Multiple sequence alignment - TraesCS1B01G267600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G267600 chr1B 100.000 3074 0 0 1 3074 470694018 470697091 0.000000e+00 5677
1 TraesCS1B01G267600 chr1B 86.358 1752 130 55 524 2235 470942270 470940588 0.000000e+00 1810
2 TraesCS1B01G267600 chr1B 97.036 506 13 2 2570 3074 48793268 48792764 0.000000e+00 850
3 TraesCS1B01G267600 chr1B 96.838 506 15 1 2569 3074 470703166 470703670 0.000000e+00 845
4 TraesCS1B01G267600 chr1B 96.832 505 15 1 2570 3074 642062592 642062089 0.000000e+00 843
5 TraesCS1B01G267600 chr1B 88.514 148 15 2 2406 2552 583406401 583406547 8.760000e-41 178
6 TraesCS1B01G267600 chr1B 87.970 133 16 0 1 133 470644061 470644193 1.140000e-34 158
7 TraesCS1B01G267600 chr1A 87.681 2135 142 45 167 2240 449506422 449508496 0.000000e+00 2374
8 TraesCS1B01G267600 chr1A 91.121 1329 82 12 759 2082 449666450 449665153 0.000000e+00 1768
9 TraesCS1B01G267600 chr1A 96.654 508 15 2 2569 3074 38873451 38872944 0.000000e+00 843
10 TraesCS1B01G267600 chr1A 96.654 508 15 2 2569 3074 508572498 508573005 0.000000e+00 843
11 TraesCS1B01G267600 chr1A 96.647 507 14 3 2569 3074 508578916 508579420 0.000000e+00 839
12 TraesCS1B01G267600 chr1D 92.753 1642 71 21 498 2113 348984252 348985871 0.000000e+00 2329
13 TraesCS1B01G267600 chr1D 91.057 1409 96 14 723 2122 349341844 349340457 0.000000e+00 1877
14 TraesCS1B01G267600 chr1D 86.957 184 12 3 2069 2240 348986094 348986277 2.420000e-46 196
15 TraesCS1B01G267600 chr1D 88.158 152 14 2 2405 2552 23372046 23371895 8.760000e-41 178
16 TraesCS1B01G267600 chr1D 92.857 84 6 0 2324 2407 348986431 348986514 4.160000e-24 122
17 TraesCS1B01G267600 chrUn 87.295 1708 139 46 453 2122 7150955 7149288 0.000000e+00 1881
18 TraesCS1B01G267600 chr4A 97.036 506 11 1 2569 3074 651598064 651597563 0.000000e+00 848
19 TraesCS1B01G267600 chr3B 96.654 508 14 3 2569 3074 173104894 173105400 0.000000e+00 841
20 TraesCS1B01G267600 chr3B 96.101 513 17 3 2564 3074 173098461 173098972 0.000000e+00 833
21 TraesCS1B01G267600 chr3B 88.811 143 15 1 2410 2552 142248120 142248261 1.130000e-39 174
22 TraesCS1B01G267600 chr2D 89.542 153 12 2 2404 2552 630131403 630131555 1.130000e-44 191
23 TraesCS1B01G267600 chr3D 88.158 152 14 3 2405 2552 83491888 83492039 8.760000e-41 178
24 TraesCS1B01G267600 chr2B 88.514 148 15 2 2406 2552 446108875 446108729 8.760000e-41 178
25 TraesCS1B01G267600 chr4D 86.928 153 16 4 2404 2552 466669247 466669399 5.270000e-38 169
26 TraesCS1B01G267600 chr6D 85.030 167 19 4 2405 2569 1486633 1486471 6.820000e-37 165
27 TraesCS1B01G267600 chr2A 85.806 155 19 3 2401 2552 656999297 656999451 8.820000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G267600 chr1B 470694018 470697091 3073 False 5677.000000 5677 100.000000 1 3074 1 chr1B.!!$F2 3073
1 TraesCS1B01G267600 chr1B 470940588 470942270 1682 True 1810.000000 1810 86.358000 524 2235 1 chr1B.!!$R2 1711
2 TraesCS1B01G267600 chr1B 48792764 48793268 504 True 850.000000 850 97.036000 2570 3074 1 chr1B.!!$R1 504
3 TraesCS1B01G267600 chr1B 470703166 470703670 504 False 845.000000 845 96.838000 2569 3074 1 chr1B.!!$F3 505
4 TraesCS1B01G267600 chr1B 642062089 642062592 503 True 843.000000 843 96.832000 2570 3074 1 chr1B.!!$R3 504
5 TraesCS1B01G267600 chr1A 449506422 449508496 2074 False 2374.000000 2374 87.681000 167 2240 1 chr1A.!!$F1 2073
6 TraesCS1B01G267600 chr1A 449665153 449666450 1297 True 1768.000000 1768 91.121000 759 2082 1 chr1A.!!$R2 1323
7 TraesCS1B01G267600 chr1A 38872944 38873451 507 True 843.000000 843 96.654000 2569 3074 1 chr1A.!!$R1 505
8 TraesCS1B01G267600 chr1A 508572498 508573005 507 False 843.000000 843 96.654000 2569 3074 1 chr1A.!!$F2 505
9 TraesCS1B01G267600 chr1A 508578916 508579420 504 False 839.000000 839 96.647000 2569 3074 1 chr1A.!!$F3 505
10 TraesCS1B01G267600 chr1D 349340457 349341844 1387 True 1877.000000 1877 91.057000 723 2122 1 chr1D.!!$R2 1399
11 TraesCS1B01G267600 chr1D 348984252 348986514 2262 False 882.333333 2329 90.855667 498 2407 3 chr1D.!!$F1 1909
12 TraesCS1B01G267600 chrUn 7149288 7150955 1667 True 1881.000000 1881 87.295000 453 2122 1 chrUn.!!$R1 1669
13 TraesCS1B01G267600 chr4A 651597563 651598064 501 True 848.000000 848 97.036000 2569 3074 1 chr4A.!!$R1 505
14 TraesCS1B01G267600 chr3B 173104894 173105400 506 False 841.000000 841 96.654000 2569 3074 1 chr3B.!!$F3 505
15 TraesCS1B01G267600 chr3B 173098461 173098972 511 False 833.000000 833 96.101000 2564 3074 1 chr3B.!!$F2 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.034670 GCTCAAGCACCCATCTCCTT 60.035 55.0 0.0 0.0 41.59 3.36 F
33 34 0.036010 CAAGCACCCATCTCCTTCGT 60.036 55.0 0.0 0.0 0.00 3.85 F
1080 1190 0.245813 GTAAGGTGGTGGACGAGGTC 59.754 60.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1811 1.826054 CGTCTCCTCCAGCTCGGAT 60.826 63.158 5.50 0.00 45.19 4.18 R
1998 2114 2.355115 GTGGTGGGGTCCATGTCC 59.645 66.667 0.00 0.00 39.81 4.02 R
2419 2906 0.095589 CGAAGTCTCAGTCGACCGAG 59.904 60.000 20.59 20.59 39.64 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.512516 GCCGCTCAAGCACCCATC 61.513 66.667 2.50 0.00 42.21 3.51
26 27 2.270205 CCGCTCAAGCACCCATCT 59.730 61.111 2.50 0.00 42.21 2.90
27 28 1.817099 CCGCTCAAGCACCCATCTC 60.817 63.158 2.50 0.00 42.21 2.75
28 29 1.817099 CGCTCAAGCACCCATCTCC 60.817 63.158 2.50 0.00 42.21 3.71
29 30 1.606531 GCTCAAGCACCCATCTCCT 59.393 57.895 0.00 0.00 41.59 3.69
30 31 0.034670 GCTCAAGCACCCATCTCCTT 60.035 55.000 0.00 0.00 41.59 3.36
31 32 2.016096 GCTCAAGCACCCATCTCCTTC 61.016 57.143 0.00 0.00 41.59 3.46
32 33 0.250234 TCAAGCACCCATCTCCTTCG 59.750 55.000 0.00 0.00 0.00 3.79
33 34 0.036010 CAAGCACCCATCTCCTTCGT 60.036 55.000 0.00 0.00 0.00 3.85
34 35 0.693049 AAGCACCCATCTCCTTCGTT 59.307 50.000 0.00 0.00 0.00 3.85
35 36 1.568504 AGCACCCATCTCCTTCGTTA 58.431 50.000 0.00 0.00 0.00 3.18
36 37 2.119495 AGCACCCATCTCCTTCGTTAT 58.881 47.619 0.00 0.00 0.00 1.89
37 38 2.103263 AGCACCCATCTCCTTCGTTATC 59.897 50.000 0.00 0.00 0.00 1.75
38 39 2.807108 GCACCCATCTCCTTCGTTATCC 60.807 54.545 0.00 0.00 0.00 2.59
39 40 2.700897 CACCCATCTCCTTCGTTATCCT 59.299 50.000 0.00 0.00 0.00 3.24
40 41 3.895656 CACCCATCTCCTTCGTTATCCTA 59.104 47.826 0.00 0.00 0.00 2.94
41 42 3.896272 ACCCATCTCCTTCGTTATCCTAC 59.104 47.826 0.00 0.00 0.00 3.18
42 43 3.895656 CCCATCTCCTTCGTTATCCTACA 59.104 47.826 0.00 0.00 0.00 2.74
43 44 4.344102 CCCATCTCCTTCGTTATCCTACAA 59.656 45.833 0.00 0.00 0.00 2.41
44 45 5.012148 CCCATCTCCTTCGTTATCCTACAAT 59.988 44.000 0.00 0.00 0.00 2.71
45 46 6.210784 CCCATCTCCTTCGTTATCCTACAATA 59.789 42.308 0.00 0.00 0.00 1.90
46 47 7.256190 CCCATCTCCTTCGTTATCCTACAATAA 60.256 40.741 0.00 0.00 0.00 1.40
47 48 7.599245 CCATCTCCTTCGTTATCCTACAATAAC 59.401 40.741 0.00 0.00 38.29 1.89
48 49 7.047460 TCTCCTTCGTTATCCTACAATAACC 57.953 40.000 0.00 0.00 38.38 2.85
49 50 6.041296 TCTCCTTCGTTATCCTACAATAACCC 59.959 42.308 0.00 0.00 38.38 4.11
50 51 5.901276 TCCTTCGTTATCCTACAATAACCCT 59.099 40.000 0.00 0.00 38.38 4.34
51 52 6.384886 TCCTTCGTTATCCTACAATAACCCTT 59.615 38.462 0.00 0.00 38.38 3.95
52 53 6.704937 CCTTCGTTATCCTACAATAACCCTTC 59.295 42.308 0.00 0.00 38.38 3.46
53 54 6.795144 TCGTTATCCTACAATAACCCTTCA 57.205 37.500 0.00 0.00 38.38 3.02
54 55 7.185318 TCGTTATCCTACAATAACCCTTCAA 57.815 36.000 0.00 0.00 38.38 2.69
55 56 7.043565 TCGTTATCCTACAATAACCCTTCAAC 58.956 38.462 0.00 0.00 38.38 3.18
56 57 6.259387 CGTTATCCTACAATAACCCTTCAACC 59.741 42.308 0.00 0.00 38.38 3.77
57 58 5.789574 ATCCTACAATAACCCTTCAACCA 57.210 39.130 0.00 0.00 0.00 3.67
58 59 4.913784 TCCTACAATAACCCTTCAACCAC 58.086 43.478 0.00 0.00 0.00 4.16
59 60 4.600111 TCCTACAATAACCCTTCAACCACT 59.400 41.667 0.00 0.00 0.00 4.00
60 61 4.941873 CCTACAATAACCCTTCAACCACTC 59.058 45.833 0.00 0.00 0.00 3.51
61 62 3.763057 ACAATAACCCTTCAACCACTCC 58.237 45.455 0.00 0.00 0.00 3.85
62 63 3.139397 ACAATAACCCTTCAACCACTCCA 59.861 43.478 0.00 0.00 0.00 3.86
63 64 4.148838 CAATAACCCTTCAACCACTCCAA 58.851 43.478 0.00 0.00 0.00 3.53
64 65 2.838637 AACCCTTCAACCACTCCAAA 57.161 45.000 0.00 0.00 0.00 3.28
65 66 2.364972 ACCCTTCAACCACTCCAAAG 57.635 50.000 0.00 0.00 0.00 2.77
66 67 0.961753 CCCTTCAACCACTCCAAAGC 59.038 55.000 0.00 0.00 0.00 3.51
67 68 1.691196 CCTTCAACCACTCCAAAGCA 58.309 50.000 0.00 0.00 0.00 3.91
68 69 1.610522 CCTTCAACCACTCCAAAGCAG 59.389 52.381 0.00 0.00 0.00 4.24
69 70 1.000938 CTTCAACCACTCCAAAGCAGC 60.001 52.381 0.00 0.00 0.00 5.25
70 71 0.823356 TCAACCACTCCAAAGCAGCC 60.823 55.000 0.00 0.00 0.00 4.85
71 72 1.531602 AACCACTCCAAAGCAGCCC 60.532 57.895 0.00 0.00 0.00 5.19
72 73 2.677875 CCACTCCAAAGCAGCCCC 60.678 66.667 0.00 0.00 0.00 5.80
73 74 2.677875 CACTCCAAAGCAGCCCCC 60.678 66.667 0.00 0.00 0.00 5.40
74 75 4.351054 ACTCCAAAGCAGCCCCCG 62.351 66.667 0.00 0.00 0.00 5.73
75 76 4.033776 CTCCAAAGCAGCCCCCGA 62.034 66.667 0.00 0.00 0.00 5.14
76 77 3.338250 TCCAAAGCAGCCCCCGAT 61.338 61.111 0.00 0.00 0.00 4.18
77 78 2.830370 CCAAAGCAGCCCCCGATC 60.830 66.667 0.00 0.00 0.00 3.69
78 79 2.273449 CAAAGCAGCCCCCGATCT 59.727 61.111 0.00 0.00 0.00 2.75
79 80 2.117156 CAAAGCAGCCCCCGATCTG 61.117 63.158 0.00 0.00 0.00 2.90
80 81 3.350031 AAAGCAGCCCCCGATCTGG 62.350 63.158 0.00 0.00 37.55 3.86
81 82 4.804420 AGCAGCCCCCGATCTGGA 62.804 66.667 4.46 0.00 42.00 3.86
82 83 4.554036 GCAGCCCCCGATCTGGAC 62.554 72.222 4.46 0.00 42.00 4.02
83 84 3.866582 CAGCCCCCGATCTGGACC 61.867 72.222 4.46 0.00 42.00 4.46
84 85 4.095400 AGCCCCCGATCTGGACCT 62.095 66.667 4.46 0.00 42.00 3.85
85 86 2.122989 GCCCCCGATCTGGACCTA 60.123 66.667 4.46 0.00 42.00 3.08
86 87 1.764854 GCCCCCGATCTGGACCTAA 60.765 63.158 4.46 0.00 42.00 2.69
87 88 2.041206 GCCCCCGATCTGGACCTAAC 62.041 65.000 4.46 0.00 42.00 2.34
88 89 1.408453 CCCCCGATCTGGACCTAACC 61.408 65.000 4.46 0.00 42.00 2.85
89 90 1.740285 CCCGATCTGGACCTAACCG 59.260 63.158 0.00 0.00 42.00 4.44
90 91 1.067582 CCGATCTGGACCTAACCGC 59.932 63.158 0.00 0.00 42.00 5.68
91 92 1.067582 CGATCTGGACCTAACCGCC 59.932 63.158 0.00 0.00 0.00 6.13
92 93 1.067582 GATCTGGACCTAACCGCCG 59.932 63.158 0.00 0.00 0.00 6.46
93 94 2.365095 GATCTGGACCTAACCGCCGG 62.365 65.000 0.00 0.00 0.00 6.13
94 95 2.866523 ATCTGGACCTAACCGCCGGA 62.867 60.000 11.71 0.00 41.06 5.14
95 96 3.072468 TGGACCTAACCGCCGGAG 61.072 66.667 11.71 0.00 0.00 4.63
96 97 4.525949 GGACCTAACCGCCGGAGC 62.526 72.222 11.71 0.00 0.00 4.70
97 98 4.525949 GACCTAACCGCCGGAGCC 62.526 72.222 11.71 0.00 34.57 4.70
99 100 2.836360 CCTAACCGCCGGAGCCTA 60.836 66.667 11.71 0.00 34.57 3.93
100 101 2.207924 CCTAACCGCCGGAGCCTAT 61.208 63.158 11.71 0.00 34.57 2.57
101 102 1.006102 CTAACCGCCGGAGCCTATG 60.006 63.158 11.71 0.00 34.57 2.23
102 103 1.745320 CTAACCGCCGGAGCCTATGT 61.745 60.000 11.71 0.00 34.57 2.29
103 104 2.023414 TAACCGCCGGAGCCTATGTG 62.023 60.000 11.71 0.00 34.57 3.21
109 110 4.530857 GGAGCCTATGTGCGCCGT 62.531 66.667 4.18 0.00 41.40 5.68
110 111 3.264897 GAGCCTATGTGCGCCGTG 61.265 66.667 4.18 0.00 36.02 4.94
111 112 3.716539 GAGCCTATGTGCGCCGTGA 62.717 63.158 4.18 0.00 36.02 4.35
112 113 2.588877 GCCTATGTGCGCCGTGAT 60.589 61.111 4.18 0.00 0.00 3.06
113 114 2.885676 GCCTATGTGCGCCGTGATG 61.886 63.158 4.18 0.00 0.00 3.07
114 115 2.246739 CCTATGTGCGCCGTGATGG 61.247 63.158 4.18 0.00 42.50 3.51
125 126 4.899239 GTGATGGCGGCGAGAGGG 62.899 72.222 12.98 0.00 0.00 4.30
128 129 4.853142 ATGGCGGCGAGAGGGGTA 62.853 66.667 12.98 0.00 0.00 3.69
131 132 4.208686 GCGGCGAGAGGGGTAGTG 62.209 72.222 12.98 0.00 0.00 2.74
132 133 3.528370 CGGCGAGAGGGGTAGTGG 61.528 72.222 0.00 0.00 0.00 4.00
133 134 2.043248 GGCGAGAGGGGTAGTGGA 60.043 66.667 0.00 0.00 0.00 4.02
134 135 1.684734 GGCGAGAGGGGTAGTGGAA 60.685 63.158 0.00 0.00 0.00 3.53
135 136 1.516423 GCGAGAGGGGTAGTGGAAC 59.484 63.158 0.00 0.00 0.00 3.62
136 137 1.807886 CGAGAGGGGTAGTGGAACG 59.192 63.158 0.00 0.00 45.86 3.95
137 138 1.664321 CGAGAGGGGTAGTGGAACGG 61.664 65.000 0.00 0.00 45.86 4.44
138 139 1.305887 AGAGGGGTAGTGGAACGGG 60.306 63.158 0.00 0.00 45.86 5.28
139 140 3.007323 AGGGGTAGTGGAACGGGC 61.007 66.667 0.00 0.00 45.86 6.13
140 141 4.462280 GGGGTAGTGGAACGGGCG 62.462 72.222 0.00 0.00 45.86 6.13
141 142 4.462280 GGGTAGTGGAACGGGCGG 62.462 72.222 0.00 0.00 45.86 6.13
160 161 4.593864 GGCTCCGTCGCCCATCTC 62.594 72.222 0.97 0.00 44.41 2.75
161 162 4.593864 GCTCCGTCGCCCATCTCC 62.594 72.222 0.00 0.00 0.00 3.71
162 163 3.917760 CTCCGTCGCCCATCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
163 164 4.770362 TCCGTCGCCCATCTCCCA 62.770 66.667 0.00 0.00 0.00 4.37
164 165 4.530857 CCGTCGCCCATCTCCCAC 62.531 72.222 0.00 0.00 0.00 4.61
165 166 4.873129 CGTCGCCCATCTCCCACG 62.873 72.222 0.00 0.00 0.00 4.94
190 191 5.008911 TGTGGTTTTCATTGATCTCACAGTG 59.991 40.000 0.00 0.00 31.46 3.66
191 192 5.009010 GTGGTTTTCATTGATCTCACAGTGT 59.991 40.000 0.00 0.00 0.00 3.55
192 193 5.239306 TGGTTTTCATTGATCTCACAGTGTC 59.761 40.000 0.00 0.00 0.00 3.67
209 218 6.258727 CACAGTGTCACTAGATCAAAACTTGT 59.741 38.462 4.85 0.00 0.00 3.16
213 222 4.757149 GTCACTAGATCAAAACTTGTGCCT 59.243 41.667 0.00 0.00 39.53 4.75
214 223 5.932303 GTCACTAGATCAAAACTTGTGCCTA 59.068 40.000 0.00 0.00 39.53 3.93
224 233 5.886960 AAACTTGTGCCTATCAATCAGTC 57.113 39.130 0.00 0.00 0.00 3.51
233 242 3.006217 CCTATCAATCAGTCATCGCTCCA 59.994 47.826 0.00 0.00 0.00 3.86
235 244 0.935898 CAATCAGTCATCGCTCCAGC 59.064 55.000 0.00 0.00 37.78 4.85
236 245 0.538584 AATCAGTCATCGCTCCAGCA 59.461 50.000 0.00 0.00 42.21 4.41
268 283 5.221891 TCGTGAAGCAAGCAGAAATTATC 57.778 39.130 0.00 0.00 0.00 1.75
270 285 4.346129 GTGAAGCAAGCAGAAATTATCCG 58.654 43.478 0.00 0.00 0.00 4.18
281 296 5.700832 GCAGAAATTATCCGGATGTGACATA 59.299 40.000 27.55 1.32 0.00 2.29
284 299 7.065085 CAGAAATTATCCGGATGTGACATATCC 59.935 40.741 27.55 18.74 40.57 2.59
304 321 8.989980 CATATCCGATATACTTGTAGCGATCTA 58.010 37.037 0.39 0.00 35.65 1.98
305 322 6.905544 TCCGATATACTTGTAGCGATCTAG 57.094 41.667 0.00 0.00 35.65 2.43
307 324 5.064834 CCGATATACTTGTAGCGATCTAGCA 59.935 44.000 0.00 0.00 35.65 3.49
326 343 1.871676 CAATCATGCTCATCTGTCCGG 59.128 52.381 0.00 0.00 0.00 5.14
327 344 0.395686 ATCATGCTCATCTGTCCGGG 59.604 55.000 0.00 0.00 0.00 5.73
328 345 1.227764 CATGCTCATCTGTCCGGGG 60.228 63.158 0.00 0.00 0.00 5.73
339 356 1.747745 GTCCGGGGCGCATTTACTT 60.748 57.895 10.83 0.00 0.00 2.24
345 362 1.476488 GGGGCGCATTTACTTGTGAAT 59.524 47.619 10.83 0.00 0.00 2.57
361 378 6.818644 ACTTGTGAATCACGCAGAAATATACT 59.181 34.615 16.43 0.00 40.21 2.12
362 379 7.979537 ACTTGTGAATCACGCAGAAATATACTA 59.020 33.333 16.43 0.00 40.21 1.82
365 382 7.979537 TGTGAATCACGCAGAAATATACTACTT 59.020 33.333 9.00 0.00 37.14 2.24
367 384 8.414003 TGAATCACGCAGAAATATACTACTTCT 58.586 33.333 0.00 0.00 0.00 2.85
384 401 5.287674 ACTTCTGATGTGATATGTGAGGG 57.712 43.478 0.00 0.00 0.00 4.30
398 415 1.046472 TGAGGGTCACGTCCACTTGT 61.046 55.000 0.00 0.00 0.00 3.16
406 423 1.027357 ACGTCCACTTGTAGTCGTGT 58.973 50.000 0.00 0.00 0.00 4.49
413 430 2.494471 CACTTGTAGTCGTGTATCCCCA 59.506 50.000 0.00 0.00 0.00 4.96
415 432 2.519771 TGTAGTCGTGTATCCCCACT 57.480 50.000 0.00 0.00 33.07 4.00
416 433 2.811410 TGTAGTCGTGTATCCCCACTT 58.189 47.619 0.00 0.00 33.07 3.16
420 437 4.198028 AGTCGTGTATCCCCACTTAAAC 57.802 45.455 0.00 0.00 33.07 2.01
421 438 3.055602 AGTCGTGTATCCCCACTTAAACC 60.056 47.826 0.00 0.00 33.07 3.27
422 439 2.905085 TCGTGTATCCCCACTTAAACCA 59.095 45.455 0.00 0.00 33.07 3.67
423 440 3.520317 TCGTGTATCCCCACTTAAACCAT 59.480 43.478 0.00 0.00 33.07 3.55
424 441 3.625764 CGTGTATCCCCACTTAAACCATG 59.374 47.826 0.00 0.00 33.07 3.66
425 442 4.595986 GTGTATCCCCACTTAAACCATGT 58.404 43.478 0.00 0.00 32.50 3.21
426 443 5.014202 GTGTATCCCCACTTAAACCATGTT 58.986 41.667 0.00 0.00 32.50 2.71
428 445 3.603965 TCCCCACTTAAACCATGTTGT 57.396 42.857 0.00 0.00 0.00 3.32
429 446 3.226777 TCCCCACTTAAACCATGTTGTG 58.773 45.455 0.00 0.00 0.00 3.33
430 447 2.288763 CCCCACTTAAACCATGTTGTGC 60.289 50.000 0.00 0.00 0.00 4.57
431 448 2.288763 CCCACTTAAACCATGTTGTGCC 60.289 50.000 0.00 0.00 0.00 5.01
432 449 2.288763 CCACTTAAACCATGTTGTGCCC 60.289 50.000 0.00 0.00 0.00 5.36
434 451 3.006752 CACTTAAACCATGTTGTGCCCAT 59.993 43.478 0.00 0.00 0.00 4.00
436 453 1.422531 AAACCATGTTGTGCCCATGT 58.577 45.000 0.00 0.00 38.39 3.21
437 454 0.968405 AACCATGTTGTGCCCATGTC 59.032 50.000 0.00 0.00 38.39 3.06
438 455 1.243342 ACCATGTTGTGCCCATGTCG 61.243 55.000 0.00 0.00 38.39 4.35
440 457 2.342650 ATGTTGTGCCCATGTCGCC 61.343 57.895 0.00 0.00 0.00 5.54
441 458 4.101790 GTTGTGCCCATGTCGCCG 62.102 66.667 0.00 0.00 0.00 6.46
474 491 3.136123 CTGATGTGCCAAGCCCCG 61.136 66.667 0.00 0.00 0.00 5.73
501 518 3.551659 CCAGAGAAGCTTTGCCTTGTTTC 60.552 47.826 0.00 0.00 0.00 2.78
539 567 3.625764 TGCTGTTGGTAGTGAGAAACAAC 59.374 43.478 0.00 0.00 41.18 3.32
550 579 2.084546 GAGAAACAACTGATTCCCCGG 58.915 52.381 0.00 0.00 0.00 5.73
702 741 2.127609 GTCGCGCTTCACACAAGC 60.128 61.111 5.56 0.00 39.77 4.01
703 742 2.280119 TCGCGCTTCACACAAGCT 60.280 55.556 5.56 0.00 40.94 3.74
704 743 1.006688 TCGCGCTTCACACAAGCTA 60.007 52.632 5.56 0.00 40.94 3.32
705 744 1.008875 TCGCGCTTCACACAAGCTAG 61.009 55.000 5.56 0.00 40.94 3.42
706 745 1.133458 GCGCTTCACACAAGCTAGC 59.867 57.895 6.62 6.62 40.94 3.42
707 746 1.790387 CGCTTCACACAAGCTAGCC 59.210 57.895 12.13 0.00 40.94 3.93
708 747 1.639298 CGCTTCACACAAGCTAGCCC 61.639 60.000 12.13 0.00 40.94 5.19
808 870 3.617288 GCTGCGAAATTTCCCTCCAAAAT 60.617 43.478 12.54 0.00 0.00 1.82
817 879 7.475137 AATTTCCCTCCAAAATATTCAACGA 57.525 32.000 0.00 0.00 0.00 3.85
826 899 5.286638 CAAAATATTCAACGACAAAACGCG 58.713 37.500 3.53 3.53 36.70 6.01
827 900 4.392619 AATATTCAACGACAAAACGCGA 57.607 36.364 15.93 0.00 36.70 5.87
828 901 2.013286 ATTCAACGACAAAACGCGAC 57.987 45.000 15.93 0.00 36.70 5.19
829 902 0.314418 TTCAACGACAAAACGCGACG 60.314 50.000 15.93 10.76 36.70 5.12
830 903 2.053725 AACGACAAAACGCGACGC 60.054 55.556 15.93 10.49 36.70 5.19
841 914 2.202703 GCGACGCGACCACCTTAT 60.203 61.111 15.93 0.00 0.00 1.73
842 915 2.514013 GCGACGCGACCACCTTATG 61.514 63.158 15.93 0.00 0.00 1.90
890 963 2.169769 CCGCCTATAAAACTCCACCTCA 59.830 50.000 0.00 0.00 0.00 3.86
975 1077 4.849329 CACCGGCCGTAGAGCGTC 62.849 72.222 26.12 0.00 39.32 5.19
987 1092 3.547613 CGTAGAGCGTCTAACATACACCC 60.548 52.174 0.00 0.00 29.58 4.61
1080 1190 0.245813 GTAAGGTGGTGGACGAGGTC 59.754 60.000 0.00 0.00 0.00 3.85
1113 1223 2.261671 GTGATGGACGACGGCAGT 59.738 61.111 1.63 0.00 0.00 4.40
1179 1289 3.849951 CCGGTGCAGCCCTACGAT 61.850 66.667 10.90 0.00 0.00 3.73
1482 1598 4.521075 CGGTCAATCGCCATGTCT 57.479 55.556 0.00 0.00 0.00 3.41
1554 1670 0.840722 ACATGTCCCGGGTCTTCCTT 60.841 55.000 22.86 0.00 0.00 3.36
1581 1697 2.606519 AGCTCCGGTGGCAACCTA 60.607 61.111 20.23 0.00 45.17 3.08
1797 1913 2.589157 CGCTACCAAGGACCACCCA 61.589 63.158 0.00 0.00 37.41 4.51
1998 2114 1.157870 ACCTCAACAAGTTCGCCGTG 61.158 55.000 0.00 0.00 0.00 4.94
2082 2198 1.001378 GCCCGCCACTAATAAAGCATG 60.001 52.381 0.00 0.00 0.00 4.06
2113 2490 3.657448 TATCCCACACGTGCCGCAG 62.657 63.158 17.22 0.00 0.00 5.18
2134 2514 5.670097 CAGTGCTTATATGTGTTATGCGTC 58.330 41.667 0.00 0.00 0.00 5.19
2135 2515 4.750098 AGTGCTTATATGTGTTATGCGTCC 59.250 41.667 0.00 0.00 0.00 4.79
2240 2632 0.750850 GTATCCTGTCGCCTTGCCTA 59.249 55.000 0.00 0.00 0.00 3.93
2241 2633 0.750850 TATCCTGTCGCCTTGCCTAC 59.249 55.000 0.00 0.00 0.00 3.18
2242 2634 0.978146 ATCCTGTCGCCTTGCCTACT 60.978 55.000 0.00 0.00 0.00 2.57
2245 2637 1.066430 CCTGTCGCCTTGCCTACTTAA 60.066 52.381 0.00 0.00 0.00 1.85
2246 2638 2.420129 CCTGTCGCCTTGCCTACTTAAT 60.420 50.000 0.00 0.00 0.00 1.40
2247 2639 2.866762 CTGTCGCCTTGCCTACTTAATC 59.133 50.000 0.00 0.00 0.00 1.75
2249 2641 2.866762 GTCGCCTTGCCTACTTAATCAG 59.133 50.000 0.00 0.00 0.00 2.90
2252 2704 3.181475 CGCCTTGCCTACTTAATCAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
2255 2707 5.069251 GCCTTGCCTACTTAATCAGAGAGTA 59.931 44.000 0.00 0.00 0.00 2.59
2275 2727 4.811557 AGTAGAACTGTTTCAAGTCACTGC 59.188 41.667 0.00 0.00 33.72 4.40
2298 2785 2.088950 AAACCCGTCGTAGTTCATGG 57.911 50.000 0.00 0.00 0.00 3.66
2299 2786 0.248289 AACCCGTCGTAGTTCATGGG 59.752 55.000 0.00 0.00 42.50 4.00
2300 2787 0.612732 ACCCGTCGTAGTTCATGGGA 60.613 55.000 1.41 0.00 39.03 4.37
2301 2788 0.533491 CCCGTCGTAGTTCATGGGAA 59.467 55.000 0.00 0.00 39.03 3.97
2302 2789 1.138266 CCCGTCGTAGTTCATGGGAAT 59.862 52.381 0.00 0.00 39.03 3.01
2303 2790 2.363038 CCCGTCGTAGTTCATGGGAATA 59.637 50.000 0.00 0.00 39.03 1.75
2305 2792 4.502604 CCCGTCGTAGTTCATGGGAATAAT 60.503 45.833 0.00 0.00 39.03 1.28
2306 2793 5.279106 CCCGTCGTAGTTCATGGGAATAATA 60.279 44.000 0.00 0.00 39.03 0.98
2307 2794 6.395629 CCGTCGTAGTTCATGGGAATAATAT 58.604 40.000 0.00 0.00 35.05 1.28
2308 2795 6.310467 CCGTCGTAGTTCATGGGAATAATATG 59.690 42.308 0.00 0.00 35.05 1.78
2309 2796 7.088272 CGTCGTAGTTCATGGGAATAATATGA 58.912 38.462 0.00 0.00 35.05 2.15
2310 2797 7.273598 CGTCGTAGTTCATGGGAATAATATGAG 59.726 40.741 0.00 0.00 35.05 2.90
2311 2798 7.545965 GTCGTAGTTCATGGGAATAATATGAGG 59.454 40.741 0.00 0.00 35.05 3.86
2312 2799 7.234782 TCGTAGTTCATGGGAATAATATGAGGT 59.765 37.037 0.00 0.00 35.05 3.85
2313 2800 8.528643 CGTAGTTCATGGGAATAATATGAGGTA 58.471 37.037 0.00 0.00 35.05 3.08
2316 2803 8.260818 AGTTCATGGGAATAATATGAGGTATCG 58.739 37.037 0.00 0.00 35.05 2.92
2317 2804 7.971368 TCATGGGAATAATATGAGGTATCGA 57.029 36.000 0.00 0.00 0.00 3.59
2318 2805 8.553085 TCATGGGAATAATATGAGGTATCGAT 57.447 34.615 2.16 2.16 0.00 3.59
2319 2806 8.992349 TCATGGGAATAATATGAGGTATCGATT 58.008 33.333 1.71 0.00 0.00 3.34
2320 2807 9.049523 CATGGGAATAATATGAGGTATCGATTG 57.950 37.037 1.71 0.00 0.00 2.67
2321 2808 8.146053 TGGGAATAATATGAGGTATCGATTGT 57.854 34.615 1.71 0.00 0.00 2.71
2322 2809 8.602424 TGGGAATAATATGAGGTATCGATTGTT 58.398 33.333 1.71 0.00 0.00 2.83
2329 2816 8.709386 ATATGAGGTATCGATTGTTATTCAGC 57.291 34.615 1.71 0.00 0.00 4.26
2422 2909 4.795970 ACAAACAGTTTGCTAAGTCTCG 57.204 40.909 23.53 0.00 44.39 4.04
2423 2910 3.560068 ACAAACAGTTTGCTAAGTCTCGG 59.440 43.478 23.53 0.00 44.39 4.63
2424 2911 3.470645 AACAGTTTGCTAAGTCTCGGT 57.529 42.857 0.00 0.00 0.00 4.69
2425 2912 3.027974 ACAGTTTGCTAAGTCTCGGTC 57.972 47.619 0.00 0.00 0.00 4.79
2426 2913 1.986378 CAGTTTGCTAAGTCTCGGTCG 59.014 52.381 0.00 0.00 0.00 4.79
2427 2914 1.884579 AGTTTGCTAAGTCTCGGTCGA 59.115 47.619 0.00 0.00 0.00 4.20
2428 2915 1.984297 GTTTGCTAAGTCTCGGTCGAC 59.016 52.381 7.13 7.13 0.00 4.20
2429 2916 1.531423 TTGCTAAGTCTCGGTCGACT 58.469 50.000 16.46 0.00 45.73 4.18
2430 2917 0.803117 TGCTAAGTCTCGGTCGACTG 59.197 55.000 18.66 18.66 43.14 3.51
2431 2918 1.085091 GCTAAGTCTCGGTCGACTGA 58.915 55.000 25.02 25.02 43.14 3.41
2438 2925 2.160063 TCGGTCGACTGAGACTTCG 58.840 57.895 23.11 11.34 40.76 3.79
2439 2926 1.512310 CGGTCGACTGAGACTTCGC 60.512 63.158 20.01 0.00 40.76 4.70
2440 2927 1.877367 GGTCGACTGAGACTTCGCT 59.123 57.895 16.46 0.00 40.76 4.93
2441 2928 1.085091 GGTCGACTGAGACTTCGCTA 58.915 55.000 16.46 0.00 40.76 4.26
2442 2929 1.671845 GGTCGACTGAGACTTCGCTAT 59.328 52.381 16.46 0.00 40.76 2.97
2443 2930 2.539953 GGTCGACTGAGACTTCGCTATG 60.540 54.545 16.46 0.00 40.76 2.23
2444 2931 2.096174 GTCGACTGAGACTTCGCTATGT 59.904 50.000 8.70 0.00 38.09 2.29
2445 2932 2.352034 TCGACTGAGACTTCGCTATGTC 59.648 50.000 0.00 0.00 35.15 3.06
2446 2933 2.353269 CGACTGAGACTTCGCTATGTCT 59.647 50.000 6.50 6.50 45.06 3.41
2452 2939 2.353269 AGACTTCGCTATGTCTCAGTCG 59.647 50.000 1.38 0.00 39.04 4.18
2453 2940 1.402259 ACTTCGCTATGTCTCAGTCGG 59.598 52.381 0.00 0.00 0.00 4.79
2454 2941 1.402259 CTTCGCTATGTCTCAGTCGGT 59.598 52.381 0.00 0.00 0.00 4.69
2455 2942 2.320745 TCGCTATGTCTCAGTCGGTA 57.679 50.000 0.00 0.00 0.00 4.02
2456 2943 2.210961 TCGCTATGTCTCAGTCGGTAG 58.789 52.381 0.00 0.00 0.00 3.18
2457 2944 1.941294 CGCTATGTCTCAGTCGGTAGT 59.059 52.381 0.00 0.00 0.00 2.73
2458 2945 3.129109 CGCTATGTCTCAGTCGGTAGTA 58.871 50.000 0.00 0.00 0.00 1.82
2459 2946 3.747010 CGCTATGTCTCAGTCGGTAGTAT 59.253 47.826 0.00 0.00 0.00 2.12
2460 2947 4.143073 CGCTATGTCTCAGTCGGTAGTATC 60.143 50.000 0.00 0.00 0.00 2.24
2461 2948 4.998672 GCTATGTCTCAGTCGGTAGTATCT 59.001 45.833 0.00 0.00 0.00 1.98
2462 2949 5.470777 GCTATGTCTCAGTCGGTAGTATCTT 59.529 44.000 0.00 0.00 0.00 2.40
2463 2950 6.347888 GCTATGTCTCAGTCGGTAGTATCTTC 60.348 46.154 0.00 0.00 0.00 2.87
2464 2951 4.197750 TGTCTCAGTCGGTAGTATCTTCC 58.802 47.826 0.00 0.00 0.00 3.46
2465 2952 4.080469 TGTCTCAGTCGGTAGTATCTTCCT 60.080 45.833 0.00 0.00 0.00 3.36
2466 2953 4.883006 GTCTCAGTCGGTAGTATCTTCCTT 59.117 45.833 0.00 0.00 0.00 3.36
2467 2954 5.357596 GTCTCAGTCGGTAGTATCTTCCTTT 59.642 44.000 0.00 0.00 0.00 3.11
2468 2955 5.357314 TCTCAGTCGGTAGTATCTTCCTTTG 59.643 44.000 0.00 0.00 0.00 2.77
2469 2956 5.258841 TCAGTCGGTAGTATCTTCCTTTGA 58.741 41.667 0.00 0.00 0.00 2.69
2470 2957 5.892119 TCAGTCGGTAGTATCTTCCTTTGAT 59.108 40.000 0.00 0.00 0.00 2.57
2471 2958 6.380274 TCAGTCGGTAGTATCTTCCTTTGATT 59.620 38.462 0.00 0.00 0.00 2.57
2472 2959 7.042335 CAGTCGGTAGTATCTTCCTTTGATTT 58.958 38.462 0.00 0.00 0.00 2.17
2473 2960 7.222999 CAGTCGGTAGTATCTTCCTTTGATTTC 59.777 40.741 0.00 0.00 0.00 2.17
2474 2961 6.198591 GTCGGTAGTATCTTCCTTTGATTTCG 59.801 42.308 0.00 0.00 0.00 3.46
2475 2962 6.040878 CGGTAGTATCTTCCTTTGATTTCGT 58.959 40.000 0.00 0.00 0.00 3.85
2476 2963 7.067372 TCGGTAGTATCTTCCTTTGATTTCGTA 59.933 37.037 0.00 0.00 0.00 3.43
2477 2964 7.866393 CGGTAGTATCTTCCTTTGATTTCGTAT 59.134 37.037 0.00 0.00 0.00 3.06
2485 2972 9.751542 TCTTCCTTTGATTTCGTATAGAGATTC 57.248 33.333 0.00 0.00 0.00 2.52
2486 2973 9.534565 CTTCCTTTGATTTCGTATAGAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
2488 2975 9.481340 TCCTTTGATTTCGTATAGAGATTCATG 57.519 33.333 0.00 0.00 0.00 3.07
2489 2976 8.226448 CCTTTGATTTCGTATAGAGATTCATGC 58.774 37.037 0.00 0.00 0.00 4.06
2490 2977 8.661352 TTTGATTTCGTATAGAGATTCATGCA 57.339 30.769 0.00 0.00 0.00 3.96
2491 2978 8.661352 TTGATTTCGTATAGAGATTCATGCAA 57.339 30.769 0.00 0.00 0.00 4.08
2492 2979 8.661352 TGATTTCGTATAGAGATTCATGCAAA 57.339 30.769 0.00 0.00 0.00 3.68
2493 2980 9.108284 TGATTTCGTATAGAGATTCATGCAAAA 57.892 29.630 0.00 0.00 0.00 2.44
2494 2981 9.935682 GATTTCGTATAGAGATTCATGCAAAAA 57.064 29.630 0.00 0.00 0.00 1.94
2550 3037 8.596781 ACTATATCACTTGACTTAGACTTGGT 57.403 34.615 4.92 0.00 0.00 3.67
2551 3038 9.036980 ACTATATCACTTGACTTAGACTTGGTT 57.963 33.333 4.92 0.00 0.00 3.67
2552 3039 9.522804 CTATATCACTTGACTTAGACTTGGTTC 57.477 37.037 0.00 0.00 0.00 3.62
2553 3040 4.617959 TCACTTGACTTAGACTTGGTTCG 58.382 43.478 0.00 0.00 0.00 3.95
2554 3041 4.340097 TCACTTGACTTAGACTTGGTTCGA 59.660 41.667 0.00 0.00 0.00 3.71
2555 3042 4.681942 CACTTGACTTAGACTTGGTTCGAG 59.318 45.833 0.00 0.00 0.00 4.04
2556 3043 4.341520 ACTTGACTTAGACTTGGTTCGAGT 59.658 41.667 0.00 0.00 0.00 4.18
2557 3044 5.533903 ACTTGACTTAGACTTGGTTCGAGTA 59.466 40.000 0.00 0.00 0.00 2.59
2558 3045 6.040166 ACTTGACTTAGACTTGGTTCGAGTAA 59.960 38.462 0.00 0.00 0.00 2.24
2559 3046 6.010294 TGACTTAGACTTGGTTCGAGTAAG 57.990 41.667 4.48 4.48 0.00 2.34
2560 3047 5.766670 TGACTTAGACTTGGTTCGAGTAAGA 59.233 40.000 10.96 0.00 0.00 2.10
2561 3048 6.011476 ACTTAGACTTGGTTCGAGTAAGAC 57.989 41.667 10.96 6.21 0.00 3.01
2562 3049 3.938289 AGACTTGGTTCGAGTAAGACC 57.062 47.619 10.96 4.62 0.00 3.85
2563 3050 3.498334 AGACTTGGTTCGAGTAAGACCT 58.502 45.455 10.96 6.08 0.00 3.85
2564 3051 4.660168 AGACTTGGTTCGAGTAAGACCTA 58.340 43.478 10.96 0.86 0.00 3.08
2565 3052 4.701171 AGACTTGGTTCGAGTAAGACCTAG 59.299 45.833 11.56 11.56 0.00 3.02
2566 3053 3.193056 ACTTGGTTCGAGTAAGACCTAGC 59.807 47.826 12.66 0.00 0.00 3.42
2567 3054 2.097825 TGGTTCGAGTAAGACCTAGCC 58.902 52.381 4.92 0.00 0.00 3.93
2599 3086 2.301870 TGATCTGACGGCTTAAACAGGT 59.698 45.455 0.00 0.00 0.00 4.00
2622 3109 9.710818 AGGTCAGTTAGATCTATTAGTTTACCA 57.289 33.333 2.58 0.00 35.40 3.25
2662 3153 2.894126 ACGTTAATGAAAATGCCCCACA 59.106 40.909 0.58 0.00 0.00 4.17
2943 3434 1.596934 TGAGGGCATCAGGACGTTC 59.403 57.895 0.00 0.00 32.77 3.95
3014 3505 0.107993 CAGGCGATCATGTCCACTGT 60.108 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.512516 GATGGGTGCTTGAGCGGC 61.513 66.667 0.00 0.00 45.83 6.53
9 10 1.817099 GAGATGGGTGCTTGAGCGG 60.817 63.158 0.00 0.00 45.83 5.52
10 11 1.817099 GGAGATGGGTGCTTGAGCG 60.817 63.158 0.00 0.00 45.83 5.03
11 12 0.034670 AAGGAGATGGGTGCTTGAGC 60.035 55.000 0.00 0.00 42.50 4.26
12 13 1.741732 CGAAGGAGATGGGTGCTTGAG 60.742 57.143 0.00 0.00 0.00 3.02
13 14 0.250234 CGAAGGAGATGGGTGCTTGA 59.750 55.000 0.00 0.00 0.00 3.02
14 15 0.036010 ACGAAGGAGATGGGTGCTTG 60.036 55.000 0.00 0.00 0.00 4.01
15 16 0.693049 AACGAAGGAGATGGGTGCTT 59.307 50.000 0.00 0.00 0.00 3.91
16 17 1.568504 TAACGAAGGAGATGGGTGCT 58.431 50.000 0.00 0.00 0.00 4.40
17 18 2.484889 GATAACGAAGGAGATGGGTGC 58.515 52.381 0.00 0.00 0.00 5.01
18 19 2.700897 AGGATAACGAAGGAGATGGGTG 59.299 50.000 0.00 0.00 0.00 4.61
19 20 3.047695 AGGATAACGAAGGAGATGGGT 57.952 47.619 0.00 0.00 0.00 4.51
20 21 3.895656 TGTAGGATAACGAAGGAGATGGG 59.104 47.826 0.00 0.00 0.00 4.00
21 22 5.531122 TTGTAGGATAACGAAGGAGATGG 57.469 43.478 0.00 0.00 0.00 3.51
22 23 7.599245 GGTTATTGTAGGATAACGAAGGAGATG 59.401 40.741 0.00 0.00 41.33 2.90
23 24 7.256225 GGGTTATTGTAGGATAACGAAGGAGAT 60.256 40.741 0.00 0.00 41.33 2.75
24 25 6.041296 GGGTTATTGTAGGATAACGAAGGAGA 59.959 42.308 0.00 0.00 41.33 3.71
25 26 6.041751 AGGGTTATTGTAGGATAACGAAGGAG 59.958 42.308 0.00 0.00 41.33 3.69
26 27 5.901276 AGGGTTATTGTAGGATAACGAAGGA 59.099 40.000 0.00 0.00 41.33 3.36
27 28 6.170846 AGGGTTATTGTAGGATAACGAAGG 57.829 41.667 0.00 0.00 41.33 3.46
28 29 7.270047 TGAAGGGTTATTGTAGGATAACGAAG 58.730 38.462 0.00 0.00 41.33 3.79
29 30 7.185318 TGAAGGGTTATTGTAGGATAACGAA 57.815 36.000 0.00 0.00 41.33 3.85
30 31 6.795144 TGAAGGGTTATTGTAGGATAACGA 57.205 37.500 0.00 0.00 41.33 3.85
31 32 6.259387 GGTTGAAGGGTTATTGTAGGATAACG 59.741 42.308 0.00 0.00 41.33 3.18
32 33 7.066645 GTGGTTGAAGGGTTATTGTAGGATAAC 59.933 40.741 0.00 0.00 40.26 1.89
33 34 7.037153 AGTGGTTGAAGGGTTATTGTAGGATAA 60.037 37.037 0.00 0.00 0.00 1.75
34 35 6.445786 AGTGGTTGAAGGGTTATTGTAGGATA 59.554 38.462 0.00 0.00 0.00 2.59
35 36 5.253096 AGTGGTTGAAGGGTTATTGTAGGAT 59.747 40.000 0.00 0.00 0.00 3.24
36 37 4.600111 AGTGGTTGAAGGGTTATTGTAGGA 59.400 41.667 0.00 0.00 0.00 2.94
37 38 4.918588 AGTGGTTGAAGGGTTATTGTAGG 58.081 43.478 0.00 0.00 0.00 3.18
38 39 4.941873 GGAGTGGTTGAAGGGTTATTGTAG 59.058 45.833 0.00 0.00 0.00 2.74
39 40 4.351407 TGGAGTGGTTGAAGGGTTATTGTA 59.649 41.667 0.00 0.00 0.00 2.41
40 41 3.139397 TGGAGTGGTTGAAGGGTTATTGT 59.861 43.478 0.00 0.00 0.00 2.71
41 42 3.761897 TGGAGTGGTTGAAGGGTTATTG 58.238 45.455 0.00 0.00 0.00 1.90
42 43 4.463050 TTGGAGTGGTTGAAGGGTTATT 57.537 40.909 0.00 0.00 0.00 1.40
43 44 4.407365 CTTTGGAGTGGTTGAAGGGTTAT 58.593 43.478 0.00 0.00 0.00 1.89
44 45 3.827722 CTTTGGAGTGGTTGAAGGGTTA 58.172 45.455 0.00 0.00 0.00 2.85
45 46 2.666317 CTTTGGAGTGGTTGAAGGGTT 58.334 47.619 0.00 0.00 0.00 4.11
46 47 1.754201 GCTTTGGAGTGGTTGAAGGGT 60.754 52.381 0.00 0.00 0.00 4.34
47 48 0.961753 GCTTTGGAGTGGTTGAAGGG 59.038 55.000 0.00 0.00 0.00 3.95
48 49 1.610522 CTGCTTTGGAGTGGTTGAAGG 59.389 52.381 0.00 0.00 0.00 3.46
49 50 1.000938 GCTGCTTTGGAGTGGTTGAAG 60.001 52.381 0.00 0.00 0.00 3.02
50 51 1.032014 GCTGCTTTGGAGTGGTTGAA 58.968 50.000 0.00 0.00 0.00 2.69
51 52 0.823356 GGCTGCTTTGGAGTGGTTGA 60.823 55.000 0.00 0.00 0.00 3.18
52 53 1.662044 GGCTGCTTTGGAGTGGTTG 59.338 57.895 0.00 0.00 0.00 3.77
53 54 1.531602 GGGCTGCTTTGGAGTGGTT 60.532 57.895 0.00 0.00 0.00 3.67
54 55 2.116125 GGGCTGCTTTGGAGTGGT 59.884 61.111 0.00 0.00 0.00 4.16
55 56 2.677875 GGGGCTGCTTTGGAGTGG 60.678 66.667 0.00 0.00 0.00 4.00
56 57 2.677875 GGGGGCTGCTTTGGAGTG 60.678 66.667 0.00 0.00 0.00 3.51
57 58 4.351054 CGGGGGCTGCTTTGGAGT 62.351 66.667 0.00 0.00 0.00 3.85
58 59 3.350031 ATCGGGGGCTGCTTTGGAG 62.350 63.158 0.00 0.00 0.00 3.86
59 60 3.338250 ATCGGGGGCTGCTTTGGA 61.338 61.111 0.00 0.00 0.00 3.53
60 61 2.830370 GATCGGGGGCTGCTTTGG 60.830 66.667 0.00 0.00 0.00 3.28
61 62 2.117156 CAGATCGGGGGCTGCTTTG 61.117 63.158 0.00 0.00 0.00 2.77
62 63 2.273449 CAGATCGGGGGCTGCTTT 59.727 61.111 0.00 0.00 0.00 3.51
63 64 3.801997 CCAGATCGGGGGCTGCTT 61.802 66.667 3.59 0.00 0.00 3.91
64 65 4.804420 TCCAGATCGGGGGCTGCT 62.804 66.667 12.28 0.00 34.36 4.24
65 66 4.554036 GTCCAGATCGGGGGCTGC 62.554 72.222 12.28 0.00 34.36 5.25
66 67 2.946988 TAGGTCCAGATCGGGGGCTG 62.947 65.000 12.28 0.00 34.36 4.85
67 68 2.252012 TTAGGTCCAGATCGGGGGCT 62.252 60.000 12.28 1.08 34.36 5.19
68 69 1.764854 TTAGGTCCAGATCGGGGGC 60.765 63.158 12.28 7.28 34.36 5.80
69 70 1.408453 GGTTAGGTCCAGATCGGGGG 61.408 65.000 12.28 3.44 34.36 5.40
70 71 1.745320 CGGTTAGGTCCAGATCGGGG 61.745 65.000 12.28 6.09 34.36 5.73
71 72 1.740285 CGGTTAGGTCCAGATCGGG 59.260 63.158 5.39 5.39 34.36 5.14
72 73 1.067582 GCGGTTAGGTCCAGATCGG 59.932 63.158 0.00 0.00 0.00 4.18
73 74 1.067582 GGCGGTTAGGTCCAGATCG 59.932 63.158 0.00 0.00 0.00 3.69
74 75 1.067582 CGGCGGTTAGGTCCAGATC 59.932 63.158 0.00 0.00 0.00 2.75
75 76 2.432300 CCGGCGGTTAGGTCCAGAT 61.432 63.158 19.97 0.00 0.00 2.90
76 77 3.072468 CCGGCGGTTAGGTCCAGA 61.072 66.667 19.97 0.00 0.00 3.86
77 78 3.072468 TCCGGCGGTTAGGTCCAG 61.072 66.667 27.32 0.00 0.00 3.86
78 79 3.072468 CTCCGGCGGTTAGGTCCA 61.072 66.667 27.32 2.13 0.00 4.02
79 80 4.525949 GCTCCGGCGGTTAGGTCC 62.526 72.222 27.32 0.25 0.00 4.46
80 81 4.525949 GGCTCCGGCGGTTAGGTC 62.526 72.222 27.32 12.38 39.81 3.85
81 82 2.941563 ATAGGCTCCGGCGGTTAGGT 62.942 60.000 27.32 10.60 39.81 3.08
82 83 2.207924 ATAGGCTCCGGCGGTTAGG 61.208 63.158 27.32 15.15 39.81 2.69
83 84 1.006102 CATAGGCTCCGGCGGTTAG 60.006 63.158 27.32 18.16 39.81 2.34
84 85 1.759299 ACATAGGCTCCGGCGGTTA 60.759 57.895 27.32 14.34 39.81 2.85
85 86 3.081409 ACATAGGCTCCGGCGGTT 61.081 61.111 27.32 12.57 39.81 4.44
86 87 3.849951 CACATAGGCTCCGGCGGT 61.850 66.667 27.32 9.18 39.81 5.68
92 93 4.530857 ACGGCGCACATAGGCTCC 62.531 66.667 10.83 0.00 35.32 4.70
93 94 2.978452 ATCACGGCGCACATAGGCTC 62.978 60.000 10.83 0.00 0.00 4.70
94 95 3.094062 ATCACGGCGCACATAGGCT 62.094 57.895 10.83 0.00 0.00 4.58
95 96 2.588877 ATCACGGCGCACATAGGC 60.589 61.111 10.83 0.00 0.00 3.93
96 97 2.246739 CCATCACGGCGCACATAGG 61.247 63.158 10.83 0.00 0.00 2.57
97 98 3.323000 CCATCACGGCGCACATAG 58.677 61.111 10.83 0.00 0.00 2.23
108 109 4.899239 CCCTCTCGCCGCCATCAC 62.899 72.222 0.00 0.00 0.00 3.06
111 112 4.853142 TACCCCTCTCGCCGCCAT 62.853 66.667 0.00 0.00 0.00 4.40
114 115 4.208686 CACTACCCCTCTCGCCGC 62.209 72.222 0.00 0.00 0.00 6.53
115 116 3.528370 CCACTACCCCTCTCGCCG 61.528 72.222 0.00 0.00 0.00 6.46
116 117 1.684734 TTCCACTACCCCTCTCGCC 60.685 63.158 0.00 0.00 0.00 5.54
117 118 1.516423 GTTCCACTACCCCTCTCGC 59.484 63.158 0.00 0.00 0.00 5.03
118 119 1.664321 CCGTTCCACTACCCCTCTCG 61.664 65.000 0.00 0.00 0.00 4.04
119 120 1.328430 CCCGTTCCACTACCCCTCTC 61.328 65.000 0.00 0.00 0.00 3.20
120 121 1.305887 CCCGTTCCACTACCCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
121 122 3.027675 GCCCGTTCCACTACCCCTC 62.028 68.421 0.00 0.00 0.00 4.30
122 123 3.007323 GCCCGTTCCACTACCCCT 61.007 66.667 0.00 0.00 0.00 4.79
123 124 4.462280 CGCCCGTTCCACTACCCC 62.462 72.222 0.00 0.00 0.00 4.95
124 125 4.462280 CCGCCCGTTCCACTACCC 62.462 72.222 0.00 0.00 0.00 3.69
144 145 4.593864 GGAGATGGGCGACGGAGC 62.594 72.222 0.00 0.00 0.00 4.70
145 146 3.917760 GGGAGATGGGCGACGGAG 61.918 72.222 0.00 0.00 0.00 4.63
146 147 4.770362 TGGGAGATGGGCGACGGA 62.770 66.667 0.00 0.00 0.00 4.69
147 148 4.530857 GTGGGAGATGGGCGACGG 62.531 72.222 0.00 0.00 0.00 4.79
148 149 4.873129 CGTGGGAGATGGGCGACG 62.873 72.222 0.00 0.00 0.00 5.12
149 150 3.771160 ACGTGGGAGATGGGCGAC 61.771 66.667 0.00 0.00 0.00 5.19
150 151 3.770040 CACGTGGGAGATGGGCGA 61.770 66.667 7.95 0.00 0.00 5.54
151 152 4.082523 ACACGTGGGAGATGGGCG 62.083 66.667 21.57 0.00 0.00 6.13
152 153 2.436646 CACACGTGGGAGATGGGC 60.437 66.667 21.57 0.00 0.00 5.36
153 154 2.268920 CCACACGTGGGAGATGGG 59.731 66.667 22.05 4.95 46.81 4.00
162 163 4.024133 TGAGATCAATGAAAACCACACGTG 60.024 41.667 15.48 15.48 0.00 4.49
163 164 4.024048 GTGAGATCAATGAAAACCACACGT 60.024 41.667 0.00 0.00 0.00 4.49
164 165 4.024133 TGTGAGATCAATGAAAACCACACG 60.024 41.667 0.00 0.00 0.00 4.49
165 166 5.009010 ACTGTGAGATCAATGAAAACCACAC 59.991 40.000 0.00 0.00 31.17 3.82
177 178 5.711976 TGATCTAGTGACACTGTGAGATCAA 59.288 40.000 30.25 20.44 41.33 2.57
190 191 4.757149 AGGCACAAGTTTTGATCTAGTGAC 59.243 41.667 0.00 0.00 33.86 3.67
191 192 4.973168 AGGCACAAGTTTTGATCTAGTGA 58.027 39.130 0.00 0.00 0.00 3.41
192 193 6.595326 TGATAGGCACAAGTTTTGATCTAGTG 59.405 38.462 0.00 0.00 0.00 2.74
209 218 2.366590 AGCGATGACTGATTGATAGGCA 59.633 45.455 0.00 0.00 37.63 4.75
213 222 3.553715 GCTGGAGCGATGACTGATTGATA 60.554 47.826 0.00 0.00 0.00 2.15
214 223 2.806019 GCTGGAGCGATGACTGATTGAT 60.806 50.000 0.00 0.00 0.00 2.57
236 245 0.665068 TGCTTCACGATTACACGCGT 60.665 50.000 5.58 5.58 42.11 6.01
242 251 4.404507 TTTCTGCTTGCTTCACGATTAC 57.595 40.909 0.00 0.00 0.00 1.89
270 285 7.548097 ACAAGTATATCGGATATGTCACATCC 58.452 38.462 18.52 0.00 38.92 3.51
281 296 6.017770 GCTAGATCGCTACAAGTATATCGGAT 60.018 42.308 0.00 0.00 0.00 4.18
284 299 6.108097 TGCTAGATCGCTACAAGTATATCG 57.892 41.667 0.00 0.00 0.00 2.92
285 300 8.184848 TGATTGCTAGATCGCTACAAGTATATC 58.815 37.037 0.00 0.00 0.00 1.63
307 324 1.202734 CCCGGACAGATGAGCATGATT 60.203 52.381 0.73 0.00 0.00 2.57
320 337 2.437002 GTAAATGCGCCCCGGACA 60.437 61.111 0.73 0.00 0.00 4.02
321 338 1.747745 AAGTAAATGCGCCCCGGAC 60.748 57.895 0.73 0.00 0.00 4.79
322 339 1.747367 CAAGTAAATGCGCCCCGGA 60.747 57.895 0.73 0.00 0.00 5.14
323 340 2.043980 ACAAGTAAATGCGCCCCGG 61.044 57.895 4.18 0.00 0.00 5.73
324 341 1.136565 CACAAGTAAATGCGCCCCG 59.863 57.895 4.18 0.00 0.00 5.73
325 342 0.885196 TTCACAAGTAAATGCGCCCC 59.115 50.000 4.18 0.00 0.00 5.80
326 343 2.163412 TGATTCACAAGTAAATGCGCCC 59.837 45.455 4.18 0.00 0.00 6.13
327 344 3.171277 GTGATTCACAAGTAAATGCGCC 58.829 45.455 11.93 0.00 34.08 6.53
328 345 2.840176 CGTGATTCACAAGTAAATGCGC 59.160 45.455 16.61 0.00 33.40 6.09
339 356 7.489160 AGTAGTATATTTCTGCGTGATTCACA 58.511 34.615 16.61 0.00 33.40 3.58
361 378 5.899547 ACCCTCACATATCACATCAGAAGTA 59.100 40.000 0.00 0.00 0.00 2.24
362 379 4.718774 ACCCTCACATATCACATCAGAAGT 59.281 41.667 0.00 0.00 0.00 3.01
365 382 4.100035 GTGACCCTCACATATCACATCAGA 59.900 45.833 0.00 0.00 46.22 3.27
367 384 4.406648 GTGACCCTCACATATCACATCA 57.593 45.455 0.00 0.00 46.22 3.07
384 401 1.002033 ACGACTACAAGTGGACGTGAC 60.002 52.381 12.27 0.00 40.17 3.67
392 409 3.160777 GGGGATACACGACTACAAGTG 57.839 52.381 0.00 0.00 43.46 3.16
406 423 5.013547 CACAACATGGTTTAAGTGGGGATA 58.986 41.667 0.00 0.00 0.00 2.59
413 430 2.672098 TGGGCACAACATGGTTTAAGT 58.328 42.857 0.00 0.00 0.00 2.24
415 432 3.674528 CATGGGCACAACATGGTTTAA 57.325 42.857 0.00 0.00 41.46 1.52
422 439 2.342650 GGCGACATGGGCACAACAT 61.343 57.895 12.28 0.00 0.00 2.71
423 440 2.983030 GGCGACATGGGCACAACA 60.983 61.111 12.28 0.00 0.00 3.33
424 441 4.101790 CGGCGACATGGGCACAAC 62.102 66.667 0.00 0.00 0.00 3.32
425 442 4.634703 ACGGCGACATGGGCACAA 62.635 61.111 16.62 0.00 0.00 3.33
455 472 2.757099 GGGCTTGGCACATCAGGG 60.757 66.667 0.00 0.00 39.30 4.45
474 491 1.311651 GCAAAGCTTCTCTGGCCTCC 61.312 60.000 3.32 0.00 0.00 4.30
501 518 6.037391 ACCAACAGCAAAAGTGAAATGAAATG 59.963 34.615 0.00 0.00 0.00 2.32
539 567 2.190578 GTCAGGCCGGGGAATCAG 59.809 66.667 2.18 0.00 0.00 2.90
550 579 1.188219 TGGGTCAGTCTCAGTCAGGC 61.188 60.000 0.00 0.00 0.00 4.85
571 602 2.079158 CCGTGGACTCGACTACTACAA 58.921 52.381 0.00 0.00 0.00 2.41
604 635 4.640647 GTCTGAAAAGTCTTTGAACTGGGT 59.359 41.667 0.00 0.00 0.00 4.51
702 741 2.045926 GTGTGTGGGCTGGGCTAG 60.046 66.667 0.00 0.00 0.00 3.42
703 742 3.646715 GGTGTGTGGGCTGGGCTA 61.647 66.667 0.00 0.00 0.00 3.93
706 745 3.632080 TACGGTGTGTGGGCTGGG 61.632 66.667 0.00 0.00 0.00 4.45
707 746 2.358247 GTACGGTGTGTGGGCTGG 60.358 66.667 0.00 0.00 0.00 4.85
708 747 2.358247 GGTACGGTGTGTGGGCTG 60.358 66.667 0.00 0.00 0.00 4.85
808 870 2.408738 CGTCGCGTTTTGTCGTTGAATA 60.409 45.455 5.77 0.00 0.00 1.75
826 899 1.488527 GATCATAAGGTGGTCGCGTC 58.511 55.000 5.77 0.00 0.00 5.19
827 900 3.661745 GATCATAAGGTGGTCGCGT 57.338 52.632 5.77 0.00 0.00 6.01
831 904 1.270358 GGGAGCGATCATAAGGTGGTC 60.270 57.143 1.84 0.00 34.46 4.02
832 905 0.759346 GGGAGCGATCATAAGGTGGT 59.241 55.000 1.84 0.00 0.00 4.16
833 906 0.035458 GGGGAGCGATCATAAGGTGG 59.965 60.000 1.84 0.00 0.00 4.61
834 907 1.051812 AGGGGAGCGATCATAAGGTG 58.948 55.000 1.84 0.00 0.00 4.00
835 908 1.051812 CAGGGGAGCGATCATAAGGT 58.948 55.000 1.84 0.00 0.00 3.50
836 909 0.321122 GCAGGGGAGCGATCATAAGG 60.321 60.000 1.84 0.00 0.00 2.69
841 914 3.157252 GGAGCAGGGGAGCGATCA 61.157 66.667 1.84 0.00 40.15 2.92
842 915 4.292178 CGGAGCAGGGGAGCGATC 62.292 72.222 0.00 0.00 40.15 3.69
975 1077 1.801395 CGTCGCTGGGGTGTATGTTAG 60.801 57.143 0.00 0.00 0.00 2.34
1113 1223 2.486504 GTCCACGTGCGGTCGATA 59.513 61.111 10.91 0.00 34.70 2.92
1482 1598 3.053896 TCGAGAGCGCCTTCGTCA 61.054 61.111 24.45 9.11 38.14 4.35
1695 1811 1.826054 CGTCTCCTCCAGCTCGGAT 60.826 63.158 5.50 0.00 45.19 4.18
1698 1814 4.200283 GGCGTCTCCTCCAGCTCG 62.200 72.222 0.00 0.00 0.00 5.03
1797 1913 2.504032 CCCATCGGGCACGTGTAT 59.496 61.111 18.38 3.31 41.85 2.29
1865 1981 2.362120 GGTCCTTCTCCCCGACGA 60.362 66.667 0.00 0.00 0.00 4.20
1885 2001 2.737376 GAGGTTGGTGTCGCGGAC 60.737 66.667 6.13 3.05 0.00 4.79
1998 2114 2.355115 GTGGTGGGGTCCATGTCC 59.645 66.667 0.00 0.00 39.81 4.02
2028 2144 2.959071 GCGTCGATGAGCTCCTGC 60.959 66.667 12.15 2.28 40.05 4.85
2082 2198 4.034048 CGTGTGGGATACTGTATGCTTTTC 59.966 45.833 17.14 3.44 0.00 2.29
2113 2490 4.750098 AGGACGCATAACACATATAAGCAC 59.250 41.667 0.00 0.00 0.00 4.40
2134 2514 3.764434 ACACACCTGATACTCACAGTAGG 59.236 47.826 0.00 0.00 33.66 3.18
2135 2515 4.702612 AGACACACCTGATACTCACAGTAG 59.297 45.833 0.00 0.00 33.66 2.57
2240 2632 8.861086 TGAAACAGTTCTACTCTCTGATTAAGT 58.139 33.333 0.00 0.00 34.60 2.24
2241 2633 9.698309 TTGAAACAGTTCTACTCTCTGATTAAG 57.302 33.333 0.00 0.00 34.60 1.85
2242 2634 9.698309 CTTGAAACAGTTCTACTCTCTGATTAA 57.302 33.333 0.00 0.00 34.60 1.40
2245 2637 7.014711 TGACTTGAAACAGTTCTACTCTCTGAT 59.985 37.037 0.00 0.00 34.60 2.90
2246 2638 6.321435 TGACTTGAAACAGTTCTACTCTCTGA 59.679 38.462 0.00 0.00 34.60 3.27
2247 2639 6.419413 GTGACTTGAAACAGTTCTACTCTCTG 59.581 42.308 0.00 0.00 34.60 3.35
2249 2641 6.419413 CAGTGACTTGAAACAGTTCTACTCTC 59.581 42.308 0.00 0.00 34.60 3.20
2252 2704 4.811557 GCAGTGACTTGAAACAGTTCTACT 59.188 41.667 0.00 0.00 34.60 2.57
2255 2707 3.609853 TGCAGTGACTTGAAACAGTTCT 58.390 40.909 0.00 0.00 34.60 3.01
2282 2769 0.533491 TTCCCATGAACTACGACGGG 59.467 55.000 0.00 0.00 34.81 5.28
2285 2772 7.545965 CCTCATATTATTCCCATGAACTACGAC 59.454 40.741 0.00 0.00 32.13 4.34
2296 2783 8.146053 ACAATCGATACCTCATATTATTCCCA 57.854 34.615 0.00 0.00 0.00 4.37
2303 2790 9.155975 GCTGAATAACAATCGATACCTCATATT 57.844 33.333 0.00 0.00 0.00 1.28
2305 2792 7.097192 GGCTGAATAACAATCGATACCTCATA 58.903 38.462 0.00 0.00 0.00 2.15
2306 2793 5.934625 GGCTGAATAACAATCGATACCTCAT 59.065 40.000 0.00 0.00 0.00 2.90
2307 2794 5.163353 TGGCTGAATAACAATCGATACCTCA 60.163 40.000 0.00 0.00 0.00 3.86
2308 2795 5.297547 TGGCTGAATAACAATCGATACCTC 58.702 41.667 0.00 0.00 0.00 3.85
2309 2796 5.290493 TGGCTGAATAACAATCGATACCT 57.710 39.130 0.00 0.00 0.00 3.08
2310 2797 6.183360 CGTATGGCTGAATAACAATCGATACC 60.183 42.308 0.00 0.00 0.00 2.73
2311 2798 6.584942 TCGTATGGCTGAATAACAATCGATAC 59.415 38.462 0.00 0.00 0.00 2.24
2312 2799 6.683715 TCGTATGGCTGAATAACAATCGATA 58.316 36.000 0.00 0.00 0.00 2.92
2313 2800 5.538118 TCGTATGGCTGAATAACAATCGAT 58.462 37.500 0.00 0.00 0.00 3.59
2314 2801 4.939271 TCGTATGGCTGAATAACAATCGA 58.061 39.130 0.00 0.00 0.00 3.59
2315 2802 5.177511 ACATCGTATGGCTGAATAACAATCG 59.822 40.000 0.00 0.00 33.60 3.34
2316 2803 6.365839 CACATCGTATGGCTGAATAACAATC 58.634 40.000 0.00 0.00 33.60 2.67
2317 2804 5.277974 GCACATCGTATGGCTGAATAACAAT 60.278 40.000 0.00 0.00 33.60 2.71
2318 2805 4.035091 GCACATCGTATGGCTGAATAACAA 59.965 41.667 0.00 0.00 33.60 2.83
2319 2806 3.559655 GCACATCGTATGGCTGAATAACA 59.440 43.478 0.00 0.00 33.60 2.41
2320 2807 3.559655 TGCACATCGTATGGCTGAATAAC 59.440 43.478 0.00 0.00 33.60 1.89
2321 2808 3.802866 TGCACATCGTATGGCTGAATAA 58.197 40.909 0.00 0.00 33.60 1.40
2322 2809 3.467374 TGCACATCGTATGGCTGAATA 57.533 42.857 0.00 0.00 33.60 1.75
2323 2810 2.330440 TGCACATCGTATGGCTGAAT 57.670 45.000 0.00 0.00 33.60 2.57
2324 2811 2.009051 CTTGCACATCGTATGGCTGAA 58.991 47.619 0.00 0.00 33.60 3.02
2325 2812 1.655484 CTTGCACATCGTATGGCTGA 58.345 50.000 0.00 0.00 33.60 4.26
2326 2813 0.659427 CCTTGCACATCGTATGGCTG 59.341 55.000 0.00 0.00 33.60 4.85
2327 2814 0.253044 ACCTTGCACATCGTATGGCT 59.747 50.000 0.00 0.00 33.60 4.75
2328 2815 1.948104 TACCTTGCACATCGTATGGC 58.052 50.000 0.00 0.00 33.60 4.40
2329 2816 3.466836 ACATACCTTGCACATCGTATGG 58.533 45.455 18.52 7.48 41.44 2.74
2390 2877 9.915629 TTAGCAAACTGTTTGTTTTTCTTAGAA 57.084 25.926 28.14 12.45 45.69 2.10
2396 2883 7.253321 CGAGACTTAGCAAACTGTTTGTTTTTC 60.253 37.037 28.14 19.59 45.69 2.29
2407 2894 1.884579 TCGACCGAGACTTAGCAAACT 59.115 47.619 0.00 0.00 0.00 2.66
2408 2895 1.984297 GTCGACCGAGACTTAGCAAAC 59.016 52.381 3.51 0.00 38.09 2.93
2409 2896 2.342910 GTCGACCGAGACTTAGCAAA 57.657 50.000 3.51 0.00 38.09 3.68
2418 2905 1.440708 GAAGTCTCAGTCGACCGAGA 58.559 55.000 24.28 24.28 35.93 4.04
2419 2906 0.095589 CGAAGTCTCAGTCGACCGAG 59.904 60.000 20.59 20.59 39.64 4.63
2420 2907 1.909141 GCGAAGTCTCAGTCGACCGA 61.909 60.000 13.01 6.63 39.64 4.69
2421 2908 1.512310 GCGAAGTCTCAGTCGACCG 60.512 63.158 13.01 1.05 39.64 4.79
2422 2909 1.085091 TAGCGAAGTCTCAGTCGACC 58.915 55.000 13.01 0.00 39.64 4.79
2423 2910 2.096174 ACATAGCGAAGTCTCAGTCGAC 59.904 50.000 7.70 7.70 39.64 4.20
2424 2911 2.352034 GACATAGCGAAGTCTCAGTCGA 59.648 50.000 0.00 0.00 39.64 4.20
2425 2912 2.353269 AGACATAGCGAAGTCTCAGTCG 59.647 50.000 0.00 0.00 40.96 4.18
2432 2919 2.539953 CCGACTGAGACATAGCGAAGTC 60.540 54.545 0.00 0.00 35.02 3.01
2433 2920 1.402259 CCGACTGAGACATAGCGAAGT 59.598 52.381 0.00 0.00 0.00 3.01
2434 2921 1.402259 ACCGACTGAGACATAGCGAAG 59.598 52.381 0.00 0.00 0.00 3.79
2435 2922 1.460504 ACCGACTGAGACATAGCGAA 58.539 50.000 0.00 0.00 0.00 4.70
2436 2923 2.210961 CTACCGACTGAGACATAGCGA 58.789 52.381 0.00 0.00 0.00 4.93
2437 2924 1.941294 ACTACCGACTGAGACATAGCG 59.059 52.381 0.00 0.00 0.00 4.26
2438 2925 4.998672 AGATACTACCGACTGAGACATAGC 59.001 45.833 0.00 0.00 0.00 2.97
2439 2926 6.148150 GGAAGATACTACCGACTGAGACATAG 59.852 46.154 0.00 0.00 0.00 2.23
2440 2927 5.996513 GGAAGATACTACCGACTGAGACATA 59.003 44.000 0.00 0.00 0.00 2.29
2441 2928 4.822896 GGAAGATACTACCGACTGAGACAT 59.177 45.833 0.00 0.00 0.00 3.06
2442 2929 4.080469 AGGAAGATACTACCGACTGAGACA 60.080 45.833 0.00 0.00 0.00 3.41
2443 2930 4.453751 AGGAAGATACTACCGACTGAGAC 58.546 47.826 0.00 0.00 0.00 3.36
2444 2931 4.774660 AGGAAGATACTACCGACTGAGA 57.225 45.455 0.00 0.00 0.00 3.27
2445 2932 5.357314 TCAAAGGAAGATACTACCGACTGAG 59.643 44.000 0.00 0.00 0.00 3.35
2446 2933 5.258841 TCAAAGGAAGATACTACCGACTGA 58.741 41.667 0.00 0.00 0.00 3.41
2447 2934 5.578005 TCAAAGGAAGATACTACCGACTG 57.422 43.478 0.00 0.00 0.00 3.51
2448 2935 6.793505 AATCAAAGGAAGATACTACCGACT 57.206 37.500 0.00 0.00 0.00 4.18
2449 2936 6.198591 CGAAATCAAAGGAAGATACTACCGAC 59.801 42.308 0.00 0.00 0.00 4.79
2450 2937 6.127535 ACGAAATCAAAGGAAGATACTACCGA 60.128 38.462 0.00 0.00 0.00 4.69
2451 2938 6.040878 ACGAAATCAAAGGAAGATACTACCG 58.959 40.000 0.00 0.00 0.00 4.02
2459 2946 9.751542 GAATCTCTATACGAAATCAAAGGAAGA 57.248 33.333 0.00 0.00 0.00 2.87
2460 2947 9.534565 TGAATCTCTATACGAAATCAAAGGAAG 57.465 33.333 0.00 0.00 0.00 3.46
2462 2949 9.481340 CATGAATCTCTATACGAAATCAAAGGA 57.519 33.333 0.00 0.00 0.00 3.36
2463 2950 8.226448 GCATGAATCTCTATACGAAATCAAAGG 58.774 37.037 0.00 0.00 0.00 3.11
2464 2951 8.768019 TGCATGAATCTCTATACGAAATCAAAG 58.232 33.333 0.00 0.00 0.00 2.77
2465 2952 8.661352 TGCATGAATCTCTATACGAAATCAAA 57.339 30.769 0.00 0.00 0.00 2.69
2466 2953 8.661352 TTGCATGAATCTCTATACGAAATCAA 57.339 30.769 0.00 0.00 0.00 2.57
2467 2954 8.661352 TTTGCATGAATCTCTATACGAAATCA 57.339 30.769 0.00 0.00 0.00 2.57
2468 2955 9.935682 TTTTTGCATGAATCTCTATACGAAATC 57.064 29.630 0.00 0.00 0.00 2.17
2524 3011 9.696572 ACCAAGTCTAAGTCAAGTGATATAGTA 57.303 33.333 0.00 0.00 0.00 1.82
2525 3012 8.596781 ACCAAGTCTAAGTCAAGTGATATAGT 57.403 34.615 0.00 0.00 0.00 2.12
2526 3013 9.522804 GAACCAAGTCTAAGTCAAGTGATATAG 57.477 37.037 0.00 0.00 0.00 1.31
2527 3014 8.188799 CGAACCAAGTCTAAGTCAAGTGATATA 58.811 37.037 0.00 0.00 0.00 0.86
2528 3015 7.036220 CGAACCAAGTCTAAGTCAAGTGATAT 58.964 38.462 0.00 0.00 0.00 1.63
2529 3016 6.208007 TCGAACCAAGTCTAAGTCAAGTGATA 59.792 38.462 0.00 0.00 0.00 2.15
2530 3017 5.010719 TCGAACCAAGTCTAAGTCAAGTGAT 59.989 40.000 0.00 0.00 0.00 3.06
2531 3018 4.340097 TCGAACCAAGTCTAAGTCAAGTGA 59.660 41.667 0.00 0.00 0.00 3.41
2532 3019 4.617959 TCGAACCAAGTCTAAGTCAAGTG 58.382 43.478 0.00 0.00 0.00 3.16
2533 3020 4.341520 ACTCGAACCAAGTCTAAGTCAAGT 59.658 41.667 0.00 0.00 0.00 3.16
2534 3021 4.872664 ACTCGAACCAAGTCTAAGTCAAG 58.127 43.478 0.00 0.00 0.00 3.02
2535 3022 4.931661 ACTCGAACCAAGTCTAAGTCAA 57.068 40.909 0.00 0.00 0.00 3.18
2536 3023 5.766670 TCTTACTCGAACCAAGTCTAAGTCA 59.233 40.000 0.00 0.00 0.00 3.41
2537 3024 6.085573 GTCTTACTCGAACCAAGTCTAAGTC 58.914 44.000 0.00 0.00 0.00 3.01
2538 3025 5.048154 GGTCTTACTCGAACCAAGTCTAAGT 60.048 44.000 0.00 0.00 0.00 2.24
2539 3026 5.183522 AGGTCTTACTCGAACCAAGTCTAAG 59.816 44.000 6.03 0.00 0.00 2.18
2540 3027 5.075493 AGGTCTTACTCGAACCAAGTCTAA 58.925 41.667 6.03 0.00 0.00 2.10
2541 3028 4.660168 AGGTCTTACTCGAACCAAGTCTA 58.340 43.478 6.03 0.00 0.00 2.59
2542 3029 3.498334 AGGTCTTACTCGAACCAAGTCT 58.502 45.455 6.03 1.34 0.00 3.24
2543 3030 3.938289 AGGTCTTACTCGAACCAAGTC 57.062 47.619 6.03 0.00 0.00 3.01
2544 3031 3.193056 GCTAGGTCTTACTCGAACCAAGT 59.807 47.826 6.03 0.00 0.00 3.16
2545 3032 3.429135 GGCTAGGTCTTACTCGAACCAAG 60.429 52.174 6.03 0.67 0.00 3.61
2546 3033 2.494870 GGCTAGGTCTTACTCGAACCAA 59.505 50.000 6.03 0.00 0.00 3.67
2547 3034 2.097825 GGCTAGGTCTTACTCGAACCA 58.902 52.381 6.03 0.00 0.00 3.67
2548 3035 2.097825 TGGCTAGGTCTTACTCGAACC 58.902 52.381 0.00 0.00 0.00 3.62
2549 3036 3.130693 ACATGGCTAGGTCTTACTCGAAC 59.869 47.826 0.00 0.00 0.00 3.95
2550 3037 3.362706 ACATGGCTAGGTCTTACTCGAA 58.637 45.455 0.00 0.00 0.00 3.71
2551 3038 3.014304 ACATGGCTAGGTCTTACTCGA 57.986 47.619 0.00 0.00 0.00 4.04
2552 3039 3.448686 CAACATGGCTAGGTCTTACTCG 58.551 50.000 0.00 0.00 0.00 4.18
2553 3040 3.197983 ACCAACATGGCTAGGTCTTACTC 59.802 47.826 0.00 0.00 42.67 2.59
2554 3041 3.182152 ACCAACATGGCTAGGTCTTACT 58.818 45.455 0.00 0.00 42.67 2.24
2555 3042 3.629142 ACCAACATGGCTAGGTCTTAC 57.371 47.619 0.00 0.00 42.67 2.34
2556 3043 4.650972 AAACCAACATGGCTAGGTCTTA 57.349 40.909 0.00 0.00 42.67 2.10
2557 3044 3.525800 AAACCAACATGGCTAGGTCTT 57.474 42.857 0.00 0.00 42.67 3.01
2558 3045 3.157087 CAAAACCAACATGGCTAGGTCT 58.843 45.455 0.00 0.00 42.67 3.85
2559 3046 3.153919 TCAAAACCAACATGGCTAGGTC 58.846 45.455 0.00 0.00 42.67 3.85
2560 3047 3.237268 TCAAAACCAACATGGCTAGGT 57.763 42.857 0.00 0.00 42.67 3.08
2561 3048 4.019174 AGATCAAAACCAACATGGCTAGG 58.981 43.478 0.00 0.00 42.67 3.02
2562 3049 4.701651 TCAGATCAAAACCAACATGGCTAG 59.298 41.667 0.00 0.00 42.67 3.42
2563 3050 4.458989 GTCAGATCAAAACCAACATGGCTA 59.541 41.667 0.00 0.00 42.67 3.93
2564 3051 3.256631 GTCAGATCAAAACCAACATGGCT 59.743 43.478 0.00 0.00 42.67 4.75
2565 3052 3.578688 GTCAGATCAAAACCAACATGGC 58.421 45.455 0.00 0.00 42.67 4.40
2566 3053 3.366273 CCGTCAGATCAAAACCAACATGG 60.366 47.826 0.00 0.00 45.02 3.66
2567 3054 3.825308 CCGTCAGATCAAAACCAACATG 58.175 45.455 0.00 0.00 0.00 3.21
2654 3145 2.743179 TACGTTGGTGTGTGGGGCA 61.743 57.895 0.00 0.00 0.00 5.36
2662 3153 0.461135 AACCTCACGTACGTTGGTGT 59.539 50.000 31.08 21.74 34.25 4.16
2798 3289 4.236935 GGAGTGAAACCGTACGTGAATTA 58.763 43.478 15.21 0.00 37.80 1.40
2861 3352 2.357034 GTCTTCCCGTCGCTGCAA 60.357 61.111 0.00 0.00 0.00 4.08
2943 3434 2.018515 GTCGAGGTAGAAGTCCTCCTG 58.981 57.143 6.42 0.00 46.09 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.