Multiple sequence alignment - TraesCS1B01G267300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G267300 chr1B 100.000 3490 0 0 1 3490 470309086 470305597 0.000000e+00 6445
1 TraesCS1B01G267300 chr1A 95.159 2768 85 23 749 3490 449189088 449191832 0.000000e+00 4324
2 TraesCS1B01G267300 chr1A 90.860 186 12 4 510 690 449180504 449180689 9.680000e-61 244
3 TraesCS1B01G267300 chr1A 77.157 394 71 14 1745 2136 500961376 500961752 9.810000e-51 211
4 TraesCS1B01G267300 chr1A 91.406 128 11 0 389 516 449175284 449175411 3.580000e-40 176
5 TraesCS1B01G267300 chr1A 93.671 79 3 2 672 748 449180698 449180776 2.200000e-22 117
6 TraesCS1B01G267300 chr1D 94.319 2869 75 34 674 3490 348672947 348670115 0.000000e+00 4314
7 TraesCS1B01G267300 chr1D 77.005 374 67 18 1765 2136 405402892 405403248 2.750000e-46 196
8 TraesCS1B01G267300 chr3A 80.151 398 54 19 1758 2139 576604626 576604238 1.230000e-69 274
9 TraesCS1B01G267300 chr3A 90.604 149 7 2 2 143 28129176 28129028 1.280000e-44 191
10 TraesCS1B01G267300 chr3B 79.389 393 64 15 1755 2139 573619880 573619497 9.610000e-66 261
11 TraesCS1B01G267300 chr3D 79.487 390 56 21 1755 2140 438265092 438264723 4.470000e-64 255
12 TraesCS1B01G267300 chr2A 94.366 142 6 2 1 141 41609744 41609884 2.110000e-52 217
13 TraesCS1B01G267300 chr6A 92.667 150 4 2 1 143 586033034 586032885 3.530000e-50 209
14 TraesCS1B01G267300 chr2B 97.521 121 3 0 18 138 578134215 578134095 1.270000e-49 207
15 TraesCS1B01G267300 chr2B 91.034 145 7 4 1 139 332905651 332905795 1.280000e-44 191
16 TraesCS1B01G267300 chr6B 91.781 146 6 1 1 140 634940788 634940933 7.640000e-47 198
17 TraesCS1B01G267300 chr6B 90.604 149 8 3 1 143 687873355 687873207 3.550000e-45 193
18 TraesCS1B01G267300 chr4A 91.275 149 7 2 1 143 689201240 689201388 7.640000e-47 198
19 TraesCS1B01G267300 chr5A 91.608 143 6 2 1 137 683607700 683607842 3.550000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G267300 chr1B 470305597 470309086 3489 True 6445 6445 100.000 1 3490 1 chr1B.!!$R1 3489
1 TraesCS1B01G267300 chr1A 449189088 449191832 2744 False 4324 4324 95.159 749 3490 1 chr1A.!!$F2 2741
2 TraesCS1B01G267300 chr1D 348670115 348672947 2832 True 4314 4314 94.319 674 3490 1 chr1D.!!$R1 2816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.030638 CACTGTTTGCCCAAGTTCGG 59.969 55.0 0.0 0.0 0.00 4.30 F
412 413 0.032515 TATCCTCTCCTTGTCGGGCA 60.033 55.0 0.0 0.0 0.00 5.36 F
426 427 0.179094 CGGGCAGACGGCTATTTGTA 60.179 55.0 0.0 0.0 44.01 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1748 1.068333 CCTGCATGCACCAAACACTAC 60.068 52.381 18.46 0.0 0.00 2.73 R
1934 1975 3.627577 GGTCAGTACCATGCCATGTTTAG 59.372 47.826 3.63 0.0 45.98 1.85 R
2493 2548 2.832838 TCCACCTATCTCTTGCTCCAA 58.167 47.619 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.918630 ATTTGGTCTCATTCAAAACAAGAATAG 57.081 29.630 0.00 0.00 36.60 1.73
30 31 8.690203 TTGGTCTCATTCAAAACAAGAATAGA 57.310 30.769 0.00 0.00 34.14 1.98
31 32 8.868522 TGGTCTCATTCAAAACAAGAATAGAT 57.131 30.769 0.00 0.00 34.14 1.98
32 33 9.958180 TGGTCTCATTCAAAACAAGAATAGATA 57.042 29.630 0.00 0.00 34.14 1.98
38 39 9.573133 CATTCAAAACAAGAATAGATACAACCC 57.427 33.333 0.00 0.00 34.14 4.11
39 40 8.698973 TTCAAAACAAGAATAGATACAACCCA 57.301 30.769 0.00 0.00 0.00 4.51
40 41 8.106247 TCAAAACAAGAATAGATACAACCCAC 57.894 34.615 0.00 0.00 0.00 4.61
41 42 7.721842 TCAAAACAAGAATAGATACAACCCACA 59.278 33.333 0.00 0.00 0.00 4.17
42 43 8.522830 CAAAACAAGAATAGATACAACCCACAT 58.477 33.333 0.00 0.00 0.00 3.21
43 44 7.865706 AACAAGAATAGATACAACCCACATC 57.134 36.000 0.00 0.00 0.00 3.06
44 45 6.957631 ACAAGAATAGATACAACCCACATCA 58.042 36.000 0.00 0.00 0.00 3.07
45 46 7.050377 ACAAGAATAGATACAACCCACATCAG 58.950 38.462 0.00 0.00 0.00 2.90
46 47 6.179906 AGAATAGATACAACCCACATCAGG 57.820 41.667 0.00 0.00 0.00 3.86
47 48 5.905331 AGAATAGATACAACCCACATCAGGA 59.095 40.000 0.00 0.00 0.00 3.86
48 49 3.914426 AGATACAACCCACATCAGGAC 57.086 47.619 0.00 0.00 0.00 3.85
49 50 3.181329 AGATACAACCCACATCAGGACA 58.819 45.455 0.00 0.00 0.00 4.02
50 51 2.851263 TACAACCCACATCAGGACAC 57.149 50.000 0.00 0.00 0.00 3.67
51 52 0.843309 ACAACCCACATCAGGACACA 59.157 50.000 0.00 0.00 0.00 3.72
52 53 1.238439 CAACCCACATCAGGACACAC 58.762 55.000 0.00 0.00 0.00 3.82
53 54 0.250295 AACCCACATCAGGACACACG 60.250 55.000 0.00 0.00 0.00 4.49
54 55 2.034879 CCCACATCAGGACACACGC 61.035 63.158 0.00 0.00 0.00 5.34
55 56 1.301637 CCACATCAGGACACACGCA 60.302 57.895 0.00 0.00 0.00 5.24
56 57 0.674581 CCACATCAGGACACACGCAT 60.675 55.000 0.00 0.00 0.00 4.73
57 58 0.723414 CACATCAGGACACACGCATC 59.277 55.000 0.00 0.00 0.00 3.91
58 59 0.610174 ACATCAGGACACACGCATCT 59.390 50.000 0.00 0.00 0.00 2.90
59 60 1.002430 ACATCAGGACACACGCATCTT 59.998 47.619 0.00 0.00 0.00 2.40
60 61 2.233676 ACATCAGGACACACGCATCTTA 59.766 45.455 0.00 0.00 0.00 2.10
61 62 3.118629 ACATCAGGACACACGCATCTTAT 60.119 43.478 0.00 0.00 0.00 1.73
62 63 4.099419 ACATCAGGACACACGCATCTTATA 59.901 41.667 0.00 0.00 0.00 0.98
63 64 4.307443 TCAGGACACACGCATCTTATAG 57.693 45.455 0.00 0.00 0.00 1.31
64 65 2.797156 CAGGACACACGCATCTTATAGC 59.203 50.000 0.00 0.00 0.00 2.97
65 66 2.430694 AGGACACACGCATCTTATAGCA 59.569 45.455 0.00 0.00 0.00 3.49
66 67 3.070159 AGGACACACGCATCTTATAGCAT 59.930 43.478 0.00 0.00 0.00 3.79
67 68 3.430218 GGACACACGCATCTTATAGCATC 59.570 47.826 0.00 0.00 0.00 3.91
68 69 4.051237 GACACACGCATCTTATAGCATCA 58.949 43.478 0.00 0.00 0.00 3.07
69 70 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
70 71 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
71 72 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
72 73 5.049886 CACACGCATCTTATAGCATCACATT 60.050 40.000 0.00 0.00 0.00 2.71
73 74 5.528690 ACACGCATCTTATAGCATCACATTT 59.471 36.000 0.00 0.00 0.00 2.32
74 75 6.705825 ACACGCATCTTATAGCATCACATTTA 59.294 34.615 0.00 0.00 0.00 1.40
75 76 7.226523 ACACGCATCTTATAGCATCACATTTAA 59.773 33.333 0.00 0.00 0.00 1.52
76 77 8.232513 CACGCATCTTATAGCATCACATTTAAT 58.767 33.333 0.00 0.00 0.00 1.40
77 78 8.232513 ACGCATCTTATAGCATCACATTTAATG 58.767 33.333 3.07 3.07 0.00 1.90
78 79 7.695201 CGCATCTTATAGCATCACATTTAATGG 59.305 37.037 9.88 0.00 33.60 3.16
79 80 7.487189 GCATCTTATAGCATCACATTTAATGGC 59.513 37.037 9.88 3.12 33.60 4.40
80 81 8.737175 CATCTTATAGCATCACATTTAATGGCT 58.263 33.333 9.88 10.13 33.60 4.75
81 82 9.964354 ATCTTATAGCATCACATTTAATGGCTA 57.036 29.630 9.88 11.83 33.60 3.93
82 83 9.964354 TCTTATAGCATCACATTTAATGGCTAT 57.036 29.630 21.11 21.11 32.32 2.97
139 140 8.988064 CTAGATGAGTTCTAGCAAAACTGTAA 57.012 34.615 0.32 0.00 45.63 2.41
140 141 9.593134 CTAGATGAGTTCTAGCAAAACTGTAAT 57.407 33.333 0.32 0.00 45.63 1.89
141 142 8.854614 AGATGAGTTCTAGCAAAACTGTAATT 57.145 30.769 0.32 0.00 37.10 1.40
142 143 9.289782 AGATGAGTTCTAGCAAAACTGTAATTT 57.710 29.630 0.32 0.00 37.10 1.82
143 144 9.334693 GATGAGTTCTAGCAAAACTGTAATTTG 57.665 33.333 0.32 1.52 37.10 2.32
144 145 8.220755 TGAGTTCTAGCAAAACTGTAATTTGT 57.779 30.769 0.32 0.00 39.42 2.83
145 146 9.332502 TGAGTTCTAGCAAAACTGTAATTTGTA 57.667 29.630 0.32 0.00 39.42 2.41
150 151 9.719355 TCTAGCAAAACTGTAATTTGTATGAGA 57.281 29.630 6.77 3.18 39.42 3.27
151 152 9.760660 CTAGCAAAACTGTAATTTGTATGAGAC 57.239 33.333 6.77 0.00 39.42 3.36
152 153 8.165239 AGCAAAACTGTAATTTGTATGAGACA 57.835 30.769 6.77 0.00 39.42 3.41
153 154 8.796475 AGCAAAACTGTAATTTGTATGAGACAT 58.204 29.630 6.77 0.00 39.42 3.06
157 158 8.997621 AACTGTAATTTGTATGAGACATACGT 57.002 30.769 14.36 0.00 38.07 3.57
158 159 8.630278 ACTGTAATTTGTATGAGACATACGTC 57.370 34.615 14.36 0.00 42.95 4.34
159 160 8.248253 ACTGTAATTTGTATGAGACATACGTCA 58.752 33.333 14.36 4.51 45.23 4.35
160 161 9.249457 CTGTAATTTGTATGAGACATACGTCAT 57.751 33.333 14.36 0.00 45.23 3.06
161 162 9.244799 TGTAATTTGTATGAGACATACGTCATC 57.755 33.333 14.36 0.00 45.23 2.92
162 163 9.464714 GTAATTTGTATGAGACATACGTCATCT 57.535 33.333 14.36 0.00 45.23 2.90
163 164 8.581057 AATTTGTATGAGACATACGTCATCTC 57.419 34.615 13.87 13.87 45.23 2.75
167 168 3.621558 TGAGACATACGTCATCTCAGGT 58.378 45.455 17.69 0.00 43.01 4.00
168 169 4.017126 TGAGACATACGTCATCTCAGGTT 58.983 43.478 17.69 0.00 43.01 3.50
169 170 5.190677 TGAGACATACGTCATCTCAGGTTA 58.809 41.667 17.69 1.17 43.01 2.85
170 171 5.066117 TGAGACATACGTCATCTCAGGTTAC 59.934 44.000 17.69 0.00 43.01 2.50
171 172 4.338682 AGACATACGTCATCTCAGGTTACC 59.661 45.833 0.00 0.00 45.23 2.85
172 173 4.021229 ACATACGTCATCTCAGGTTACCA 58.979 43.478 3.51 0.00 0.00 3.25
173 174 4.098044 ACATACGTCATCTCAGGTTACCAG 59.902 45.833 3.51 0.00 0.00 4.00
174 175 2.803956 ACGTCATCTCAGGTTACCAGA 58.196 47.619 3.51 0.00 0.00 3.86
175 176 2.492484 ACGTCATCTCAGGTTACCAGAC 59.508 50.000 3.51 1.14 0.00 3.51
176 177 2.478031 CGTCATCTCAGGTTACCAGACG 60.478 54.545 3.51 9.22 41.00 4.18
177 178 2.100197 TCATCTCAGGTTACCAGACGG 58.900 52.381 3.51 0.00 38.77 4.79
178 179 2.100197 CATCTCAGGTTACCAGACGGA 58.900 52.381 3.51 0.00 35.59 4.69
179 180 1.542492 TCTCAGGTTACCAGACGGAC 58.458 55.000 3.51 0.00 35.59 4.79
180 181 1.202964 TCTCAGGTTACCAGACGGACA 60.203 52.381 3.51 0.00 35.59 4.02
181 182 0.963962 TCAGGTTACCAGACGGACAC 59.036 55.000 3.51 0.00 35.59 3.67
182 183 0.677288 CAGGTTACCAGACGGACACA 59.323 55.000 3.51 0.00 35.59 3.72
183 184 0.966920 AGGTTACCAGACGGACACAG 59.033 55.000 3.51 0.00 35.59 3.66
184 185 0.037605 GGTTACCAGACGGACACAGG 60.038 60.000 0.00 0.00 35.59 4.00
185 186 0.037605 GTTACCAGACGGACACAGGG 60.038 60.000 0.00 0.00 35.59 4.45
186 187 1.823169 TTACCAGACGGACACAGGGC 61.823 60.000 0.00 0.00 35.59 5.19
187 188 3.625897 CCAGACGGACACAGGGCA 61.626 66.667 0.00 0.00 0.00 5.36
188 189 2.357517 CAGACGGACACAGGGCAC 60.358 66.667 0.00 0.00 0.00 5.01
189 190 2.524394 AGACGGACACAGGGCACT 60.524 61.111 0.00 0.00 0.00 4.40
203 204 3.272766 GCACTGTTTGCCCAAGTTC 57.727 52.632 0.00 0.00 46.63 3.01
204 205 0.594796 GCACTGTTTGCCCAAGTTCG 60.595 55.000 0.00 0.00 46.63 3.95
205 206 0.030638 CACTGTTTGCCCAAGTTCGG 59.969 55.000 0.00 0.00 0.00 4.30
206 207 0.106918 ACTGTTTGCCCAAGTTCGGA 60.107 50.000 0.00 0.00 0.00 4.55
207 208 0.310854 CTGTTTGCCCAAGTTCGGAC 59.689 55.000 0.00 0.00 0.00 4.79
208 209 1.104577 TGTTTGCCCAAGTTCGGACC 61.105 55.000 0.00 0.00 0.00 4.46
209 210 0.822121 GTTTGCCCAAGTTCGGACCT 60.822 55.000 0.00 0.00 0.00 3.85
210 211 0.536460 TTTGCCCAAGTTCGGACCTC 60.536 55.000 0.00 0.00 0.00 3.85
211 212 2.046217 GCCCAAGTTCGGACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
230 231 4.758251 CGATGCGGGTCACAGCCA 62.758 66.667 0.00 0.00 34.89 4.75
231 232 2.124570 GATGCGGGTCACAGCCAT 60.125 61.111 0.00 0.00 34.89 4.40
232 233 1.146041 GATGCGGGTCACAGCCATA 59.854 57.895 0.00 0.00 34.89 2.74
233 234 0.250467 GATGCGGGTCACAGCCATAT 60.250 55.000 0.00 0.00 34.89 1.78
234 235 0.183492 ATGCGGGTCACAGCCATATT 59.817 50.000 0.00 0.00 34.89 1.28
235 236 0.463654 TGCGGGTCACAGCCATATTC 60.464 55.000 0.00 0.00 34.89 1.75
236 237 1.166531 GCGGGTCACAGCCATATTCC 61.167 60.000 0.00 0.00 34.89 3.01
237 238 0.469917 CGGGTCACAGCCATATTCCT 59.530 55.000 0.00 0.00 34.89 3.36
238 239 1.811558 CGGGTCACAGCCATATTCCTG 60.812 57.143 0.00 0.00 34.89 3.86
239 240 1.312815 GGTCACAGCCATATTCCTGC 58.687 55.000 0.41 0.00 32.37 4.85
240 241 1.312815 GTCACAGCCATATTCCTGCC 58.687 55.000 0.41 0.00 32.37 4.85
241 242 1.133976 GTCACAGCCATATTCCTGCCT 60.134 52.381 0.41 0.00 32.37 4.75
242 243 1.565759 TCACAGCCATATTCCTGCCTT 59.434 47.619 0.41 0.00 32.37 4.35
243 244 1.679680 CACAGCCATATTCCTGCCTTG 59.320 52.381 0.41 0.00 32.37 3.61
244 245 0.672342 CAGCCATATTCCTGCCTTGC 59.328 55.000 0.00 0.00 0.00 4.01
245 246 0.259647 AGCCATATTCCTGCCTTGCA 59.740 50.000 0.00 0.00 36.92 4.08
246 247 1.133262 AGCCATATTCCTGCCTTGCAT 60.133 47.619 0.00 0.00 38.13 3.96
247 248 1.690352 GCCATATTCCTGCCTTGCATT 59.310 47.619 0.00 0.00 38.13 3.56
248 249 2.547218 GCCATATTCCTGCCTTGCATTG 60.547 50.000 0.00 0.00 38.13 2.82
249 250 2.036733 CCATATTCCTGCCTTGCATTGG 59.963 50.000 2.22 2.22 38.13 3.16
250 251 2.824689 TATTCCTGCCTTGCATTGGA 57.175 45.000 10.08 0.74 38.13 3.53
251 252 2.170012 ATTCCTGCCTTGCATTGGAT 57.830 45.000 10.08 0.00 38.13 3.41
252 253 1.941377 TTCCTGCCTTGCATTGGATT 58.059 45.000 10.08 0.00 38.13 3.01
253 254 2.824689 TCCTGCCTTGCATTGGATTA 57.175 45.000 10.08 0.00 38.13 1.75
254 255 3.317455 TCCTGCCTTGCATTGGATTAT 57.683 42.857 10.08 0.00 38.13 1.28
255 256 4.451891 TCCTGCCTTGCATTGGATTATA 57.548 40.909 10.08 0.00 38.13 0.98
256 257 5.001833 TCCTGCCTTGCATTGGATTATAT 57.998 39.130 10.08 0.00 38.13 0.86
257 258 5.396485 TCCTGCCTTGCATTGGATTATATT 58.604 37.500 10.08 0.00 38.13 1.28
258 259 6.551085 TCCTGCCTTGCATTGGATTATATTA 58.449 36.000 10.08 0.00 38.13 0.98
259 260 6.434028 TCCTGCCTTGCATTGGATTATATTAC 59.566 38.462 10.08 0.00 38.13 1.89
260 261 6.209192 CCTGCCTTGCATTGGATTATATTACA 59.791 38.462 10.08 0.00 38.13 2.41
261 262 7.255906 CCTGCCTTGCATTGGATTATATTACAA 60.256 37.037 10.08 0.00 38.13 2.41
262 263 8.016301 TGCCTTGCATTGGATTATATTACAAA 57.984 30.769 10.08 0.00 31.71 2.83
263 264 8.481314 TGCCTTGCATTGGATTATATTACAAAA 58.519 29.630 10.08 0.00 31.71 2.44
264 265 9.492973 GCCTTGCATTGGATTATATTACAAAAT 57.507 29.630 10.08 0.00 0.00 1.82
281 282 6.942532 ACAAAATGATATCAATAGTGGCGT 57.057 33.333 9.99 0.00 0.00 5.68
282 283 9.549078 TTACAAAATGATATCAATAGTGGCGTA 57.451 29.630 9.99 1.59 0.00 4.42
283 284 7.861630 ACAAAATGATATCAATAGTGGCGTAC 58.138 34.615 9.99 0.00 0.00 3.67
284 285 7.497579 ACAAAATGATATCAATAGTGGCGTACA 59.502 33.333 9.99 0.00 0.00 2.90
285 286 7.658179 AAATGATATCAATAGTGGCGTACAG 57.342 36.000 9.99 0.00 0.00 2.74
286 287 5.134202 TGATATCAATAGTGGCGTACAGG 57.866 43.478 1.98 0.00 0.00 4.00
287 288 4.587262 TGATATCAATAGTGGCGTACAGGT 59.413 41.667 1.98 0.00 0.00 4.00
288 289 3.906720 ATCAATAGTGGCGTACAGGTT 57.093 42.857 0.00 0.00 0.00 3.50
289 290 2.967362 TCAATAGTGGCGTACAGGTTG 58.033 47.619 0.00 0.00 0.00 3.77
290 291 2.300723 TCAATAGTGGCGTACAGGTTGT 59.699 45.455 0.00 0.00 0.00 3.32
291 292 3.071479 CAATAGTGGCGTACAGGTTGTT 58.929 45.455 0.00 0.00 0.00 2.83
292 293 2.914695 TAGTGGCGTACAGGTTGTTT 57.085 45.000 0.00 0.00 0.00 2.83
293 294 1.589803 AGTGGCGTACAGGTTGTTTC 58.410 50.000 0.00 0.00 0.00 2.78
294 295 1.140252 AGTGGCGTACAGGTTGTTTCT 59.860 47.619 0.00 0.00 0.00 2.52
295 296 1.263217 GTGGCGTACAGGTTGTTTCTG 59.737 52.381 0.00 0.00 38.16 3.02
296 297 1.134340 TGGCGTACAGGTTGTTTCTGT 60.134 47.619 0.00 0.00 46.02 3.41
297 298 1.529865 GGCGTACAGGTTGTTTCTGTC 59.470 52.381 0.00 0.00 43.55 3.51
298 299 1.191647 GCGTACAGGTTGTTTCTGTCG 59.808 52.381 0.00 6.02 43.55 4.35
299 300 2.734670 CGTACAGGTTGTTTCTGTCGA 58.265 47.619 0.00 0.00 43.55 4.20
300 301 2.724690 CGTACAGGTTGTTTCTGTCGAG 59.275 50.000 0.00 0.00 43.55 4.04
301 302 2.981859 ACAGGTTGTTTCTGTCGAGT 57.018 45.000 0.00 0.00 41.10 4.18
302 303 3.261981 ACAGGTTGTTTCTGTCGAGTT 57.738 42.857 0.00 0.00 41.10 3.01
303 304 2.936498 ACAGGTTGTTTCTGTCGAGTTG 59.064 45.455 0.00 0.00 41.10 3.16
304 305 2.287915 CAGGTTGTTTCTGTCGAGTTGG 59.712 50.000 0.00 0.00 0.00 3.77
305 306 1.602377 GGTTGTTTCTGTCGAGTTGGG 59.398 52.381 0.00 0.00 0.00 4.12
306 307 1.602377 GTTGTTTCTGTCGAGTTGGGG 59.398 52.381 0.00 0.00 0.00 4.96
307 308 0.534203 TGTTTCTGTCGAGTTGGGGC 60.534 55.000 0.00 0.00 0.00 5.80
308 309 1.301401 TTTCTGTCGAGTTGGGGCG 60.301 57.895 0.00 0.00 0.00 6.13
309 310 2.725203 TTTCTGTCGAGTTGGGGCGG 62.725 60.000 0.00 0.00 0.00 6.13
310 311 3.691342 CTGTCGAGTTGGGGCGGA 61.691 66.667 0.00 0.00 0.00 5.54
311 312 3.934391 CTGTCGAGTTGGGGCGGAC 62.934 68.421 0.00 0.00 0.00 4.79
312 313 3.998672 GTCGAGTTGGGGCGGACA 61.999 66.667 0.00 0.00 0.00 4.02
313 314 3.235481 TCGAGTTGGGGCGGACAA 61.235 61.111 0.00 0.00 0.00 3.18
314 315 2.281208 CGAGTTGGGGCGGACAAA 60.281 61.111 0.00 0.00 0.00 2.83
315 316 2.613506 CGAGTTGGGGCGGACAAAC 61.614 63.158 0.00 0.00 0.00 2.93
316 317 1.228154 GAGTTGGGGCGGACAAACT 60.228 57.895 1.18 1.18 0.00 2.66
317 318 0.035739 GAGTTGGGGCGGACAAACTA 59.964 55.000 1.56 0.00 0.00 2.24
318 319 0.036306 AGTTGGGGCGGACAAACTAG 59.964 55.000 0.00 0.00 0.00 2.57
319 320 0.035739 GTTGGGGCGGACAAACTAGA 59.964 55.000 0.00 0.00 0.00 2.43
320 321 0.035739 TTGGGGCGGACAAACTAGAC 59.964 55.000 0.00 0.00 0.00 2.59
321 322 1.122632 TGGGGCGGACAAACTAGACA 61.123 55.000 0.00 0.00 0.00 3.41
322 323 0.391263 GGGGCGGACAAACTAGACAG 60.391 60.000 0.00 0.00 0.00 3.51
323 324 0.606604 GGGCGGACAAACTAGACAGA 59.393 55.000 0.00 0.00 0.00 3.41
324 325 1.001633 GGGCGGACAAACTAGACAGAA 59.998 52.381 0.00 0.00 0.00 3.02
325 326 2.354805 GGGCGGACAAACTAGACAGAAT 60.355 50.000 0.00 0.00 0.00 2.40
326 327 2.673368 GGCGGACAAACTAGACAGAATG 59.327 50.000 0.00 0.00 46.00 2.67
344 345 7.892778 CAGAATGTCTAGATCAGATCCAATG 57.107 40.000 6.80 0.00 35.17 2.82
345 346 6.874664 CAGAATGTCTAGATCAGATCCAATGG 59.125 42.308 6.80 0.00 35.17 3.16
346 347 4.613925 TGTCTAGATCAGATCCAATGGC 57.386 45.455 6.80 0.00 35.17 4.40
347 348 4.229639 TGTCTAGATCAGATCCAATGGCT 58.770 43.478 6.80 0.00 35.17 4.75
348 349 4.282957 TGTCTAGATCAGATCCAATGGCTC 59.717 45.833 6.80 0.00 35.17 4.70
349 350 4.527816 GTCTAGATCAGATCCAATGGCTCT 59.472 45.833 6.80 0.00 35.17 4.09
350 351 5.714333 GTCTAGATCAGATCCAATGGCTCTA 59.286 44.000 5.21 0.00 35.17 2.43
351 352 6.380846 GTCTAGATCAGATCCAATGGCTCTAT 59.619 42.308 5.21 0.86 35.17 1.98
352 353 6.958778 TCTAGATCAGATCCAATGGCTCTATT 59.041 38.462 5.21 0.00 0.00 1.73
353 354 5.806818 AGATCAGATCCAATGGCTCTATTG 58.193 41.667 5.21 0.00 37.70 1.90
361 362 2.810274 CAATGGCTCTATTGGTCCATCG 59.190 50.000 0.00 0.00 38.28 3.84
362 363 1.788229 TGGCTCTATTGGTCCATCGA 58.212 50.000 0.00 0.00 0.00 3.59
363 364 1.688735 TGGCTCTATTGGTCCATCGAG 59.311 52.381 0.00 0.33 0.00 4.04
364 365 1.964223 GGCTCTATTGGTCCATCGAGA 59.036 52.381 13.76 7.08 0.00 4.04
365 366 2.564947 GGCTCTATTGGTCCATCGAGAT 59.435 50.000 13.76 0.00 0.00 2.75
366 367 3.007398 GGCTCTATTGGTCCATCGAGATT 59.993 47.826 13.76 0.00 0.00 2.40
367 368 4.220821 GGCTCTATTGGTCCATCGAGATTA 59.779 45.833 13.76 0.00 0.00 1.75
368 369 5.406649 GCTCTATTGGTCCATCGAGATTAG 58.593 45.833 13.76 0.00 0.00 1.73
369 370 5.392767 TCTATTGGTCCATCGAGATTAGC 57.607 43.478 0.00 0.00 0.00 3.09
370 371 2.509052 TTGGTCCATCGAGATTAGCG 57.491 50.000 0.00 0.00 0.00 4.26
371 372 1.399714 TGGTCCATCGAGATTAGCGT 58.600 50.000 0.00 0.00 0.00 5.07
372 373 1.754803 TGGTCCATCGAGATTAGCGTT 59.245 47.619 0.00 0.00 0.00 4.84
373 374 2.223735 TGGTCCATCGAGATTAGCGTTC 60.224 50.000 0.00 0.00 0.00 3.95
374 375 2.395654 GTCCATCGAGATTAGCGTTCC 58.604 52.381 0.00 0.00 0.00 3.62
375 376 1.001706 TCCATCGAGATTAGCGTTCCG 60.002 52.381 0.00 0.00 0.00 4.30
376 377 1.001706 CCATCGAGATTAGCGTTCCGA 60.002 52.381 0.00 0.00 0.00 4.55
377 378 2.543031 CCATCGAGATTAGCGTTCCGAA 60.543 50.000 0.00 0.00 0.00 4.30
378 379 2.470196 TCGAGATTAGCGTTCCGAAG 57.530 50.000 0.00 0.00 0.00 3.79
379 380 2.011947 TCGAGATTAGCGTTCCGAAGA 58.988 47.619 0.00 0.00 0.00 2.87
380 381 2.110226 CGAGATTAGCGTTCCGAAGAC 58.890 52.381 0.00 0.00 0.00 3.01
381 382 2.461903 GAGATTAGCGTTCCGAAGACC 58.538 52.381 0.00 0.00 0.00 3.85
382 383 1.136500 AGATTAGCGTTCCGAAGACCC 59.864 52.381 0.00 0.00 0.00 4.46
383 384 1.136500 GATTAGCGTTCCGAAGACCCT 59.864 52.381 0.00 0.00 0.00 4.34
384 385 1.838112 TTAGCGTTCCGAAGACCCTA 58.162 50.000 0.00 0.00 0.00 3.53
385 386 2.062971 TAGCGTTCCGAAGACCCTAT 57.937 50.000 0.00 0.00 0.00 2.57
386 387 2.062971 AGCGTTCCGAAGACCCTATA 57.937 50.000 0.00 0.00 0.00 1.31
387 388 1.955080 AGCGTTCCGAAGACCCTATAG 59.045 52.381 0.00 0.00 0.00 1.31
388 389 1.602416 GCGTTCCGAAGACCCTATAGC 60.602 57.143 0.00 0.00 0.00 2.97
389 390 1.334779 CGTTCCGAAGACCCTATAGCG 60.335 57.143 0.00 0.00 0.00 4.26
390 391 1.952296 GTTCCGAAGACCCTATAGCGA 59.048 52.381 0.00 0.00 0.00 4.93
391 392 1.893544 TCCGAAGACCCTATAGCGAG 58.106 55.000 0.00 0.00 0.00 5.03
392 393 0.241481 CCGAAGACCCTATAGCGAGC 59.759 60.000 0.00 0.00 0.00 5.03
393 394 1.240256 CGAAGACCCTATAGCGAGCT 58.760 55.000 2.25 2.25 0.00 4.09
394 395 2.424557 CGAAGACCCTATAGCGAGCTA 58.575 52.381 7.31 7.31 0.00 3.32
395 396 3.011119 CGAAGACCCTATAGCGAGCTAT 58.989 50.000 19.78 19.78 41.58 2.97
396 397 3.064271 CGAAGACCCTATAGCGAGCTATC 59.936 52.174 19.51 7.57 39.65 2.08
397 398 3.007473 AGACCCTATAGCGAGCTATCC 57.993 52.381 19.51 6.96 39.65 2.59
398 399 2.578940 AGACCCTATAGCGAGCTATCCT 59.421 50.000 19.51 8.74 39.65 3.24
399 400 2.946990 GACCCTATAGCGAGCTATCCTC 59.053 54.545 19.51 7.81 39.65 3.71
400 401 2.578940 ACCCTATAGCGAGCTATCCTCT 59.421 50.000 19.51 1.03 39.65 3.69
401 402 3.211045 CCCTATAGCGAGCTATCCTCTC 58.789 54.545 19.51 0.00 39.65 3.20
402 403 3.211045 CCTATAGCGAGCTATCCTCTCC 58.789 54.545 19.51 0.00 39.65 3.71
403 404 3.118038 CCTATAGCGAGCTATCCTCTCCT 60.118 52.174 19.51 0.00 39.65 3.69
404 405 2.961531 TAGCGAGCTATCCTCTCCTT 57.038 50.000 0.00 0.00 38.49 3.36
405 406 1.327303 AGCGAGCTATCCTCTCCTTG 58.673 55.000 0.00 0.00 38.49 3.61
406 407 1.036707 GCGAGCTATCCTCTCCTTGT 58.963 55.000 0.00 0.00 38.49 3.16
407 408 1.000717 GCGAGCTATCCTCTCCTTGTC 60.001 57.143 0.00 0.00 38.49 3.18
408 409 1.265635 CGAGCTATCCTCTCCTTGTCG 59.734 57.143 0.00 0.00 38.49 4.35
409 410 1.611491 GAGCTATCCTCTCCTTGTCGG 59.389 57.143 0.00 0.00 37.60 4.79
410 411 0.676736 GCTATCCTCTCCTTGTCGGG 59.323 60.000 0.00 0.00 0.00 5.14
411 412 0.676736 CTATCCTCTCCTTGTCGGGC 59.323 60.000 0.00 0.00 0.00 6.13
412 413 0.032515 TATCCTCTCCTTGTCGGGCA 60.033 55.000 0.00 0.00 0.00 5.36
413 414 1.333636 ATCCTCTCCTTGTCGGGCAG 61.334 60.000 0.00 0.00 0.00 4.85
414 415 1.984570 CCTCTCCTTGTCGGGCAGA 60.985 63.158 0.00 0.00 0.00 4.26
422 423 2.499685 GTCGGGCAGACGGCTATT 59.500 61.111 1.15 0.00 44.01 1.73
423 424 1.153429 GTCGGGCAGACGGCTATTT 60.153 57.895 1.15 0.00 44.01 1.40
424 425 1.153449 TCGGGCAGACGGCTATTTG 60.153 57.895 0.00 0.00 44.01 2.32
425 426 1.449601 CGGGCAGACGGCTATTTGT 60.450 57.895 0.00 0.00 44.01 2.83
426 427 0.179094 CGGGCAGACGGCTATTTGTA 60.179 55.000 0.00 0.00 44.01 2.41
427 428 1.583054 GGGCAGACGGCTATTTGTAG 58.417 55.000 0.00 0.00 44.01 2.74
428 429 1.134491 GGGCAGACGGCTATTTGTAGT 60.134 52.381 0.00 0.00 44.01 2.73
429 430 1.933853 GGCAGACGGCTATTTGTAGTG 59.066 52.381 0.00 0.00 44.01 2.74
430 431 1.933853 GCAGACGGCTATTTGTAGTGG 59.066 52.381 0.00 0.00 40.25 4.00
431 432 1.933853 CAGACGGCTATTTGTAGTGGC 59.066 52.381 0.00 0.00 0.00 5.01
432 433 1.134491 AGACGGCTATTTGTAGTGGCC 60.134 52.381 0.00 0.00 39.43 5.36
433 434 0.616371 ACGGCTATTTGTAGTGGCCA 59.384 50.000 0.00 0.00 42.56 5.36
434 435 1.211949 ACGGCTATTTGTAGTGGCCAT 59.788 47.619 9.72 0.00 42.56 4.40
435 436 1.603802 CGGCTATTTGTAGTGGCCATG 59.396 52.381 9.72 0.00 42.56 3.66
436 437 1.956477 GGCTATTTGTAGTGGCCATGG 59.044 52.381 9.72 7.63 42.08 3.66
437 438 2.654863 GCTATTTGTAGTGGCCATGGT 58.345 47.619 9.72 0.00 0.00 3.55
438 439 2.618709 GCTATTTGTAGTGGCCATGGTC 59.381 50.000 9.72 10.20 0.00 4.02
439 440 1.750193 ATTTGTAGTGGCCATGGTCG 58.250 50.000 9.72 0.00 0.00 4.79
440 441 0.322098 TTTGTAGTGGCCATGGTCGG 60.322 55.000 9.72 0.00 0.00 4.79
441 442 1.485294 TTGTAGTGGCCATGGTCGGT 61.485 55.000 9.72 3.41 0.00 4.69
442 443 1.298667 GTAGTGGCCATGGTCGGTT 59.701 57.895 9.72 1.86 0.00 4.44
443 444 1.024579 GTAGTGGCCATGGTCGGTTG 61.025 60.000 9.72 0.00 0.00 3.77
444 445 1.485294 TAGTGGCCATGGTCGGTTGT 61.485 55.000 9.72 0.00 0.00 3.32
445 446 1.901464 GTGGCCATGGTCGGTTGTT 60.901 57.895 9.72 0.00 0.00 2.83
446 447 1.602323 TGGCCATGGTCGGTTGTTC 60.602 57.895 12.67 0.00 0.00 3.18
447 448 2.686816 GGCCATGGTCGGTTGTTCG 61.687 63.158 14.67 0.00 0.00 3.95
448 449 1.964373 GCCATGGTCGGTTGTTCGT 60.964 57.895 14.67 0.00 0.00 3.85
449 450 1.908066 GCCATGGTCGGTTGTTCGTC 61.908 60.000 14.67 0.00 0.00 4.20
450 451 1.296056 CCATGGTCGGTTGTTCGTCC 61.296 60.000 2.57 0.00 38.48 4.79
451 452 1.373748 ATGGTCGGTTGTTCGTCCG 60.374 57.895 0.00 0.00 46.93 4.79
452 453 2.028043 GGTCGGTTGTTCGTCCGT 59.972 61.111 3.64 0.00 45.88 4.69
453 454 2.305127 GGTCGGTTGTTCGTCCGTG 61.305 63.158 3.64 0.00 45.88 4.94
454 455 2.659244 TCGGTTGTTCGTCCGTGC 60.659 61.111 3.64 0.00 45.88 5.34
455 456 2.962786 CGGTTGTTCGTCCGTGCA 60.963 61.111 0.00 0.00 41.58 4.57
456 457 2.314647 CGGTTGTTCGTCCGTGCAT 61.315 57.895 0.00 0.00 41.58 3.96
457 458 1.495951 GGTTGTTCGTCCGTGCATC 59.504 57.895 0.00 0.00 0.00 3.91
458 459 1.129809 GTTGTTCGTCCGTGCATCG 59.870 57.895 0.00 0.00 39.52 3.84
459 460 1.300311 TTGTTCGTCCGTGCATCGT 60.300 52.632 0.00 0.00 37.94 3.73
460 461 1.279527 TTGTTCGTCCGTGCATCGTC 61.280 55.000 0.00 0.00 37.94 4.20
461 462 1.443872 GTTCGTCCGTGCATCGTCT 60.444 57.895 0.00 0.00 37.94 4.18
462 463 1.007336 GTTCGTCCGTGCATCGTCTT 61.007 55.000 0.00 0.00 37.94 3.01
463 464 1.006825 TTCGTCCGTGCATCGTCTTG 61.007 55.000 0.00 0.00 37.94 3.02
464 465 1.443702 CGTCCGTGCATCGTCTTGA 60.444 57.895 0.00 0.00 37.94 3.02
465 466 0.802222 CGTCCGTGCATCGTCTTGAT 60.802 55.000 0.00 0.00 38.01 2.57
466 467 0.924090 GTCCGTGCATCGTCTTGATC 59.076 55.000 0.00 0.00 34.13 2.92
467 468 0.817654 TCCGTGCATCGTCTTGATCT 59.182 50.000 0.00 0.00 34.13 2.75
468 469 0.926155 CCGTGCATCGTCTTGATCTG 59.074 55.000 0.00 0.00 34.13 2.90
469 470 0.299895 CGTGCATCGTCTTGATCTGC 59.700 55.000 0.00 0.00 34.13 4.26
470 471 1.362768 GTGCATCGTCTTGATCTGCA 58.637 50.000 0.00 0.00 39.62 4.41
471 472 1.326852 GTGCATCGTCTTGATCTGCAG 59.673 52.381 7.63 7.63 41.84 4.41
472 473 1.066645 TGCATCGTCTTGATCTGCAGT 60.067 47.619 14.67 0.42 37.61 4.40
473 474 1.592081 GCATCGTCTTGATCTGCAGTC 59.408 52.381 14.67 11.14 34.13 3.51
474 475 1.851053 CATCGTCTTGATCTGCAGTCG 59.149 52.381 14.67 8.45 34.13 4.18
475 476 0.456824 TCGTCTTGATCTGCAGTCGC 60.457 55.000 14.67 4.98 39.24 5.19
485 486 4.625800 GCAGTCGCAATCCCTTCT 57.374 55.556 0.00 0.00 38.36 2.85
486 487 2.093216 GCAGTCGCAATCCCTTCTG 58.907 57.895 0.00 0.00 38.36 3.02
487 488 1.372087 GCAGTCGCAATCCCTTCTGG 61.372 60.000 0.00 0.00 38.36 3.86
488 489 3.714598 GCAGTCGCAATCCCTTCTGGA 62.715 57.143 0.00 0.00 42.86 3.86
496 497 3.012153 TCCCTTCTGGACTCCATGG 57.988 57.895 4.97 4.97 38.61 3.66
497 498 0.417437 TCCCTTCTGGACTCCATGGA 59.583 55.000 15.27 15.27 38.61 3.41
498 499 1.010046 TCCCTTCTGGACTCCATGGAT 59.990 52.381 16.63 5.60 38.61 3.41
499 500 1.142465 CCCTTCTGGACTCCATGGATG 59.858 57.143 16.63 12.01 35.39 3.51
500 501 1.842562 CCTTCTGGACTCCATGGATGT 59.157 52.381 16.63 15.28 34.57 3.06
501 502 2.240667 CCTTCTGGACTCCATGGATGTT 59.759 50.000 16.63 2.20 34.57 2.71
502 503 3.455910 CCTTCTGGACTCCATGGATGTTA 59.544 47.826 16.63 8.12 34.57 2.41
503 504 4.444022 CCTTCTGGACTCCATGGATGTTAG 60.444 50.000 16.63 15.84 34.57 2.34
504 505 3.724478 TCTGGACTCCATGGATGTTAGT 58.276 45.455 16.63 9.30 30.82 2.24
505 506 3.452264 TCTGGACTCCATGGATGTTAGTG 59.548 47.826 16.63 3.93 30.82 2.74
506 507 3.181329 TGGACTCCATGGATGTTAGTGT 58.819 45.455 16.63 7.65 0.00 3.55
507 508 4.358214 TGGACTCCATGGATGTTAGTGTA 58.642 43.478 16.63 0.00 0.00 2.90
508 509 4.968719 TGGACTCCATGGATGTTAGTGTAT 59.031 41.667 16.63 0.00 0.00 2.29
509 510 5.428457 TGGACTCCATGGATGTTAGTGTATT 59.572 40.000 16.63 0.00 0.00 1.89
510 511 6.069673 TGGACTCCATGGATGTTAGTGTATTT 60.070 38.462 16.63 0.00 0.00 1.40
511 512 6.828785 GGACTCCATGGATGTTAGTGTATTTT 59.171 38.462 16.63 0.00 0.00 1.82
512 513 7.339466 GGACTCCATGGATGTTAGTGTATTTTT 59.661 37.037 16.63 0.00 0.00 1.94
596 597 7.416964 AAAAATGTGCCTGGTATAATTAGCA 57.583 32.000 0.00 0.00 34.75 3.49
597 598 7.416964 AAAATGTGCCTGGTATAATTAGCAA 57.583 32.000 0.00 0.00 35.52 3.91
598 599 7.416964 AAATGTGCCTGGTATAATTAGCAAA 57.583 32.000 0.00 0.00 35.52 3.68
599 600 7.416964 AATGTGCCTGGTATAATTAGCAAAA 57.583 32.000 0.00 0.00 35.52 2.44
600 601 6.842437 TGTGCCTGGTATAATTAGCAAAAA 57.158 33.333 0.00 0.00 35.52 1.94
601 602 6.862209 TGTGCCTGGTATAATTAGCAAAAAG 58.138 36.000 0.00 0.00 35.52 2.27
602 603 5.748630 GTGCCTGGTATAATTAGCAAAAAGC 59.251 40.000 0.00 0.00 46.19 3.51
614 615 3.531262 GCAAAAAGCCAAGCAGAAATG 57.469 42.857 0.00 0.00 37.23 2.32
615 616 2.350102 GCAAAAAGCCAAGCAGAAATGC 60.350 45.455 0.00 0.00 37.23 3.56
616 617 2.873472 CAAAAAGCCAAGCAGAAATGCA 59.127 40.909 2.73 0.00 37.25 3.96
617 618 2.159327 AAAGCCAAGCAGAAATGCAC 57.841 45.000 2.73 0.00 37.25 4.57
618 619 1.042229 AAGCCAAGCAGAAATGCACA 58.958 45.000 2.73 0.00 37.25 4.57
619 620 1.263356 AGCCAAGCAGAAATGCACAT 58.737 45.000 2.73 0.00 37.25 3.21
620 621 1.067142 AGCCAAGCAGAAATGCACATG 60.067 47.619 2.73 0.00 37.25 3.21
621 622 1.337447 GCCAAGCAGAAATGCACATGT 60.337 47.619 2.73 0.00 37.25 3.21
622 623 2.094597 GCCAAGCAGAAATGCACATGTA 60.095 45.455 0.00 0.00 37.25 2.29
623 624 3.614630 GCCAAGCAGAAATGCACATGTAA 60.615 43.478 0.00 0.00 37.25 2.41
624 625 4.751060 CCAAGCAGAAATGCACATGTAAT 58.249 39.130 0.00 0.00 37.25 1.89
625 626 5.172934 CCAAGCAGAAATGCACATGTAATT 58.827 37.500 0.00 0.00 37.25 1.40
626 627 5.062934 CCAAGCAGAAATGCACATGTAATTG 59.937 40.000 0.00 0.00 37.25 2.32
627 628 4.751060 AGCAGAAATGCACATGTAATTGG 58.249 39.130 0.00 0.00 37.25 3.16
628 629 4.463539 AGCAGAAATGCACATGTAATTGGA 59.536 37.500 0.00 0.00 37.25 3.53
629 630 5.047164 AGCAGAAATGCACATGTAATTGGAA 60.047 36.000 0.00 0.00 37.25 3.53
630 631 5.290158 GCAGAAATGCACATGTAATTGGAAG 59.710 40.000 0.00 0.00 34.41 3.46
631 632 6.392354 CAGAAATGCACATGTAATTGGAAGT 58.608 36.000 0.00 0.00 0.00 3.01
632 633 6.869913 CAGAAATGCACATGTAATTGGAAGTT 59.130 34.615 0.00 0.00 0.00 2.66
633 634 7.385752 CAGAAATGCACATGTAATTGGAAGTTT 59.614 33.333 0.00 0.00 0.00 2.66
634 635 7.385752 AGAAATGCACATGTAATTGGAAGTTTG 59.614 33.333 0.00 0.00 0.00 2.93
635 636 4.880759 TGCACATGTAATTGGAAGTTTGG 58.119 39.130 0.00 0.00 0.00 3.28
636 637 4.586421 TGCACATGTAATTGGAAGTTTGGA 59.414 37.500 0.00 0.00 0.00 3.53
637 638 5.069648 TGCACATGTAATTGGAAGTTTGGAA 59.930 36.000 0.00 0.00 0.00 3.53
638 639 5.405269 GCACATGTAATTGGAAGTTTGGAAC 59.595 40.000 0.00 0.00 0.00 3.62
639 640 6.511416 CACATGTAATTGGAAGTTTGGAACA 58.489 36.000 0.00 0.00 0.00 3.18
640 641 6.642131 CACATGTAATTGGAAGTTTGGAACAG 59.358 38.462 0.00 0.00 42.39 3.16
641 642 6.549364 ACATGTAATTGGAAGTTTGGAACAGA 59.451 34.615 0.00 0.00 42.39 3.41
642 643 6.633500 TGTAATTGGAAGTTTGGAACAGAG 57.367 37.500 0.00 0.00 42.39 3.35
643 644 5.534654 TGTAATTGGAAGTTTGGAACAGAGG 59.465 40.000 0.00 0.00 42.39 3.69
644 645 1.981256 TGGAAGTTTGGAACAGAGGC 58.019 50.000 0.00 0.00 42.39 4.70
645 646 1.214175 TGGAAGTTTGGAACAGAGGCA 59.786 47.619 0.00 0.00 42.39 4.75
646 647 1.882623 GGAAGTTTGGAACAGAGGCAG 59.117 52.381 0.00 0.00 42.39 4.85
647 648 1.268079 GAAGTTTGGAACAGAGGCAGC 59.732 52.381 0.00 0.00 42.39 5.25
648 649 0.538287 AGTTTGGAACAGAGGCAGCC 60.538 55.000 1.84 1.84 42.39 4.85
649 650 1.600636 TTTGGAACAGAGGCAGCCG 60.601 57.895 5.55 0.00 42.39 5.52
650 651 2.050836 TTTGGAACAGAGGCAGCCGA 62.051 55.000 5.55 0.00 42.39 5.54
651 652 2.435059 GGAACAGAGGCAGCCGAC 60.435 66.667 5.55 4.56 0.00 4.79
652 653 2.811317 GAACAGAGGCAGCCGACG 60.811 66.667 5.55 0.08 0.00 5.12
665 666 4.111016 CGACGCAGGCTACACGGA 62.111 66.667 8.35 0.00 0.00 4.69
666 667 2.506438 GACGCAGGCTACACGGAC 60.506 66.667 8.35 0.00 0.00 4.79
667 668 2.989824 ACGCAGGCTACACGGACT 60.990 61.111 8.35 0.00 0.00 3.85
668 669 2.261671 CGCAGGCTACACGGACTT 59.738 61.111 0.00 0.00 0.00 3.01
669 670 2.094659 CGCAGGCTACACGGACTTG 61.095 63.158 0.00 0.00 0.00 3.16
670 671 2.391389 GCAGGCTACACGGACTTGC 61.391 63.158 0.00 0.00 0.00 4.01
671 672 1.005037 CAGGCTACACGGACTTGCA 60.005 57.895 0.00 0.00 0.00 4.08
672 673 0.391661 CAGGCTACACGGACTTGCAT 60.392 55.000 0.00 0.00 0.00 3.96
686 687 5.702670 CGGACTTGCATATGGATAAGTTCAT 59.297 40.000 4.56 0.00 33.83 2.57
696 701 4.703897 TGGATAAGTTCATCCGATCAACC 58.296 43.478 0.00 0.00 46.51 3.77
704 709 2.368548 TCATCCGATCAACCGATCCATT 59.631 45.455 0.00 0.00 44.55 3.16
705 710 2.526304 TCCGATCAACCGATCCATTC 57.474 50.000 0.00 0.00 44.55 2.67
710 716 2.710096 TCAACCGATCCATTCCTTCC 57.290 50.000 0.00 0.00 0.00 3.46
730 736 3.253188 TCCATTCAAGCACAGTAGCAAAC 59.747 43.478 0.00 0.00 36.85 2.93
747 753 4.511826 AGCAAACAACTAGCTACTCACAAC 59.488 41.667 0.00 0.00 36.73 3.32
863 873 4.530857 CGTAAGCTCTGGCCCCCG 62.531 72.222 0.00 0.00 39.73 5.73
1611 1643 0.982852 TCCTCATCATCGCCACCCTT 60.983 55.000 0.00 0.00 0.00 3.95
1668 1706 2.131067 GCTAGCTCGCTTCCCTCCT 61.131 63.158 7.70 0.00 0.00 3.69
1683 1721 0.752658 CTCCTGTCCATGCGACCATA 59.247 55.000 10.60 0.00 41.18 2.74
1698 1736 3.246936 CGACCATACATGCATGAACTGAG 59.753 47.826 32.75 16.92 0.00 3.35
1710 1748 4.574013 GCATGAACTGAGAATCCTAACAGG 59.426 45.833 0.00 0.00 36.46 4.00
1934 1975 4.210120 GCACCATCAGATCGAGACAATAAC 59.790 45.833 0.00 0.00 0.00 1.89
2240 2295 1.364171 CAGGATCATCGGGTCCGTC 59.636 63.158 9.36 0.00 39.54 4.79
2317 2372 1.001815 GAAGAAGGAGATCGAGGCGAG 60.002 57.143 0.00 0.00 39.91 5.03
2533 2588 0.890542 TCTTGATGCTGTGGTGGTGC 60.891 55.000 0.00 0.00 0.00 5.01
2626 2681 5.172687 TGGTAAAACATATGCTGTGAGGA 57.827 39.130 1.58 0.00 38.39 3.71
2839 2898 2.960688 GCTTCCCAACTCCTCGCCT 61.961 63.158 0.00 0.00 0.00 5.52
2840 2899 1.614241 GCTTCCCAACTCCTCGCCTA 61.614 60.000 0.00 0.00 0.00 3.93
2841 2900 0.461961 CTTCCCAACTCCTCGCCTAG 59.538 60.000 0.00 0.00 0.00 3.02
3135 3195 2.224606 GCTCCCACCATACATGTGATG 58.775 52.381 9.11 8.27 0.00 3.07
3136 3196 2.421952 GCTCCCACCATACATGTGATGT 60.422 50.000 9.11 0.00 46.92 3.06
3253 3313 6.731467 TGGAAGGAGCTAGGAATAAACATTT 58.269 36.000 0.00 0.00 0.00 2.32
3283 3343 6.950619 AGAAAAGAAAAGCATGGAATCCTACT 59.049 34.615 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.918630 CTATTCTTGTTTTGAATGAGACCAAAT 57.081 29.630 0.00 0.00 35.90 2.32
4 5 9.130661 TCTATTCTTGTTTTGAATGAGACCAAA 57.869 29.630 0.00 0.00 35.90 3.28
5 6 8.690203 TCTATTCTTGTTTTGAATGAGACCAA 57.310 30.769 0.00 0.00 35.90 3.67
6 7 8.868522 ATCTATTCTTGTTTTGAATGAGACCA 57.131 30.769 0.00 0.00 35.90 4.02
12 13 9.573133 GGGTTGTATCTATTCTTGTTTTGAATG 57.427 33.333 0.00 0.00 35.90 2.67
13 14 9.308000 TGGGTTGTATCTATTCTTGTTTTGAAT 57.692 29.630 0.00 0.00 37.78 2.57
14 15 8.573035 GTGGGTTGTATCTATTCTTGTTTTGAA 58.427 33.333 0.00 0.00 0.00 2.69
15 16 7.721842 TGTGGGTTGTATCTATTCTTGTTTTGA 59.278 33.333 0.00 0.00 0.00 2.69
16 17 7.881142 TGTGGGTTGTATCTATTCTTGTTTTG 58.119 34.615 0.00 0.00 0.00 2.44
17 18 8.650143 ATGTGGGTTGTATCTATTCTTGTTTT 57.350 30.769 0.00 0.00 0.00 2.43
18 19 7.888021 TGATGTGGGTTGTATCTATTCTTGTTT 59.112 33.333 0.00 0.00 0.00 2.83
19 20 7.402054 TGATGTGGGTTGTATCTATTCTTGTT 58.598 34.615 0.00 0.00 0.00 2.83
20 21 6.957631 TGATGTGGGTTGTATCTATTCTTGT 58.042 36.000 0.00 0.00 0.00 3.16
21 22 6.484643 CCTGATGTGGGTTGTATCTATTCTTG 59.515 42.308 0.00 0.00 0.00 3.02
22 23 6.386927 TCCTGATGTGGGTTGTATCTATTCTT 59.613 38.462 0.00 0.00 0.00 2.52
23 24 5.905331 TCCTGATGTGGGTTGTATCTATTCT 59.095 40.000 0.00 0.00 0.00 2.40
24 25 5.992217 GTCCTGATGTGGGTTGTATCTATTC 59.008 44.000 0.00 0.00 0.00 1.75
25 26 5.428457 TGTCCTGATGTGGGTTGTATCTATT 59.572 40.000 0.00 0.00 0.00 1.73
26 27 4.968719 TGTCCTGATGTGGGTTGTATCTAT 59.031 41.667 0.00 0.00 0.00 1.98
27 28 4.161565 GTGTCCTGATGTGGGTTGTATCTA 59.838 45.833 0.00 0.00 0.00 1.98
28 29 3.055094 GTGTCCTGATGTGGGTTGTATCT 60.055 47.826 0.00 0.00 0.00 1.98
29 30 3.270877 GTGTCCTGATGTGGGTTGTATC 58.729 50.000 0.00 0.00 0.00 2.24
30 31 2.642311 TGTGTCCTGATGTGGGTTGTAT 59.358 45.455 0.00 0.00 0.00 2.29
31 32 2.050918 TGTGTCCTGATGTGGGTTGTA 58.949 47.619 0.00 0.00 0.00 2.41
32 33 0.843309 TGTGTCCTGATGTGGGTTGT 59.157 50.000 0.00 0.00 0.00 3.32
33 34 1.238439 GTGTGTCCTGATGTGGGTTG 58.762 55.000 0.00 0.00 0.00 3.77
34 35 0.250295 CGTGTGTCCTGATGTGGGTT 60.250 55.000 0.00 0.00 0.00 4.11
35 36 1.371183 CGTGTGTCCTGATGTGGGT 59.629 57.895 0.00 0.00 0.00 4.51
36 37 2.034879 GCGTGTGTCCTGATGTGGG 61.035 63.158 0.00 0.00 0.00 4.61
37 38 0.674581 ATGCGTGTGTCCTGATGTGG 60.675 55.000 0.00 0.00 0.00 4.17
38 39 0.723414 GATGCGTGTGTCCTGATGTG 59.277 55.000 0.00 0.00 0.00 3.21
39 40 0.610174 AGATGCGTGTGTCCTGATGT 59.390 50.000 0.00 0.00 0.00 3.06
40 41 1.730501 AAGATGCGTGTGTCCTGATG 58.269 50.000 0.00 0.00 0.00 3.07
41 42 3.827008 ATAAGATGCGTGTGTCCTGAT 57.173 42.857 0.00 0.00 0.00 2.90
42 43 3.490933 GCTATAAGATGCGTGTGTCCTGA 60.491 47.826 0.00 0.00 0.00 3.86
43 44 2.797156 GCTATAAGATGCGTGTGTCCTG 59.203 50.000 0.00 0.00 0.00 3.86
44 45 2.430694 TGCTATAAGATGCGTGTGTCCT 59.569 45.455 0.00 0.00 0.00 3.85
45 46 2.821546 TGCTATAAGATGCGTGTGTCC 58.178 47.619 0.00 0.00 0.00 4.02
46 47 4.051237 TGATGCTATAAGATGCGTGTGTC 58.949 43.478 0.00 0.00 0.00 3.67
47 48 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
48 49 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
49 50 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
50 51 5.602458 AATGTGATGCTATAAGATGCGTG 57.398 39.130 0.00 0.00 0.00 5.34
51 52 7.728847 TTAAATGTGATGCTATAAGATGCGT 57.271 32.000 0.00 0.00 0.00 5.24
52 53 7.695201 CCATTAAATGTGATGCTATAAGATGCG 59.305 37.037 0.00 0.00 0.00 4.73
53 54 7.487189 GCCATTAAATGTGATGCTATAAGATGC 59.513 37.037 0.00 0.00 0.00 3.91
54 55 8.737175 AGCCATTAAATGTGATGCTATAAGATG 58.263 33.333 0.00 0.00 0.00 2.90
55 56 8.874744 AGCCATTAAATGTGATGCTATAAGAT 57.125 30.769 0.00 0.00 0.00 2.40
56 57 9.964354 ATAGCCATTAAATGTGATGCTATAAGA 57.036 29.630 0.00 0.00 0.00 2.10
115 116 9.944376 AATTACAGTTTTGCTAGAACTCATCTA 57.056 29.630 0.00 0.00 39.71 1.98
116 117 8.854614 AATTACAGTTTTGCTAGAACTCATCT 57.145 30.769 0.00 0.00 42.48 2.90
117 118 9.334693 CAAATTACAGTTTTGCTAGAACTCATC 57.665 33.333 0.00 0.00 35.26 2.92
118 119 8.850156 ACAAATTACAGTTTTGCTAGAACTCAT 58.150 29.630 0.00 0.00 37.54 2.90
119 120 8.220755 ACAAATTACAGTTTTGCTAGAACTCA 57.779 30.769 0.00 0.00 37.54 3.41
124 125 9.719355 TCTCATACAAATTACAGTTTTGCTAGA 57.281 29.630 0.00 0.00 37.54 2.43
125 126 9.760660 GTCTCATACAAATTACAGTTTTGCTAG 57.239 33.333 0.00 0.00 37.54 3.42
126 127 9.278978 TGTCTCATACAAATTACAGTTTTGCTA 57.721 29.630 0.00 0.00 37.54 3.49
127 128 8.165239 TGTCTCATACAAATTACAGTTTTGCT 57.835 30.769 0.00 0.00 37.54 3.91
128 129 8.970691 ATGTCTCATACAAATTACAGTTTTGC 57.029 30.769 0.00 0.00 42.70 3.68
131 132 9.431887 ACGTATGTCTCATACAAATTACAGTTT 57.568 29.630 16.55 0.00 42.70 2.66
132 133 8.997621 ACGTATGTCTCATACAAATTACAGTT 57.002 30.769 16.55 0.00 42.70 3.16
133 134 8.248253 TGACGTATGTCTCATACAAATTACAGT 58.752 33.333 15.91 6.61 45.70 3.55
134 135 8.628882 TGACGTATGTCTCATACAAATTACAG 57.371 34.615 15.91 4.19 45.70 2.74
135 136 9.244799 GATGACGTATGTCTCATACAAATTACA 57.755 33.333 15.91 8.98 45.70 2.41
136 137 9.464714 AGATGACGTATGTCTCATACAAATTAC 57.535 33.333 15.91 6.40 45.70 1.89
137 138 9.678941 GAGATGACGTATGTCTCATACAAATTA 57.321 33.333 15.91 0.00 45.70 1.40
138 139 8.197439 TGAGATGACGTATGTCTCATACAAATT 58.803 33.333 17.90 2.88 45.70 1.82
139 140 7.716612 TGAGATGACGTATGTCTCATACAAAT 58.283 34.615 17.90 8.69 45.70 2.32
140 141 7.095695 TGAGATGACGTATGTCTCATACAAA 57.904 36.000 17.90 5.23 45.70 2.83
141 142 6.238759 CCTGAGATGACGTATGTCTCATACAA 60.239 42.308 20.54 5.01 45.10 2.41
142 143 5.239525 CCTGAGATGACGTATGTCTCATACA 59.760 44.000 20.54 8.80 45.10 2.29
143 144 5.239744 ACCTGAGATGACGTATGTCTCATAC 59.760 44.000 20.54 9.13 45.10 2.39
144 145 5.377478 ACCTGAGATGACGTATGTCTCATA 58.623 41.667 20.54 6.07 45.10 2.15
145 146 4.211125 ACCTGAGATGACGTATGTCTCAT 58.789 43.478 20.54 6.24 45.10 2.90
146 147 3.621558 ACCTGAGATGACGTATGTCTCA 58.378 45.455 19.63 19.63 45.70 3.27
147 148 4.640789 AACCTGAGATGACGTATGTCTC 57.359 45.455 15.91 14.18 45.70 3.36
148 149 4.338682 GGTAACCTGAGATGACGTATGTCT 59.661 45.833 15.91 2.06 45.70 3.41
149 150 4.097437 TGGTAACCTGAGATGACGTATGTC 59.903 45.833 8.21 8.21 45.71 3.06
150 151 4.021229 TGGTAACCTGAGATGACGTATGT 58.979 43.478 0.00 0.00 0.00 2.29
151 152 4.338400 TCTGGTAACCTGAGATGACGTATG 59.662 45.833 0.00 0.00 0.00 2.39
152 153 4.338682 GTCTGGTAACCTGAGATGACGTAT 59.661 45.833 0.00 0.00 32.29 3.06
153 154 3.693085 GTCTGGTAACCTGAGATGACGTA 59.307 47.826 0.00 0.00 32.29 3.57
154 155 2.492484 GTCTGGTAACCTGAGATGACGT 59.508 50.000 0.00 0.00 32.29 4.34
155 156 2.478031 CGTCTGGTAACCTGAGATGACG 60.478 54.545 0.00 0.00 39.61 4.35
156 157 2.159226 CCGTCTGGTAACCTGAGATGAC 60.159 54.545 0.00 0.00 32.29 3.06
157 158 2.100197 CCGTCTGGTAACCTGAGATGA 58.900 52.381 0.00 0.00 32.29 2.92
158 159 2.100197 TCCGTCTGGTAACCTGAGATG 58.900 52.381 0.00 0.00 32.29 2.90
159 160 2.100989 GTCCGTCTGGTAACCTGAGAT 58.899 52.381 0.00 0.00 32.29 2.75
160 161 1.202964 TGTCCGTCTGGTAACCTGAGA 60.203 52.381 0.00 0.00 32.29 3.27
161 162 1.067776 GTGTCCGTCTGGTAACCTGAG 60.068 57.143 0.00 0.00 32.29 3.35
162 163 0.963962 GTGTCCGTCTGGTAACCTGA 59.036 55.000 0.00 0.00 36.30 3.86
163 164 0.677288 TGTGTCCGTCTGGTAACCTG 59.323 55.000 0.00 0.00 36.30 4.00
164 165 0.966920 CTGTGTCCGTCTGGTAACCT 59.033 55.000 0.00 0.00 36.30 3.50
165 166 0.037605 CCTGTGTCCGTCTGGTAACC 60.038 60.000 0.00 0.00 36.30 2.85
166 167 0.037605 CCCTGTGTCCGTCTGGTAAC 60.038 60.000 0.00 0.00 36.30 2.50
167 168 1.823169 GCCCTGTGTCCGTCTGGTAA 61.823 60.000 0.00 0.00 36.30 2.85
168 169 2.280552 GCCCTGTGTCCGTCTGGTA 61.281 63.158 0.00 0.00 36.30 3.25
169 170 3.626924 GCCCTGTGTCCGTCTGGT 61.627 66.667 0.00 0.00 36.30 4.00
170 171 3.625897 TGCCCTGTGTCCGTCTGG 61.626 66.667 0.00 0.00 0.00 3.86
171 172 2.357517 GTGCCCTGTGTCCGTCTG 60.358 66.667 0.00 0.00 0.00 3.51
172 173 2.524394 AGTGCCCTGTGTCCGTCT 60.524 61.111 0.00 0.00 0.00 4.18
173 174 2.357517 CAGTGCCCTGTGTCCGTC 60.358 66.667 0.00 0.00 33.80 4.79
186 187 0.030638 CCGAACTTGGGCAAACAGTG 59.969 55.000 0.00 0.00 0.00 3.66
187 188 0.106918 TCCGAACTTGGGCAAACAGT 60.107 50.000 0.00 0.00 0.00 3.55
188 189 0.310854 GTCCGAACTTGGGCAAACAG 59.689 55.000 0.00 0.00 32.44 3.16
189 190 1.104577 GGTCCGAACTTGGGCAAACA 61.105 55.000 0.00 0.00 34.42 2.83
190 191 0.822121 AGGTCCGAACTTGGGCAAAC 60.822 55.000 0.00 0.00 34.42 2.93
191 192 0.536460 GAGGTCCGAACTTGGGCAAA 60.536 55.000 0.00 0.00 34.42 3.68
192 193 1.072505 GAGGTCCGAACTTGGGCAA 59.927 57.895 0.00 0.00 34.42 4.52
193 194 2.747686 GAGGTCCGAACTTGGGCA 59.252 61.111 0.00 0.00 34.42 5.36
194 195 2.046217 GGAGGTCCGAACTTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
213 214 2.642996 TATGGCTGTGACCCGCATCG 62.643 60.000 0.00 0.00 0.00 3.84
214 215 0.250467 ATATGGCTGTGACCCGCATC 60.250 55.000 0.00 0.00 0.00 3.91
215 216 0.183492 AATATGGCTGTGACCCGCAT 59.817 50.000 0.00 0.00 0.00 4.73
216 217 0.463654 GAATATGGCTGTGACCCGCA 60.464 55.000 0.00 0.00 0.00 5.69
217 218 1.166531 GGAATATGGCTGTGACCCGC 61.167 60.000 0.00 0.00 0.00 6.13
218 219 0.469917 AGGAATATGGCTGTGACCCG 59.530 55.000 0.00 0.00 0.00 5.28
219 220 1.972872 CAGGAATATGGCTGTGACCC 58.027 55.000 0.00 0.00 0.00 4.46
220 221 1.312815 GCAGGAATATGGCTGTGACC 58.687 55.000 0.00 0.00 0.00 4.02
221 222 1.312815 GGCAGGAATATGGCTGTGAC 58.687 55.000 0.00 0.00 42.21 3.67
222 223 3.806941 GGCAGGAATATGGCTGTGA 57.193 52.632 0.00 0.00 42.21 3.58
227 228 1.335145 ATGCAAGGCAGGAATATGGC 58.665 50.000 0.00 0.00 43.65 4.40
228 229 2.036733 CCAATGCAAGGCAGGAATATGG 59.963 50.000 0.00 0.00 43.65 2.74
229 230 2.960384 TCCAATGCAAGGCAGGAATATG 59.040 45.455 3.76 0.00 43.65 1.78
230 231 3.317455 TCCAATGCAAGGCAGGAATAT 57.683 42.857 3.76 0.00 43.65 1.28
231 232 2.824689 TCCAATGCAAGGCAGGAATA 57.175 45.000 3.76 0.00 43.65 1.75
232 233 2.170012 ATCCAATGCAAGGCAGGAAT 57.830 45.000 3.76 0.00 43.65 3.01
233 234 1.941377 AATCCAATGCAAGGCAGGAA 58.059 45.000 3.76 0.00 43.65 3.36
234 235 2.824689 TAATCCAATGCAAGGCAGGA 57.175 45.000 3.76 2.23 43.65 3.86
235 236 5.733620 AATATAATCCAATGCAAGGCAGG 57.266 39.130 3.76 0.00 43.65 4.85
236 237 7.218228 TGTAATATAATCCAATGCAAGGCAG 57.782 36.000 3.76 0.00 43.65 4.85
237 238 7.594351 TTGTAATATAATCCAATGCAAGGCA 57.406 32.000 3.76 0.00 44.86 4.75
238 239 8.885494 TTTTGTAATATAATCCAATGCAAGGC 57.115 30.769 3.76 0.00 0.00 4.35
255 256 9.066892 ACGCCACTATTGATATCATTTTGTAAT 57.933 29.630 6.17 0.00 0.00 1.89
256 257 8.445275 ACGCCACTATTGATATCATTTTGTAA 57.555 30.769 6.17 0.00 0.00 2.41
257 258 8.984764 GTACGCCACTATTGATATCATTTTGTA 58.015 33.333 6.17 0.16 0.00 2.41
258 259 6.942532 ACGCCACTATTGATATCATTTTGT 57.057 33.333 6.17 2.23 0.00 2.83
259 260 7.860613 TGTACGCCACTATTGATATCATTTTG 58.139 34.615 6.17 4.47 0.00 2.44
260 261 7.173218 CCTGTACGCCACTATTGATATCATTTT 59.827 37.037 6.17 0.00 0.00 1.82
261 262 6.650807 CCTGTACGCCACTATTGATATCATTT 59.349 38.462 6.17 0.08 0.00 2.32
262 263 6.166279 CCTGTACGCCACTATTGATATCATT 58.834 40.000 6.17 5.79 0.00 2.57
263 264 5.246203 ACCTGTACGCCACTATTGATATCAT 59.754 40.000 6.17 0.00 0.00 2.45
264 265 4.587262 ACCTGTACGCCACTATTGATATCA 59.413 41.667 0.00 0.00 0.00 2.15
265 266 5.135508 ACCTGTACGCCACTATTGATATC 57.864 43.478 0.00 0.00 0.00 1.63
266 267 5.163343 ACAACCTGTACGCCACTATTGATAT 60.163 40.000 0.00 0.00 0.00 1.63
267 268 4.160814 ACAACCTGTACGCCACTATTGATA 59.839 41.667 0.00 0.00 0.00 2.15
268 269 3.055385 ACAACCTGTACGCCACTATTGAT 60.055 43.478 0.00 0.00 0.00 2.57
269 270 2.300723 ACAACCTGTACGCCACTATTGA 59.699 45.455 0.00 0.00 0.00 2.57
270 271 2.695359 ACAACCTGTACGCCACTATTG 58.305 47.619 0.00 0.00 0.00 1.90
271 272 3.412237 AACAACCTGTACGCCACTATT 57.588 42.857 0.00 0.00 0.00 1.73
272 273 3.007614 AGAAACAACCTGTACGCCACTAT 59.992 43.478 0.00 0.00 0.00 2.12
273 274 2.366266 AGAAACAACCTGTACGCCACTA 59.634 45.455 0.00 0.00 0.00 2.74
274 275 1.140252 AGAAACAACCTGTACGCCACT 59.860 47.619 0.00 0.00 0.00 4.00
275 276 1.263217 CAGAAACAACCTGTACGCCAC 59.737 52.381 0.00 0.00 0.00 5.01
276 277 1.134340 ACAGAAACAACCTGTACGCCA 60.134 47.619 0.00 0.00 42.51 5.69
277 278 1.529865 GACAGAAACAACCTGTACGCC 59.470 52.381 0.00 0.00 44.14 5.68
278 279 1.191647 CGACAGAAACAACCTGTACGC 59.808 52.381 0.00 0.00 44.14 4.42
279 280 2.724690 CTCGACAGAAACAACCTGTACG 59.275 50.000 0.00 0.00 44.14 3.67
280 281 3.714391 ACTCGACAGAAACAACCTGTAC 58.286 45.455 0.00 0.00 44.14 2.90
281 282 4.116961 CAACTCGACAGAAACAACCTGTA 58.883 43.478 0.00 0.00 44.14 2.74
282 283 2.936498 CAACTCGACAGAAACAACCTGT 59.064 45.455 0.00 0.00 46.51 4.00
283 284 2.287915 CCAACTCGACAGAAACAACCTG 59.712 50.000 0.00 0.00 37.64 4.00
284 285 2.561569 CCAACTCGACAGAAACAACCT 58.438 47.619 0.00 0.00 0.00 3.50
285 286 1.602377 CCCAACTCGACAGAAACAACC 59.398 52.381 0.00 0.00 0.00 3.77
286 287 1.602377 CCCCAACTCGACAGAAACAAC 59.398 52.381 0.00 0.00 0.00 3.32
287 288 1.961793 CCCCAACTCGACAGAAACAA 58.038 50.000 0.00 0.00 0.00 2.83
288 289 0.534203 GCCCCAACTCGACAGAAACA 60.534 55.000 0.00 0.00 0.00 2.83
289 290 1.566018 CGCCCCAACTCGACAGAAAC 61.566 60.000 0.00 0.00 0.00 2.78
290 291 1.301401 CGCCCCAACTCGACAGAAA 60.301 57.895 0.00 0.00 0.00 2.52
291 292 2.342279 CGCCCCAACTCGACAGAA 59.658 61.111 0.00 0.00 0.00 3.02
292 293 3.691342 CCGCCCCAACTCGACAGA 61.691 66.667 0.00 0.00 0.00 3.41
293 294 3.691342 TCCGCCCCAACTCGACAG 61.691 66.667 0.00 0.00 0.00 3.51
294 295 3.998672 GTCCGCCCCAACTCGACA 61.999 66.667 0.00 0.00 0.00 4.35
295 296 2.999739 TTTGTCCGCCCCAACTCGAC 63.000 60.000 0.00 0.00 0.00 4.20
296 297 2.809307 TTTGTCCGCCCCAACTCGA 61.809 57.895 0.00 0.00 0.00 4.04
297 298 2.281208 TTTGTCCGCCCCAACTCG 60.281 61.111 0.00 0.00 0.00 4.18
298 299 0.035739 TAGTTTGTCCGCCCCAACTC 59.964 55.000 0.00 0.00 0.00 3.01
299 300 0.036306 CTAGTTTGTCCGCCCCAACT 59.964 55.000 0.00 0.00 0.00 3.16
300 301 0.035739 TCTAGTTTGTCCGCCCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
301 302 0.035739 GTCTAGTTTGTCCGCCCCAA 59.964 55.000 0.00 0.00 0.00 4.12
302 303 1.122632 TGTCTAGTTTGTCCGCCCCA 61.123 55.000 0.00 0.00 0.00 4.96
303 304 0.391263 CTGTCTAGTTTGTCCGCCCC 60.391 60.000 0.00 0.00 0.00 5.80
304 305 0.606604 TCTGTCTAGTTTGTCCGCCC 59.393 55.000 0.00 0.00 0.00 6.13
305 306 2.450609 TTCTGTCTAGTTTGTCCGCC 57.549 50.000 0.00 0.00 0.00 6.13
306 307 3.326747 ACATTCTGTCTAGTTTGTCCGC 58.673 45.455 0.00 0.00 0.00 5.54
319 320 7.443477 CATTGGATCTGATCTAGACATTCTGT 58.557 38.462 16.61 0.00 38.49 3.41
320 321 6.874664 CCATTGGATCTGATCTAGACATTCTG 59.125 42.308 16.61 0.00 38.49 3.02
321 322 6.520401 GCCATTGGATCTGATCTAGACATTCT 60.520 42.308 16.61 0.00 38.49 2.40
322 323 5.642919 GCCATTGGATCTGATCTAGACATTC 59.357 44.000 16.61 0.00 38.49 2.67
323 324 5.310068 AGCCATTGGATCTGATCTAGACATT 59.690 40.000 16.61 1.44 38.49 2.71
324 325 4.845225 AGCCATTGGATCTGATCTAGACAT 59.155 41.667 16.61 0.00 38.49 3.06
325 326 4.229639 AGCCATTGGATCTGATCTAGACA 58.770 43.478 16.61 4.18 38.49 3.41
326 327 4.819769 GAGCCATTGGATCTGATCTAGAC 58.180 47.826 13.71 1.62 38.49 2.59
340 341 2.810274 CGATGGACCAATAGAGCCATTG 59.190 50.000 0.00 0.00 41.00 2.82
341 342 2.705658 TCGATGGACCAATAGAGCCATT 59.294 45.455 0.00 0.00 41.00 3.16
342 343 2.301296 CTCGATGGACCAATAGAGCCAT 59.699 50.000 0.00 0.00 43.46 4.40
343 344 1.688735 CTCGATGGACCAATAGAGCCA 59.311 52.381 0.00 0.00 34.45 4.75
344 345 1.964223 TCTCGATGGACCAATAGAGCC 59.036 52.381 15.41 0.00 31.48 4.70
345 346 3.951775 ATCTCGATGGACCAATAGAGC 57.048 47.619 15.41 0.00 31.48 4.09
346 347 5.406649 GCTAATCTCGATGGACCAATAGAG 58.593 45.833 14.52 14.52 32.37 2.43
347 348 4.082733 CGCTAATCTCGATGGACCAATAGA 60.083 45.833 0.00 2.06 0.00 1.98
348 349 4.169508 CGCTAATCTCGATGGACCAATAG 58.830 47.826 0.00 0.00 0.00 1.73
349 350 3.572682 ACGCTAATCTCGATGGACCAATA 59.427 43.478 0.00 0.00 0.00 1.90
350 351 2.365617 ACGCTAATCTCGATGGACCAAT 59.634 45.455 0.00 0.00 0.00 3.16
351 352 1.754803 ACGCTAATCTCGATGGACCAA 59.245 47.619 0.00 0.00 0.00 3.67
352 353 1.399714 ACGCTAATCTCGATGGACCA 58.600 50.000 0.00 0.00 0.00 4.02
353 354 2.395654 GAACGCTAATCTCGATGGACC 58.604 52.381 0.00 0.00 0.00 4.46
354 355 2.395654 GGAACGCTAATCTCGATGGAC 58.604 52.381 0.00 0.00 0.00 4.02
355 356 2.795175 GGAACGCTAATCTCGATGGA 57.205 50.000 0.00 0.00 0.00 3.41
370 371 1.952296 TCGCTATAGGGTCTTCGGAAC 59.048 52.381 15.71 0.00 0.00 3.62
371 372 2.228059 CTCGCTATAGGGTCTTCGGAA 58.772 52.381 15.71 0.00 0.00 4.30
372 373 1.893544 CTCGCTATAGGGTCTTCGGA 58.106 55.000 15.71 0.00 0.00 4.55
373 374 0.241481 GCTCGCTATAGGGTCTTCGG 59.759 60.000 15.71 3.49 0.00 4.30
374 375 1.240256 AGCTCGCTATAGGGTCTTCG 58.760 55.000 15.71 3.08 0.00 3.79
375 376 3.379057 GGATAGCTCGCTATAGGGTCTTC 59.621 52.174 15.71 12.56 39.15 2.87
376 377 3.010808 AGGATAGCTCGCTATAGGGTCTT 59.989 47.826 15.71 5.97 39.15 3.01
377 378 2.578940 AGGATAGCTCGCTATAGGGTCT 59.421 50.000 15.71 15.13 39.15 3.85
378 379 2.946990 GAGGATAGCTCGCTATAGGGTC 59.053 54.545 15.71 9.49 39.15 4.46
379 380 2.578940 AGAGGATAGCTCGCTATAGGGT 59.421 50.000 15.71 1.02 39.15 4.34
380 381 3.211045 GAGAGGATAGCTCGCTATAGGG 58.789 54.545 11.13 10.48 39.15 3.53
381 382 3.118038 AGGAGAGGATAGCTCGCTATAGG 60.118 52.174 11.13 0.00 39.15 2.57
382 383 4.150897 AGGAGAGGATAGCTCGCTATAG 57.849 50.000 11.13 0.00 39.15 1.31
383 384 4.263550 ACAAGGAGAGGATAGCTCGCTATA 60.264 45.833 11.13 0.00 39.15 1.31
384 385 3.088532 CAAGGAGAGGATAGCTCGCTAT 58.911 50.000 10.98 10.98 41.48 2.97
385 386 2.158593 ACAAGGAGAGGATAGCTCGCTA 60.159 50.000 0.53 0.53 33.19 4.26
386 387 1.327303 CAAGGAGAGGATAGCTCGCT 58.673 55.000 0.00 0.00 33.19 4.93
387 388 1.000717 GACAAGGAGAGGATAGCTCGC 60.001 57.143 0.00 0.00 33.19 5.03
388 389 1.265635 CGACAAGGAGAGGATAGCTCG 59.734 57.143 0.00 0.00 33.19 5.03
389 390 1.611491 CCGACAAGGAGAGGATAGCTC 59.389 57.143 0.00 0.00 45.00 4.09
390 391 1.698506 CCGACAAGGAGAGGATAGCT 58.301 55.000 0.00 0.00 45.00 3.32
391 392 0.676736 CCCGACAAGGAGAGGATAGC 59.323 60.000 0.00 0.00 45.00 2.97
392 393 0.676736 GCCCGACAAGGAGAGGATAG 59.323 60.000 0.00 0.00 45.00 2.08
393 394 0.032515 TGCCCGACAAGGAGAGGATA 60.033 55.000 0.00 0.00 45.00 2.59
394 395 1.306141 TGCCCGACAAGGAGAGGAT 60.306 57.895 0.00 0.00 45.00 3.24
395 396 1.984570 CTGCCCGACAAGGAGAGGA 60.985 63.158 0.00 0.00 45.00 3.71
396 397 1.984570 TCTGCCCGACAAGGAGAGG 60.985 63.158 0.00 0.00 45.00 3.69
397 398 1.216710 GTCTGCCCGACAAGGAGAG 59.783 63.158 0.00 0.00 45.00 3.20
398 399 2.636412 CGTCTGCCCGACAAGGAGA 61.636 63.158 4.43 0.00 45.00 3.71
399 400 2.125912 CGTCTGCCCGACAAGGAG 60.126 66.667 4.43 0.00 45.00 3.69
400 401 3.691342 CCGTCTGCCCGACAAGGA 61.691 66.667 4.43 0.00 45.00 3.36
402 403 2.298158 ATAGCCGTCTGCCCGACAAG 62.298 60.000 4.43 0.00 42.98 3.16
403 404 1.895020 AATAGCCGTCTGCCCGACAA 61.895 55.000 4.43 0.00 42.98 3.18
404 405 1.895020 AAATAGCCGTCTGCCCGACA 61.895 55.000 4.43 0.00 42.98 4.35
405 406 1.153429 AAATAGCCGTCTGCCCGAC 60.153 57.895 0.00 0.00 42.71 4.79
406 407 1.153449 CAAATAGCCGTCTGCCCGA 60.153 57.895 0.00 0.00 42.71 5.14
407 408 0.179094 TACAAATAGCCGTCTGCCCG 60.179 55.000 0.00 0.00 42.71 6.13
408 409 1.134491 ACTACAAATAGCCGTCTGCCC 60.134 52.381 0.00 0.00 42.71 5.36
409 410 1.933853 CACTACAAATAGCCGTCTGCC 59.066 52.381 0.00 0.00 42.71 4.85
410 411 1.933853 CCACTACAAATAGCCGTCTGC 59.066 52.381 0.00 0.00 41.71 4.26
411 412 1.933853 GCCACTACAAATAGCCGTCTG 59.066 52.381 0.00 0.00 30.75 3.51
412 413 1.134491 GGCCACTACAAATAGCCGTCT 60.134 52.381 0.00 0.00 33.18 4.18
413 414 1.296727 GGCCACTACAAATAGCCGTC 58.703 55.000 0.00 0.00 33.18 4.79
414 415 0.616371 TGGCCACTACAAATAGCCGT 59.384 50.000 0.00 0.00 46.92 5.68
415 416 1.603802 CATGGCCACTACAAATAGCCG 59.396 52.381 8.16 0.00 46.92 5.52
416 417 1.956477 CCATGGCCACTACAAATAGCC 59.044 52.381 8.16 0.00 44.13 3.93
417 418 2.618709 GACCATGGCCACTACAAATAGC 59.381 50.000 8.16 0.00 30.75 2.97
418 419 2.872245 CGACCATGGCCACTACAAATAG 59.128 50.000 8.16 0.00 34.25 1.73
419 420 2.420827 CCGACCATGGCCACTACAAATA 60.421 50.000 8.16 0.00 0.00 1.40
420 421 1.681780 CCGACCATGGCCACTACAAAT 60.682 52.381 8.16 0.00 0.00 2.32
421 422 0.322098 CCGACCATGGCCACTACAAA 60.322 55.000 8.16 0.00 0.00 2.83
422 423 1.298340 CCGACCATGGCCACTACAA 59.702 57.895 8.16 0.00 0.00 2.41
423 424 1.485294 AACCGACCATGGCCACTACA 61.485 55.000 8.16 0.00 0.00 2.74
424 425 1.024579 CAACCGACCATGGCCACTAC 61.025 60.000 8.16 0.00 0.00 2.73
425 426 1.298340 CAACCGACCATGGCCACTA 59.702 57.895 8.16 0.00 0.00 2.74
426 427 2.034066 CAACCGACCATGGCCACT 59.966 61.111 8.16 0.00 0.00 4.00
427 428 1.862602 GAACAACCGACCATGGCCAC 61.863 60.000 8.16 2.68 0.00 5.01
428 429 1.602323 GAACAACCGACCATGGCCA 60.602 57.895 13.04 8.56 0.00 5.36
429 430 2.686816 CGAACAACCGACCATGGCC 61.687 63.158 13.04 0.00 0.00 5.36
430 431 1.908066 GACGAACAACCGACCATGGC 61.908 60.000 13.04 3.65 0.00 4.40
431 432 1.296056 GGACGAACAACCGACCATGG 61.296 60.000 11.19 11.19 42.35 3.66
432 433 2.159181 GGACGAACAACCGACCATG 58.841 57.895 0.00 0.00 42.35 3.66
433 434 4.687464 GGACGAACAACCGACCAT 57.313 55.556 0.00 0.00 42.35 3.55
439 440 1.495951 GATGCACGGACGAACAACC 59.504 57.895 0.00 0.00 0.00 3.77
440 441 1.129809 CGATGCACGGACGAACAAC 59.870 57.895 0.00 0.00 38.46 3.32
441 442 3.544728 CGATGCACGGACGAACAA 58.455 55.556 0.00 0.00 38.46 2.83
451 452 1.326852 CTGCAGATCAAGACGATGCAC 59.673 52.381 8.42 0.00 33.17 4.57
452 453 1.066645 ACTGCAGATCAAGACGATGCA 60.067 47.619 23.35 3.84 33.17 3.96
453 454 1.592081 GACTGCAGATCAAGACGATGC 59.408 52.381 23.35 0.00 33.17 3.91
454 455 1.851053 CGACTGCAGATCAAGACGATG 59.149 52.381 23.35 0.00 33.17 3.84
455 456 1.800655 GCGACTGCAGATCAAGACGAT 60.801 52.381 23.35 0.00 42.15 3.73
456 457 0.456824 GCGACTGCAGATCAAGACGA 60.457 55.000 23.35 0.00 42.15 4.20
457 458 1.994467 GCGACTGCAGATCAAGACG 59.006 57.895 23.35 13.81 42.15 4.18
467 468 3.983317 CCAGAAGGGATTGCGACTGCA 62.983 57.143 0.00 0.00 45.49 4.41
468 469 1.372087 CCAGAAGGGATTGCGACTGC 61.372 60.000 0.00 0.00 40.01 4.40
469 470 0.250234 TCCAGAAGGGATTGCGACTG 59.750 55.000 0.00 0.00 42.15 3.51
470 471 2.683916 TCCAGAAGGGATTGCGACT 58.316 52.632 0.00 0.00 42.15 4.18
478 479 0.417437 TCCATGGAGTCCAGAAGGGA 59.583 55.000 18.69 17.39 45.89 4.20
479 480 1.142465 CATCCATGGAGTCCAGAAGGG 59.858 57.143 21.33 15.45 36.75 3.95
480 481 1.842562 ACATCCATGGAGTCCAGAAGG 59.157 52.381 21.33 18.16 36.75 3.46
481 482 3.641434 AACATCCATGGAGTCCAGAAG 57.359 47.619 21.33 9.80 36.75 2.85
482 483 4.080919 CACTAACATCCATGGAGTCCAGAA 60.081 45.833 21.33 5.70 36.75 3.02
483 484 3.452264 CACTAACATCCATGGAGTCCAGA 59.548 47.826 21.33 10.80 36.75 3.86
484 485 3.198635 ACACTAACATCCATGGAGTCCAG 59.801 47.826 21.33 16.00 36.75 3.86
485 486 3.181329 ACACTAACATCCATGGAGTCCA 58.819 45.455 21.33 15.88 38.19 4.02
486 487 3.914426 ACACTAACATCCATGGAGTCC 57.086 47.619 21.33 0.73 0.00 3.85
487 488 7.865706 AAAATACACTAACATCCATGGAGTC 57.134 36.000 21.33 0.00 0.00 3.36
572 573 7.416964 TGCTAATTATACCAGGCACATTTTT 57.583 32.000 0.00 0.00 0.00 1.94
573 574 7.416964 TTGCTAATTATACCAGGCACATTTT 57.583 32.000 0.00 0.00 0.00 1.82
574 575 7.416964 TTTGCTAATTATACCAGGCACATTT 57.583 32.000 0.00 0.00 0.00 2.32
575 576 7.416964 TTTTGCTAATTATACCAGGCACATT 57.583 32.000 0.00 0.00 0.00 2.71
576 577 7.416964 TTTTTGCTAATTATACCAGGCACAT 57.583 32.000 0.00 0.00 0.00 3.21
577 578 6.627065 GCTTTTTGCTAATTATACCAGGCACA 60.627 38.462 0.00 0.00 38.95 4.57
578 579 5.748630 GCTTTTTGCTAATTATACCAGGCAC 59.251 40.000 0.00 0.00 38.95 5.01
579 580 5.163457 GGCTTTTTGCTAATTATACCAGGCA 60.163 40.000 0.00 0.00 42.39 4.75
580 581 5.163457 TGGCTTTTTGCTAATTATACCAGGC 60.163 40.000 0.00 0.00 42.39 4.85
581 582 6.463995 TGGCTTTTTGCTAATTATACCAGG 57.536 37.500 0.00 0.00 42.39 4.45
582 583 6.476706 GCTTGGCTTTTTGCTAATTATACCAG 59.523 38.462 0.00 0.00 41.27 4.00
583 584 6.071108 TGCTTGGCTTTTTGCTAATTATACCA 60.071 34.615 0.00 0.00 41.27 3.25
584 585 6.337356 TGCTTGGCTTTTTGCTAATTATACC 58.663 36.000 0.00 0.00 41.27 2.73
585 586 7.257722 TCTGCTTGGCTTTTTGCTAATTATAC 58.742 34.615 0.00 0.00 41.27 1.47
586 587 7.403312 TCTGCTTGGCTTTTTGCTAATTATA 57.597 32.000 0.00 0.00 41.27 0.98
587 588 6.284891 TCTGCTTGGCTTTTTGCTAATTAT 57.715 33.333 0.00 0.00 41.27 1.28
588 589 5.720371 TCTGCTTGGCTTTTTGCTAATTA 57.280 34.783 0.00 0.00 41.27 1.40
589 590 4.605640 TCTGCTTGGCTTTTTGCTAATT 57.394 36.364 0.00 0.00 41.27 1.40
590 591 4.605640 TTCTGCTTGGCTTTTTGCTAAT 57.394 36.364 0.00 0.00 41.27 1.73
591 592 4.399004 TTTCTGCTTGGCTTTTTGCTAA 57.601 36.364 0.00 0.00 42.39 3.09
592 593 4.309099 CATTTCTGCTTGGCTTTTTGCTA 58.691 39.130 0.00 0.00 42.39 3.49
593 594 2.985957 TTTCTGCTTGGCTTTTTGCT 57.014 40.000 0.00 0.00 42.39 3.91
594 595 2.350102 GCATTTCTGCTTGGCTTTTTGC 60.350 45.455 0.00 0.00 45.32 3.68
595 596 3.531262 GCATTTCTGCTTGGCTTTTTG 57.469 42.857 0.00 0.00 45.32 2.44
607 608 6.392354 ACTTCCAATTACATGTGCATTTCTG 58.608 36.000 9.11 0.00 0.00 3.02
608 609 6.594788 ACTTCCAATTACATGTGCATTTCT 57.405 33.333 9.11 0.00 0.00 2.52
609 610 7.360269 CCAAACTTCCAATTACATGTGCATTTC 60.360 37.037 9.11 0.00 0.00 2.17
610 611 6.427547 CCAAACTTCCAATTACATGTGCATTT 59.572 34.615 9.11 0.00 0.00 2.32
611 612 5.933463 CCAAACTTCCAATTACATGTGCATT 59.067 36.000 9.11 3.91 0.00 3.56
612 613 5.245751 TCCAAACTTCCAATTACATGTGCAT 59.754 36.000 9.11 0.00 0.00 3.96
613 614 4.586421 TCCAAACTTCCAATTACATGTGCA 59.414 37.500 9.11 0.00 0.00 4.57
614 615 5.132897 TCCAAACTTCCAATTACATGTGC 57.867 39.130 9.11 0.00 0.00 4.57
615 616 6.511416 TGTTCCAAACTTCCAATTACATGTG 58.489 36.000 9.11 0.00 0.00 3.21
616 617 6.549364 TCTGTTCCAAACTTCCAATTACATGT 59.451 34.615 2.69 2.69 0.00 3.21
617 618 6.980593 TCTGTTCCAAACTTCCAATTACATG 58.019 36.000 0.00 0.00 0.00 3.21
618 619 6.209391 CCTCTGTTCCAAACTTCCAATTACAT 59.791 38.462 0.00 0.00 0.00 2.29
619 620 5.534654 CCTCTGTTCCAAACTTCCAATTACA 59.465 40.000 0.00 0.00 0.00 2.41
620 621 5.564848 GCCTCTGTTCCAAACTTCCAATTAC 60.565 44.000 0.00 0.00 0.00 1.89
621 622 4.522789 GCCTCTGTTCCAAACTTCCAATTA 59.477 41.667 0.00 0.00 0.00 1.40
622 623 3.321968 GCCTCTGTTCCAAACTTCCAATT 59.678 43.478 0.00 0.00 0.00 2.32
623 624 2.893489 GCCTCTGTTCCAAACTTCCAAT 59.107 45.455 0.00 0.00 0.00 3.16
624 625 2.306847 GCCTCTGTTCCAAACTTCCAA 58.693 47.619 0.00 0.00 0.00 3.53
625 626 1.214175 TGCCTCTGTTCCAAACTTCCA 59.786 47.619 0.00 0.00 0.00 3.53
626 627 1.882623 CTGCCTCTGTTCCAAACTTCC 59.117 52.381 0.00 0.00 0.00 3.46
627 628 1.268079 GCTGCCTCTGTTCCAAACTTC 59.732 52.381 0.00 0.00 0.00 3.01
628 629 1.322442 GCTGCCTCTGTTCCAAACTT 58.678 50.000 0.00 0.00 0.00 2.66
629 630 0.538287 GGCTGCCTCTGTTCCAAACT 60.538 55.000 12.43 0.00 0.00 2.66
630 631 1.856265 CGGCTGCCTCTGTTCCAAAC 61.856 60.000 17.92 0.00 0.00 2.93
631 632 1.600636 CGGCTGCCTCTGTTCCAAA 60.601 57.895 17.92 0.00 0.00 3.28
632 633 2.032528 CGGCTGCCTCTGTTCCAA 59.967 61.111 17.92 0.00 0.00 3.53
633 634 2.922503 TCGGCTGCCTCTGTTCCA 60.923 61.111 17.92 0.00 0.00 3.53
634 635 2.435059 GTCGGCTGCCTCTGTTCC 60.435 66.667 17.92 0.00 0.00 3.62
635 636 2.811317 CGTCGGCTGCCTCTGTTC 60.811 66.667 17.92 0.00 0.00 3.18
648 649 4.111016 TCCGTGTAGCCTGCGTCG 62.111 66.667 0.00 0.00 0.00 5.12
649 650 2.488087 AAGTCCGTGTAGCCTGCGTC 62.488 60.000 0.00 0.00 0.00 5.19
650 651 2.571216 AAGTCCGTGTAGCCTGCGT 61.571 57.895 0.00 0.00 0.00 5.24
651 652 2.094659 CAAGTCCGTGTAGCCTGCG 61.095 63.158 0.00 0.00 0.00 5.18
652 653 2.391389 GCAAGTCCGTGTAGCCTGC 61.391 63.158 0.00 0.00 0.00 4.85
653 654 0.391661 ATGCAAGTCCGTGTAGCCTG 60.392 55.000 0.00 0.00 0.00 4.85
654 655 1.191535 TATGCAAGTCCGTGTAGCCT 58.808 50.000 0.00 0.00 0.00 4.58
655 656 1.867233 CATATGCAAGTCCGTGTAGCC 59.133 52.381 0.00 0.00 0.00 3.93
656 657 1.867233 CCATATGCAAGTCCGTGTAGC 59.133 52.381 0.00 0.00 0.00 3.58
657 658 3.452755 TCCATATGCAAGTCCGTGTAG 57.547 47.619 0.00 0.00 0.00 2.74
658 659 5.069914 ACTTATCCATATGCAAGTCCGTGTA 59.930 40.000 0.00 0.00 0.00 2.90
659 660 4.141711 ACTTATCCATATGCAAGTCCGTGT 60.142 41.667 0.00 0.00 0.00 4.49
660 661 4.380531 ACTTATCCATATGCAAGTCCGTG 58.619 43.478 0.00 0.00 0.00 4.94
661 662 4.689612 ACTTATCCATATGCAAGTCCGT 57.310 40.909 0.00 0.00 0.00 4.69
662 663 5.056480 TGAACTTATCCATATGCAAGTCCG 58.944 41.667 12.99 0.00 31.06 4.79
663 664 6.150140 GGATGAACTTATCCATATGCAAGTCC 59.850 42.308 12.99 8.38 44.90 3.85
664 665 6.128445 CGGATGAACTTATCCATATGCAAGTC 60.128 42.308 12.99 9.10 45.66 3.01
665 666 5.702670 CGGATGAACTTATCCATATGCAAGT 59.297 40.000 0.00 3.73 45.66 3.16
666 667 5.934043 TCGGATGAACTTATCCATATGCAAG 59.066 40.000 0.00 3.12 45.66 4.01
667 668 5.863965 TCGGATGAACTTATCCATATGCAA 58.136 37.500 0.00 0.00 45.66 4.08
668 669 5.482163 TCGGATGAACTTATCCATATGCA 57.518 39.130 0.00 0.00 45.66 3.96
669 670 6.108687 TGATCGGATGAACTTATCCATATGC 58.891 40.000 0.00 0.00 45.66 3.14
670 671 7.065085 GGTTGATCGGATGAACTTATCCATATG 59.935 40.741 17.67 0.00 45.66 1.78
671 672 7.106239 GGTTGATCGGATGAACTTATCCATAT 58.894 38.462 17.67 0.00 45.66 1.78
672 673 6.464222 GGTTGATCGGATGAACTTATCCATA 58.536 40.000 17.67 0.00 45.66 2.74
696 701 3.004106 GCTTGAATGGAAGGAATGGATCG 59.996 47.826 0.00 0.00 0.00 3.69
704 709 2.957402 ACTGTGCTTGAATGGAAGGA 57.043 45.000 0.00 0.00 0.00 3.36
705 710 2.421424 GCTACTGTGCTTGAATGGAAGG 59.579 50.000 0.00 0.00 0.00 3.46
710 716 4.227512 TGTTTGCTACTGTGCTTGAATG 57.772 40.909 0.00 0.00 0.00 2.67
730 736 4.211374 GTGTTGGTTGTGAGTAGCTAGTTG 59.789 45.833 1.78 0.00 0.00 3.16
747 753 2.833533 CGTGCCACTGGTGTGTTGG 61.834 63.158 0.00 0.00 42.34 3.77
772 778 1.195442 TATTCCCACACTGGTGCGGA 61.195 55.000 9.10 7.52 43.88 5.54
872 884 2.352421 GCTCGTATTTATAGCCGCTCCA 60.352 50.000 0.00 0.00 0.00 3.86
1683 1721 4.232188 AGGATTCTCAGTTCATGCATGT 57.768 40.909 25.43 4.41 0.00 3.21
1698 1736 5.411669 CACCAAACACTACCTGTTAGGATTC 59.588 44.000 1.13 0.00 42.70 2.52
1710 1748 1.068333 CCTGCATGCACCAAACACTAC 60.068 52.381 18.46 0.00 0.00 2.73
1934 1975 3.627577 GGTCAGTACCATGCCATGTTTAG 59.372 47.826 3.63 0.00 45.98 1.85
2493 2548 2.832838 TCCACCTATCTCTTGCTCCAA 58.167 47.619 0.00 0.00 0.00 3.53
2533 2588 0.453793 CTCAGAGCACTAGACCACCG 59.546 60.000 0.00 0.00 0.00 4.94
2626 2681 4.218852 AGCTAGAGACGTTACAAAGCTCTT 59.781 41.667 6.07 0.00 37.20 2.85
2839 2898 7.620880 ACTATGATTCCTTTTGTGCACTACTA 58.379 34.615 19.41 0.24 0.00 1.82
2840 2899 6.476378 ACTATGATTCCTTTTGTGCACTACT 58.524 36.000 19.41 0.00 0.00 2.57
2841 2900 6.595716 AGACTATGATTCCTTTTGTGCACTAC 59.404 38.462 19.41 0.00 0.00 2.73
2940 2999 7.807977 TGCAGAAAGAGATATGGTTATTTCC 57.192 36.000 0.00 0.00 0.00 3.13
3135 3195 3.973135 CGGAATCACTAGCACATACGTAC 59.027 47.826 0.00 0.00 0.00 3.67
3136 3196 3.878699 TCGGAATCACTAGCACATACGTA 59.121 43.478 0.00 0.00 0.00 3.57
3137 3197 2.686405 TCGGAATCACTAGCACATACGT 59.314 45.455 0.00 0.00 0.00 3.57
3138 3198 3.003378 TCTCGGAATCACTAGCACATACG 59.997 47.826 0.00 0.00 0.00 3.06
3253 3313 2.899256 CCATGCTTTTCTTTTCTGGGGA 59.101 45.455 0.00 0.00 0.00 4.81
3451 3511 1.997874 GTGGTGGAGGAGGAGGCAT 60.998 63.158 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.