Multiple sequence alignment - TraesCS1B01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G266500 chr1B 100.000 5715 0 0 1 5715 468514584 468508870 0.000000e+00 10554.0
1 TraesCS1B01G266500 chr1B 83.838 297 48 0 3731 4027 9413659 9413955 3.370000e-72 283.0
2 TraesCS1B01G266500 chr1D 94.199 4792 185 49 307 5073 347413095 347408372 0.000000e+00 7223.0
3 TraesCS1B01G266500 chr1D 83.838 297 48 0 3731 4027 7128142 7128438 3.370000e-72 283.0
4 TraesCS1B01G266500 chr1D 96.000 50 2 0 260 309 347413326 347413277 1.320000e-11 82.4
5 TraesCS1B01G266500 chr1A 93.430 3044 140 34 363 3366 448038129 448035106 0.000000e+00 4458.0
6 TraesCS1B01G266500 chr1A 92.923 1526 64 24 3402 4920 448035018 448033530 0.000000e+00 2180.0
7 TraesCS1B01G266500 chr6D 89.818 658 49 2 5075 5715 402895287 402894631 0.000000e+00 828.0
8 TraesCS1B01G266500 chr2A 88.298 658 53 7 5075 5715 707113035 707112385 0.000000e+00 767.0
9 TraesCS1B01G266500 chr7D 86.690 571 75 1 5075 5645 49473486 49472917 2.910000e-177 632.0
10 TraesCS1B01G266500 chr7D 86.501 563 72 2 5075 5634 49522524 49521963 2.930000e-172 616.0
11 TraesCS1B01G266500 chr5B 85.613 563 76 5 5084 5645 619190132 619189574 2.290000e-163 586.0
12 TraesCS1B01G266500 chr5B 85.435 563 77 5 5084 5645 619136961 619136403 1.070000e-161 580.0
13 TraesCS1B01G266500 chr5B 85.231 562 79 4 5084 5645 619070183 619069626 4.970000e-160 575.0
14 TraesCS1B01G266500 chr5B 84.547 563 83 4 5084 5645 619106115 619105556 6.470000e-154 555.0
15 TraesCS1B01G266500 chr6A 82.549 659 91 10 5075 5713 435339197 435338543 5.000000e-155 558.0
16 TraesCS1B01G266500 chr4D 75.191 524 101 21 5212 5712 439181171 439180654 2.680000e-53 220.0
17 TraesCS1B01G266500 chr7A 92.727 110 8 0 621 730 735479812 735479703 5.930000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G266500 chr1B 468508870 468514584 5714 True 10554.0 10554 100.0000 1 5715 1 chr1B.!!$R1 5714
1 TraesCS1B01G266500 chr1D 347408372 347413326 4954 True 3652.7 7223 95.0995 260 5073 2 chr1D.!!$R1 4813
2 TraesCS1B01G266500 chr1A 448033530 448038129 4599 True 3319.0 4458 93.1765 363 4920 2 chr1A.!!$R1 4557
3 TraesCS1B01G266500 chr6D 402894631 402895287 656 True 828.0 828 89.8180 5075 5715 1 chr6D.!!$R1 640
4 TraesCS1B01G266500 chr2A 707112385 707113035 650 True 767.0 767 88.2980 5075 5715 1 chr2A.!!$R1 640
5 TraesCS1B01G266500 chr7D 49472917 49473486 569 True 632.0 632 86.6900 5075 5645 1 chr7D.!!$R1 570
6 TraesCS1B01G266500 chr7D 49521963 49522524 561 True 616.0 616 86.5010 5075 5634 1 chr7D.!!$R2 559
7 TraesCS1B01G266500 chr5B 619189574 619190132 558 True 586.0 586 85.6130 5084 5645 1 chr5B.!!$R4 561
8 TraesCS1B01G266500 chr5B 619136403 619136961 558 True 580.0 580 85.4350 5084 5645 1 chr5B.!!$R3 561
9 TraesCS1B01G266500 chr5B 619069626 619070183 557 True 575.0 575 85.2310 5084 5645 1 chr5B.!!$R1 561
10 TraesCS1B01G266500 chr5B 619105556 619106115 559 True 555.0 555 84.5470 5084 5645 1 chr5B.!!$R2 561
11 TraesCS1B01G266500 chr6A 435338543 435339197 654 True 558.0 558 82.5490 5075 5713 1 chr6A.!!$R1 638
12 TraesCS1B01G266500 chr4D 439180654 439181171 517 True 220.0 220 75.1910 5212 5712 1 chr4D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.037326 TTCAGACCACGTGGCATCTC 60.037 55.0 34.26 23.13 39.32 2.75 F
208 209 0.107993 CAGACCACGTGGCATCTCAT 60.108 55.0 34.26 13.33 39.32 2.90 F
631 823 0.108585 AGAAAAAGCGAGCACCCAGA 59.891 50.0 0.00 0.00 0.00 3.86 F
2133 2350 0.377203 TCGACTCGGACATGATCGTG 59.623 55.0 13.53 13.53 34.47 4.35 F
2994 3229 0.034767 AAACTAGGCGGCCCTAAACC 60.035 55.0 17.02 0.00 43.04 3.27 F
3072 3310 0.111266 CCGCGTGTTTTGTCTTCTCG 60.111 55.0 4.92 0.00 0.00 4.04 F
3745 4039 0.394625 AGAGAGGCTACGACCAGGTC 60.395 60.0 9.92 9.92 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1297 0.247736 CTGACTAACCTTGAGCGGCT 59.752 55.000 0.00 0.0 0.00 5.52 R
1706 1922 1.153449 GGCACGGTCCATCAATCGA 60.153 57.895 0.00 0.0 0.00 3.59 R
2285 2502 0.321919 TGCAGTGAAGGAGGTGCATC 60.322 55.000 0.00 0.0 40.93 3.91 R
3072 3310 0.033504 TTGCTTCGTCACTCCCTGAC 59.966 55.000 0.00 0.0 45.38 3.51 R
4082 4376 0.110509 TCAGTCGTCAGTCGCGTTAC 60.111 55.000 5.77 0.0 39.67 2.50 R
4354 4648 0.176910 TGAACTGAGCCACGTGTGAA 59.823 50.000 15.65 0.0 0.00 3.18 R
5307 5608 0.455815 GGCCATCGGACAATCCAAAC 59.544 55.000 0.00 0.0 35.91 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.614092 TCCACAGGAATCTCAAATGAGC 58.386 45.455 5.53 0.00 41.80 4.26
30 31 3.265221 TCCACAGGAATCTCAAATGAGCT 59.735 43.478 5.53 0.00 41.80 4.09
31 32 3.626670 CCACAGGAATCTCAAATGAGCTC 59.373 47.826 6.82 6.82 41.80 4.09
32 33 4.259356 CACAGGAATCTCAAATGAGCTCA 58.741 43.478 20.79 20.79 41.80 4.26
33 34 4.698780 CACAGGAATCTCAAATGAGCTCAA 59.301 41.667 22.50 2.71 41.80 3.02
34 35 5.182570 CACAGGAATCTCAAATGAGCTCAAA 59.817 40.000 22.50 5.91 41.80 2.69
35 36 5.182760 ACAGGAATCTCAAATGAGCTCAAAC 59.817 40.000 22.50 2.05 41.80 2.93
36 37 4.704057 AGGAATCTCAAATGAGCTCAAACC 59.296 41.667 22.50 10.72 41.80 3.27
37 38 4.704057 GGAATCTCAAATGAGCTCAAACCT 59.296 41.667 22.50 0.00 41.80 3.50
38 39 5.163673 GGAATCTCAAATGAGCTCAAACCTC 60.164 44.000 22.50 9.11 41.80 3.85
39 40 4.356405 TCTCAAATGAGCTCAAACCTCA 57.644 40.909 22.50 0.78 42.91 3.86
46 47 5.796424 ATGAGCTCAAACCTCATTTTGTT 57.204 34.783 22.50 0.00 45.21 2.83
47 48 5.596836 TGAGCTCAAACCTCATTTTGTTT 57.403 34.783 15.67 0.00 37.66 2.83
48 49 5.976458 TGAGCTCAAACCTCATTTTGTTTT 58.024 33.333 15.67 0.00 37.66 2.43
49 50 6.405538 TGAGCTCAAACCTCATTTTGTTTTT 58.594 32.000 15.67 0.00 37.66 1.94
50 51 6.534793 TGAGCTCAAACCTCATTTTGTTTTTC 59.465 34.615 15.67 0.00 37.66 2.29
51 52 5.817296 AGCTCAAACCTCATTTTGTTTTTCC 59.183 36.000 0.00 0.00 37.66 3.13
52 53 5.817296 GCTCAAACCTCATTTTGTTTTTCCT 59.183 36.000 0.00 0.00 37.66 3.36
53 54 6.316140 GCTCAAACCTCATTTTGTTTTTCCTT 59.684 34.615 0.00 0.00 37.66 3.36
54 55 7.148255 GCTCAAACCTCATTTTGTTTTTCCTTT 60.148 33.333 0.00 0.00 37.66 3.11
55 56 8.038492 TCAAACCTCATTTTGTTTTTCCTTTG 57.962 30.769 0.00 0.00 37.66 2.77
56 57 7.880195 TCAAACCTCATTTTGTTTTTCCTTTGA 59.120 29.630 0.00 0.00 37.66 2.69
57 58 7.848223 AACCTCATTTTGTTTTTCCTTTGAG 57.152 32.000 0.00 0.00 0.00 3.02
58 59 7.181569 ACCTCATTTTGTTTTTCCTTTGAGA 57.818 32.000 0.00 0.00 32.96 3.27
59 60 7.619965 ACCTCATTTTGTTTTTCCTTTGAGAA 58.380 30.769 0.00 0.00 32.96 2.87
60 61 7.765819 ACCTCATTTTGTTTTTCCTTTGAGAAG 59.234 33.333 0.00 0.00 32.96 2.85
61 62 7.765819 CCTCATTTTGTTTTTCCTTTGAGAAGT 59.234 33.333 0.00 0.00 32.96 3.01
62 63 8.702163 TCATTTTGTTTTTCCTTTGAGAAGTC 57.298 30.769 0.00 0.00 0.00 3.01
63 64 7.763985 TCATTTTGTTTTTCCTTTGAGAAGTCC 59.236 33.333 0.00 0.00 0.00 3.85
64 65 6.597832 TTTGTTTTTCCTTTGAGAAGTCCA 57.402 33.333 0.00 0.00 0.00 4.02
65 66 5.835113 TGTTTTTCCTTTGAGAAGTCCAG 57.165 39.130 0.00 0.00 0.00 3.86
66 67 5.261216 TGTTTTTCCTTTGAGAAGTCCAGT 58.739 37.500 0.00 0.00 0.00 4.00
67 68 5.125417 TGTTTTTCCTTTGAGAAGTCCAGTG 59.875 40.000 0.00 0.00 0.00 3.66
68 69 2.550830 TCCTTTGAGAAGTCCAGTGC 57.449 50.000 0.00 0.00 0.00 4.40
69 70 1.768275 TCCTTTGAGAAGTCCAGTGCA 59.232 47.619 0.00 0.00 0.00 4.57
70 71 2.373169 TCCTTTGAGAAGTCCAGTGCAT 59.627 45.455 0.00 0.00 0.00 3.96
71 72 3.152341 CCTTTGAGAAGTCCAGTGCATT 58.848 45.455 0.00 0.00 0.00 3.56
72 73 3.571401 CCTTTGAGAAGTCCAGTGCATTT 59.429 43.478 0.00 0.00 0.00 2.32
73 74 4.320788 CCTTTGAGAAGTCCAGTGCATTTC 60.321 45.833 0.00 0.00 0.00 2.17
74 75 2.783135 TGAGAAGTCCAGTGCATTTCC 58.217 47.619 0.00 0.00 0.00 3.13
75 76 2.106338 TGAGAAGTCCAGTGCATTTCCA 59.894 45.455 0.00 0.00 0.00 3.53
76 77 2.485814 GAGAAGTCCAGTGCATTTCCAC 59.514 50.000 0.00 0.00 35.98 4.02
77 78 2.107204 AGAAGTCCAGTGCATTTCCACT 59.893 45.455 0.00 0.00 46.47 4.00
78 79 2.191128 AGTCCAGTGCATTTCCACTC 57.809 50.000 0.00 0.00 43.85 3.51
79 80 1.701847 AGTCCAGTGCATTTCCACTCT 59.298 47.619 0.00 0.00 43.85 3.24
80 81 2.906389 AGTCCAGTGCATTTCCACTCTA 59.094 45.455 0.00 0.00 43.85 2.43
81 82 3.003480 GTCCAGTGCATTTCCACTCTAC 58.997 50.000 0.00 0.00 43.85 2.59
82 83 2.027192 TCCAGTGCATTTCCACTCTACC 60.027 50.000 0.00 0.00 43.85 3.18
83 84 2.026822 CCAGTGCATTTCCACTCTACCT 60.027 50.000 0.00 0.00 43.85 3.08
84 85 3.265791 CAGTGCATTTCCACTCTACCTC 58.734 50.000 0.00 0.00 43.85 3.85
85 86 3.055530 CAGTGCATTTCCACTCTACCTCT 60.056 47.826 0.00 0.00 43.85 3.69
86 87 3.196685 AGTGCATTTCCACTCTACCTCTC 59.803 47.826 0.00 0.00 42.10 3.20
87 88 3.196685 GTGCATTTCCACTCTACCTCTCT 59.803 47.826 0.00 0.00 33.02 3.10
88 89 3.449018 TGCATTTCCACTCTACCTCTCTC 59.551 47.826 0.00 0.00 0.00 3.20
89 90 3.490078 GCATTTCCACTCTACCTCTCTCG 60.490 52.174 0.00 0.00 0.00 4.04
90 91 3.715638 TTTCCACTCTACCTCTCTCGA 57.284 47.619 0.00 0.00 0.00 4.04
91 92 2.695127 TCCACTCTACCTCTCTCGAC 57.305 55.000 0.00 0.00 0.00 4.20
92 93 2.189676 TCCACTCTACCTCTCTCGACT 58.810 52.381 0.00 0.00 0.00 4.18
93 94 2.168936 TCCACTCTACCTCTCTCGACTC 59.831 54.545 0.00 0.00 0.00 3.36
94 95 2.169769 CCACTCTACCTCTCTCGACTCT 59.830 54.545 0.00 0.00 0.00 3.24
95 96 3.454375 CACTCTACCTCTCTCGACTCTC 58.546 54.545 0.00 0.00 0.00 3.20
96 97 3.132289 CACTCTACCTCTCTCGACTCTCT 59.868 52.174 0.00 0.00 0.00 3.10
97 98 3.773119 ACTCTACCTCTCTCGACTCTCTT 59.227 47.826 0.00 0.00 0.00 2.85
98 99 4.957954 ACTCTACCTCTCTCGACTCTCTTA 59.042 45.833 0.00 0.00 0.00 2.10
99 100 5.601313 ACTCTACCTCTCTCGACTCTCTTAT 59.399 44.000 0.00 0.00 0.00 1.73
100 101 5.849510 TCTACCTCTCTCGACTCTCTTATG 58.150 45.833 0.00 0.00 0.00 1.90
101 102 4.764050 ACCTCTCTCGACTCTCTTATGA 57.236 45.455 0.00 0.00 0.00 2.15
102 103 5.105567 ACCTCTCTCGACTCTCTTATGAA 57.894 43.478 0.00 0.00 0.00 2.57
103 104 5.690865 ACCTCTCTCGACTCTCTTATGAAT 58.309 41.667 0.00 0.00 0.00 2.57
104 105 5.763204 ACCTCTCTCGACTCTCTTATGAATC 59.237 44.000 0.00 0.00 0.00 2.52
105 106 5.181245 CCTCTCTCGACTCTCTTATGAATCC 59.819 48.000 0.00 0.00 0.00 3.01
106 107 5.935945 TCTCTCGACTCTCTTATGAATCCT 58.064 41.667 0.00 0.00 0.00 3.24
107 108 5.995282 TCTCTCGACTCTCTTATGAATCCTC 59.005 44.000 0.00 0.00 0.00 3.71
108 109 5.067273 TCTCGACTCTCTTATGAATCCTCC 58.933 45.833 0.00 0.00 0.00 4.30
109 110 4.793201 TCGACTCTCTTATGAATCCTCCA 58.207 43.478 0.00 0.00 0.00 3.86
110 111 5.389520 TCGACTCTCTTATGAATCCTCCAT 58.610 41.667 0.00 0.00 0.00 3.41
111 112 5.835819 TCGACTCTCTTATGAATCCTCCATT 59.164 40.000 0.00 0.00 0.00 3.16
112 113 6.325028 TCGACTCTCTTATGAATCCTCCATTT 59.675 38.462 0.00 0.00 0.00 2.32
113 114 6.989169 CGACTCTCTTATGAATCCTCCATTTT 59.011 38.462 0.00 0.00 0.00 1.82
114 115 7.497249 CGACTCTCTTATGAATCCTCCATTTTT 59.503 37.037 0.00 0.00 0.00 1.94
133 134 2.354109 TTTTGTGCTTTTCGTGTGCA 57.646 40.000 0.00 0.00 0.00 4.57
134 135 2.575694 TTTGTGCTTTTCGTGTGCAT 57.424 40.000 0.00 0.00 39.00 3.96
135 136 2.118228 TTGTGCTTTTCGTGTGCATC 57.882 45.000 0.00 0.00 39.00 3.91
136 137 1.020437 TGTGCTTTTCGTGTGCATCA 58.980 45.000 0.00 0.00 39.00 3.07
137 138 1.268488 TGTGCTTTTCGTGTGCATCAC 60.268 47.619 8.75 8.75 43.03 3.06
138 139 0.310543 TGCTTTTCGTGTGCATCACC 59.689 50.000 11.99 1.06 43.51 4.02
139 140 0.387239 GCTTTTCGTGTGCATCACCC 60.387 55.000 11.99 0.00 43.51 4.61
140 141 0.950836 CTTTTCGTGTGCATCACCCA 59.049 50.000 11.99 0.00 43.51 4.51
141 142 1.336440 CTTTTCGTGTGCATCACCCAA 59.664 47.619 11.99 4.83 43.51 4.12
142 143 1.393603 TTTCGTGTGCATCACCCAAA 58.606 45.000 11.99 9.18 43.51 3.28
143 144 0.950836 TTCGTGTGCATCACCCAAAG 59.049 50.000 11.99 1.28 43.51 2.77
144 145 0.107643 TCGTGTGCATCACCCAAAGA 59.892 50.000 11.99 3.15 43.51 2.52
145 146 1.167851 CGTGTGCATCACCCAAAGAT 58.832 50.000 11.99 0.00 43.51 2.40
146 147 2.027653 TCGTGTGCATCACCCAAAGATA 60.028 45.455 11.99 0.00 43.51 1.98
147 148 2.945008 CGTGTGCATCACCCAAAGATAT 59.055 45.455 11.99 0.00 43.51 1.63
148 149 4.126437 CGTGTGCATCACCCAAAGATATA 58.874 43.478 11.99 0.00 43.51 0.86
149 150 4.756642 CGTGTGCATCACCCAAAGATATAT 59.243 41.667 11.99 0.00 43.51 0.86
150 151 5.106948 CGTGTGCATCACCCAAAGATATATC 60.107 44.000 4.42 4.42 43.51 1.63
151 152 6.000219 GTGTGCATCACCCAAAGATATATCT 59.000 40.000 9.57 9.57 40.84 1.98
152 153 6.488006 GTGTGCATCACCCAAAGATATATCTT 59.512 38.462 20.20 20.20 43.30 2.40
153 154 7.661437 GTGTGCATCACCCAAAGATATATCTTA 59.339 37.037 24.81 11.22 42.05 2.10
154 155 7.661437 TGTGCATCACCCAAAGATATATCTTAC 59.339 37.037 24.81 16.15 38.65 2.34
155 156 7.661437 GTGCATCACCCAAAGATATATCTTACA 59.339 37.037 24.81 11.21 45.83 2.41
156 157 8.217111 TGCATCACCCAAAGATATATCTTACAA 58.783 33.333 24.81 10.54 45.83 2.41
157 158 9.066892 GCATCACCCAAAGATATATCTTACAAA 57.933 33.333 24.81 11.41 45.83 2.83
194 195 9.927668 TTTTGAAATCCTATTGAAATTCAGACC 57.072 29.630 0.00 0.00 35.54 3.85
195 196 8.648698 TTGAAATCCTATTGAAATTCAGACCA 57.351 30.769 0.00 0.00 35.54 4.02
196 197 8.055279 TGAAATCCTATTGAAATTCAGACCAC 57.945 34.615 0.00 0.00 32.37 4.16
197 198 6.683974 AATCCTATTGAAATTCAGACCACG 57.316 37.500 0.00 0.00 0.00 4.94
198 199 5.160607 TCCTATTGAAATTCAGACCACGT 57.839 39.130 0.00 0.00 0.00 4.49
199 200 4.935205 TCCTATTGAAATTCAGACCACGTG 59.065 41.667 9.08 9.08 0.00 4.49
200 201 4.094887 CCTATTGAAATTCAGACCACGTGG 59.905 45.833 32.83 32.83 42.17 4.94
201 202 1.234821 TGAAATTCAGACCACGTGGC 58.765 50.000 34.26 25.13 39.32 5.01
202 203 1.234821 GAAATTCAGACCACGTGGCA 58.765 50.000 34.26 13.19 39.32 4.92
203 204 1.812571 GAAATTCAGACCACGTGGCAT 59.187 47.619 34.26 20.22 39.32 4.40
204 205 1.453155 AATTCAGACCACGTGGCATC 58.547 50.000 34.26 24.24 39.32 3.91
205 206 0.615331 ATTCAGACCACGTGGCATCT 59.385 50.000 34.26 26.08 39.32 2.90
206 207 0.037326 TTCAGACCACGTGGCATCTC 60.037 55.000 34.26 23.13 39.32 2.75
207 208 1.184970 TCAGACCACGTGGCATCTCA 61.185 55.000 34.26 14.82 39.32 3.27
208 209 0.107993 CAGACCACGTGGCATCTCAT 60.108 55.000 34.26 13.33 39.32 2.90
209 210 0.615331 AGACCACGTGGCATCTCATT 59.385 50.000 34.26 12.49 39.32 2.57
210 211 1.003580 AGACCACGTGGCATCTCATTT 59.996 47.619 34.26 11.67 39.32 2.32
211 212 1.812571 GACCACGTGGCATCTCATTTT 59.187 47.619 34.26 10.84 39.32 1.82
212 213 2.228822 GACCACGTGGCATCTCATTTTT 59.771 45.455 34.26 10.26 39.32 1.94
213 214 2.030007 ACCACGTGGCATCTCATTTTTG 60.030 45.455 34.26 5.81 39.32 2.44
214 215 2.030007 CCACGTGGCATCTCATTTTTGT 60.030 45.455 24.02 0.00 0.00 2.83
215 216 2.981805 CACGTGGCATCTCATTTTTGTG 59.018 45.455 7.95 0.00 0.00 3.33
216 217 2.622942 ACGTGGCATCTCATTTTTGTGT 59.377 40.909 0.00 0.00 0.00 3.72
217 218 3.068024 ACGTGGCATCTCATTTTTGTGTT 59.932 39.130 0.00 0.00 0.00 3.32
218 219 4.050553 CGTGGCATCTCATTTTTGTGTTT 58.949 39.130 0.00 0.00 0.00 2.83
219 220 4.507388 CGTGGCATCTCATTTTTGTGTTTT 59.493 37.500 0.00 0.00 0.00 2.43
220 221 5.006552 CGTGGCATCTCATTTTTGTGTTTTT 59.993 36.000 0.00 0.00 0.00 1.94
238 239 4.993029 TTTTTGTTCCCACGTTCTGAAT 57.007 36.364 0.00 0.00 0.00 2.57
239 240 4.993029 TTTTGTTCCCACGTTCTGAATT 57.007 36.364 0.00 0.00 0.00 2.17
240 241 4.993029 TTTGTTCCCACGTTCTGAATTT 57.007 36.364 0.00 0.00 0.00 1.82
241 242 4.993029 TTGTTCCCACGTTCTGAATTTT 57.007 36.364 0.00 0.00 0.00 1.82
242 243 4.561735 TGTTCCCACGTTCTGAATTTTC 57.438 40.909 0.00 0.00 0.00 2.29
243 244 3.316868 TGTTCCCACGTTCTGAATTTTCC 59.683 43.478 0.00 0.00 0.00 3.13
244 245 3.502123 TCCCACGTTCTGAATTTTCCT 57.498 42.857 0.00 0.00 0.00 3.36
245 246 3.408634 TCCCACGTTCTGAATTTTCCTC 58.591 45.455 0.00 0.00 0.00 3.71
246 247 3.146066 CCCACGTTCTGAATTTTCCTCA 58.854 45.455 0.00 0.00 0.00 3.86
247 248 3.568007 CCCACGTTCTGAATTTTCCTCAA 59.432 43.478 0.00 0.00 0.00 3.02
248 249 4.218417 CCCACGTTCTGAATTTTCCTCAAT 59.782 41.667 0.00 0.00 0.00 2.57
249 250 5.278957 CCCACGTTCTGAATTTTCCTCAATT 60.279 40.000 0.00 0.00 0.00 2.32
250 251 5.858581 CCACGTTCTGAATTTTCCTCAATTC 59.141 40.000 0.00 0.11 41.68 2.17
251 252 6.437928 CACGTTCTGAATTTTCCTCAATTCA 58.562 36.000 8.24 8.24 46.37 2.57
258 259 7.951530 TGAATTTTCCTCAATTCAAAGAAGC 57.048 32.000 6.41 0.00 45.85 3.86
294 295 9.807921 TTCAGTACAAAGGAATCCTTAGAAAAT 57.192 29.630 15.83 0.00 43.92 1.82
295 296 9.231297 TCAGTACAAAGGAATCCTTAGAAAATG 57.769 33.333 15.83 10.97 43.92 2.32
304 489 8.440771 AGGAATCCTTAGAAAATGTATTCCGAT 58.559 33.333 0.00 0.00 43.57 4.18
305 490 9.720769 GGAATCCTTAGAAAATGTATTCCGATA 57.279 33.333 0.00 0.00 33.67 2.92
317 502 5.380900 TGTATTCCGATATGAATTGGCCAA 58.619 37.500 23.00 23.00 36.66 4.52
320 505 2.557924 TCCGATATGAATTGGCCAATGC 59.442 45.455 31.28 29.31 36.66 3.56
321 506 8.023133 TATTCCGATATGAATTGGCCAATGCC 62.023 42.308 31.28 24.17 44.96 4.40
332 517 2.113860 GCCAATGCCACACTCTCTAA 57.886 50.000 0.00 0.00 0.00 2.10
333 518 1.740025 GCCAATGCCACACTCTCTAAC 59.260 52.381 0.00 0.00 0.00 2.34
397 585 4.097418 ACACTATAAGGAGGTGAAGCACT 58.903 43.478 0.00 0.00 34.40 4.40
423 611 5.294734 AGTTGTGAAAAGCCCATCATTTT 57.705 34.783 0.00 0.00 0.00 1.82
459 647 9.804758 TTCTTCTCTATTTTCTTCTCCGTAATC 57.195 33.333 0.00 0.00 0.00 1.75
506 697 6.978674 TCCCATTATCTTCTCGTGATACTT 57.021 37.500 0.00 0.00 0.00 2.24
582 773 0.478507 CCCTCCCTCTCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
628 820 0.241213 GGAAGAAAAAGCGAGCACCC 59.759 55.000 0.00 0.00 0.00 4.61
629 821 0.951558 GAAGAAAAAGCGAGCACCCA 59.048 50.000 0.00 0.00 0.00 4.51
630 822 0.954452 AAGAAAAAGCGAGCACCCAG 59.046 50.000 0.00 0.00 0.00 4.45
631 823 0.108585 AGAAAAAGCGAGCACCCAGA 59.891 50.000 0.00 0.00 0.00 3.86
632 824 0.519077 GAAAAAGCGAGCACCCAGAG 59.481 55.000 0.00 0.00 0.00 3.35
633 825 0.890996 AAAAAGCGAGCACCCAGAGG 60.891 55.000 0.00 0.00 40.04 3.69
742 940 1.899437 GCCATCCGACCTCACCTCAA 61.899 60.000 0.00 0.00 0.00 3.02
899 1102 1.153667 CCACTTGCTCTCGGCTCTC 60.154 63.158 0.00 0.00 42.39 3.20
934 1137 3.157087 ACGCTCATTTTTGGATTCACCT 58.843 40.909 0.00 0.00 39.86 4.00
986 1189 0.449388 GAGCCGTTGCAATCTTGAGG 59.551 55.000 0.59 1.17 41.13 3.86
993 1196 3.269178 GTTGCAATCTTGAGGAGGAGAG 58.731 50.000 0.59 0.00 0.00 3.20
994 1197 1.836166 TGCAATCTTGAGGAGGAGAGG 59.164 52.381 0.00 0.00 0.00 3.69
995 1198 2.114616 GCAATCTTGAGGAGGAGAGGA 58.885 52.381 0.00 0.00 0.00 3.71
1094 1297 4.069232 CGTCGAGCTCCAGGCCAA 62.069 66.667 8.47 0.00 43.05 4.52
1142 1348 1.063972 CTCTGCTCTTCTCTCGCCG 59.936 63.158 0.00 0.00 0.00 6.46
1506 1716 3.775654 CACCTCGGGTCCAGCCTC 61.776 72.222 0.00 0.00 37.43 4.70
1616 1831 3.747193 AGCTCGACAAATTAACAATGCG 58.253 40.909 0.00 0.00 0.00 4.73
1623 1838 3.243704 ACAAATTAACAATGCGCACCTGT 60.244 39.130 14.90 17.29 0.00 4.00
1638 1853 1.360551 CTGTCCTACCCAGCGATCG 59.639 63.158 11.69 11.69 0.00 3.69
1725 1942 1.449423 CGATTGATGGACCGTGCCA 60.449 57.895 0.00 0.00 43.23 4.92
1906 2123 2.660802 CGCCCTCGGTAACCAACT 59.339 61.111 0.00 0.00 0.00 3.16
1917 2134 3.618997 CGGTAACCAACTACCTCTGCATT 60.619 47.826 0.00 0.00 39.46 3.56
1931 2148 5.419788 ACCTCTGCATTTGATTATGAAGCAA 59.580 36.000 0.00 0.00 32.12 3.91
1932 2149 6.097839 ACCTCTGCATTTGATTATGAAGCAAT 59.902 34.615 0.00 0.00 36.57 3.56
1949 2166 5.227238 AGCAATTTAATCTGCTCGTGAAG 57.773 39.130 6.08 0.00 45.79 3.02
1956 2173 3.883830 ATCTGCTCGTGAAGAATCTGT 57.116 42.857 0.00 0.00 30.34 3.41
2133 2350 0.377203 TCGACTCGGACATGATCGTG 59.623 55.000 13.53 13.53 34.47 4.35
2297 2515 0.617413 CCTCACAGATGCACCTCCTT 59.383 55.000 0.00 0.00 0.00 3.36
2428 2655 0.722469 GTCGTGTGCGCATGTTTCAG 60.722 55.000 15.91 1.25 38.14 3.02
2438 2665 3.735746 GCGCATGTTTCAGCTAAAAACTT 59.264 39.130 19.13 12.97 37.48 2.66
2439 2666 4.915085 GCGCATGTTTCAGCTAAAAACTTA 59.085 37.500 19.13 6.11 37.48 2.24
2440 2667 5.164187 GCGCATGTTTCAGCTAAAAACTTAC 60.164 40.000 19.13 10.57 37.48 2.34
2441 2668 6.142817 CGCATGTTTCAGCTAAAAACTTACT 58.857 36.000 19.13 5.05 37.48 2.24
2442 2669 6.636850 CGCATGTTTCAGCTAAAAACTTACTT 59.363 34.615 19.13 3.43 37.48 2.24
2443 2670 7.149128 CGCATGTTTCAGCTAAAAACTTACTTC 60.149 37.037 19.13 7.01 37.48 3.01
2444 2671 7.149128 GCATGTTTCAGCTAAAAACTTACTTCG 60.149 37.037 19.13 7.22 37.48 3.79
2445 2672 6.721321 TGTTTCAGCTAAAAACTTACTTCGG 58.279 36.000 19.13 0.00 37.48 4.30
2446 2673 5.934935 TTCAGCTAAAAACTTACTTCGGG 57.065 39.130 0.00 0.00 0.00 5.14
2452 2679 6.489022 AGCTAAAAACTTACTTCGGGACAAAT 59.511 34.615 0.00 0.00 0.00 2.32
2482 2709 5.009911 TGAAACAGTGAATGAAATGACAGGG 59.990 40.000 0.00 0.00 0.00 4.45
2497 2724 3.009363 TGACAGGGAAATCAGCATCAGAA 59.991 43.478 0.00 0.00 0.00 3.02
2499 2726 2.353889 CAGGGAAATCAGCATCAGAACG 59.646 50.000 0.00 0.00 0.00 3.95
2503 2730 3.436704 GGAAATCAGCATCAGAACGACAA 59.563 43.478 0.00 0.00 0.00 3.18
2508 2737 6.741992 ATCAGCATCAGAACGACAATTTTA 57.258 33.333 0.00 0.00 0.00 1.52
2518 2747 9.165014 TCAGAACGACAATTTTAAAAATCGAAG 57.835 29.630 26.28 17.01 33.88 3.79
2560 2789 1.214589 GAGCACGCCTCCGAGTTTA 59.785 57.895 0.00 0.00 38.29 2.01
2632 2863 2.387445 TGCAACGCACGCATACTCC 61.387 57.895 0.00 0.00 33.55 3.85
2684 2915 4.413520 AGCTATGTATCCACCAGAAATGGT 59.586 41.667 0.00 0.00 44.23 3.55
2730 2961 1.234615 TGCTGCCCACTAGCGTTTTC 61.235 55.000 0.00 0.00 44.01 2.29
2739 2970 3.120991 CCACTAGCGTTTTCGTCTTCAAG 60.121 47.826 0.00 0.00 46.03 3.02
2740 2971 2.475487 ACTAGCGTTTTCGTCTTCAAGC 59.525 45.455 0.00 0.00 46.03 4.01
2783 3014 4.058817 GGGAGTATCTTAACAAGCGATGG 58.941 47.826 0.00 0.00 33.73 3.51
2821 3052 3.112075 CAAGTGACGTGGCGCGAT 61.112 61.111 28.85 11.46 44.77 4.58
2886 3117 2.611292 CTCCTGGATTTGAGTCGAATGC 59.389 50.000 15.80 15.80 0.00 3.56
2896 3127 6.715344 TTTGAGTCGAATGCGTAGTTTATT 57.285 33.333 0.00 0.00 38.98 1.40
2949 3180 7.013274 GCTCAAATTGATAATGTTACTGGGCTA 59.987 37.037 0.00 0.00 0.00 3.93
2955 3186 2.938956 ATGTTACTGGGCTATCTGGC 57.061 50.000 0.00 0.00 40.96 4.85
2965 3196 2.645730 GCTATCTGGCCTGATCGTAG 57.354 55.000 26.63 19.46 0.00 3.51
2992 3227 1.907936 TGTAAACTAGGCGGCCCTAAA 59.092 47.619 17.02 0.00 43.04 1.85
2993 3228 2.283298 GTAAACTAGGCGGCCCTAAAC 58.717 52.381 17.02 3.23 43.04 2.01
2994 3229 0.034767 AAACTAGGCGGCCCTAAACC 60.035 55.000 17.02 0.00 43.04 3.27
2996 3231 1.146263 CTAGGCGGCCCTAAACCAG 59.854 63.158 17.02 0.00 43.04 4.00
2997 3232 2.325393 CTAGGCGGCCCTAAACCAGG 62.325 65.000 17.02 0.00 43.04 4.45
3027 3265 4.083862 GGCCGAGCGGAAGGAACT 62.084 66.667 13.94 0.00 37.50 3.01
3068 3306 1.096416 TTTCCCGCGTGTTTTGTCTT 58.904 45.000 4.92 0.00 0.00 3.01
3072 3310 0.111266 CCGCGTGTTTTGTCTTCTCG 60.111 55.000 4.92 0.00 0.00 4.04
3223 3461 2.314647 CGTCGACGGCCACAACATT 61.315 57.895 29.70 0.00 35.37 2.71
3244 3482 1.482593 GACGACCTCATCACCATCCTT 59.517 52.381 0.00 0.00 0.00 3.36
3360 3598 3.230134 ACAAGTACCACGGTAGGTAACA 58.770 45.455 9.90 0.00 45.24 2.41
3361 3599 3.834231 ACAAGTACCACGGTAGGTAACAT 59.166 43.478 9.90 0.47 45.24 2.71
3362 3600 5.016173 ACAAGTACCACGGTAGGTAACATA 58.984 41.667 9.90 0.00 45.24 2.29
3363 3601 5.658190 ACAAGTACCACGGTAGGTAACATAT 59.342 40.000 9.90 0.00 45.24 1.78
3559 3853 1.375908 GGACAGCAAGATCGTGGCA 60.376 57.895 10.74 0.00 0.00 4.92
3643 3937 3.109612 CTTCGACGTCGGGATCGCT 62.110 63.158 35.05 0.00 38.24 4.93
3646 3940 2.488355 GACGTCGGGATCGCTGAA 59.512 61.111 8.28 0.00 36.13 3.02
3745 4039 0.394625 AGAGAGGCTACGACCAGGTC 60.395 60.000 9.92 9.92 0.00 3.85
3865 4159 2.817834 GCGTTCATGGCGTGCCTA 60.818 61.111 12.84 0.00 36.94 3.93
4041 4335 0.456312 GAGGTGCGTTTCGATCTCGT 60.456 55.000 0.00 0.00 40.80 4.18
4052 4346 5.060569 CGTTTCGATCTCGTGTTCATAACTT 59.939 40.000 0.00 0.00 40.80 2.66
4059 4353 4.092771 TCGTGTTCATAACTTCGAGAGG 57.907 45.455 0.00 0.00 35.19 3.69
4069 4363 6.712998 TCATAACTTCGAGAGGAGATTAGAGG 59.287 42.308 0.00 0.00 39.93 3.69
4082 4376 0.450583 TTAGAGGCTGTGTACGCGAG 59.549 55.000 15.93 0.00 0.00 5.03
4084 4378 0.675837 AGAGGCTGTGTACGCGAGTA 60.676 55.000 15.93 0.00 46.88 2.59
4112 4406 2.930682 CTGACGACTGACTGATCTACGA 59.069 50.000 0.00 0.00 0.00 3.43
4393 4687 2.123982 GCCCTGGATGGCCTTCTG 60.124 66.667 17.48 10.85 46.11 3.02
4417 4711 4.317488 ACGGCAAACTTAAGGTAATCGAA 58.683 39.130 7.53 0.00 0.00 3.71
4418 4712 4.939439 ACGGCAAACTTAAGGTAATCGAAT 59.061 37.500 7.53 0.00 0.00 3.34
4419 4713 5.064325 ACGGCAAACTTAAGGTAATCGAATC 59.936 40.000 7.53 0.00 0.00 2.52
4420 4714 5.499047 GGCAAACTTAAGGTAATCGAATCG 58.501 41.667 7.53 0.00 0.00 3.34
4421 4715 5.292589 GGCAAACTTAAGGTAATCGAATCGA 59.707 40.000 8.12 8.12 41.13 3.59
4445 4739 9.003112 CGATTGATCAAACTAACATTGTCAATC 57.997 33.333 13.09 20.05 42.49 2.67
4446 4740 9.844790 GATTGATCAAACTAACATTGTCAATCA 57.155 29.630 13.09 10.02 43.51 2.57
4450 4744 8.627208 ATCAAACTAACATTGTCAATCAGTCT 57.373 30.769 0.00 0.00 0.00 3.24
4452 4746 5.869753 ACTAACATTGTCAATCAGTCTGC 57.130 39.130 0.00 0.00 0.00 4.26
4453 4747 5.308014 ACTAACATTGTCAATCAGTCTGCA 58.692 37.500 0.00 0.00 0.00 4.41
4454 4748 4.494350 AACATTGTCAATCAGTCTGCAC 57.506 40.909 0.00 0.00 0.00 4.57
4455 4749 2.816087 ACATTGTCAATCAGTCTGCACC 59.184 45.455 0.00 0.00 0.00 5.01
4456 4750 1.896220 TTGTCAATCAGTCTGCACCC 58.104 50.000 0.00 0.00 0.00 4.61
4457 4751 0.320683 TGTCAATCAGTCTGCACCCG 60.321 55.000 0.00 0.00 0.00 5.28
4459 4753 0.037326 TCAATCAGTCTGCACCCGAC 60.037 55.000 0.00 0.00 0.00 4.79
4460 4754 1.021390 CAATCAGTCTGCACCCGACC 61.021 60.000 1.23 0.00 31.83 4.79
4461 4755 2.507110 AATCAGTCTGCACCCGACCG 62.507 60.000 1.23 0.00 31.83 4.79
4463 4757 2.915659 AGTCTGCACCCGACCGAA 60.916 61.111 1.23 0.00 31.83 4.30
4464 4758 2.264794 GTCTGCACCCGACCGAAT 59.735 61.111 0.00 0.00 0.00 3.34
4465 4759 0.968901 AGTCTGCACCCGACCGAATA 60.969 55.000 1.23 0.00 31.83 1.75
4467 4761 0.681887 TCTGCACCCGACCGAATAGA 60.682 55.000 0.00 0.00 0.00 1.98
4469 4763 0.609151 TGCACCCGACCGAATAGAAA 59.391 50.000 0.00 0.00 0.00 2.52
4471 4765 2.285977 GCACCCGACCGAATAGAAAAT 58.714 47.619 0.00 0.00 0.00 1.82
4472 4766 2.287103 GCACCCGACCGAATAGAAAATC 59.713 50.000 0.00 0.00 0.00 2.17
4474 4768 3.555956 CACCCGACCGAATAGAAAATCAG 59.444 47.826 0.00 0.00 0.00 2.90
4475 4769 3.449737 ACCCGACCGAATAGAAAATCAGA 59.550 43.478 0.00 0.00 0.00 3.27
4477 4771 4.873827 CCCGACCGAATAGAAAATCAGAAA 59.126 41.667 0.00 0.00 0.00 2.52
4478 4772 5.527582 CCCGACCGAATAGAAAATCAGAAAT 59.472 40.000 0.00 0.00 0.00 2.17
4479 4773 6.292919 CCCGACCGAATAGAAAATCAGAAATC 60.293 42.308 0.00 0.00 0.00 2.17
4480 4774 6.257849 CCGACCGAATAGAAAATCAGAAATCA 59.742 38.462 0.00 0.00 0.00 2.57
4481 4775 7.340699 CGACCGAATAGAAAATCAGAAATCAG 58.659 38.462 0.00 0.00 0.00 2.90
4482 4776 7.020914 ACCGAATAGAAAATCAGAAATCAGC 57.979 36.000 0.00 0.00 0.00 4.26
4483 4777 6.599244 ACCGAATAGAAAATCAGAAATCAGCA 59.401 34.615 0.00 0.00 0.00 4.41
4484 4778 6.909357 CCGAATAGAAAATCAGAAATCAGCAC 59.091 38.462 0.00 0.00 0.00 4.40
4487 4781 9.630098 GAATAGAAAATCAGAAATCAGCACAAA 57.370 29.630 0.00 0.00 0.00 2.83
4490 4784 8.976986 AGAAAATCAGAAATCAGCACAAATAC 57.023 30.769 0.00 0.00 0.00 1.89
4491 4785 8.579006 AGAAAATCAGAAATCAGCACAAATACA 58.421 29.630 0.00 0.00 0.00 2.29
4492 4786 9.362539 GAAAATCAGAAATCAGCACAAATACAT 57.637 29.630 0.00 0.00 0.00 2.29
4493 4787 9.715121 AAAATCAGAAATCAGCACAAATACATT 57.285 25.926 0.00 0.00 0.00 2.71
4494 4788 8.697846 AATCAGAAATCAGCACAAATACATTG 57.302 30.769 0.00 0.00 44.95 2.82
4495 4789 6.094719 TCAGAAATCAGCACAAATACATTGC 58.905 36.000 0.00 0.00 43.13 3.56
4497 4791 6.252869 CAGAAATCAGCACAAATACATTGCTC 59.747 38.462 0.00 0.00 44.87 4.26
4498 4792 5.909621 AATCAGCACAAATACATTGCTCT 57.090 34.783 0.00 0.00 44.87 4.09
4499 4793 7.337689 AGAAATCAGCACAAATACATTGCTCTA 59.662 33.333 0.00 0.00 44.87 2.43
4500 4794 7.578310 AATCAGCACAAATACATTGCTCTAT 57.422 32.000 0.00 0.00 44.87 1.98
4501 4795 6.367686 TCAGCACAAATACATTGCTCTATG 57.632 37.500 0.00 0.00 44.87 2.23
4505 4799 6.544931 AGCACAAATACATTGCTCTATGACAT 59.455 34.615 0.00 0.00 43.14 3.06
4508 4802 7.646526 CACAAATACATTGCTCTATGACATTGG 59.353 37.037 0.00 0.00 43.13 3.16
4511 4805 4.847198 ACATTGCTCTATGACATTGGTGA 58.153 39.130 0.00 0.00 0.00 4.02
4513 4807 3.979101 TGCTCTATGACATTGGTGACA 57.021 42.857 0.00 0.00 39.83 3.58
4516 4810 6.178607 TGCTCTATGACATTGGTGACATAT 57.821 37.500 0.00 0.00 40.43 1.78
4523 4817 6.293004 TGACATTGGTGACATATGTGACTA 57.707 37.500 22.25 15.46 40.05 2.59
4528 4822 4.450976 TGGTGACATATGTGACTAATGGC 58.549 43.478 22.25 7.60 32.65 4.40
4538 4832 5.957842 TGTGACTAATGGCGAATTTTTCT 57.042 34.783 0.00 0.00 0.00 2.52
4618 4912 2.268920 GCCGATCAGCTGGTGGAA 59.731 61.111 15.13 0.00 0.00 3.53
4992 5289 3.300009 GAGTCGCTGTTGTTTGGAATTG 58.700 45.455 0.00 0.00 0.00 2.32
5008 5305 6.839124 TGGAATTGTGATGCTTTCTGTATT 57.161 33.333 0.00 0.00 0.00 1.89
5009 5306 7.936496 TGGAATTGTGATGCTTTCTGTATTA 57.064 32.000 0.00 0.00 0.00 0.98
5042 5340 2.673893 CGGGGCAAGCTTTGTATTTTCC 60.674 50.000 0.00 0.00 0.00 3.13
5101 5399 4.821805 ACGAATGGAGTTTTCACAGTGAAT 59.178 37.500 16.89 2.02 36.11 2.57
5116 5414 6.150976 TCACAGTGAATTCCATGTATTTGGAC 59.849 38.462 0.00 0.00 45.42 4.02
5182 5483 5.712152 AAGTCAAAGTGCCCTTAAGAATG 57.288 39.130 3.36 0.00 0.00 2.67
5250 5551 3.006247 ACAACTTGGCAAAACGCAATTT 58.994 36.364 0.00 0.00 45.17 1.82
5307 5608 7.041303 CCATGATGAATCTATCAAACACCTCTG 60.041 40.741 0.00 0.00 42.54 3.35
5309 5610 7.397221 TGATGAATCTATCAAACACCTCTGTT 58.603 34.615 0.00 0.00 42.54 3.16
5353 5655 7.792374 AGTTTTATGGCACTCAGTACATATG 57.208 36.000 0.00 0.00 0.00 1.78
5412 5714 2.570415 TTTGGGACGTGGCTAAATGA 57.430 45.000 0.00 0.00 0.00 2.57
5429 5731 7.417342 GGCTAAATGAAGTAGAGACAGAGACAT 60.417 40.741 0.00 0.00 0.00 3.06
5430 5732 7.434897 GCTAAATGAAGTAGAGACAGAGACATG 59.565 40.741 0.00 0.00 0.00 3.21
5435 5737 6.438741 TGAAGTAGAGACAGAGACATGGAAAT 59.561 38.462 0.00 0.00 0.00 2.17
5496 5798 2.253603 GAACTGCATGAACGATTTGGC 58.746 47.619 0.00 0.00 0.00 4.52
5523 5825 9.921637 TTTTAACAGGAAAACACATATCCATTC 57.078 29.630 0.00 0.00 35.62 2.67
5569 5872 4.400251 CACTGCTTTGATCCATATGTGGTT 59.600 41.667 8.51 0.00 46.16 3.67
5574 5877 5.242393 GCTTTGATCCATATGTGGTTGCTAT 59.758 40.000 8.51 0.00 46.16 2.97
5581 5884 5.104569 TCCATATGTGGTTGCTATTCACTCA 60.105 40.000 8.51 0.00 46.16 3.41
5584 5887 4.350368 TGTGGTTGCTATTCACTCAGAA 57.650 40.909 0.00 0.00 41.28 3.02
5604 5907 3.726557 AGGATGTCAAGGAGCATTTGA 57.273 42.857 0.00 0.00 32.44 2.69
5635 5938 2.953620 CTACCCGTTGGGAGATGGTAGT 60.954 54.545 9.30 0.00 46.90 2.73
5672 5992 8.529476 ACGGTCATATAATAGGATAGGTGTTTC 58.471 37.037 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.012374 GCTCATTTGAGATTCCTGTGGAA 58.988 43.478 11.70 1.24 44.74 3.53
8 9 3.265221 AGCTCATTTGAGATTCCTGTGGA 59.735 43.478 11.70 0.00 44.74 4.02
9 10 3.618351 AGCTCATTTGAGATTCCTGTGG 58.382 45.455 11.70 0.00 44.74 4.17
10 11 4.259356 TGAGCTCATTTGAGATTCCTGTG 58.741 43.478 13.74 0.00 41.40 3.66
11 12 4.564782 TGAGCTCATTTGAGATTCCTGT 57.435 40.909 13.74 0.00 41.40 4.00
12 13 5.392811 GGTTTGAGCTCATTTGAGATTCCTG 60.393 44.000 19.04 0.00 41.40 3.86
13 14 4.704057 GGTTTGAGCTCATTTGAGATTCCT 59.296 41.667 19.04 0.00 41.40 3.36
14 15 4.704057 AGGTTTGAGCTCATTTGAGATTCC 59.296 41.667 19.04 7.26 41.40 3.01
15 16 5.413833 TGAGGTTTGAGCTCATTTGAGATTC 59.586 40.000 19.04 8.17 46.53 2.52
16 17 5.319453 TGAGGTTTGAGCTCATTTGAGATT 58.681 37.500 19.04 0.00 46.53 2.40
17 18 4.914983 TGAGGTTTGAGCTCATTTGAGAT 58.085 39.130 19.04 4.77 46.53 2.75
18 19 4.356405 TGAGGTTTGAGCTCATTTGAGA 57.644 40.909 19.04 0.00 46.53 3.27
26 27 6.018751 GGAAAAACAAAATGAGGTTTGAGCTC 60.019 38.462 6.82 6.82 42.72 4.09
27 28 5.817296 GGAAAAACAAAATGAGGTTTGAGCT 59.183 36.000 4.76 0.00 40.29 4.09
28 29 5.817296 AGGAAAAACAAAATGAGGTTTGAGC 59.183 36.000 4.76 0.00 40.29 4.26
29 30 7.848223 AAGGAAAAACAAAATGAGGTTTGAG 57.152 32.000 4.76 0.00 40.29 3.02
30 31 7.880195 TCAAAGGAAAAACAAAATGAGGTTTGA 59.120 29.630 4.76 0.00 40.29 2.69
31 32 8.038492 TCAAAGGAAAAACAAAATGAGGTTTG 57.962 30.769 0.00 0.00 42.93 2.93
32 33 8.100164 TCTCAAAGGAAAAACAAAATGAGGTTT 58.900 29.630 0.00 0.00 38.78 3.27
33 34 7.619965 TCTCAAAGGAAAAACAAAATGAGGTT 58.380 30.769 0.00 0.00 35.08 3.50
34 35 7.181569 TCTCAAAGGAAAAACAAAATGAGGT 57.818 32.000 0.00 0.00 35.08 3.85
35 36 7.765819 ACTTCTCAAAGGAAAAACAAAATGAGG 59.234 33.333 0.00 0.00 36.78 3.86
36 37 8.707938 ACTTCTCAAAGGAAAAACAAAATGAG 57.292 30.769 0.00 0.00 36.78 2.90
37 38 7.763985 GGACTTCTCAAAGGAAAAACAAAATGA 59.236 33.333 0.00 0.00 36.78 2.57
38 39 7.548780 TGGACTTCTCAAAGGAAAAACAAAATG 59.451 33.333 0.00 0.00 36.78 2.32
39 40 7.619965 TGGACTTCTCAAAGGAAAAACAAAAT 58.380 30.769 0.00 0.00 36.78 1.82
40 41 6.998802 TGGACTTCTCAAAGGAAAAACAAAA 58.001 32.000 0.00 0.00 36.78 2.44
41 42 6.210584 ACTGGACTTCTCAAAGGAAAAACAAA 59.789 34.615 0.00 0.00 36.78 2.83
42 43 5.714806 ACTGGACTTCTCAAAGGAAAAACAA 59.285 36.000 0.00 0.00 36.78 2.83
43 44 5.125417 CACTGGACTTCTCAAAGGAAAAACA 59.875 40.000 0.00 0.00 36.78 2.83
44 45 5.582550 CACTGGACTTCTCAAAGGAAAAAC 58.417 41.667 0.00 0.00 36.78 2.43
45 46 4.097892 GCACTGGACTTCTCAAAGGAAAAA 59.902 41.667 0.00 0.00 36.78 1.94
46 47 3.632145 GCACTGGACTTCTCAAAGGAAAA 59.368 43.478 0.00 0.00 36.78 2.29
47 48 3.214328 GCACTGGACTTCTCAAAGGAAA 58.786 45.455 0.00 0.00 36.78 3.13
48 49 2.172505 TGCACTGGACTTCTCAAAGGAA 59.827 45.455 0.00 0.00 36.78 3.36
49 50 1.768275 TGCACTGGACTTCTCAAAGGA 59.232 47.619 0.00 0.00 36.78 3.36
50 51 2.260844 TGCACTGGACTTCTCAAAGG 57.739 50.000 0.00 0.00 36.78 3.11
51 52 4.320788 GGAAATGCACTGGACTTCTCAAAG 60.321 45.833 0.00 0.00 38.54 2.77
52 53 3.569701 GGAAATGCACTGGACTTCTCAAA 59.430 43.478 0.00 0.00 0.00 2.69
53 54 3.149196 GGAAATGCACTGGACTTCTCAA 58.851 45.455 0.00 0.00 0.00 3.02
54 55 2.106338 TGGAAATGCACTGGACTTCTCA 59.894 45.455 0.00 0.00 0.00 3.27
55 56 2.485814 GTGGAAATGCACTGGACTTCTC 59.514 50.000 0.00 0.00 0.00 2.87
56 57 2.107204 AGTGGAAATGCACTGGACTTCT 59.893 45.455 6.78 0.00 0.00 2.85
57 58 2.485814 GAGTGGAAATGCACTGGACTTC 59.514 50.000 12.50 0.00 0.00 3.01
58 59 2.107204 AGAGTGGAAATGCACTGGACTT 59.893 45.455 12.50 0.00 0.00 3.01
59 60 1.701847 AGAGTGGAAATGCACTGGACT 59.298 47.619 12.50 0.92 0.00 3.85
60 61 2.191128 AGAGTGGAAATGCACTGGAC 57.809 50.000 12.50 0.00 0.00 4.02
61 62 2.027192 GGTAGAGTGGAAATGCACTGGA 60.027 50.000 12.50 0.00 0.00 3.86
62 63 2.026822 AGGTAGAGTGGAAATGCACTGG 60.027 50.000 12.50 0.00 0.00 4.00
63 64 3.055530 AGAGGTAGAGTGGAAATGCACTG 60.056 47.826 12.50 0.00 0.00 3.66
64 65 3.177228 AGAGGTAGAGTGGAAATGCACT 58.823 45.455 7.33 7.33 0.00 4.40
65 66 3.196685 AGAGAGGTAGAGTGGAAATGCAC 59.803 47.826 0.00 0.00 0.00 4.57
66 67 3.445008 AGAGAGGTAGAGTGGAAATGCA 58.555 45.455 0.00 0.00 0.00 3.96
67 68 3.490078 CGAGAGAGGTAGAGTGGAAATGC 60.490 52.174 0.00 0.00 0.00 3.56
68 69 3.948473 TCGAGAGAGGTAGAGTGGAAATG 59.052 47.826 0.00 0.00 34.84 2.32
69 70 3.949113 GTCGAGAGAGGTAGAGTGGAAAT 59.051 47.826 0.00 0.00 43.49 2.17
70 71 3.009253 AGTCGAGAGAGGTAGAGTGGAAA 59.991 47.826 0.00 0.00 43.49 3.13
71 72 2.572556 AGTCGAGAGAGGTAGAGTGGAA 59.427 50.000 0.00 0.00 43.49 3.53
72 73 2.168936 GAGTCGAGAGAGGTAGAGTGGA 59.831 54.545 0.00 0.00 43.49 4.02
73 74 2.169769 AGAGTCGAGAGAGGTAGAGTGG 59.830 54.545 0.00 0.00 43.49 4.00
74 75 3.132289 AGAGAGTCGAGAGAGGTAGAGTG 59.868 52.174 0.00 0.00 43.49 3.51
75 76 3.371965 AGAGAGTCGAGAGAGGTAGAGT 58.628 50.000 0.00 0.00 43.49 3.24
76 77 4.402056 AAGAGAGTCGAGAGAGGTAGAG 57.598 50.000 0.00 0.00 43.49 2.43
77 78 5.599242 TCATAAGAGAGTCGAGAGAGGTAGA 59.401 44.000 0.00 0.00 43.49 2.59
78 79 5.849510 TCATAAGAGAGTCGAGAGAGGTAG 58.150 45.833 0.00 0.00 43.49 3.18
79 80 5.873146 TCATAAGAGAGTCGAGAGAGGTA 57.127 43.478 0.00 0.00 43.49 3.08
80 81 4.764050 TCATAAGAGAGTCGAGAGAGGT 57.236 45.455 0.00 0.00 43.49 3.85
81 82 5.181245 GGATTCATAAGAGAGTCGAGAGAGG 59.819 48.000 0.00 0.00 43.49 3.69
82 83 5.997746 AGGATTCATAAGAGAGTCGAGAGAG 59.002 44.000 0.00 0.00 43.49 3.20
83 84 5.935945 AGGATTCATAAGAGAGTCGAGAGA 58.064 41.667 0.00 0.00 38.16 3.10
84 85 5.181245 GGAGGATTCATAAGAGAGTCGAGAG 59.819 48.000 0.00 0.00 0.00 3.20
85 86 5.067273 GGAGGATTCATAAGAGAGTCGAGA 58.933 45.833 0.00 0.00 0.00 4.04
86 87 4.824537 TGGAGGATTCATAAGAGAGTCGAG 59.175 45.833 0.00 0.00 0.00 4.04
87 88 4.793201 TGGAGGATTCATAAGAGAGTCGA 58.207 43.478 0.00 0.00 0.00 4.20
88 89 5.720371 ATGGAGGATTCATAAGAGAGTCG 57.280 43.478 0.00 0.00 27.29 4.18
89 90 8.744568 AAAAATGGAGGATTCATAAGAGAGTC 57.255 34.615 0.00 0.00 28.18 3.36
113 114 2.677199 TGCACACGAAAAGCACAAAAA 58.323 38.095 0.00 0.00 32.55 1.94
114 115 2.354109 TGCACACGAAAAGCACAAAA 57.646 40.000 0.00 0.00 32.55 2.44
115 116 2.159324 TGATGCACACGAAAAGCACAAA 60.159 40.909 0.00 0.00 41.60 2.83
116 117 1.403323 TGATGCACACGAAAAGCACAA 59.597 42.857 0.00 0.00 41.60 3.33
117 118 1.020437 TGATGCACACGAAAAGCACA 58.980 45.000 0.00 0.00 41.60 4.57
118 119 1.398595 GTGATGCACACGAAAAGCAC 58.601 50.000 0.00 0.00 41.60 4.40
119 120 3.843632 GTGATGCACACGAAAAGCA 57.156 47.368 0.00 0.00 43.14 3.91
125 126 9.309690 AGATATATCTTTGGGTGATGCACACGA 62.310 40.741 9.57 0.00 41.27 4.35
126 127 7.237510 AGATATATCTTTGGGTGATGCACACG 61.238 42.308 9.57 0.00 41.27 4.49
127 128 6.000219 AGATATATCTTTGGGTGATGCACAC 59.000 40.000 9.57 9.96 40.35 3.82
128 129 6.191657 AGATATATCTTTGGGTGATGCACA 57.808 37.500 9.57 0.00 32.46 4.57
129 130 7.661437 TGTAAGATATATCTTTGGGTGATGCAC 59.339 37.037 28.39 17.83 44.28 4.57
130 131 7.744733 TGTAAGATATATCTTTGGGTGATGCA 58.255 34.615 28.39 12.04 44.28 3.96
131 132 8.621532 TTGTAAGATATATCTTTGGGTGATGC 57.378 34.615 28.39 9.85 44.28 3.91
168 169 9.927668 GGTCTGAATTTCAATAGGATTTCAAAA 57.072 29.630 0.01 0.00 31.52 2.44
169 170 9.087871 TGGTCTGAATTTCAATAGGATTTCAAA 57.912 29.630 0.01 0.00 31.52 2.69
170 171 8.522830 GTGGTCTGAATTTCAATAGGATTTCAA 58.477 33.333 0.01 0.00 31.52 2.69
171 172 7.148255 CGTGGTCTGAATTTCAATAGGATTTCA 60.148 37.037 0.01 0.00 31.24 2.69
172 173 7.148239 ACGTGGTCTGAATTTCAATAGGATTTC 60.148 37.037 0.01 0.00 0.00 2.17
173 174 6.659242 ACGTGGTCTGAATTTCAATAGGATTT 59.341 34.615 0.01 0.00 0.00 2.17
174 175 6.094048 CACGTGGTCTGAATTTCAATAGGATT 59.906 38.462 7.95 0.00 0.00 3.01
175 176 5.586243 CACGTGGTCTGAATTTCAATAGGAT 59.414 40.000 7.95 0.00 0.00 3.24
176 177 4.935205 CACGTGGTCTGAATTTCAATAGGA 59.065 41.667 7.95 0.00 0.00 2.94
177 178 4.094887 CCACGTGGTCTGAATTTCAATAGG 59.905 45.833 26.95 0.00 0.00 2.57
178 179 4.437390 GCCACGTGGTCTGAATTTCAATAG 60.437 45.833 33.92 4.34 37.57 1.73
179 180 3.438781 GCCACGTGGTCTGAATTTCAATA 59.561 43.478 33.92 0.00 37.57 1.90
180 181 2.228822 GCCACGTGGTCTGAATTTCAAT 59.771 45.455 33.92 0.00 37.57 2.57
181 182 1.606668 GCCACGTGGTCTGAATTTCAA 59.393 47.619 33.92 0.00 37.57 2.69
182 183 1.234821 GCCACGTGGTCTGAATTTCA 58.765 50.000 33.92 0.00 37.57 2.69
183 184 1.234821 TGCCACGTGGTCTGAATTTC 58.765 50.000 33.92 15.44 37.57 2.17
184 185 1.812571 GATGCCACGTGGTCTGAATTT 59.187 47.619 33.92 11.26 37.57 1.82
185 186 1.003580 AGATGCCACGTGGTCTGAATT 59.996 47.619 33.92 12.28 37.57 2.17
186 187 0.615331 AGATGCCACGTGGTCTGAAT 59.385 50.000 33.92 19.68 37.57 2.57
187 188 0.037326 GAGATGCCACGTGGTCTGAA 60.037 55.000 33.92 16.04 37.57 3.02
188 189 1.184970 TGAGATGCCACGTGGTCTGA 61.185 55.000 33.92 21.53 37.57 3.27
189 190 0.107993 ATGAGATGCCACGTGGTCTG 60.108 55.000 33.92 10.83 37.57 3.51
190 191 0.615331 AATGAGATGCCACGTGGTCT 59.385 50.000 33.92 28.50 37.57 3.85
191 192 1.453155 AAATGAGATGCCACGTGGTC 58.547 50.000 33.92 24.45 37.57 4.02
192 193 1.909700 AAAATGAGATGCCACGTGGT 58.090 45.000 33.92 17.27 37.57 4.16
193 194 2.030007 ACAAAAATGAGATGCCACGTGG 60.030 45.455 30.66 30.66 38.53 4.94
194 195 2.981805 CACAAAAATGAGATGCCACGTG 59.018 45.455 9.08 9.08 0.00 4.49
195 196 2.622942 ACACAAAAATGAGATGCCACGT 59.377 40.909 0.00 0.00 0.00 4.49
196 197 3.287312 ACACAAAAATGAGATGCCACG 57.713 42.857 0.00 0.00 0.00 4.94
197 198 5.989551 AAAACACAAAAATGAGATGCCAC 57.010 34.783 0.00 0.00 0.00 5.01
217 218 4.993029 ATTCAGAACGTGGGAACAAAAA 57.007 36.364 0.00 0.00 46.06 1.94
218 219 4.993029 AATTCAGAACGTGGGAACAAAA 57.007 36.364 0.00 0.00 46.06 2.44
219 220 4.993029 AAATTCAGAACGTGGGAACAAA 57.007 36.364 0.00 0.00 46.06 2.83
220 221 4.202070 GGAAAATTCAGAACGTGGGAACAA 60.202 41.667 0.00 0.00 46.06 2.83
221 222 3.316868 GGAAAATTCAGAACGTGGGAACA 59.683 43.478 0.00 0.00 38.70 3.18
222 223 3.568430 AGGAAAATTCAGAACGTGGGAAC 59.432 43.478 0.00 0.00 0.00 3.62
223 224 3.818773 GAGGAAAATTCAGAACGTGGGAA 59.181 43.478 0.00 0.00 0.00 3.97
224 225 3.181449 TGAGGAAAATTCAGAACGTGGGA 60.181 43.478 0.00 0.00 0.00 4.37
225 226 3.146066 TGAGGAAAATTCAGAACGTGGG 58.854 45.455 0.00 0.00 0.00 4.61
226 227 4.829064 TTGAGGAAAATTCAGAACGTGG 57.171 40.909 0.00 0.00 0.00 4.94
227 228 6.437928 TGAATTGAGGAAAATTCAGAACGTG 58.562 36.000 7.98 0.00 46.51 4.49
228 229 6.633500 TGAATTGAGGAAAATTCAGAACGT 57.367 33.333 7.98 0.00 46.51 3.99
235 236 6.369890 GGGCTTCTTTGAATTGAGGAAAATTC 59.630 38.462 3.29 3.29 43.76 2.17
236 237 6.043590 AGGGCTTCTTTGAATTGAGGAAAATT 59.956 34.615 0.00 0.00 32.43 1.82
237 238 5.545335 AGGGCTTCTTTGAATTGAGGAAAAT 59.455 36.000 0.00 0.00 0.00 1.82
238 239 4.901250 AGGGCTTCTTTGAATTGAGGAAAA 59.099 37.500 0.00 0.00 0.00 2.29
239 240 4.482990 AGGGCTTCTTTGAATTGAGGAAA 58.517 39.130 0.00 0.00 0.00 3.13
240 241 4.118168 AGGGCTTCTTTGAATTGAGGAA 57.882 40.909 0.00 0.00 0.00 3.36
241 242 3.814504 AGGGCTTCTTTGAATTGAGGA 57.185 42.857 0.00 0.00 0.00 3.71
242 243 6.595682 TCTATAGGGCTTCTTTGAATTGAGG 58.404 40.000 0.00 0.00 0.00 3.86
243 244 8.688747 ATTCTATAGGGCTTCTTTGAATTGAG 57.311 34.615 0.00 0.00 0.00 3.02
244 245 9.125026 GAATTCTATAGGGCTTCTTTGAATTGA 57.875 33.333 0.00 0.00 34.40 2.57
245 246 8.906867 TGAATTCTATAGGGCTTCTTTGAATTG 58.093 33.333 7.05 0.00 34.40 2.32
246 247 9.129532 CTGAATTCTATAGGGCTTCTTTGAATT 57.870 33.333 7.05 0.00 36.15 2.17
247 248 8.277918 ACTGAATTCTATAGGGCTTCTTTGAAT 58.722 33.333 7.05 0.00 0.00 2.57
248 249 7.633789 ACTGAATTCTATAGGGCTTCTTTGAA 58.366 34.615 7.05 0.00 0.00 2.69
249 250 7.200434 ACTGAATTCTATAGGGCTTCTTTGA 57.800 36.000 7.05 0.00 0.00 2.69
250 251 7.987458 TGTACTGAATTCTATAGGGCTTCTTTG 59.013 37.037 7.05 0.42 0.00 2.77
251 252 8.090788 TGTACTGAATTCTATAGGGCTTCTTT 57.909 34.615 7.05 0.00 0.00 2.52
252 253 7.676683 TGTACTGAATTCTATAGGGCTTCTT 57.323 36.000 7.05 0.00 0.00 2.52
253 254 7.676683 TTGTACTGAATTCTATAGGGCTTCT 57.323 36.000 7.05 0.00 0.00 2.85
254 255 7.442666 CCTTTGTACTGAATTCTATAGGGCTTC 59.557 40.741 7.05 2.04 0.00 3.86
255 256 7.127339 TCCTTTGTACTGAATTCTATAGGGCTT 59.873 37.037 7.05 0.00 0.00 4.35
256 257 6.615726 TCCTTTGTACTGAATTCTATAGGGCT 59.384 38.462 7.05 0.00 0.00 5.19
257 258 6.827727 TCCTTTGTACTGAATTCTATAGGGC 58.172 40.000 7.05 0.00 0.00 5.19
258 259 9.495572 GATTCCTTTGTACTGAATTCTATAGGG 57.504 37.037 7.05 0.00 0.00 3.53
294 295 4.979335 TGGCCAATTCATATCGGAATACA 58.021 39.130 0.61 0.00 36.51 2.29
295 296 5.957842 TTGGCCAATTCATATCGGAATAC 57.042 39.130 16.05 0.00 36.51 1.89
317 502 2.027745 CCTGTGTTAGAGAGTGTGGCAT 60.028 50.000 0.00 0.00 0.00 4.40
320 505 1.276421 CCCCTGTGTTAGAGAGTGTGG 59.724 57.143 0.00 0.00 0.00 4.17
321 506 1.338200 GCCCCTGTGTTAGAGAGTGTG 60.338 57.143 0.00 0.00 0.00 3.82
325 510 1.517832 CCGCCCCTGTGTTAGAGAG 59.482 63.158 0.00 0.00 0.00 3.20
348 533 2.493278 ACATTATGTGCCTTGGTTGCTC 59.507 45.455 0.00 0.00 0.00 4.26
381 567 5.562298 ACTTTTAGTGCTTCACCTCCTTA 57.438 39.130 0.00 0.00 34.49 2.69
397 585 5.860941 TGATGGGCTTTTCACAACTTTTA 57.139 34.783 0.00 0.00 0.00 1.52
506 697 1.675310 CATTGGACCAGCTCGGCAA 60.675 57.895 0.00 1.30 39.03 4.52
612 804 0.108585 TCTGGGTGCTCGCTTTTTCT 59.891 50.000 4.41 0.00 0.00 2.52
628 820 2.901813 CCTGAGCCTCTGCCTCTG 59.098 66.667 0.00 0.00 38.69 3.35
629 821 3.082701 GCCTGAGCCTCTGCCTCT 61.083 66.667 0.00 0.00 38.69 3.69
630 822 3.397439 TGCCTGAGCCTCTGCCTC 61.397 66.667 4.70 0.00 38.69 4.70
631 823 3.715097 GTGCCTGAGCCTCTGCCT 61.715 66.667 4.70 0.00 38.69 4.75
742 940 1.697754 GAGGGGTGATGGATGGGGT 60.698 63.158 0.00 0.00 0.00 4.95
986 1189 1.373570 CGCCATTGTTTCCTCTCCTC 58.626 55.000 0.00 0.00 0.00 3.71
993 1196 1.298859 ACGAGAGCGCCATTGTTTCC 61.299 55.000 2.29 0.00 42.48 3.13
994 1197 0.095417 GACGAGAGCGCCATTGTTTC 59.905 55.000 2.29 0.00 42.48 2.78
995 1198 1.626654 CGACGAGAGCGCCATTGTTT 61.627 55.000 2.29 0.00 42.48 2.83
1094 1297 0.247736 CTGACTAACCTTGAGCGGCT 59.752 55.000 0.00 0.00 0.00 5.52
1142 1348 2.003301 GAACAGAGAAGAATCGGCCAC 58.997 52.381 2.24 0.00 0.00 5.01
1386 1596 3.199946 TCTTCATGTGGATGGGGTAGTTC 59.800 47.826 0.00 0.00 0.00 3.01
1616 1831 2.269241 GCTGGGTAGGACAGGTGC 59.731 66.667 0.00 0.00 36.48 5.01
1623 1838 3.224324 GCCGATCGCTGGGTAGGA 61.224 66.667 10.32 0.00 0.00 2.94
1706 1922 1.153449 GGCACGGTCCATCAATCGA 60.153 57.895 0.00 0.00 0.00 3.59
1906 2123 6.121590 TGCTTCATAATCAAATGCAGAGGTA 58.878 36.000 0.00 0.00 0.00 3.08
1931 2148 6.820656 ACAGATTCTTCACGAGCAGATTAAAT 59.179 34.615 0.00 0.00 0.00 1.40
1932 2149 6.166279 ACAGATTCTTCACGAGCAGATTAAA 58.834 36.000 0.00 0.00 0.00 1.52
1949 2166 2.915463 CACGTCCGTTCACTACAGATTC 59.085 50.000 0.00 0.00 0.00 2.52
1956 2173 2.819019 TGATTACCACGTCCGTTCACTA 59.181 45.455 0.00 0.00 0.00 2.74
2031 2248 1.278637 CGCCACCACGTTGTTCTTC 59.721 57.895 0.00 0.00 0.00 2.87
2109 2326 1.664873 TCATGTCCGAGTCGAGGTAG 58.335 55.000 15.64 0.90 0.00 3.18
2133 2350 2.143122 TGCTTGTTGTCGTTGAGGATC 58.857 47.619 0.00 0.00 0.00 3.36
2285 2502 0.321919 TGCAGTGAAGGAGGTGCATC 60.322 55.000 0.00 0.00 40.93 3.91
2297 2515 4.281657 ACTATCTATGGAGTGTGCAGTGA 58.718 43.478 0.00 0.00 0.00 3.41
2400 2620 0.787787 GCGCACACGACTTGTTATCA 59.212 50.000 0.30 0.00 43.93 2.15
2428 2655 5.678132 TTGTCCCGAAGTAAGTTTTTAGC 57.322 39.130 0.00 0.00 0.00 3.09
2438 2665 8.630917 TGTTTCAAATTTATTTGTCCCGAAGTA 58.369 29.630 13.28 0.00 45.49 2.24
2439 2666 7.493367 TGTTTCAAATTTATTTGTCCCGAAGT 58.507 30.769 13.28 0.00 45.49 3.01
2440 2667 7.651704 ACTGTTTCAAATTTATTTGTCCCGAAG 59.348 33.333 13.28 8.47 45.49 3.79
2441 2668 7.436673 CACTGTTTCAAATTTATTTGTCCCGAA 59.563 33.333 13.28 0.26 45.49 4.30
2442 2669 6.920758 CACTGTTTCAAATTTATTTGTCCCGA 59.079 34.615 13.28 0.00 45.49 5.14
2443 2670 6.920758 TCACTGTTTCAAATTTATTTGTCCCG 59.079 34.615 13.28 4.74 45.49 5.14
2444 2671 8.655651 TTCACTGTTTCAAATTTATTTGTCCC 57.344 30.769 13.28 5.08 45.49 4.46
2468 2695 4.773674 TGCTGATTTCCCTGTCATTTCATT 59.226 37.500 0.00 0.00 0.00 2.57
2482 2709 4.668576 TTGTCGTTCTGATGCTGATTTC 57.331 40.909 0.00 0.00 0.00 2.17
2497 2724 7.687005 TTGCTTCGATTTTTAAAATTGTCGT 57.313 28.000 20.51 0.00 0.00 4.34
2499 2726 8.053653 ACGTTTGCTTCGATTTTTAAAATTGTC 58.946 29.630 14.99 8.21 0.00 3.18
2503 2730 7.221067 TGACACGTTTGCTTCGATTTTTAAAAT 59.779 29.630 2.23 2.23 0.00 1.82
2508 2737 4.022464 TGACACGTTTGCTTCGATTTTT 57.978 36.364 0.00 0.00 0.00 1.94
2518 2747 1.367665 GCGACACTGACACGTTTGC 60.368 57.895 0.00 0.00 0.00 3.68
2632 2863 1.730501 CACTACACCTGGCACTGATG 58.269 55.000 0.00 0.00 0.00 3.07
2684 2915 9.237187 CTAGATATGCTACTCTAGGTTTCATCA 57.763 37.037 8.35 0.00 38.09 3.07
2739 2970 1.163554 CCCTGAACTGAGCTCTTTGC 58.836 55.000 16.19 0.40 43.29 3.68
2740 2971 2.847327 TCCCTGAACTGAGCTCTTTG 57.153 50.000 16.19 7.77 0.00 2.77
2819 3050 3.373439 GTCCTTGCTGTCAGATTGTGATC 59.627 47.826 3.32 0.00 37.56 2.92
2821 3052 2.104622 TGTCCTTGCTGTCAGATTGTGA 59.895 45.455 3.32 0.00 0.00 3.58
2896 3127 7.282901 TGTCAAGTGATCAGATTTGAAGTGAAA 59.717 33.333 15.11 0.00 36.78 2.69
2949 3180 1.333177 GGACTACGATCAGGCCAGAT 58.667 55.000 10.95 10.95 44.01 2.90
2955 3186 6.164176 AGTTTACAAAAGGACTACGATCAGG 58.836 40.000 0.00 0.00 0.00 3.86
2959 3190 6.104665 GCCTAGTTTACAAAAGGACTACGAT 58.895 40.000 0.00 0.00 0.00 3.73
2962 3193 4.628766 CCGCCTAGTTTACAAAAGGACTAC 59.371 45.833 0.00 0.00 0.00 2.73
2965 3196 2.161012 GCCGCCTAGTTTACAAAAGGAC 59.839 50.000 0.00 0.00 0.00 3.85
2992 3227 1.974957 GCCCAACAATTAAACCCTGGT 59.025 47.619 0.00 0.00 0.00 4.00
2993 3228 1.277842 GGCCCAACAATTAAACCCTGG 59.722 52.381 0.00 0.00 0.00 4.45
2994 3229 1.067213 CGGCCCAACAATTAAACCCTG 60.067 52.381 0.00 0.00 0.00 4.45
2996 3231 1.203758 CTCGGCCCAACAATTAAACCC 59.796 52.381 0.00 0.00 0.00 4.11
2997 3232 1.403647 GCTCGGCCCAACAATTAAACC 60.404 52.381 0.00 0.00 0.00 3.27
3002 3240 3.061848 CCGCTCGGCCCAACAATT 61.062 61.111 0.00 0.00 0.00 2.32
3026 3264 1.051812 AGTCGAATATCTGGGCCCAG 58.948 55.000 41.73 41.73 44.86 4.45
3027 3265 0.758734 CAGTCGAATATCTGGGCCCA 59.241 55.000 26.67 26.67 0.00 5.36
3072 3310 0.033504 TTGCTTCGTCACTCCCTGAC 59.966 55.000 0.00 0.00 45.38 3.51
3190 3428 0.665369 CGACGGGGCCGATGTAATAC 60.665 60.000 0.00 0.00 42.83 1.89
3193 3431 2.755064 TCGACGGGGCCGATGTAA 60.755 61.111 0.00 0.00 42.83 2.41
3223 3461 0.824109 GGATGGTGATGAGGTCGTCA 59.176 55.000 0.00 0.00 39.38 4.35
3244 3482 3.319198 GTGCCCTTGACCTCCCGA 61.319 66.667 0.00 0.00 0.00 5.14
3277 3515 1.945394 GTGATGACATGGATGAGCACC 59.055 52.381 0.00 0.00 0.00 5.01
3465 3759 2.359975 CCGGGACCTTGAACTGCC 60.360 66.667 0.00 0.00 0.00 4.85
3643 3937 1.957186 GGTTACGGCGTGCTGTTCA 60.957 57.895 24.86 0.00 36.80 3.18
3646 3940 1.666872 GAAGGTTACGGCGTGCTGT 60.667 57.895 24.86 11.57 39.18 4.40
3865 4159 3.248043 CATGACGACCATGTTGGGT 57.752 52.632 12.21 0.00 45.83 4.51
4041 4335 6.531503 AATCTCCTCTCGAAGTTATGAACA 57.468 37.500 0.00 0.00 0.00 3.18
4052 4346 2.173782 ACAGCCTCTAATCTCCTCTCGA 59.826 50.000 0.00 0.00 0.00 4.04
4059 4353 2.733517 GCGTACACAGCCTCTAATCTC 58.266 52.381 0.00 0.00 0.00 2.75
4069 4363 1.978697 CGTTACTCGCGTACACAGC 59.021 57.895 5.77 0.00 0.00 4.40
4082 4376 0.110509 TCAGTCGTCAGTCGCGTTAC 60.111 55.000 5.77 0.00 39.67 2.50
4084 4378 1.370172 GTCAGTCGTCAGTCGCGTT 60.370 57.895 5.77 0.00 39.67 4.84
4089 4383 3.242155 CGTAGATCAGTCAGTCGTCAGTC 60.242 52.174 0.00 0.00 0.00 3.51
4112 4406 1.112315 TTGCCGACCTGCCAAACATT 61.112 50.000 0.00 0.00 0.00 2.71
4225 4519 4.394712 GTGACCCTGAGGCCGTGG 62.395 72.222 0.00 0.17 36.11 4.94
4354 4648 0.176910 TGAACTGAGCCACGTGTGAA 59.823 50.000 15.65 0.00 0.00 3.18
4393 4687 3.063045 CGATTACCTTAAGTTTGCCGTCC 59.937 47.826 0.97 0.00 0.00 4.79
4417 4711 8.267620 TGACAATGTTAGTTTGATCAATCGAT 57.732 30.769 9.40 0.00 33.31 3.59
4418 4712 7.665561 TGACAATGTTAGTTTGATCAATCGA 57.334 32.000 9.40 1.92 0.00 3.59
4419 4713 8.900511 ATTGACAATGTTAGTTTGATCAATCG 57.099 30.769 9.40 0.00 34.02 3.34
4420 4714 9.844790 TGATTGACAATGTTAGTTTGATCAATC 57.155 29.630 9.40 20.15 42.54 2.67
4421 4715 9.850628 CTGATTGACAATGTTAGTTTGATCAAT 57.149 29.630 9.40 0.00 37.43 2.57
4431 4725 5.391310 GGTGCAGACTGATTGACAATGTTAG 60.391 44.000 6.65 4.05 0.00 2.34
4432 4726 4.455533 GGTGCAGACTGATTGACAATGTTA 59.544 41.667 6.65 0.00 0.00 2.41
4445 4739 2.507110 ATTCGGTCGGGTGCAGACTG 62.507 60.000 7.00 7.00 44.17 3.51
4446 4740 0.968901 TATTCGGTCGGGTGCAGACT 60.969 55.000 4.76 0.00 38.58 3.24
4450 4744 0.609151 TTTCTATTCGGTCGGGTGCA 59.391 50.000 0.00 0.00 0.00 4.57
4452 4746 3.527533 TGATTTTCTATTCGGTCGGGTG 58.472 45.455 0.00 0.00 0.00 4.61
4453 4747 3.449737 TCTGATTTTCTATTCGGTCGGGT 59.550 43.478 0.00 0.00 0.00 5.28
4454 4748 4.054780 TCTGATTTTCTATTCGGTCGGG 57.945 45.455 0.00 0.00 0.00 5.14
4455 4749 6.257849 TGATTTCTGATTTTCTATTCGGTCGG 59.742 38.462 0.00 0.00 0.00 4.79
4456 4750 7.234187 TGATTTCTGATTTTCTATTCGGTCG 57.766 36.000 0.00 0.00 0.00 4.79
4457 4751 7.128976 GCTGATTTCTGATTTTCTATTCGGTC 58.871 38.462 0.00 0.00 0.00 4.79
4459 4753 6.909357 GTGCTGATTTCTGATTTTCTATTCGG 59.091 38.462 0.00 0.00 0.00 4.30
4460 4754 7.466805 TGTGCTGATTTCTGATTTTCTATTCG 58.533 34.615 0.00 0.00 0.00 3.34
4461 4755 9.630098 TTTGTGCTGATTTCTGATTTTCTATTC 57.370 29.630 0.00 0.00 0.00 1.75
4465 4759 8.579006 TGTATTTGTGCTGATTTCTGATTTTCT 58.421 29.630 0.00 0.00 0.00 2.52
4467 4761 9.715121 AATGTATTTGTGCTGATTTCTGATTTT 57.285 25.926 0.00 0.00 0.00 1.82
4469 4763 7.277098 GCAATGTATTTGTGCTGATTTCTGATT 59.723 33.333 0.00 0.00 37.65 2.57
4471 4765 6.071784 AGCAATGTATTTGTGCTGATTTCTGA 60.072 34.615 0.00 0.00 46.58 3.27
4472 4766 6.097356 AGCAATGTATTTGTGCTGATTTCTG 58.903 36.000 0.00 0.00 46.58 3.02
4481 4775 6.122850 TGTCATAGAGCAATGTATTTGTGC 57.877 37.500 0.00 0.00 37.65 4.57
4482 4776 7.646526 CCAATGTCATAGAGCAATGTATTTGTG 59.353 37.037 0.00 0.00 37.65 3.33
4483 4777 7.340232 ACCAATGTCATAGAGCAATGTATTTGT 59.660 33.333 0.00 0.00 37.65 2.83
4484 4778 7.646526 CACCAATGTCATAGAGCAATGTATTTG 59.353 37.037 0.00 0.00 38.43 2.32
4487 4781 6.484643 GTCACCAATGTCATAGAGCAATGTAT 59.515 38.462 0.00 0.00 0.00 2.29
4488 4782 5.817296 GTCACCAATGTCATAGAGCAATGTA 59.183 40.000 0.00 0.00 0.00 2.29
4490 4784 4.637091 TGTCACCAATGTCATAGAGCAATG 59.363 41.667 0.00 0.00 0.00 2.82
4491 4785 4.847198 TGTCACCAATGTCATAGAGCAAT 58.153 39.130 0.00 0.00 0.00 3.56
4492 4786 4.284829 TGTCACCAATGTCATAGAGCAA 57.715 40.909 0.00 0.00 0.00 3.91
4493 4787 3.979101 TGTCACCAATGTCATAGAGCA 57.021 42.857 0.00 0.00 0.00 4.26
4494 4788 5.994054 ACATATGTCACCAATGTCATAGAGC 59.006 40.000 1.41 0.00 39.28 4.09
4495 4789 7.170489 GTCACATATGTCACCAATGTCATAGAG 59.830 40.741 5.07 0.00 39.28 2.43
4496 4790 6.986231 GTCACATATGTCACCAATGTCATAGA 59.014 38.462 5.07 0.00 39.28 1.98
4497 4791 6.988580 AGTCACATATGTCACCAATGTCATAG 59.011 38.462 6.22 0.00 39.28 2.23
4498 4792 6.888105 AGTCACATATGTCACCAATGTCATA 58.112 36.000 6.22 0.00 39.91 2.15
4499 4793 5.748402 AGTCACATATGTCACCAATGTCAT 58.252 37.500 6.22 0.00 38.08 3.06
4500 4794 5.164620 AGTCACATATGTCACCAATGTCA 57.835 39.130 6.22 0.00 31.60 3.58
4501 4795 7.254898 CCATTAGTCACATATGTCACCAATGTC 60.255 40.741 22.43 4.10 31.60 3.06
4505 4799 4.881273 GCCATTAGTCACATATGTCACCAA 59.119 41.667 6.22 0.00 0.00 3.67
4508 4802 4.368315 TCGCCATTAGTCACATATGTCAC 58.632 43.478 5.07 2.92 0.00 3.67
4511 4805 6.942532 AAATTCGCCATTAGTCACATATGT 57.057 33.333 1.41 1.41 0.00 2.29
4513 4807 8.225603 AGAAAAATTCGCCATTAGTCACATAT 57.774 30.769 0.00 0.00 34.02 1.78
4516 4810 5.957842 AGAAAAATTCGCCATTAGTCACA 57.042 34.783 0.00 0.00 34.02 3.58
4523 4817 4.713553 ACCCAAAAGAAAAATTCGCCATT 58.286 34.783 0.00 0.00 34.02 3.16
4527 4821 4.785025 GCACAACCCAAAAGAAAAATTCGC 60.785 41.667 0.00 0.00 34.02 4.70
4528 4822 4.331168 TGCACAACCCAAAAGAAAAATTCG 59.669 37.500 0.00 0.00 34.02 3.34
4538 4832 1.519719 GCCACTGCACAACCCAAAA 59.480 52.632 0.00 0.00 37.47 2.44
4570 4864 0.813184 GGTCGATGTACTTGTCGGGA 59.187 55.000 13.22 0.00 38.34 5.14
4813 5110 3.313249 CGAAAAACTACCAACGTTTCCCT 59.687 43.478 0.00 0.00 33.76 4.20
4829 5126 3.191581 TCAGTGCACCAAAGAACGAAAAA 59.808 39.130 14.63 0.00 0.00 1.94
5016 5313 2.197324 AAAGCTTGCCCCGGTTCA 59.803 55.556 0.00 0.00 0.00 3.18
5059 5357 2.997986 CGTGGTTTAACTAGGCAACGAT 59.002 45.455 0.00 0.00 46.39 3.73
5061 5359 2.406130 TCGTGGTTTAACTAGGCAACG 58.594 47.619 0.00 0.00 46.39 4.10
5073 5371 3.697045 TGTGAAAACTCCATTCGTGGTTT 59.303 39.130 0.00 0.00 34.01 3.27
5116 5414 5.825679 TGGAATGGAACCCGACTTAATAATG 59.174 40.000 0.00 0.00 0.00 1.90
5125 5423 2.092914 AGATCTTGGAATGGAACCCGAC 60.093 50.000 0.00 0.00 0.00 4.79
5182 5483 3.253432 GGACAAACCACATGAAGACCTTC 59.747 47.826 0.00 2.94 38.08 3.46
5250 5551 1.866015 ACATCTCCGTGATCCTTCCA 58.134 50.000 0.00 0.00 32.05 3.53
5307 5608 0.455815 GGCCATCGGACAATCCAAAC 59.544 55.000 0.00 0.00 35.91 2.93
5309 5610 1.688211 TGGCCATCGGACAATCCAA 59.312 52.632 0.00 0.00 38.06 3.53
5412 5714 6.865834 ATTTCCATGTCTCTGTCTCTACTT 57.134 37.500 0.00 0.00 0.00 2.24
5429 5731 7.672660 ACATACTCCTACACGGATATATTTCCA 59.327 37.037 12.09 0.00 42.12 3.53
5430 5732 7.974501 CACATACTCCTACACGGATATATTTCC 59.025 40.741 2.25 2.25 42.12 3.13
5435 5737 5.567430 AGCACATACTCCTACACGGATATA 58.433 41.667 0.00 0.00 42.12 0.86
5496 5798 9.927668 AATGGATATGTGTTTTCCTGTTAAAAG 57.072 29.630 0.00 0.00 0.00 2.27
5523 5825 3.119352 GCCCTGAAGATAACCTGCAAAAG 60.119 47.826 0.00 0.00 27.65 2.27
5569 5872 4.467438 TGACATCCTTCTGAGTGAATAGCA 59.533 41.667 0.00 0.00 33.71 3.49
5574 5877 3.903714 TCCTTGACATCCTTCTGAGTGAA 59.096 43.478 0.00 0.00 0.00 3.18
5581 5884 4.015084 CAAATGCTCCTTGACATCCTTCT 58.985 43.478 0.00 0.00 0.00 2.85
5584 5887 3.726557 TCAAATGCTCCTTGACATCCT 57.273 42.857 0.00 0.00 0.00 3.24
5635 5938 1.694844 TATGACCGTCATAGCCCGAA 58.305 50.000 15.89 0.00 38.26 4.30
5672 5992 5.005490 GCGGAAGAAAGAGAAATAGGTAACG 59.995 44.000 0.00 0.00 46.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.