTTAGAAACACT 59.326 43.478 1.89 0.00 40.69 3.55
107 108 3.673809 AGCTTCGATGACGTTAGAAACAC 59.326 43.478 1.89 0.00 40.69 3.32
108 109 3.909430 AGCTTCGATGACGTTAGAAACA 58.091 40.909 1.89 0.00 40.69 2.83
110 111 5.946298 TCTTAGCTTCGATGACGTTAGAAA 58.054 37.500 1.89 0.00 40.69 2.52
111 112 5.556355 TCTTAGCTTCGATGACGTTAGAA 57.444 39.130 1.89 0.00 40.69 2.10
112 113 5.353400 TCTTCTTAGCTTCGATGACGTTAGA 59.647 40.000 1.89 0.00 40.69 2.10
113 114 5.570344 TCTTCTTAGCTTCGATGACGTTAG 58.430 41.667 1.89 0.00 40.69 2.34
114 115 5.353400 TCTCTTCTTAGCTTCGATGACGTTA 59.647 40.000 1.89 0.00 40.69 3.18
115 116 4.156190 TCTCTTCTTAGCTTCGATGACGTT 59.844 41.667 1.89 0.00 40.69 3.99
116 117 3.690139 TCTCTTCTTAGCTTCGATGACGT 59.310 43.478 1.89 0.00 40.69 4.34
117 118 4.278858 CTCTCTTCTTAGCTTCGATGACG 58.721 47.826 1.89 0.00 41.26 4.35
119 120 3.951037 AGCTCTCTTCTTAGCTTCGATGA 59.049 43.478 1.89 0.00 46.82 2.92
120 121 4.305989 AGCTCTCTTCTTAGCTTCGATG 57.694 45.455 0.00 0.00 46.82 3.84
121 122 5.373222 TCTAGCTCTCTTCTTAGCTTCGAT 58.627 41.667 1.72 0.00 46.82 3.59
122 123 4.771903 TCTAGCTCTCTTCTTAGCTTCGA 58.228 43.478 1.72 0.00 46.82 3.71
123 124 5.163703 TGTTCTAGCTCTCTTCTTAGCTTCG 60.164 44.000 1.72 0.00 46.82 3.79
124 125 6.202516 TGTTCTAGCTCTCTTCTTAGCTTC 57.797 41.667 1.72 0.00 46.82 3.86
125 126 6.597832 TTGTTCTAGCTCTCTTCTTAGCTT 57.402 37.500 1.72 0.00 46.82 3.74
128 129 6.279882 CCCATTGTTCTAGCTCTCTTCTTAG 58.720 44.000 0.00 0.00 0.00 2.18
152 153 1.250840 CCTTTTGTACCTGCCAGGCC 61.251 60.000 11.63 1.92 39.63 5.19
201 202 3.306613 GAAGGGCACACTAGGGTACTAT 58.693 50.000 0.00 0.00 0.00 2.12
203 204 1.569653 GAAGGGCACACTAGGGTACT 58.430 55.000 0.00 0.00 0.00 2.73
204 205 0.540454 GGAAGGGCACACTAGGGTAC 59.460 60.000 0.00 0.00 0.00 3.34
205 206 0.117541 TGGAAGGGCACACTAGGGTA 59.882 55.000 0.00 0.00 0.00 3.69
246 269 2.159198 CGATGGGAATGGCAAGGAAAAG 60.159 50.000 0.00 0.00 0.00 2.27
285 308 2.159338 GCAGGTAGCACATGGAACATTG 60.159 50.000 0.00 0.00 44.24 2.82
309 968 9.651718 CGTTAGATTTGGCTTCATTAGATTTAC 57.348 33.333 0.00 0.00 0.00 2.01
310 969 9.607988 TCGTTAGATTTGGCTTCATTAGATTTA 57.392 29.630 0.00 0.00 0.00 1.40
311 970 8.506168 TCGTTAGATTTGGCTTCATTAGATTT 57.494 30.769 0.00 0.00 0.00 2.17
319 978 2.747446 GGCTTCGTTAGATTTGGCTTCA 59.253 45.455 0.00 0.00 0.00 3.02
373 1032 0.260523 ATGTGTTAAATCCCCGGGGG 59.739 55.000 39.51 27.32 46.11 5.40
374 1033 1.398692 CATGTGTTAAATCCCCGGGG 58.601 55.000 35.80 35.80 0.00 5.73
375 1034 1.398692 CCATGTGTTAAATCCCCGGG 58.601 55.000 15.80 15.80 0.00 5.73
376 1035 1.398692 CCCATGTGTTAAATCCCCGG 58.601 55.000 0.00 0.00 0.00 5.73
420 1094 0.184933 TGAACCAAACACCCCCTCAG 59.815 55.000 0.00 0.00 0.00 3.35
422 1096 1.256812 CATGAACCAAACACCCCCTC 58.743 55.000 0.00 0.00 0.00 4.30
423 1097 0.178935 CCATGAACCAAACACCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
424 1098 0.178947 TCCATGAACCAAACACCCCC 60.179 55.000 0.00 0.00 0.00 5.40
425 1099 0.966179 GTCCATGAACCAAACACCCC 59.034 55.000 0.00 0.00 0.00 4.95
428 1102 6.569780 ACTAAAAAGTCCATGAACCAAACAC 58.430 36.000 0.00 0.00 0.00 3.32
451 1125 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
453 1127 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
457 1131 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
458 1132 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
460 1134 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
461 1135 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
462 1136 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
463 1137 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
467 1141 6.775234 TCTTAGGGACTTTTTAGGGACTTT 57.225 37.500 0.00 0.00 39.49 2.66
468 1142 6.466904 GGTTCTTAGGGACTTTTTAGGGACTT 60.467 42.308 0.00 0.00 39.49 3.01
469 1143 5.013913 GGTTCTTAGGGACTTTTTAGGGACT 59.986 44.000 0.00 0.00 41.75 3.85
471 1145 4.915194 TGGTTCTTAGGGACTTTTTAGGGA 59.085 41.667 0.00 0.00 41.75 4.20
472 1146 5.251182 TGGTTCTTAGGGACTTTTTAGGG 57.749 43.478 0.00 0.00 41.75 3.53
473 1147 6.293790 CGTTTGGTTCTTAGGGACTTTTTAGG 60.294 42.308 0.00 0.00 41.75 2.69
474 1148 6.293790 CCGTTTGGTTCTTAGGGACTTTTTAG 60.294 42.308 0.00 0.00 41.75 1.85
475 1149 5.532032 CCGTTTGGTTCTTAGGGACTTTTTA 59.468 40.000 0.00 0.00 41.75 1.52
476 1150 4.340097 CCGTTTGGTTCTTAGGGACTTTTT 59.660 41.667 0.00 0.00 41.75 1.94
477 1151 3.887110 CCGTTTGGTTCTTAGGGACTTTT 59.113 43.478 0.00 0.00 41.75 2.27
478 1152 3.483421 CCGTTTGGTTCTTAGGGACTTT 58.517 45.455 0.00 0.00 41.75 2.66
479 1153 2.224695 CCCGTTTGGTTCTTAGGGACTT 60.225 50.000 0.00 0.00 41.26 3.01
482 1156 1.626825 CTCCCGTTTGGTTCTTAGGGA 59.373 52.381 0.80 0.80 44.85 4.20
483 1157 1.339727 CCTCCCGTTTGGTTCTTAGGG 60.340 57.143 0.00 0.00 40.16 3.53
484 1158 1.339727 CCCTCCCGTTTGGTTCTTAGG 60.340 57.143 0.00 0.00 34.77 2.69
485 1159 1.626825 TCCCTCCCGTTTGGTTCTTAG 59.373 52.381 0.00 0.00 34.77 2.18
488 1162 0.767060 AGTCCCTCCCGTTTGGTTCT 60.767 55.000 0.00 0.00 34.77 3.01
492 1166 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
493 1167 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
494 1168 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
495 1169 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
497 1171 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
499 1173 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
500 1174 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
501 1175 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
509 1183 7.070821 ACAGTCTTTTTCTAGTCCCTGTAGAAA 59.929 37.037 1.96 1.96 42.24 2.52
510 1184 6.553852 ACAGTCTTTTTCTAGTCCCTGTAGAA 59.446 38.462 0.00 0.00 35.21 2.10
512 1186 6.347859 ACAGTCTTTTTCTAGTCCCTGTAG 57.652 41.667 0.00 0.00 0.00 2.74
514 1188 5.839606 AGTACAGTCTTTTTCTAGTCCCTGT 59.160 40.000 0.00 0.00 0.00 4.00
515 1189 6.347859 AGTACAGTCTTTTTCTAGTCCCTG 57.652 41.667 0.00 0.00 0.00 4.45
516 1190 7.468496 TCTAGTACAGTCTTTTTCTAGTCCCT 58.532 38.462 0.00 0.00 0.00 4.20
517 1191 7.611079 TCTCTAGTACAGTCTTTTTCTAGTCCC 59.389 40.741 0.00 0.00 0.00 4.46
518 1192 8.564509 TCTCTAGTACAGTCTTTTTCTAGTCC 57.435 38.462 0.00 0.00 0.00 3.85
574 1248 9.416284 TGTTTGGTTTAGAAGTCCTAAGATTTT 57.584 29.630 0.00 0.00 38.48 1.82
576 1250 7.447545 GGTGTTTGGTTTAGAAGTCCTAAGATT 59.552 37.037 0.00 0.00 38.48 2.40
577 1251 6.940867 GGTGTTTGGTTTAGAAGTCCTAAGAT 59.059 38.462 0.00 0.00 38.48 2.40
579 1253 5.472478 GGGTGTTTGGTTTAGAAGTCCTAAG 59.528 44.000 0.00 0.00 38.48 2.18
580 1254 5.379187 GGGTGTTTGGTTTAGAAGTCCTAA 58.621 41.667 0.00 0.00 35.66 2.69
582 1256 3.436035 GGGGTGTTTGGTTTAGAAGTCCT 60.436 47.826 0.00 0.00 0.00 3.85
584 1258 2.889045 GGGGGTGTTTGGTTTAGAAGTC 59.111 50.000 0.00 0.00 0.00 3.01
585 1259 2.516702 AGGGGGTGTTTGGTTTAGAAGT 59.483 45.455 0.00 0.00 0.00 3.01
586 1260 2.890945 CAGGGGGTGTTTGGTTTAGAAG 59.109 50.000 0.00 0.00 0.00 2.85
587 1261 2.514582 TCAGGGGGTGTTTGGTTTAGAA 59.485 45.455 0.00 0.00 0.00 2.10
588 1262 2.136863 TCAGGGGGTGTTTGGTTTAGA 58.863 47.619 0.00 0.00 0.00 2.10
589 1263 2.668144 TCAGGGGGTGTTTGGTTTAG 57.332 50.000 0.00 0.00 0.00 1.85
591 1265 2.325484 GATTCAGGGGGTGTTTGGTTT 58.675 47.619 0.00 0.00 0.00 3.27
592 1266 1.482365 GGATTCAGGGGGTGTTTGGTT 60.482 52.381 0.00 0.00 0.00 3.67
593 1267 0.114364 GGATTCAGGGGGTGTTTGGT 59.886 55.000 0.00 0.00 0.00 3.67
594 1268 0.114168 TGGATTCAGGGGGTGTTTGG 59.886 55.000 0.00 0.00 0.00 3.28
595 1269 2.008242 TTGGATTCAGGGGGTGTTTG 57.992 50.000 0.00 0.00 0.00 2.93
596 1270 2.111613 TCATTGGATTCAGGGGGTGTTT 59.888 45.455 0.00 0.00 0.00 2.83
597 1271 1.715931 TCATTGGATTCAGGGGGTGTT 59.284 47.619 0.00 0.00 0.00 3.32
599 1273 1.767759 GTCATTGGATTCAGGGGGTG 58.232 55.000 0.00 0.00 0.00 4.61
600 1274 0.255890 CGTCATTGGATTCAGGGGGT 59.744 55.000 0.00 0.00 0.00 4.95
601 1275 1.103398 GCGTCATTGGATTCAGGGGG 61.103 60.000 0.00 0.00 0.00 5.40
602 1276 1.439353 CGCGTCATTGGATTCAGGGG 61.439 60.000 0.00 0.00 0.00 4.79
603 1277 0.744414 ACGCGTCATTGGATTCAGGG 60.744 55.000 5.58 0.00 0.00 4.45
637 1311 3.417069 TCAAGAAATCAGCGGGAAAGA 57.583 42.857 0.00 0.00 0.00 2.52
638 1312 4.503741 TTTCAAGAAATCAGCGGGAAAG 57.496 40.909 0.00 0.00 0.00 2.62
646 1348 6.088016 TGGGTTCACATTTCAAGAAATCAG 57.912 37.500 5.11 2.15 38.84 2.90
667 1369 3.599343 CATCGGTCCACATATACCATGG 58.401 50.000 11.19 11.19 35.35 3.66
670 1372 1.974957 CCCATCGGTCCACATATACCA 59.025 52.381 0.00 0.00 35.35 3.25
710 1421 5.295950 CAAATATGGAACCAAAGCACACAA 58.704 37.500 0.00 0.00 0.00 3.33
734 1445 4.835284 TTGGAAATAAAATGGCCCTTCC 57.165 40.909 0.00 1.82 34.23 3.46
857 2570 2.884639 CTCAAACCAACCATTCTTCGGT 59.115 45.455 0.00 0.00 38.85 4.69
895 2608 1.374560 TAGCAACAACAACACACGCT 58.625 45.000 0.00 0.00 0.00 5.07
907 2620 0.724549 CGCGTGCCTTTATAGCAACA 59.275 50.000 0.00 0.00 43.02 3.33
985 2707 1.891150 CTCCATTTGCTCTGCTTTGGT 59.109 47.619 0.00 0.00 0.00 3.67
986 2708 2.165167 TCTCCATTTGCTCTGCTTTGG 58.835 47.619 0.00 0.00 0.00 3.28
987 2709 3.442625 TCATCTCCATTTGCTCTGCTTTG 59.557 43.478 0.00 0.00 0.00 2.77
988 2710 3.693807 TCATCTCCATTTGCTCTGCTTT 58.306 40.909 0.00 0.00 0.00 3.51
989 2711 3.361281 TCATCTCCATTTGCTCTGCTT 57.639 42.857 0.00 0.00 0.00 3.91
999 2721 1.302033 GCCGGCGATCATCTCCATT 60.302 57.895 12.58 0.00 0.00 3.16
1074 2796 3.041211 CACCATGGACCAGAGGAAGATA 58.959 50.000 21.47 0.00 0.00 1.98
2012 3751 4.468689 CCGGCGGGACCTTCTTCC 62.469 72.222 20.56 0.00 35.61 3.46
2039 3778 1.673920 TGTTTTCTTCGTCCTTGCCAC 59.326 47.619 0.00 0.00 0.00 5.01
2040 3779 2.045561 TGTTTTCTTCGTCCTTGCCA 57.954 45.000 0.00 0.00 0.00 4.92
2076 3815 2.161410 CCCGTCGATGAAATTGAGCAAA 59.839 45.455 6.11 0.00 37.42 3.68
2211 6911 0.528470 AGGACTCGAAGCAGCAGTAC 59.472 55.000 0.00 0.00 0.00 2.73
2452 7153 3.805971 TCGTCTTCGGTTTCCTCTTTTTC 59.194 43.478 0.00 0.00 37.69 2.29
2454 7155 3.129109 GTCGTCTTCGGTTTCCTCTTTT 58.871 45.455 0.00 0.00 37.69 2.27
2455 7156 2.752121 GTCGTCTTCGGTTTCCTCTTT 58.248 47.619 0.00 0.00 37.69 2.52
2462 7163 0.385223 CTCGTCGTCGTCTTCGGTTT 60.385 55.000 1.33 0.00 38.33 3.27
2472 7173 0.446616 TGTCATCTTCCTCGTCGTCG 59.553 55.000 0.00 0.00 38.55 5.12
2475 7176 0.526211 TGGTGTCATCTTCCTCGTCG 59.474 55.000 0.00 0.00 0.00 5.12
2484 7185 0.109086 CGCTCGAACTGGTGTCATCT 60.109 55.000 0.00 0.00 0.00 2.90
2487 7188 0.318699 CTTCGCTCGAACTGGTGTCA 60.319 55.000 0.02 0.00 0.00 3.58
2492 7199 0.179150 CTCCTCTTCGCTCGAACTGG 60.179 60.000 0.02 6.44 0.00 4.00
2496 7203 1.254026 TTTCCTCCTCTTCGCTCGAA 58.746 50.000 4.58 4.58 0.00 3.71
2530 7237 5.474825 CCATTTTGCGGGTAAGTACAATTT 58.525 37.500 0.00 0.00 0.00 1.82
2531 7238 4.081917 CCCATTTTGCGGGTAAGTACAATT 60.082 41.667 0.00 0.00 39.05 2.32
2532 7239 3.445805 CCCATTTTGCGGGTAAGTACAAT 59.554 43.478 0.00 0.00 39.05 2.71
2533 7240 2.820787 CCCATTTTGCGGGTAAGTACAA 59.179 45.455 0.00 0.00 39.05 2.41
2534 7241 2.040012 TCCCATTTTGCGGGTAAGTACA 59.960 45.455 0.00 0.00 44.81 2.90
2535 7242 2.713877 TCCCATTTTGCGGGTAAGTAC 58.286 47.619 0.00 0.00 44.81 2.73
2536 7243 3.009253 TCTTCCCATTTTGCGGGTAAGTA 59.991 43.478 0.00 0.00 44.81 2.24
2537 7244 2.167662 CTTCCCATTTTGCGGGTAAGT 58.832 47.619 0.00 0.00 44.81 2.24
2538 7245 2.423538 CTCTTCCCATTTTGCGGGTAAG 59.576 50.000 0.00 0.00 44.81 2.34
2539 7246 2.224917 ACTCTTCCCATTTTGCGGGTAA 60.225 45.455 0.00 0.00 44.81 2.85
2540 7247 1.353022 ACTCTTCCCATTTTGCGGGTA 59.647 47.619 0.00 0.00 44.81 3.69
2541 7248 0.112412 ACTCTTCCCATTTTGCGGGT 59.888 50.000 0.00 0.00 44.81 5.28
2542 7249 2.017049 CTACTCTTCCCATTTTGCGGG 58.983 52.381 0.00 0.00 46.03 6.13
2543 7250 2.939103 CTCTACTCTTCCCATTTTGCGG 59.061 50.000 0.00 0.00 0.00 5.69
2544 7251 3.372206 CACTCTACTCTTCCCATTTTGCG 59.628 47.826 0.00 0.00 0.00 4.85
2545 7252 4.579869 TCACTCTACTCTTCCCATTTTGC 58.420 43.478 0.00 0.00 0.00 3.68
2549 7256 9.179909 CGTATATATCACTCTACTCTTCCCATT 57.820 37.037 0.00 0.00 0.00 3.16
2550 7257 7.283580 GCGTATATATCACTCTACTCTTCCCAT 59.716 40.741 0.00 0.00 0.00 4.00
2551 7258 6.598457 GCGTATATATCACTCTACTCTTCCCA 59.402 42.308 0.00 0.00 0.00 4.37
2552 7259 6.598457 TGCGTATATATCACTCTACTCTTCCC 59.402 42.308 0.00 0.00 0.00 3.97
2553 7260 7.612668 TGCGTATATATCACTCTACTCTTCC 57.387 40.000 0.00 0.00 0.00 3.46
2589 7296 9.751542 AACTCTATCTTGATACATACGGAAAAG 57.248 33.333 0.00 0.00 0.00 2.27
2594 7301 9.613957 CTGTTAACTCTATCTTGATACATACGG 57.386 37.037 7.22 0.00 0.00 4.02
2595 7302 9.119329 GCTGTTAACTCTATCTTGATACATACG 57.881 37.037 7.22 0.00 0.00 3.06
2596 7303 9.967346 TGCTGTTAACTCTATCTTGATACATAC 57.033 33.333 7.22 0.00 0.00 2.39
2599 7306 8.695456 TCATGCTGTTAACTCTATCTTGATACA 58.305 33.333 7.22 0.00 0.00 2.29
2603 7310 7.044181 CCTTCATGCTGTTAACTCTATCTTGA 58.956 38.462 7.22 3.29 0.00 3.02
2604 7311 6.238320 GCCTTCATGCTGTTAACTCTATCTTG 60.238 42.308 7.22 1.26 0.00 3.02
2605 7312 5.819901 GCCTTCATGCTGTTAACTCTATCTT 59.180 40.000 7.22 0.00 0.00 2.40
2606 7313 5.104776 TGCCTTCATGCTGTTAACTCTATCT 60.105 40.000 7.22 0.00 0.00 1.98
2607 7314 5.118990 TGCCTTCATGCTGTTAACTCTATC 58.881 41.667 7.22 0.00 0.00 2.08
2610 7317 3.423539 TGCCTTCATGCTGTTAACTCT 57.576 42.857 7.22 0.00 0.00 3.24
2611 7318 4.708726 ATTGCCTTCATGCTGTTAACTC 57.291 40.909 7.22 0.00 0.00 3.01
2612 7319 5.945784 TCTTATTGCCTTCATGCTGTTAACT 59.054 36.000 7.22 0.00 0.00 2.24
2613 7320 6.194796 TCTTATTGCCTTCATGCTGTTAAC 57.805 37.500 0.00 0.00 0.00 2.01
2614 7321 6.434028 AGTTCTTATTGCCTTCATGCTGTTAA 59.566 34.615 0.00 0.00 0.00 2.01
2615 7322 5.945784 AGTTCTTATTGCCTTCATGCTGTTA 59.054 36.000 0.00 0.00 0.00 2.41
2616 7323 4.768968 AGTTCTTATTGCCTTCATGCTGTT 59.231 37.500 0.00 0.00 0.00 3.16
2617 7324 4.338879 AGTTCTTATTGCCTTCATGCTGT 58.661 39.130 0.00 0.00 0.00 4.40
2618 7325 4.978083 AGTTCTTATTGCCTTCATGCTG 57.022 40.909 0.00 0.00 0.00 4.41
2619 7326 4.768968 ACAAGTTCTTATTGCCTTCATGCT 59.231 37.500 0.00 0.00 0.00 3.79
2620 7327 5.064441 ACAAGTTCTTATTGCCTTCATGC 57.936 39.130 0.00 0.00 0.00 4.06
2621 7328 7.383102 AGTACAAGTTCTTATTGCCTTCATG 57.617 36.000 0.00 0.00 0.00 3.07
2666 8196 9.681692 TTCTGAAATTGATGATGTTTTGTACTG 57.318 29.630 0.00 0.00 0.00 2.74
2690 8220 6.214819 TGGGGCCTATATGTTACTCCTATTTC 59.785 42.308 0.84 0.00 0.00 2.17
2693 8223 5.299824 TGGGGCCTATATGTTACTCCTAT 57.700 43.478 0.84 0.00 0.00 2.57
2699 8229 3.146847 GTGCTTGGGGCCTATATGTTAC 58.853 50.000 0.84 0.00 40.92 2.50
2703 8233 2.363306 TTGTGCTTGGGGCCTATATG 57.637 50.000 0.84 0.00 40.92 1.78
2707 8237 1.265236 CATTTTGTGCTTGGGGCCTA 58.735 50.000 0.84 0.00 40.92 3.93
2733 8263 5.984233 TGCATTTTGTAGACCGTATCATC 57.016 39.130 0.00 0.00 0.00 2.92
2739 8269 2.747446 GTGGATGCATTTTGTAGACCGT 59.253 45.455 0.00 0.00 0.00 4.83
2740 8270 3.009723 AGTGGATGCATTTTGTAGACCG 58.990 45.455 0.00 0.00 0.00 4.79
2752 8282 3.023119 ACAACAGAAACAAGTGGATGCA 58.977 40.909 0.00 0.00 0.00 3.96
2803 8338 9.871238 GTCTAGTGAAGATTGTCCAAATACTAA 57.129 33.333 0.00 0.00 36.36 2.24
2804 8339 9.031537 TGTCTAGTGAAGATTGTCCAAATACTA 57.968 33.333 0.00 0.00 36.36 1.82
2805 8340 7.907389 TGTCTAGTGAAGATTGTCCAAATACT 58.093 34.615 0.00 0.00 36.36 2.12
2806 8341 8.547967 TTGTCTAGTGAAGATTGTCCAAATAC 57.452 34.615 0.00 0.00 36.36 1.89
2818 8353 9.920133 GATATGCATAGATTTGTCTAGTGAAGA 57.080 33.333 12.79 0.00 0.00 2.87
2855 8390 6.825610 ACCATTTGCAAGTTTTAGATTGGAA 58.174 32.000 0.00 0.00 35.33 3.53
2856 8391 6.418057 ACCATTTGCAAGTTTTAGATTGGA 57.582 33.333 0.00 0.00 0.00 3.53
2865 8400 5.381757 TGTCCTACTACCATTTGCAAGTTT 58.618 37.500 0.00 0.00 0.00 2.66
2868 8403 5.957842 TTTGTCCTACTACCATTTGCAAG 57.042 39.130 0.00 0.00 0.00 4.01
2875 8410 7.037153 TCCTTGGTTATTTTGTCCTACTACCAT 60.037 37.037 0.00 0.00 34.67 3.55
2876 8411 6.272792 TCCTTGGTTATTTTGTCCTACTACCA 59.727 38.462 0.00 0.00 32.93 3.25
2879 8414 6.875195 CGTTCCTTGGTTATTTTGTCCTACTA 59.125 38.462 0.00 0.00 0.00 1.82
2881 8416 5.702209 TCGTTCCTTGGTTATTTTGTCCTAC 59.298 40.000 0.00 0.00 0.00 3.18
2888 8423 3.143728 AGCGTCGTTCCTTGGTTATTTT 58.856 40.909 0.00 0.00 0.00 1.82
2903 8439 2.921121 TGTCACTAGCATTTTAGCGTCG 59.079 45.455 0.00 0.00 40.15 5.12
2905 8441 3.684788 CCTTGTCACTAGCATTTTAGCGT 59.315 43.478 0.00 0.00 40.15 5.07
2941 8477 9.533831 ACTTCTTCAGGGTTTATATGTTCAATT 57.466 29.630 0.00 0.00 0.00 2.32
3173 8710 0.106619 GGAGAGAGAGGGGTTAGCGA 60.107 60.000 0.00 0.00 0.00 4.93
3174 8711 1.110518 GGGAGAGAGAGGGGTTAGCG 61.111 65.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.