Multiple sequence alignment - TraesCS1B01G266200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G266200 chr1B 100.000 5218 0 0 1 5218 467935105 467929888 0.000000e+00 9636.0
1 TraesCS1B01G266200 chr1B 84.348 345 25 15 4874 5218 561636224 561635909 1.410000e-80 311.0
2 TraesCS1B01G266200 chr1B 88.971 136 15 0 4828 4963 648692976 648692841 8.990000e-38 169.0
3 TraesCS1B01G266200 chr1D 94.387 4240 140 39 650 4829 347219723 347215522 0.000000e+00 6421.0
4 TraesCS1B01G266200 chr1D 85.407 418 32 17 114 523 347220183 347219787 1.750000e-109 407.0
5 TraesCS1B01G266200 chr1D 90.110 182 17 1 5037 5218 415334087 415333907 8.740000e-58 235.0
6 TraesCS1B01G266200 chr1D 88.462 52 2 2 568 619 347219770 347219723 5.640000e-05 60.2
7 TraesCS1B01G266200 chr1A 92.012 2003 71 29 650 2599 447644519 447642553 0.000000e+00 2730.0
8 TraesCS1B01G266200 chr1A 96.934 1598 41 4 2717 4306 447642509 447640912 0.000000e+00 2673.0
9 TraesCS1B01G266200 chr1A 88.980 608 34 10 4248 4829 447640918 447640318 0.000000e+00 721.0
10 TraesCS1B01G266200 chr1A 93.559 295 16 3 201 494 447644891 447644599 2.230000e-118 436.0
11 TraesCS1B01G266200 chr1A 88.406 69 4 2 551 619 447644583 447644519 4.330000e-11 80.5
12 TraesCS1B01G266200 chr1A 95.349 43 2 0 2636 2678 447642547 447642505 9.380000e-08 69.4
13 TraesCS1B01G266200 chr5A 98.210 391 7 0 4828 5218 609279849 609279459 0.000000e+00 684.0
14 TraesCS1B01G266200 chr3A 97.468 395 8 1 4826 5218 714564628 714564234 0.000000e+00 673.0
15 TraesCS1B01G266200 chr6B 97.208 394 11 0 4825 5218 332426050 332426443 0.000000e+00 667.0
16 TraesCS1B01G266200 chr6B 96.875 32 1 0 624 655 233902166 233902197 3.000000e-03 54.7
17 TraesCS1B01G266200 chr5B 90.441 136 13 0 4828 4963 642132745 642132610 4.150000e-41 180.0
18 TraesCS1B01G266200 chr5B 96.970 33 0 1 624 656 399892603 399892634 3.000000e-03 54.7
19 TraesCS1B01G266200 chr4B 90.441 136 11 2 4829 4963 435130624 435130758 1.490000e-40 178.0
20 TraesCS1B01G266200 chr7B 88.489 139 16 0 4822 4960 177977157 177977295 8.990000e-38 169.0
21 TraesCS1B01G266200 chr2A 88.235 136 16 0 4828 4963 650633440 650633575 4.180000e-36 163.0
22 TraesCS1B01G266200 chr6A 94.444 36 1 1 624 659 560599774 560599740 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G266200 chr1B 467929888 467935105 5217 True 9636.000000 9636 100.000000 1 5218 1 chr1B.!!$R1 5217
1 TraesCS1B01G266200 chr1D 347215522 347220183 4661 True 2296.066667 6421 89.418667 114 4829 3 chr1D.!!$R2 4715
2 TraesCS1B01G266200 chr1A 447640318 447644891 4573 True 1118.316667 2730 92.540000 201 4829 6 chr1A.!!$R1 4628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.036164 TAAATGGGCTGCTCACACGT 59.964 50.000 3.32 0.0 0.00 4.49 F
331 339 0.250727 TTCCCAGCCACGGAAGAAAG 60.251 55.000 0.00 0.0 34.40 2.62 F
383 391 0.538516 AATGGCCCAACAGTAACGCA 60.539 50.000 0.00 0.0 0.00 5.24 F
1882 1940 1.068194 CGCTTCGGGAGGATCTATGAC 60.068 57.143 0.00 0.0 33.73 3.06 F
2485 2555 0.098905 TGCTCTAGCGAACACTAGCG 59.901 55.000 0.00 0.0 45.83 4.26 F
3177 3254 0.107848 ATACTGGGCCGTTTTCCTCG 60.108 55.000 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1553 0.296349 GCGCGGACAAACAAACAAAC 59.704 50.000 8.83 0.0 0.00 2.93 R
1684 1741 0.752009 AGCGAACTCGGGATAGCTCA 60.752 55.000 0.00 0.0 40.23 4.26 R
2195 2258 1.016653 GCTTCGAACCTGCACTCCTC 61.017 60.000 0.00 0.0 0.00 3.71 R
2811 2888 1.467342 GTCCGTGTGGTTCCATTAAGC 59.533 52.381 0.00 0.0 36.30 3.09 R
3624 3706 3.118629 TGCAGTCAGAATCATCCACTACC 60.119 47.826 0.00 0.0 0.00 3.18 R
4837 5001 0.031178 GGCAGCAAAAGGACACACTG 59.969 55.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.907866 TTTTACCTAACTAAATGGGCTGC 57.092 39.130 0.00 0.00 0.00 5.25
68 69 4.855298 TTACCTAACTAAATGGGCTGCT 57.145 40.909 0.00 0.00 0.00 4.24
69 70 3.283259 ACCTAACTAAATGGGCTGCTC 57.717 47.619 0.00 0.00 0.00 4.26
70 71 2.576191 ACCTAACTAAATGGGCTGCTCA 59.424 45.455 3.90 3.90 0.00 4.26
71 72 2.945668 CCTAACTAAATGGGCTGCTCAC 59.054 50.000 3.32 0.00 0.00 3.51
72 73 2.584835 AACTAAATGGGCTGCTCACA 57.415 45.000 3.32 0.00 0.00 3.58
73 74 1.826385 ACTAAATGGGCTGCTCACAC 58.174 50.000 3.32 0.00 0.00 3.82
74 75 0.729116 CTAAATGGGCTGCTCACACG 59.271 55.000 3.32 0.00 0.00 4.49
75 76 0.036164 TAAATGGGCTGCTCACACGT 59.964 50.000 3.32 0.00 0.00 4.49
76 77 1.518056 AAATGGGCTGCTCACACGTG 61.518 55.000 15.48 15.48 0.00 4.49
77 78 3.907260 ATGGGCTGCTCACACGTGG 62.907 63.158 21.57 9.11 0.00 4.94
80 81 3.052082 GCTGCTCACACGTGGCAT 61.052 61.111 21.57 0.00 36.62 4.40
81 82 2.865308 CTGCTCACACGTGGCATG 59.135 61.111 21.57 9.49 36.62 4.06
82 83 3.318539 CTGCTCACACGTGGCATGC 62.319 63.158 21.57 9.90 36.62 4.06
83 84 3.052082 GCTCACACGTGGCATGCT 61.052 61.111 21.57 0.00 0.00 3.79
84 85 1.741401 GCTCACACGTGGCATGCTA 60.741 57.895 21.57 9.16 0.00 3.49
85 86 1.970917 GCTCACACGTGGCATGCTAC 61.971 60.000 23.11 23.11 0.00 3.58
165 166 5.470098 CACGCTACAATTCTTGGCCTATATT 59.530 40.000 3.32 0.00 34.12 1.28
183 185 9.516314 GCCTATATTTATTTTCAAGTGGTTGTC 57.484 33.333 0.00 0.00 34.98 3.18
222 230 2.829384 GGTTGTCCTGCCTCACCCA 61.829 63.158 0.00 0.00 0.00 4.51
331 339 0.250727 TTCCCAGCCACGGAAGAAAG 60.251 55.000 0.00 0.00 34.40 2.62
333 341 2.335712 CCAGCCACGGAAGAAAGCC 61.336 63.158 0.00 0.00 0.00 4.35
352 360 1.003718 GGGAAACGGACCCACTCTG 60.004 63.158 8.57 0.00 46.05 3.35
383 391 0.538516 AATGGCCCAACAGTAACGCA 60.539 50.000 0.00 0.00 0.00 5.24
388 396 1.503818 CCCAACAGTAACGCAACGCT 61.504 55.000 0.00 0.00 0.00 5.07
496 505 3.756727 GCCAAAGGCTGCTGCTCC 61.757 66.667 15.64 2.11 46.69 4.70
497 506 3.066814 CCAAAGGCTGCTGCTCCC 61.067 66.667 15.64 0.81 39.59 4.30
498 507 2.035312 CAAAGGCTGCTGCTCCCT 59.965 61.111 15.64 3.42 39.59 4.20
541 550 4.738998 CATCCACGCCAAGCCCCA 62.739 66.667 0.00 0.00 0.00 4.96
542 551 4.740822 ATCCACGCCAAGCCCCAC 62.741 66.667 0.00 0.00 0.00 4.61
579 588 3.062466 CGAGACGAGGCTCCACCA 61.062 66.667 9.32 0.00 43.14 4.17
581 590 2.681778 AGACGAGGCTCCACCAGG 60.682 66.667 9.32 0.00 43.14 4.45
589 598 4.729918 CTCCACCAGGCAGCCACC 62.730 72.222 15.80 0.00 33.74 4.61
681 690 2.614969 ATGCCTCCCCAGCCAAGA 60.615 61.111 0.00 0.00 0.00 3.02
741 755 4.736896 GTCCGACTCACACCCGCC 62.737 72.222 0.00 0.00 0.00 6.13
962 995 3.883744 CTTGCCAGCGACGGAAGGT 62.884 63.158 0.00 0.00 0.00 3.50
973 1020 2.567985 GACGGAAGGTAGGAGAGAGAG 58.432 57.143 0.00 0.00 0.00 3.20
1434 1489 3.285523 TACGTGCGTACCTGTGGCC 62.286 63.158 0.00 0.00 0.00 5.36
1645 1700 4.345547 TGGGTGGGAAAATTACCAAAGTTC 59.654 41.667 0.00 0.00 44.43 3.01
1684 1741 5.047092 GGTTGGACACCATTCAAATCTTGAT 60.047 40.000 0.00 0.00 46.42 2.57
1694 1751 6.072064 CCATTCAAATCTTGATGAGCTATCCC 60.072 42.308 0.00 0.00 39.84 3.85
1697 1754 4.533919 AATCTTGATGAGCTATCCCGAG 57.466 45.455 0.00 0.00 34.77 4.63
1882 1940 1.068194 CGCTTCGGGAGGATCTATGAC 60.068 57.143 0.00 0.00 33.73 3.06
1885 1943 1.996798 TCGGGAGGATCTATGACACC 58.003 55.000 0.00 0.00 33.73 4.16
1889 1947 2.490351 GGGAGGATCTATGACACCGGTA 60.490 54.545 6.87 0.00 33.73 4.02
1899 1957 1.700739 TGACACCGGTAAGGATTTGGT 59.299 47.619 6.87 0.00 45.00 3.67
1962 2024 9.617975 GAGTTTGGATTTAGAGTTCTTCATTTG 57.382 33.333 0.00 0.00 0.00 2.32
1970 2033 7.510549 TTAGAGTTCTTCATTTGGGTTTCTG 57.489 36.000 0.00 0.00 0.00 3.02
2176 2239 5.308976 TCATGCTTATCCTATGCTTTCCA 57.691 39.130 0.00 0.00 0.00 3.53
2195 2258 2.028748 CCAAGGGGCTTTTCTTGTGATG 60.029 50.000 0.00 0.00 38.83 3.07
2348 2411 7.925483 TCTTTTAATTATGTTGTTTGCAGTGCT 59.075 29.630 17.60 0.00 0.00 4.40
2349 2412 8.430801 TTTTAATTATGTTGTTTGCAGTGCTT 57.569 26.923 17.60 0.00 0.00 3.91
2374 2437 1.872313 GCAGCTAACATGAGCATCTCC 59.128 52.381 8.91 0.00 45.43 3.71
2388 2451 0.447801 ATCTCCGTTTGATTGCGTGC 59.552 50.000 0.00 0.00 0.00 5.34
2393 2456 3.290608 TTTGATTGCGTGCGCCCA 61.291 55.556 14.16 6.70 41.09 5.36
2485 2555 0.098905 TGCTCTAGCGAACACTAGCG 59.901 55.000 0.00 0.00 45.83 4.26
2540 2617 5.518812 TGACGAAATTTCACAGGACAATTG 58.481 37.500 17.99 3.24 0.00 2.32
2599 2676 7.327518 GTGTTAAAATTCAAATGGACTTACGGG 59.672 37.037 0.00 0.00 0.00 5.28
2601 2678 1.444836 TTCAAATGGACTTACGGGCG 58.555 50.000 0.00 0.00 0.00 6.13
2645 2722 6.894682 TGGATATAGCACACTGTTATTTGGA 58.105 36.000 0.00 0.00 0.00 3.53
2680 2757 7.398618 TCCAACAATTTTGGCCATCTAATTAGA 59.601 33.333 17.32 17.32 39.38 2.10
2811 2888 0.669318 TTACTTCCTTGTCAGGCGCG 60.669 55.000 0.00 0.00 40.58 6.86
3025 3102 2.175878 TTGTCTTCTTCAGCTCTGCC 57.824 50.000 0.00 0.00 0.00 4.85
3177 3254 0.107848 ATACTGGGCCGTTTTCCTCG 60.108 55.000 0.00 0.00 0.00 4.63
3286 3363 8.585881 ACTTCAGTTATGCTACAAAGAGAACTA 58.414 33.333 0.00 0.00 0.00 2.24
3336 3413 1.003718 CGTCCTTGGAGTTCACCCC 60.004 63.158 0.00 0.00 0.00 4.95
3456 3538 3.485877 GCCAAGTTCTTATGCTGCTTACG 60.486 47.826 0.00 0.00 0.00 3.18
3480 3562 6.093633 CGTTTCCCCCTTTTTATCTTGTAGAG 59.906 42.308 0.00 0.00 0.00 2.43
3488 3570 9.907229 CCCTTTTTATCTTGTAGAGAACCTTAT 57.093 33.333 0.00 0.00 38.06 1.73
3624 3706 3.809832 CCATAGAGCATCCTAACCGTTTG 59.190 47.826 0.00 0.00 33.66 2.93
3715 3797 4.127171 GCTGTGAAGTTCTTACTGGAACA 58.873 43.478 4.17 0.00 45.52 3.18
3776 3860 6.252015 CACTTATGCATGAATTCTTGTTTCGG 59.748 38.462 19.25 11.38 0.00 4.30
3856 3940 1.686052 ACACATCGCCCATTTTTGTGT 59.314 42.857 1.42 1.42 44.35 3.72
4317 4455 4.588528 TGCAAGGAAGGAAGCTTGTAATTT 59.411 37.500 2.10 0.00 0.00 1.82
4323 4461 5.648092 GGAAGGAAGCTTGTAATTTAGCAGA 59.352 40.000 2.10 0.00 39.85 4.26
4335 4473 8.492673 TGTAATTTAGCAGAAGGTTACAGATG 57.507 34.615 0.00 0.00 30.96 2.90
4507 4657 6.333168 TGGGTAGCAATTATAAGGGTTGGATA 59.667 38.462 0.00 0.00 0.00 2.59
4522 4672 4.202305 GGTTGGATATCTGGAGTCTTCTGG 60.202 50.000 2.05 0.00 0.00 3.86
4529 4679 0.035881 TGGAGTCTTCTGGCAAGCTG 59.964 55.000 0.00 0.00 0.00 4.24
4703 4865 5.404667 GGTTTCTACTTCTGGTTTGTAGTCG 59.595 44.000 0.00 0.00 36.16 4.18
4715 4877 4.056050 GTTTGTAGTCGTTGTCCAGTGAT 58.944 43.478 0.00 0.00 0.00 3.06
4736 4898 1.796151 CGTACGAACTGGCCGAGTA 59.204 57.895 10.44 0.72 33.09 2.59
4763 4925 7.177498 TCGCATCTGTTTCAATCATATACAC 57.823 36.000 0.00 0.00 0.00 2.90
4764 4926 6.760770 TCGCATCTGTTTCAATCATATACACA 59.239 34.615 0.00 0.00 0.00 3.72
4765 4927 7.442062 TCGCATCTGTTTCAATCATATACACAT 59.558 33.333 0.00 0.00 0.00 3.21
4766 4928 8.711457 CGCATCTGTTTCAATCATATACACATA 58.289 33.333 0.00 0.00 0.00 2.29
4829 4993 2.937149 CGTGGTTCGAGAGAGTATCAGA 59.063 50.000 0.00 0.00 43.69 3.27
4830 4994 3.001838 CGTGGTTCGAGAGAGTATCAGAG 59.998 52.174 0.00 0.00 43.69 3.35
4831 4995 2.946329 TGGTTCGAGAGAGTATCAGAGC 59.054 50.000 0.00 0.00 43.69 4.09
4832 4996 2.946329 GGTTCGAGAGAGTATCAGAGCA 59.054 50.000 0.00 0.00 43.69 4.26
4833 4997 3.568007 GGTTCGAGAGAGTATCAGAGCAT 59.432 47.826 0.00 0.00 43.69 3.79
4834 4998 4.320202 GGTTCGAGAGAGTATCAGAGCATC 60.320 50.000 0.00 0.00 43.69 3.91
4835 4999 3.407698 TCGAGAGAGTATCAGAGCATCC 58.592 50.000 0.00 0.00 37.82 3.51
4836 5000 3.145286 CGAGAGAGTATCAGAGCATCCA 58.855 50.000 0.00 0.00 37.82 3.41
4837 5001 3.058293 CGAGAGAGTATCAGAGCATCCAC 60.058 52.174 0.00 0.00 37.82 4.02
4838 5002 3.888323 GAGAGAGTATCAGAGCATCCACA 59.112 47.826 0.00 0.00 37.82 4.17
4839 5003 3.890756 AGAGAGTATCAGAGCATCCACAG 59.109 47.826 0.00 0.00 37.82 3.66
4840 5004 3.636300 GAGAGTATCAGAGCATCCACAGT 59.364 47.826 0.00 0.00 37.82 3.55
4841 5005 3.384146 AGAGTATCAGAGCATCCACAGTG 59.616 47.826 0.00 0.00 37.82 3.66
4842 5006 3.102972 AGTATCAGAGCATCCACAGTGT 58.897 45.455 0.00 0.00 33.66 3.55
4843 5007 2.398252 ATCAGAGCATCCACAGTGTG 57.602 50.000 16.70 16.70 33.66 3.82
4844 5008 1.051008 TCAGAGCATCCACAGTGTGT 58.949 50.000 21.48 2.60 33.66 3.72
4845 5009 1.001293 TCAGAGCATCCACAGTGTGTC 59.999 52.381 21.48 11.98 33.66 3.67
4846 5010 0.322975 AGAGCATCCACAGTGTGTCC 59.677 55.000 21.48 7.00 33.66 4.02
4847 5011 0.322975 GAGCATCCACAGTGTGTCCT 59.677 55.000 21.48 11.37 0.00 3.85
4848 5012 0.767375 AGCATCCACAGTGTGTCCTT 59.233 50.000 21.48 0.95 0.00 3.36
4849 5013 1.143684 AGCATCCACAGTGTGTCCTTT 59.856 47.619 21.48 2.08 0.00 3.11
4850 5014 1.956477 GCATCCACAGTGTGTCCTTTT 59.044 47.619 21.48 0.00 0.00 2.27
4851 5015 2.287788 GCATCCACAGTGTGTCCTTTTG 60.288 50.000 21.48 10.27 0.00 2.44
4852 5016 1.388547 TCCACAGTGTGTCCTTTTGC 58.611 50.000 21.48 0.00 0.00 3.68
4853 5017 1.064758 TCCACAGTGTGTCCTTTTGCT 60.065 47.619 21.48 0.00 0.00 3.91
4854 5018 1.066002 CCACAGTGTGTCCTTTTGCTG 59.934 52.381 21.48 0.00 0.00 4.41
4855 5019 0.740737 ACAGTGTGTCCTTTTGCTGC 59.259 50.000 0.00 0.00 0.00 5.25
4856 5020 0.031178 CAGTGTGTCCTTTTGCTGCC 59.969 55.000 0.00 0.00 0.00 4.85
4857 5021 0.106519 AGTGTGTCCTTTTGCTGCCT 60.107 50.000 0.00 0.00 0.00 4.75
4858 5022 0.312102 GTGTGTCCTTTTGCTGCCTC 59.688 55.000 0.00 0.00 0.00 4.70
4859 5023 0.183492 TGTGTCCTTTTGCTGCCTCT 59.817 50.000 0.00 0.00 0.00 3.69
4860 5024 1.419762 TGTGTCCTTTTGCTGCCTCTA 59.580 47.619 0.00 0.00 0.00 2.43
4861 5025 2.040278 TGTGTCCTTTTGCTGCCTCTAT 59.960 45.455 0.00 0.00 0.00 1.98
4862 5026 3.263170 TGTGTCCTTTTGCTGCCTCTATA 59.737 43.478 0.00 0.00 0.00 1.31
4863 5027 3.873952 GTGTCCTTTTGCTGCCTCTATAG 59.126 47.826 0.00 0.00 0.00 1.31
4864 5028 2.875317 GTCCTTTTGCTGCCTCTATAGC 59.125 50.000 0.00 0.00 40.29 2.97
4865 5029 2.774234 TCCTTTTGCTGCCTCTATAGCT 59.226 45.455 0.00 0.00 40.52 3.32
4866 5030 2.877168 CCTTTTGCTGCCTCTATAGCTG 59.123 50.000 0.00 0.00 40.52 4.24
4868 5032 4.691506 GCTGCCTCTATAGCTGCC 57.308 61.111 0.00 0.00 46.05 4.85
4869 5033 2.056985 GCTGCCTCTATAGCTGCCT 58.943 57.895 0.00 0.00 46.05 4.75
4870 5034 0.037419 GCTGCCTCTATAGCTGCCTC 60.037 60.000 0.00 0.69 46.05 4.70
4871 5035 1.631405 CTGCCTCTATAGCTGCCTCT 58.369 55.000 0.00 0.00 0.00 3.69
4872 5036 2.801483 CTGCCTCTATAGCTGCCTCTA 58.199 52.381 0.00 0.00 0.00 2.43
4873 5037 3.161067 CTGCCTCTATAGCTGCCTCTAA 58.839 50.000 0.00 0.00 0.00 2.10
4874 5038 3.161067 TGCCTCTATAGCTGCCTCTAAG 58.839 50.000 0.00 0.00 0.00 2.18
4875 5039 2.094234 GCCTCTATAGCTGCCTCTAAGC 60.094 54.545 0.00 0.00 41.15 3.09
4876 5040 2.495669 CCTCTATAGCTGCCTCTAAGCC 59.504 54.545 0.00 0.00 41.82 4.35
4877 5041 3.430453 CTCTATAGCTGCCTCTAAGCCT 58.570 50.000 0.00 0.00 41.82 4.58
4878 5042 3.831911 CTCTATAGCTGCCTCTAAGCCTT 59.168 47.826 0.00 0.00 41.82 4.35
4879 5043 4.227197 TCTATAGCTGCCTCTAAGCCTTT 58.773 43.478 0.00 0.00 41.82 3.11
4880 5044 5.394738 TCTATAGCTGCCTCTAAGCCTTTA 58.605 41.667 0.00 0.00 41.82 1.85
4881 5045 2.998316 AGCTGCCTCTAAGCCTTTAG 57.002 50.000 0.00 0.00 41.82 1.85
4882 5046 2.472029 AGCTGCCTCTAAGCCTTTAGA 58.528 47.619 0.00 0.00 42.25 2.10
4901 5065 2.421619 GAGGCTGCCTCTATACATTGC 58.578 52.381 35.51 10.86 46.41 3.56
4902 5066 1.770658 AGGCTGCCTCTATACATTGCA 59.229 47.619 17.22 0.00 0.00 4.08
4903 5067 1.876156 GGCTGCCTCTATACATTGCAC 59.124 52.381 12.43 0.00 0.00 4.57
4904 5068 2.564771 GCTGCCTCTATACATTGCACA 58.435 47.619 0.00 0.00 0.00 4.57
4905 5069 2.289002 GCTGCCTCTATACATTGCACAC 59.711 50.000 0.00 0.00 0.00 3.82
4906 5070 3.534554 CTGCCTCTATACATTGCACACA 58.465 45.455 0.00 0.00 0.00 3.72
4907 5071 3.534554 TGCCTCTATACATTGCACACAG 58.465 45.455 0.00 0.00 0.00 3.66
4908 5072 2.289002 GCCTCTATACATTGCACACAGC 59.711 50.000 0.00 0.00 45.96 4.40
4909 5073 3.801698 CCTCTATACATTGCACACAGCT 58.198 45.455 0.00 0.00 45.94 4.24
4910 5074 3.558829 CCTCTATACATTGCACACAGCTG 59.441 47.826 13.48 13.48 45.94 4.24
4911 5075 2.938451 TCTATACATTGCACACAGCTGC 59.062 45.455 15.27 0.04 45.94 5.25
4912 5076 0.813184 ATACATTGCACACAGCTGCC 59.187 50.000 15.27 0.09 45.94 4.85
4913 5077 0.250858 TACATTGCACACAGCTGCCT 60.251 50.000 15.27 0.00 45.94 4.75
4914 5078 1.211969 CATTGCACACAGCTGCCTC 59.788 57.895 15.27 1.01 45.94 4.70
4915 5079 1.074423 ATTGCACACAGCTGCCTCT 59.926 52.632 15.27 0.00 45.94 3.69
4916 5080 0.325933 ATTGCACACAGCTGCCTCTA 59.674 50.000 15.27 0.00 45.94 2.43
4917 5081 0.108396 TTGCACACAGCTGCCTCTAA 59.892 50.000 15.27 1.14 45.94 2.10
4918 5082 0.603707 TGCACACAGCTGCCTCTAAC 60.604 55.000 15.27 0.00 45.94 2.34
4919 5083 0.603707 GCACACAGCTGCCTCTAACA 60.604 55.000 15.27 0.00 41.15 2.41
4920 5084 1.882912 CACACAGCTGCCTCTAACAA 58.117 50.000 15.27 0.00 0.00 2.83
4921 5085 2.221169 CACACAGCTGCCTCTAACAAA 58.779 47.619 15.27 0.00 0.00 2.83
4922 5086 2.618241 CACACAGCTGCCTCTAACAAAA 59.382 45.455 15.27 0.00 0.00 2.44
4923 5087 3.066621 CACACAGCTGCCTCTAACAAAAA 59.933 43.478 15.27 0.00 0.00 1.94
4947 5111 4.496336 GGCATCGCCTCCAAGCCT 62.496 66.667 0.00 0.00 46.69 4.58
4948 5112 2.505982 GCATCGCCTCCAAGCCTA 59.494 61.111 0.00 0.00 0.00 3.93
4949 5113 1.596477 GCATCGCCTCCAAGCCTAG 60.596 63.158 0.00 0.00 0.00 3.02
4950 5114 2.032860 GCATCGCCTCCAAGCCTAGA 62.033 60.000 0.00 0.00 0.00 2.43
4951 5115 0.033228 CATCGCCTCCAAGCCTAGAG 59.967 60.000 0.00 0.00 0.00 2.43
4967 5131 3.584947 GAGGCTGCCTCCAAAGAAT 57.415 52.632 33.62 4.02 44.36 2.40
4968 5132 2.717639 GAGGCTGCCTCCAAAGAATA 57.282 50.000 33.62 0.00 44.36 1.75
4969 5133 3.004752 GAGGCTGCCTCCAAAGAATAA 57.995 47.619 33.62 0.00 44.36 1.40
4970 5134 3.356290 GAGGCTGCCTCCAAAGAATAAA 58.644 45.455 33.62 0.00 44.36 1.40
4971 5135 3.763897 GAGGCTGCCTCCAAAGAATAAAA 59.236 43.478 33.62 0.00 44.36 1.52
4972 5136 4.356436 AGGCTGCCTCCAAAGAATAAAAT 58.644 39.130 17.22 0.00 0.00 1.82
4973 5137 5.518865 AGGCTGCCTCCAAAGAATAAAATA 58.481 37.500 17.22 0.00 0.00 1.40
4974 5138 5.957774 AGGCTGCCTCCAAAGAATAAAATAA 59.042 36.000 17.22 0.00 0.00 1.40
4975 5139 6.612863 AGGCTGCCTCCAAAGAATAAAATAAT 59.387 34.615 17.22 0.00 0.00 1.28
4976 5140 7.784550 AGGCTGCCTCCAAAGAATAAAATAATA 59.215 33.333 17.22 0.00 0.00 0.98
4977 5141 8.588472 GGCTGCCTCCAAAGAATAAAATAATAT 58.412 33.333 12.43 0.00 0.00 1.28
4978 5142 9.987272 GCTGCCTCCAAAGAATAAAATAATATT 57.013 29.630 0.00 0.00 0.00 1.28
5001 5165 8.707938 ATTATTTAAAGATGGCAGTTGAAAGC 57.292 30.769 0.00 0.00 0.00 3.51
5002 5166 5.789643 TTTAAAGATGGCAGTTGAAAGCT 57.210 34.783 0.00 0.00 0.00 3.74
5003 5167 3.655276 AAAGATGGCAGTTGAAAGCTG 57.345 42.857 0.00 0.00 37.06 4.24
5004 5168 2.574006 AGATGGCAGTTGAAAGCTGA 57.426 45.000 0.00 0.00 36.12 4.26
5005 5169 2.867624 AGATGGCAGTTGAAAGCTGAA 58.132 42.857 0.00 0.00 36.12 3.02
5006 5170 2.555757 AGATGGCAGTTGAAAGCTGAAC 59.444 45.455 0.00 0.00 36.12 3.18
5007 5171 1.761449 TGGCAGTTGAAAGCTGAACA 58.239 45.000 0.00 0.00 36.12 3.18
5008 5172 1.405105 TGGCAGTTGAAAGCTGAACAC 59.595 47.619 0.00 0.00 36.12 3.32
5009 5173 1.405105 GGCAGTTGAAAGCTGAACACA 59.595 47.619 0.00 0.00 36.12 3.72
5010 5174 2.454055 GCAGTTGAAAGCTGAACACAC 58.546 47.619 0.00 0.00 36.12 3.82
5011 5175 2.796032 GCAGTTGAAAGCTGAACACACC 60.796 50.000 0.00 0.00 36.12 4.16
5012 5176 2.423185 CAGTTGAAAGCTGAACACACCA 59.577 45.455 0.00 0.00 36.12 4.17
5013 5177 2.684881 AGTTGAAAGCTGAACACACCAG 59.315 45.455 0.00 0.00 34.88 4.00
5018 5182 4.141144 CTGAACACACCAGCCGTT 57.859 55.556 0.00 0.00 0.00 4.44
5019 5183 1.648720 CTGAACACACCAGCCGTTG 59.351 57.895 0.00 0.00 0.00 4.10
5020 5184 2.331451 GAACACACCAGCCGTTGC 59.669 61.111 0.00 0.00 37.95 4.17
5021 5185 3.194272 GAACACACCAGCCGTTGCC 62.194 63.158 0.00 0.00 38.69 4.52
5022 5186 3.714487 AACACACCAGCCGTTGCCT 62.714 57.895 0.00 0.00 38.69 4.75
5023 5187 2.031919 CACACCAGCCGTTGCCTA 59.968 61.111 0.00 0.00 38.69 3.93
5024 5188 2.034879 CACACCAGCCGTTGCCTAG 61.035 63.158 0.00 0.00 38.69 3.02
5025 5189 3.127533 CACCAGCCGTTGCCTAGC 61.128 66.667 0.00 0.00 38.69 3.42
5026 5190 3.636231 ACCAGCCGTTGCCTAGCA 61.636 61.111 0.00 0.00 38.69 3.49
5027 5191 2.359850 CCAGCCGTTGCCTAGCAA 60.360 61.111 0.00 0.00 46.80 3.91
5035 5199 2.657297 TTGCCTAGCAAGCCAAAGG 58.343 52.632 0.00 2.34 43.99 3.11
5049 5213 3.757745 CCAAAGGCAACCGTTATACAG 57.242 47.619 0.00 0.00 37.17 2.74
5050 5214 3.078837 CCAAAGGCAACCGTTATACAGT 58.921 45.455 0.00 0.00 37.17 3.55
5051 5215 3.119990 CCAAAGGCAACCGTTATACAGTG 60.120 47.826 0.00 0.00 37.17 3.66
5052 5216 1.734163 AGGCAACCGTTATACAGTGC 58.266 50.000 0.00 0.00 37.17 4.40
5053 5217 1.002659 AGGCAACCGTTATACAGTGCA 59.997 47.619 0.00 0.00 37.17 4.57
5054 5218 1.807742 GGCAACCGTTATACAGTGCAA 59.192 47.619 0.00 0.00 0.00 4.08
5055 5219 2.226912 GGCAACCGTTATACAGTGCAAA 59.773 45.455 0.00 0.00 0.00 3.68
5056 5220 3.231160 GCAACCGTTATACAGTGCAAAC 58.769 45.455 0.00 0.00 0.00 2.93
5057 5221 3.058501 GCAACCGTTATACAGTGCAAACT 60.059 43.478 0.00 0.00 0.00 2.66
5058 5222 4.463209 CAACCGTTATACAGTGCAAACTG 58.537 43.478 4.36 4.36 43.03 3.16
5059 5223 3.071479 ACCGTTATACAGTGCAAACTGG 58.929 45.455 10.40 7.40 41.76 4.00
5060 5224 2.159572 CCGTTATACAGTGCAAACTGGC 60.160 50.000 10.40 0.00 41.76 4.85
5061 5225 2.482336 CGTTATACAGTGCAAACTGGCA 59.518 45.455 10.40 0.00 41.76 4.92
5062 5226 3.058570 CGTTATACAGTGCAAACTGGCAA 60.059 43.478 10.40 0.00 46.93 4.52
5063 5227 4.555708 CGTTATACAGTGCAAACTGGCAAA 60.556 41.667 10.40 0.00 46.93 3.68
5064 5228 3.648339 ATACAGTGCAAACTGGCAAAG 57.352 42.857 10.40 0.00 46.93 2.77
5065 5229 0.179103 ACAGTGCAAACTGGCAAAGC 60.179 50.000 10.40 0.00 46.93 3.51
5066 5230 0.103572 CAGTGCAAACTGGCAAAGCT 59.896 50.000 0.00 0.00 46.93 3.74
5067 5231 0.386838 AGTGCAAACTGGCAAAGCTC 59.613 50.000 0.00 0.00 46.93 4.09
5068 5232 0.102844 GTGCAAACTGGCAAAGCTCA 59.897 50.000 0.00 0.00 46.93 4.26
5069 5233 0.386476 TGCAAACTGGCAAAGCTCAG 59.614 50.000 0.00 0.00 41.65 3.35
5070 5234 0.386838 GCAAACTGGCAAAGCTCAGT 59.613 50.000 0.10 0.10 40.05 3.41
5071 5235 1.202452 GCAAACTGGCAAAGCTCAGTT 60.202 47.619 11.63 11.63 44.95 3.16
5073 5237 2.877043 AACTGGCAAAGCTCAGTTTG 57.123 45.000 11.63 2.45 42.61 2.93
5074 5238 1.767759 ACTGGCAAAGCTCAGTTTGT 58.232 45.000 0.10 0.00 36.97 2.83
5075 5239 2.102578 ACTGGCAAAGCTCAGTTTGTT 58.897 42.857 0.10 0.00 36.97 2.83
5076 5240 2.099756 ACTGGCAAAGCTCAGTTTGTTC 59.900 45.455 0.10 0.00 36.97 3.18
5077 5241 2.360165 CTGGCAAAGCTCAGTTTGTTCT 59.640 45.455 0.00 0.00 39.27 3.01
5078 5242 2.099592 TGGCAAAGCTCAGTTTGTTCTG 59.900 45.455 0.00 0.00 39.27 3.02
5079 5243 2.358898 GGCAAAGCTCAGTTTGTTCTGA 59.641 45.455 0.00 0.00 41.40 3.27
5088 5252 4.702831 TCAGTTTGTTCTGAGCATACACA 58.297 39.130 15.02 0.00 39.20 3.72
5089 5253 5.308014 TCAGTTTGTTCTGAGCATACACAT 58.692 37.500 15.02 0.00 39.20 3.21
5090 5254 5.409520 TCAGTTTGTTCTGAGCATACACATC 59.590 40.000 15.02 0.00 39.20 3.06
5091 5255 4.697352 AGTTTGTTCTGAGCATACACATCC 59.303 41.667 15.02 0.00 0.00 3.51
5092 5256 3.979101 TGTTCTGAGCATACACATCCA 57.021 42.857 0.00 0.00 0.00 3.41
5093 5257 4.284829 TGTTCTGAGCATACACATCCAA 57.715 40.909 0.00 0.00 0.00 3.53
5094 5258 4.847198 TGTTCTGAGCATACACATCCAAT 58.153 39.130 0.00 0.00 0.00 3.16
5095 5259 4.877823 TGTTCTGAGCATACACATCCAATC 59.122 41.667 0.00 0.00 0.00 2.67
5096 5260 4.077300 TCTGAGCATACACATCCAATCC 57.923 45.455 0.00 0.00 0.00 3.01
5097 5261 3.455543 TCTGAGCATACACATCCAATCCA 59.544 43.478 0.00 0.00 0.00 3.41
5098 5262 4.080413 TCTGAGCATACACATCCAATCCAA 60.080 41.667 0.00 0.00 0.00 3.53
5099 5263 4.795469 TGAGCATACACATCCAATCCAAT 58.205 39.130 0.00 0.00 0.00 3.16
5100 5264 5.939447 TGAGCATACACATCCAATCCAATA 58.061 37.500 0.00 0.00 0.00 1.90
5101 5265 5.764686 TGAGCATACACATCCAATCCAATAC 59.235 40.000 0.00 0.00 0.00 1.89
5102 5266 5.693961 AGCATACACATCCAATCCAATACA 58.306 37.500 0.00 0.00 0.00 2.29
5103 5267 6.128486 AGCATACACATCCAATCCAATACAA 58.872 36.000 0.00 0.00 0.00 2.41
5104 5268 6.039717 AGCATACACATCCAATCCAATACAAC 59.960 38.462 0.00 0.00 0.00 3.32
5105 5269 6.735694 GCATACACATCCAATCCAATACAACC 60.736 42.308 0.00 0.00 0.00 3.77
5106 5270 3.694072 ACACATCCAATCCAATACAACCG 59.306 43.478 0.00 0.00 0.00 4.44
5107 5271 3.694072 CACATCCAATCCAATACAACCGT 59.306 43.478 0.00 0.00 0.00 4.83
5108 5272 3.945285 ACATCCAATCCAATACAACCGTC 59.055 43.478 0.00 0.00 0.00 4.79
5109 5273 2.623535 TCCAATCCAATACAACCGTCG 58.376 47.619 0.00 0.00 0.00 5.12
5110 5274 1.063469 CCAATCCAATACAACCGTCGC 59.937 52.381 0.00 0.00 0.00 5.19
5111 5275 1.735018 CAATCCAATACAACCGTCGCA 59.265 47.619 0.00 0.00 0.00 5.10
5112 5276 2.325583 ATCCAATACAACCGTCGCAT 57.674 45.000 0.00 0.00 0.00 4.73
5113 5277 2.102070 TCCAATACAACCGTCGCATT 57.898 45.000 0.00 0.00 0.00 3.56
5114 5278 2.428491 TCCAATACAACCGTCGCATTT 58.572 42.857 0.00 0.00 0.00 2.32
5115 5279 3.597255 TCCAATACAACCGTCGCATTTA 58.403 40.909 0.00 0.00 0.00 1.40
5116 5280 4.001652 TCCAATACAACCGTCGCATTTAA 58.998 39.130 0.00 0.00 0.00 1.52
5117 5281 4.454847 TCCAATACAACCGTCGCATTTAAA 59.545 37.500 0.00 0.00 0.00 1.52
5118 5282 5.048921 TCCAATACAACCGTCGCATTTAAAA 60.049 36.000 0.00 0.00 0.00 1.52
5119 5283 5.629849 CCAATACAACCGTCGCATTTAAAAA 59.370 36.000 0.00 0.00 0.00 1.94
5120 5284 6.309251 CCAATACAACCGTCGCATTTAAAAAT 59.691 34.615 0.00 0.00 0.00 1.82
5121 5285 7.485277 CCAATACAACCGTCGCATTTAAAAATA 59.515 33.333 0.00 0.00 0.00 1.40
5122 5286 8.851416 CAATACAACCGTCGCATTTAAAAATAA 58.149 29.630 0.00 0.00 0.00 1.40
5123 5287 9.575783 AATACAACCGTCGCATTTAAAAATAAT 57.424 25.926 0.00 0.00 0.00 1.28
5125 5289 8.967552 ACAACCGTCGCATTTAAAAATAATAA 57.032 26.923 0.00 0.00 0.00 1.40
5126 5290 9.575783 ACAACCGTCGCATTTAAAAATAATAAT 57.424 25.926 0.00 0.00 0.00 1.28
5147 5311 9.660180 AATAATAAACAACAAATTATGGCCGTT 57.340 25.926 0.77 0.00 0.00 4.44
5149 5313 8.468720 AATAAACAACAAATTATGGCCGTTAC 57.531 30.769 0.77 0.00 0.00 2.50
5150 5314 5.455056 AACAACAAATTATGGCCGTTACA 57.545 34.783 0.77 0.00 0.00 2.41
5151 5315 5.455056 ACAACAAATTATGGCCGTTACAA 57.545 34.783 0.77 0.00 0.00 2.41
5152 5316 5.224135 ACAACAAATTATGGCCGTTACAAC 58.776 37.500 0.77 0.00 0.00 3.32
5153 5317 5.221263 ACAACAAATTATGGCCGTTACAACA 60.221 36.000 0.77 0.00 0.00 3.33
5154 5318 5.455056 ACAAATTATGGCCGTTACAACAA 57.545 34.783 0.77 0.00 0.00 2.83
5155 5319 5.465935 ACAAATTATGGCCGTTACAACAAG 58.534 37.500 0.77 0.00 0.00 3.16
5156 5320 5.010213 ACAAATTATGGCCGTTACAACAAGT 59.990 36.000 0.77 0.00 0.00 3.16
5157 5321 4.695217 ATTATGGCCGTTACAACAAGTG 57.305 40.909 0.77 0.00 0.00 3.16
5158 5322 1.975660 ATGGCCGTTACAACAAGTGT 58.024 45.000 0.00 0.00 44.82 3.55
5159 5323 1.018148 TGGCCGTTACAACAAGTGTG 58.982 50.000 0.00 0.00 41.89 3.82
5160 5324 1.018910 GGCCGTTACAACAAGTGTGT 58.981 50.000 0.00 0.00 41.89 3.72
5161 5325 1.268335 GGCCGTTACAACAAGTGTGTG 60.268 52.381 0.00 0.00 41.89 3.82
5162 5326 1.858399 GCCGTTACAACAAGTGTGTGC 60.858 52.381 0.00 0.00 41.89 4.57
5163 5327 1.398739 CCGTTACAACAAGTGTGTGCA 59.601 47.619 0.00 0.00 41.89 4.57
5164 5328 2.032799 CCGTTACAACAAGTGTGTGCAT 59.967 45.455 0.00 0.00 41.89 3.96
5165 5329 3.248841 CCGTTACAACAAGTGTGTGCATA 59.751 43.478 0.00 0.00 41.89 3.14
5166 5330 4.208355 CGTTACAACAAGTGTGTGCATAC 58.792 43.478 6.65 6.65 41.89 2.39
5167 5331 4.260415 CGTTACAACAAGTGTGTGCATACA 60.260 41.667 12.76 12.76 41.89 2.29
5202 5366 9.596308 TCAGTATATATACTAGGGCTTTGAACA 57.404 33.333 22.16 0.00 41.44 3.18
5210 5374 8.879427 ATACTAGGGCTTTGAACAATAAGTTT 57.121 30.769 0.00 0.00 41.51 2.66
5211 5375 6.981722 ACTAGGGCTTTGAACAATAAGTTTG 58.018 36.000 0.00 0.00 41.51 2.93
5212 5376 4.631131 AGGGCTTTGAACAATAAGTTTGC 58.369 39.130 0.00 0.00 41.51 3.68
5213 5377 4.100808 AGGGCTTTGAACAATAAGTTTGCA 59.899 37.500 0.00 0.00 41.51 4.08
5214 5378 4.211164 GGGCTTTGAACAATAAGTTTGCAC 59.789 41.667 0.00 0.00 41.51 4.57
5215 5379 4.808364 GGCTTTGAACAATAAGTTTGCACA 59.192 37.500 0.00 0.00 41.51 4.57
5216 5380 5.276820 GGCTTTGAACAATAAGTTTGCACAC 60.277 40.000 0.00 0.00 41.51 3.82
5217 5381 5.290643 GCTTTGAACAATAAGTTTGCACACA 59.709 36.000 5.67 0.00 41.51 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.014012 AGCAGCCCATTTAGTTAGGTAAAAA 58.986 36.000 0.00 0.00 0.00 1.94
45 46 5.576128 AGCAGCCCATTTAGTTAGGTAAAA 58.424 37.500 0.00 0.00 0.00 1.52
46 47 5.187621 AGCAGCCCATTTAGTTAGGTAAA 57.812 39.130 0.00 0.00 0.00 2.01
47 48 4.226394 TGAGCAGCCCATTTAGTTAGGTAA 59.774 41.667 0.00 0.00 0.00 2.85
48 49 3.778075 TGAGCAGCCCATTTAGTTAGGTA 59.222 43.478 0.00 0.00 0.00 3.08
49 50 2.576191 TGAGCAGCCCATTTAGTTAGGT 59.424 45.455 0.00 0.00 0.00 3.08
50 51 2.945668 GTGAGCAGCCCATTTAGTTAGG 59.054 50.000 0.00 0.00 0.00 2.69
51 52 3.375299 GTGTGAGCAGCCCATTTAGTTAG 59.625 47.826 0.00 0.00 0.00 2.34
52 53 3.343617 GTGTGAGCAGCCCATTTAGTTA 58.656 45.455 0.00 0.00 0.00 2.24
53 54 2.162681 GTGTGAGCAGCCCATTTAGTT 58.837 47.619 0.00 0.00 0.00 2.24
54 55 1.826385 GTGTGAGCAGCCCATTTAGT 58.174 50.000 0.00 0.00 0.00 2.24
55 56 0.729116 CGTGTGAGCAGCCCATTTAG 59.271 55.000 0.00 0.00 0.00 1.85
56 57 0.036164 ACGTGTGAGCAGCCCATTTA 59.964 50.000 0.00 0.00 0.00 1.40
57 58 1.228245 ACGTGTGAGCAGCCCATTT 60.228 52.632 0.00 0.00 0.00 2.32
58 59 1.968017 CACGTGTGAGCAGCCCATT 60.968 57.895 7.58 0.00 0.00 3.16
59 60 2.359107 CACGTGTGAGCAGCCCAT 60.359 61.111 7.58 0.00 0.00 4.00
60 61 4.624364 CCACGTGTGAGCAGCCCA 62.624 66.667 15.65 0.00 0.00 5.36
63 64 3.052082 ATGCCACGTGTGAGCAGC 61.052 61.111 20.01 13.27 39.08 5.25
64 65 2.865308 CATGCCACGTGTGAGCAG 59.135 61.111 20.01 10.64 39.08 4.24
65 66 2.447586 TAGCATGCCACGTGTGAGCA 62.448 55.000 18.17 18.17 39.66 4.26
66 67 1.741401 TAGCATGCCACGTGTGAGC 60.741 57.895 15.66 11.53 0.00 4.26
67 68 1.686566 CGTAGCATGCCACGTGTGAG 61.687 60.000 27.16 1.54 33.56 3.51
68 69 1.736282 CGTAGCATGCCACGTGTGA 60.736 57.895 27.16 0.00 33.56 3.58
69 70 1.083806 ATCGTAGCATGCCACGTGTG 61.084 55.000 32.07 10.10 39.18 3.82
70 71 0.391130 AATCGTAGCATGCCACGTGT 60.391 50.000 32.07 21.50 39.18 4.49
71 72 0.726827 AAATCGTAGCATGCCACGTG 59.273 50.000 32.07 9.08 39.18 4.49
72 73 1.448985 AAAATCGTAGCATGCCACGT 58.551 45.000 32.07 19.64 39.18 4.49
73 74 2.542766 AAAAATCGTAGCATGCCACG 57.457 45.000 29.09 29.09 39.48 4.94
165 166 9.974980 GAAATTAGGACAACCACTTGAAAATAA 57.025 29.630 0.00 0.00 38.94 1.40
197 205 2.031870 GAGGCAGGACAACCACTTTTT 58.968 47.619 0.00 0.00 38.94 1.94
204 212 2.034221 GGGTGAGGCAGGACAACC 59.966 66.667 0.00 0.00 36.71 3.77
210 218 2.124983 CGTGATGGGTGAGGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
222 230 6.083630 CACGAATCCAATTTTTACACGTGAT 58.916 36.000 25.01 9.25 46.94 3.06
297 305 3.066760 GCTGGGAATTTCGGTTCTATTGG 59.933 47.826 0.00 0.00 0.00 3.16
334 342 1.003718 CAGAGTGGGTCCGTTTCCC 60.004 63.158 0.00 0.00 44.81 3.97
350 358 2.259204 CATTTGTGTGGCGGGCAG 59.741 61.111 3.75 0.00 0.00 4.85
524 533 4.738998 TGGGGCTTGGCGTGGATG 62.739 66.667 0.00 0.00 0.00 3.51
525 534 4.740822 GTGGGGCTTGGCGTGGAT 62.741 66.667 0.00 0.00 0.00 3.41
545 554 3.808656 GTCTCGTCCCGTCCCGTC 61.809 72.222 0.00 0.00 0.00 4.79
549 558 2.435586 TCTCGTCTCGTCCCGTCC 60.436 66.667 0.00 0.00 0.00 4.79
561 570 3.063084 GGTGGAGCCTCGTCTCGT 61.063 66.667 0.00 0.00 33.98 4.18
579 588 2.521708 GTTGGTTGGTGGCTGCCT 60.522 61.111 21.03 0.00 0.00 4.75
581 590 2.430610 TTGGTTGGTTGGTGGCTGC 61.431 57.895 0.00 0.00 0.00 5.25
587 596 1.324005 CGGTTGGTTGGTTGGTTGGT 61.324 55.000 0.00 0.00 0.00 3.67
588 597 1.439644 CGGTTGGTTGGTTGGTTGG 59.560 57.895 0.00 0.00 0.00 3.77
589 598 1.439644 CCGGTTGGTTGGTTGGTTG 59.560 57.895 0.00 0.00 0.00 3.77
590 599 1.758906 CCCGGTTGGTTGGTTGGTT 60.759 57.895 0.00 0.00 0.00 3.67
962 995 3.622630 CCCTCGTTTTCTCTCTCTCCTA 58.377 50.000 0.00 0.00 0.00 2.94
1020 1067 1.451067 GAAGAGGACGAGTCGGAGAA 58.549 55.000 18.30 0.00 39.69 2.87
1498 1553 0.296349 GCGCGGACAAACAAACAAAC 59.704 50.000 8.83 0.00 0.00 2.93
1499 1554 1.134530 CGCGCGGACAAACAAACAAA 61.135 50.000 24.84 0.00 0.00 2.83
1502 1557 3.383601 GCGCGCGGACAAACAAAC 61.384 61.111 33.06 6.44 0.00 2.93
1503 1558 3.798639 CTGCGCGCGGACAAACAAA 62.799 57.895 35.90 7.23 0.00 2.83
1506 1561 4.430423 CTCTGCGCGCGGACAAAC 62.430 66.667 37.30 14.22 0.00 2.93
1645 1700 3.081061 TCCAACCACCGAATGATGAAAG 58.919 45.455 0.00 0.00 0.00 2.62
1674 1730 4.635223 TCGGGATAGCTCATCAAGATTTG 58.365 43.478 0.00 0.00 35.11 2.32
1684 1741 0.752009 AGCGAACTCGGGATAGCTCA 60.752 55.000 0.00 0.00 40.23 4.26
1740 1797 4.064388 CCAACAATCAAATTCCACCCAAC 58.936 43.478 0.00 0.00 0.00 3.77
1882 1940 1.066716 TCGACCAAATCCTTACCGGTG 60.067 52.381 19.93 0.00 0.00 4.94
1885 1943 2.671396 CTGTTCGACCAAATCCTTACCG 59.329 50.000 0.00 0.00 0.00 4.02
1889 1947 3.815809 TGTTCTGTTCGACCAAATCCTT 58.184 40.909 0.00 0.00 0.00 3.36
1899 1957 2.754472 CCACAGTGATGTTCTGTTCGA 58.246 47.619 0.62 0.00 43.14 3.71
1962 2024 1.970917 CTGCGCACGATCAGAAACCC 61.971 60.000 5.66 0.00 32.26 4.11
2176 2239 3.160269 CTCATCACAAGAAAAGCCCCTT 58.840 45.455 0.00 0.00 0.00 3.95
2195 2258 1.016653 GCTTCGAACCTGCACTCCTC 61.017 60.000 0.00 0.00 0.00 3.71
2349 2412 4.219070 AGATGCTCATGTTAGCTGCAAAAA 59.781 37.500 1.02 0.00 43.19 1.94
2362 2425 3.791122 GCAATCAAACGGAGATGCTCATG 60.791 47.826 0.00 0.00 38.55 3.07
2374 2437 3.165318 GGCGCACGCAATCAAACG 61.165 61.111 17.69 0.00 44.11 3.60
2496 2573 7.488792 TCGTCATATTTTGGAAGCATGAATTTG 59.511 33.333 0.00 0.00 0.00 2.32
2508 2585 7.175816 TCCTGTGAAATTTCGTCATATTTTGGA 59.824 33.333 13.34 12.30 0.00 3.53
2589 2666 2.813908 CTGCACGCCCGTAAGTCC 60.814 66.667 0.00 0.00 0.00 3.85
2599 2676 2.649331 TACTACTTTCTCCTGCACGC 57.351 50.000 0.00 0.00 0.00 5.34
2601 2678 5.488341 TCCAATTACTACTTTCTCCTGCAC 58.512 41.667 0.00 0.00 0.00 4.57
2645 2722 4.202315 GCCAAAATTGTTGGACCCTTACTT 60.202 41.667 9.95 0.00 42.06 2.24
2706 2783 8.325787 ACAGTGTGTTAGGATTATAACATCCAA 58.674 33.333 7.67 0.00 44.92 3.53
2720 2797 8.547967 ACATTAGTATTGAACAGTGTGTTAGG 57.452 34.615 0.00 0.00 41.28 2.69
2811 2888 1.467342 GTCCGTGTGGTTCCATTAAGC 59.533 52.381 0.00 0.00 36.30 3.09
3003 3080 3.126686 GGCAGAGCTGAAGAAGACAAATC 59.873 47.826 0.85 0.00 0.00 2.17
3025 3102 2.672961 TAGACAATGACTCCAAGCCG 57.327 50.000 0.00 0.00 0.00 5.52
3235 3312 6.735556 AGAATGTATTGGGAAAGGTCTTGAT 58.264 36.000 0.00 0.00 0.00 2.57
3286 3363 7.054751 GGTACTGTAATTCCAAATAGCTTCCT 58.945 38.462 0.00 0.00 0.00 3.36
3456 3538 7.173032 TCTCTACAAGATAAAAAGGGGGAAAC 58.827 38.462 0.00 0.00 0.00 2.78
3624 3706 3.118629 TGCAGTCAGAATCATCCACTACC 60.119 47.826 0.00 0.00 0.00 3.18
3753 3836 5.230726 GCCGAAACAAGAATTCATGCATAAG 59.769 40.000 10.49 0.00 0.00 1.73
3856 3940 9.653067 CACATGTATAGTTTTACGTGAACAAAA 57.347 29.630 15.90 4.94 40.15 2.44
3901 3987 8.100164 TGATCTTGTGATACCTACAAATCAACA 58.900 33.333 0.00 0.00 37.56 3.33
4317 4455 6.382859 TGGTATTCATCTGTAACCTTCTGCTA 59.617 38.462 0.00 0.00 0.00 3.49
4323 4461 5.435686 TGCTGGTATTCATCTGTAACCTT 57.564 39.130 0.00 0.00 0.00 3.50
4335 4473 8.854614 AAGGTCATAGATAAATGCTGGTATTC 57.145 34.615 0.00 0.00 0.00 1.75
4507 4657 1.065564 GCTTGCCAGAAGACTCCAGAT 60.066 52.381 0.00 0.00 0.00 2.90
4522 4672 2.923121 TGATAATCTGGTCCAGCTTGC 58.077 47.619 16.67 9.81 0.00 4.01
4529 4679 5.066505 GTCAACAACCATGATAATCTGGTCC 59.933 44.000 0.00 0.00 44.97 4.46
4535 4685 7.144722 TGACAAGTCAACAACCATGATAATC 57.855 36.000 0.00 0.00 36.53 1.75
4572 4723 2.976271 CAGTTGGTGCTTTGTTGGC 58.024 52.632 0.00 0.00 0.00 4.52
4703 4865 1.076332 GTACGCCATCACTGGACAAC 58.924 55.000 0.00 0.00 46.37 3.32
4715 4877 4.728102 CGGCCAGTTCGTACGCCA 62.728 66.667 11.24 0.00 41.71 5.69
4736 4898 8.839343 TGTATATGATTGAAACAGATGCGAAAT 58.161 29.630 0.00 0.00 0.00 2.17
4781 4943 6.974247 ACCCAGAGTTATATCCCATGGATAAT 59.026 38.462 15.22 6.39 46.18 1.28
4801 4963 2.738521 CTCGAACCACGCACCCAG 60.739 66.667 0.00 0.00 42.26 4.45
4829 4993 0.767375 AAGGACACACTGTGGATGCT 59.233 50.000 13.77 7.22 37.94 3.79
4830 4994 1.609208 AAAGGACACACTGTGGATGC 58.391 50.000 13.77 4.92 37.94 3.91
4831 4995 2.287788 GCAAAAGGACACACTGTGGATG 60.288 50.000 13.77 4.82 37.94 3.51
4832 4996 1.956477 GCAAAAGGACACACTGTGGAT 59.044 47.619 13.77 0.00 37.94 3.41
4833 4997 1.064758 AGCAAAAGGACACACTGTGGA 60.065 47.619 13.77 0.00 37.94 4.02
4834 4998 1.066002 CAGCAAAAGGACACACTGTGG 59.934 52.381 13.77 3.85 37.94 4.17
4835 4999 1.534595 GCAGCAAAAGGACACACTGTG 60.535 52.381 7.68 7.68 39.75 3.66
4836 5000 0.740737 GCAGCAAAAGGACACACTGT 59.259 50.000 0.00 0.00 0.00 3.55
4837 5001 0.031178 GGCAGCAAAAGGACACACTG 59.969 55.000 0.00 0.00 0.00 3.66
4838 5002 0.106519 AGGCAGCAAAAGGACACACT 60.107 50.000 0.00 0.00 0.00 3.55
4839 5003 0.312102 GAGGCAGCAAAAGGACACAC 59.688 55.000 0.00 0.00 0.00 3.82
4840 5004 0.183492 AGAGGCAGCAAAAGGACACA 59.817 50.000 0.00 0.00 0.00 3.72
4841 5005 2.185004 TAGAGGCAGCAAAAGGACAC 57.815 50.000 0.00 0.00 0.00 3.67
4842 5006 3.682718 GCTATAGAGGCAGCAAAAGGACA 60.683 47.826 3.21 0.00 37.73 4.02
4843 5007 2.875317 GCTATAGAGGCAGCAAAAGGAC 59.125 50.000 3.21 0.00 37.73 3.85
4844 5008 2.774234 AGCTATAGAGGCAGCAAAAGGA 59.226 45.455 3.21 0.00 40.36 3.36
4845 5009 2.877168 CAGCTATAGAGGCAGCAAAAGG 59.123 50.000 3.21 0.00 40.36 3.11
4846 5010 2.290093 GCAGCTATAGAGGCAGCAAAAG 59.710 50.000 3.21 0.00 40.92 2.27
4847 5011 2.292267 GCAGCTATAGAGGCAGCAAAA 58.708 47.619 3.21 0.00 40.92 2.44
4848 5012 1.475751 GGCAGCTATAGAGGCAGCAAA 60.476 52.381 15.28 0.00 42.58 3.68
4849 5013 0.107456 GGCAGCTATAGAGGCAGCAA 59.893 55.000 15.28 0.00 42.58 3.91
4850 5014 0.762082 AGGCAGCTATAGAGGCAGCA 60.762 55.000 17.42 0.00 42.58 4.41
4851 5015 0.037419 GAGGCAGCTATAGAGGCAGC 60.037 60.000 17.42 6.62 40.61 5.25
4852 5016 1.631405 AGAGGCAGCTATAGAGGCAG 58.369 55.000 17.42 0.00 0.00 4.85
4853 5017 2.980246 TAGAGGCAGCTATAGAGGCA 57.020 50.000 17.42 0.00 0.00 4.75
4854 5018 2.094234 GCTTAGAGGCAGCTATAGAGGC 60.094 54.545 3.21 7.47 34.15 4.70
4855 5019 2.495669 GGCTTAGAGGCAGCTATAGAGG 59.504 54.545 3.21 0.00 40.97 3.69
4856 5020 3.430453 AGGCTTAGAGGCAGCTATAGAG 58.570 50.000 3.21 0.00 44.19 2.43
4857 5021 3.534357 AGGCTTAGAGGCAGCTATAGA 57.466 47.619 3.21 0.00 44.19 1.98
4858 5022 4.615588 AAAGGCTTAGAGGCAGCTATAG 57.384 45.455 0.00 0.00 44.19 1.31
4859 5023 5.394738 TCTAAAGGCTTAGAGGCAGCTATA 58.605 41.667 0.00 0.00 44.19 1.31
4860 5024 4.227197 TCTAAAGGCTTAGAGGCAGCTAT 58.773 43.478 0.00 0.00 44.19 2.97
4861 5025 3.643237 TCTAAAGGCTTAGAGGCAGCTA 58.357 45.455 0.00 0.00 44.19 3.32
4862 5026 2.472029 TCTAAAGGCTTAGAGGCAGCT 58.528 47.619 0.00 0.00 44.19 4.24
4863 5027 2.990066 TCTAAAGGCTTAGAGGCAGC 57.010 50.000 0.00 0.00 44.19 5.25
4882 5046 1.770658 TGCAATGTATAGAGGCAGCCT 59.229 47.619 16.12 16.12 36.03 4.58
4883 5047 1.876156 GTGCAATGTATAGAGGCAGCC 59.124 52.381 1.84 1.84 34.78 4.85
4884 5048 2.289002 GTGTGCAATGTATAGAGGCAGC 59.711 50.000 0.00 0.00 34.78 5.25
4885 5049 3.534554 TGTGTGCAATGTATAGAGGCAG 58.465 45.455 0.00 0.00 34.78 4.85
4886 5050 3.534554 CTGTGTGCAATGTATAGAGGCA 58.465 45.455 0.00 0.00 0.00 4.75
4887 5051 2.289002 GCTGTGTGCAATGTATAGAGGC 59.711 50.000 0.00 0.00 42.31 4.70
4888 5052 3.558829 CAGCTGTGTGCAATGTATAGAGG 59.441 47.826 5.25 0.00 45.94 3.69
4889 5053 3.002042 GCAGCTGTGTGCAATGTATAGAG 59.998 47.826 16.64 0.00 45.94 2.43
4890 5054 2.938451 GCAGCTGTGTGCAATGTATAGA 59.062 45.455 16.64 0.00 45.94 1.98
4891 5055 2.032550 GGCAGCTGTGTGCAATGTATAG 59.967 50.000 16.64 0.00 45.93 1.31
4892 5056 2.016318 GGCAGCTGTGTGCAATGTATA 58.984 47.619 16.64 0.00 45.93 1.47
4893 5057 0.813184 GGCAGCTGTGTGCAATGTAT 59.187 50.000 16.64 0.00 45.93 2.29
4894 5058 0.250858 AGGCAGCTGTGTGCAATGTA 60.251 50.000 16.64 0.00 45.93 2.29
4895 5059 1.521450 GAGGCAGCTGTGTGCAATGT 61.521 55.000 16.64 0.00 45.93 2.71
4896 5060 1.211969 GAGGCAGCTGTGTGCAATG 59.788 57.895 16.64 0.00 45.93 2.82
4897 5061 0.325933 TAGAGGCAGCTGTGTGCAAT 59.674 50.000 16.64 0.00 45.93 3.56
4898 5062 0.108396 TTAGAGGCAGCTGTGTGCAA 59.892 50.000 16.64 1.89 45.93 4.08
4899 5063 0.603707 GTTAGAGGCAGCTGTGTGCA 60.604 55.000 16.64 0.00 45.93 4.57
4900 5064 0.603707 TGTTAGAGGCAGCTGTGTGC 60.604 55.000 16.64 0.48 43.19 4.57
4901 5065 1.882912 TTGTTAGAGGCAGCTGTGTG 58.117 50.000 16.64 0.00 0.00 3.82
4902 5066 2.638480 TTTGTTAGAGGCAGCTGTGT 57.362 45.000 16.64 2.11 0.00 3.72
4903 5067 3.988379 TTTTTGTTAGAGGCAGCTGTG 57.012 42.857 16.64 0.00 0.00 3.66
4931 5095 1.596477 CTAGGCTTGGAGGCGATGC 60.596 63.158 0.00 0.00 46.58 3.91
4932 5096 0.033228 CTCTAGGCTTGGAGGCGATG 59.967 60.000 0.78 0.00 46.58 3.84
4933 5097 1.118356 CCTCTAGGCTTGGAGGCGAT 61.118 60.000 15.40 0.00 43.99 4.58
4934 5098 1.758514 CCTCTAGGCTTGGAGGCGA 60.759 63.158 15.40 0.00 43.99 5.54
4935 5099 2.818132 CCTCTAGGCTTGGAGGCG 59.182 66.667 15.40 0.00 43.99 5.52
4950 5114 3.456380 TTTATTCTTTGGAGGCAGCCT 57.544 42.857 16.12 16.12 36.03 4.58
4951 5115 4.743057 ATTTTATTCTTTGGAGGCAGCC 57.257 40.909 1.84 1.84 0.00 4.85
4952 5116 9.987272 AATATTATTTTATTCTTTGGAGGCAGC 57.013 29.630 0.00 0.00 0.00 5.25
4975 5139 9.801873 GCTTTCAACTGCCATCTTTAAATAATA 57.198 29.630 0.00 0.00 0.00 0.98
4976 5140 8.534496 AGCTTTCAACTGCCATCTTTAAATAAT 58.466 29.630 0.00 0.00 0.00 1.28
4977 5141 7.814107 CAGCTTTCAACTGCCATCTTTAAATAA 59.186 33.333 0.00 0.00 0.00 1.40
4978 5142 7.176515 TCAGCTTTCAACTGCCATCTTTAAATA 59.823 33.333 0.00 0.00 35.04 1.40
4979 5143 6.015180 TCAGCTTTCAACTGCCATCTTTAAAT 60.015 34.615 0.00 0.00 35.04 1.40
4980 5144 5.301551 TCAGCTTTCAACTGCCATCTTTAAA 59.698 36.000 0.00 0.00 35.04 1.52
4981 5145 4.826733 TCAGCTTTCAACTGCCATCTTTAA 59.173 37.500 0.00 0.00 35.04 1.52
4982 5146 4.397420 TCAGCTTTCAACTGCCATCTTTA 58.603 39.130 0.00 0.00 35.04 1.85
4983 5147 3.225104 TCAGCTTTCAACTGCCATCTTT 58.775 40.909 0.00 0.00 35.04 2.52
4984 5148 2.867624 TCAGCTTTCAACTGCCATCTT 58.132 42.857 0.00 0.00 35.04 2.40
4985 5149 2.555757 GTTCAGCTTTCAACTGCCATCT 59.444 45.455 0.00 0.00 35.04 2.90
4986 5150 2.294233 TGTTCAGCTTTCAACTGCCATC 59.706 45.455 0.00 0.00 35.04 3.51
4987 5151 2.035066 GTGTTCAGCTTTCAACTGCCAT 59.965 45.455 0.00 0.00 35.04 4.40
4988 5152 1.405105 GTGTTCAGCTTTCAACTGCCA 59.595 47.619 0.00 0.00 35.04 4.92
4989 5153 1.405105 TGTGTTCAGCTTTCAACTGCC 59.595 47.619 0.00 0.00 35.04 4.85
4990 5154 2.454055 GTGTGTTCAGCTTTCAACTGC 58.546 47.619 0.00 0.00 35.04 4.40
4991 5155 2.423185 TGGTGTGTTCAGCTTTCAACTG 59.577 45.455 0.00 0.00 41.91 3.16
4992 5156 2.684881 CTGGTGTGTTCAGCTTTCAACT 59.315 45.455 0.00 0.00 41.91 3.16
4993 5157 3.070429 CTGGTGTGTTCAGCTTTCAAC 57.930 47.619 0.00 0.00 41.91 3.18
5001 5165 1.648720 CAACGGCTGGTGTGTTCAG 59.351 57.895 1.11 0.00 35.49 3.02
5002 5166 2.477176 GCAACGGCTGGTGTGTTCA 61.477 57.895 13.22 0.00 36.96 3.18
5003 5167 2.331451 GCAACGGCTGGTGTGTTC 59.669 61.111 13.22 0.00 36.96 3.18
5004 5168 2.332312 TAGGCAACGGCTGGTGTGTT 62.332 55.000 13.22 0.58 46.39 3.32
5005 5169 2.731691 CTAGGCAACGGCTGGTGTGT 62.732 60.000 13.22 2.02 46.39 3.72
5006 5170 2.031919 TAGGCAACGGCTGGTGTG 59.968 61.111 13.22 0.32 46.39 3.82
5007 5171 2.347490 CTAGGCAACGGCTGGTGT 59.653 61.111 13.22 0.00 46.39 4.16
5008 5172 3.127533 GCTAGGCAACGGCTGGTG 61.128 66.667 6.09 6.09 46.39 4.17
5009 5173 3.190738 TTGCTAGGCAACGGCTGGT 62.191 57.895 0.00 0.00 43.99 4.00
5010 5174 2.359850 TTGCTAGGCAACGGCTGG 60.360 61.111 0.00 0.00 43.99 4.85
5011 5175 3.044059 GCTTGCTAGGCAACGGCTG 62.044 63.158 0.51 0.00 43.99 4.85
5012 5176 2.747855 GCTTGCTAGGCAACGGCT 60.748 61.111 0.51 0.00 43.99 5.52
5013 5177 3.815396 GGCTTGCTAGGCAACGGC 61.815 66.667 16.52 4.67 43.99 5.68
5019 5183 2.888111 GCCTTTGGCTTGCTAGGC 59.112 61.111 14.70 14.70 46.69 3.93
5027 5191 6.861856 ACTGTATAACGGTTGCCTTTGGCT 62.862 45.833 10.09 0.00 39.17 4.75
5028 5192 4.672066 ACTGTATAACGGTTGCCTTTGGC 61.672 47.826 3.07 1.01 38.68 4.52
5029 5193 3.078837 ACTGTATAACGGTTGCCTTTGG 58.921 45.455 3.07 0.00 32.95 3.28
5030 5194 3.669557 GCACTGTATAACGGTTGCCTTTG 60.670 47.826 3.07 0.00 35.04 2.77
5031 5195 2.486592 GCACTGTATAACGGTTGCCTTT 59.513 45.455 3.07 0.00 35.04 3.11
5032 5196 2.081462 GCACTGTATAACGGTTGCCTT 58.919 47.619 3.07 0.00 35.04 4.35
5033 5197 1.002659 TGCACTGTATAACGGTTGCCT 59.997 47.619 3.07 0.00 35.04 4.75
5034 5198 1.444836 TGCACTGTATAACGGTTGCC 58.555 50.000 3.07 0.00 35.04 4.52
5035 5199 3.058501 AGTTTGCACTGTATAACGGTTGC 60.059 43.478 3.07 0.00 35.04 4.17
5036 5200 4.463209 CAGTTTGCACTGTATAACGGTTG 58.537 43.478 3.07 0.00 44.96 3.77
5037 5201 4.742438 CAGTTTGCACTGTATAACGGTT 57.258 40.909 0.00 0.00 44.96 4.44
5048 5212 0.386838 GAGCTTTGCCAGTTTGCACT 59.613 50.000 0.00 0.00 41.88 4.40
5049 5213 0.102844 TGAGCTTTGCCAGTTTGCAC 59.897 50.000 0.00 0.00 41.88 4.57
5050 5214 0.386476 CTGAGCTTTGCCAGTTTGCA 59.614 50.000 0.00 0.00 40.07 4.08
5051 5215 0.386838 ACTGAGCTTTGCCAGTTTGC 59.613 50.000 0.10 0.00 36.97 3.68
5052 5216 2.877043 AACTGAGCTTTGCCAGTTTG 57.123 45.000 11.63 0.00 42.61 2.93
5054 5218 2.102578 ACAAACTGAGCTTTGCCAGTT 58.897 42.857 11.63 11.63 44.95 3.16
5055 5219 1.767759 ACAAACTGAGCTTTGCCAGT 58.232 45.000 0.10 0.10 40.05 4.00
5056 5220 2.360165 AGAACAAACTGAGCTTTGCCAG 59.640 45.455 7.20 0.00 34.93 4.85
5057 5221 2.099592 CAGAACAAACTGAGCTTTGCCA 59.900 45.455 7.20 0.00 39.94 4.92
5058 5222 2.358898 TCAGAACAAACTGAGCTTTGCC 59.641 45.455 0.00 2.07 41.21 4.52
5059 5223 3.698029 TCAGAACAAACTGAGCTTTGC 57.302 42.857 0.00 0.00 41.21 3.68
5066 5230 4.702831 TGTGTATGCTCAGAACAAACTGA 58.297 39.130 0.00 0.00 43.39 3.41
5067 5231 5.391310 GGATGTGTATGCTCAGAACAAACTG 60.391 44.000 0.00 0.00 39.02 3.16
5068 5232 4.697352 GGATGTGTATGCTCAGAACAAACT 59.303 41.667 0.00 0.00 0.00 2.66
5069 5233 4.455533 TGGATGTGTATGCTCAGAACAAAC 59.544 41.667 0.00 0.00 0.00 2.93
5070 5234 4.650734 TGGATGTGTATGCTCAGAACAAA 58.349 39.130 0.00 0.00 0.00 2.83
5071 5235 4.284829 TGGATGTGTATGCTCAGAACAA 57.715 40.909 0.00 0.00 0.00 2.83
5072 5236 3.979101 TGGATGTGTATGCTCAGAACA 57.021 42.857 0.00 0.00 0.00 3.18
5073 5237 4.274459 GGATTGGATGTGTATGCTCAGAAC 59.726 45.833 0.00 0.00 0.00 3.01
5074 5238 4.080413 TGGATTGGATGTGTATGCTCAGAA 60.080 41.667 0.00 0.00 0.00 3.02
5075 5239 3.455543 TGGATTGGATGTGTATGCTCAGA 59.544 43.478 0.00 0.00 0.00 3.27
5076 5240 3.812262 TGGATTGGATGTGTATGCTCAG 58.188 45.455 0.00 0.00 0.00 3.35
5077 5241 3.929955 TGGATTGGATGTGTATGCTCA 57.070 42.857 0.00 0.00 0.00 4.26
5078 5242 5.764686 TGTATTGGATTGGATGTGTATGCTC 59.235 40.000 0.00 0.00 0.00 4.26
5079 5243 5.693961 TGTATTGGATTGGATGTGTATGCT 58.306 37.500 0.00 0.00 0.00 3.79
5080 5244 6.208644 GTTGTATTGGATTGGATGTGTATGC 58.791 40.000 0.00 0.00 0.00 3.14
5081 5245 6.513230 CGGTTGTATTGGATTGGATGTGTATG 60.513 42.308 0.00 0.00 0.00 2.39
5082 5246 5.530915 CGGTTGTATTGGATTGGATGTGTAT 59.469 40.000 0.00 0.00 0.00 2.29
5083 5247 4.878971 CGGTTGTATTGGATTGGATGTGTA 59.121 41.667 0.00 0.00 0.00 2.90
5084 5248 3.694072 CGGTTGTATTGGATTGGATGTGT 59.306 43.478 0.00 0.00 0.00 3.72
5085 5249 3.694072 ACGGTTGTATTGGATTGGATGTG 59.306 43.478 0.00 0.00 0.00 3.21
5086 5250 3.945285 GACGGTTGTATTGGATTGGATGT 59.055 43.478 0.00 0.00 0.00 3.06
5087 5251 3.002246 CGACGGTTGTATTGGATTGGATG 59.998 47.826 0.00 0.00 0.00 3.51
5088 5252 3.202906 CGACGGTTGTATTGGATTGGAT 58.797 45.455 0.00 0.00 0.00 3.41
5089 5253 2.623535 CGACGGTTGTATTGGATTGGA 58.376 47.619 0.00 0.00 0.00 3.53
5090 5254 1.063469 GCGACGGTTGTATTGGATTGG 59.937 52.381 0.00 0.00 0.00 3.16
5091 5255 1.735018 TGCGACGGTTGTATTGGATTG 59.265 47.619 0.00 0.00 0.00 2.67
5092 5256 2.102070 TGCGACGGTTGTATTGGATT 57.898 45.000 0.00 0.00 0.00 3.01
5093 5257 2.325583 ATGCGACGGTTGTATTGGAT 57.674 45.000 0.00 0.00 0.00 3.41
5094 5258 2.102070 AATGCGACGGTTGTATTGGA 57.898 45.000 10.43 0.00 0.00 3.53
5095 5259 2.911819 AAATGCGACGGTTGTATTGG 57.088 45.000 11.73 0.00 0.00 3.16
5096 5260 6.677027 TTTTTAAATGCGACGGTTGTATTG 57.323 33.333 11.73 0.00 0.00 1.90
5097 5261 8.967552 TTATTTTTAAATGCGACGGTTGTATT 57.032 26.923 5.94 5.94 0.00 1.89
5100 5264 8.967552 TTATTATTTTTAAATGCGACGGTTGT 57.032 26.923 0.00 0.00 0.00 3.32
5121 5285 9.660180 AACGGCCATAATTTGTTGTTTATTATT 57.340 25.926 2.24 0.00 0.00 1.40
5123 5287 9.570488 GTAACGGCCATAATTTGTTGTTTATTA 57.430 29.630 2.24 0.00 0.00 0.98
5124 5288 8.088981 TGTAACGGCCATAATTTGTTGTTTATT 58.911 29.630 2.24 0.00 0.00 1.40
5125 5289 7.603651 TGTAACGGCCATAATTTGTTGTTTAT 58.396 30.769 2.24 0.00 0.00 1.40
5126 5290 6.978338 TGTAACGGCCATAATTTGTTGTTTA 58.022 32.000 2.24 0.00 0.00 2.01
5127 5291 5.844004 TGTAACGGCCATAATTTGTTGTTT 58.156 33.333 2.24 0.00 0.00 2.83
5128 5292 5.455056 TGTAACGGCCATAATTTGTTGTT 57.545 34.783 2.24 0.00 0.00 2.83
5129 5293 5.221263 TGTTGTAACGGCCATAATTTGTTGT 60.221 36.000 2.24 0.00 0.00 3.32
5130 5294 5.223382 TGTTGTAACGGCCATAATTTGTTG 58.777 37.500 2.24 0.00 0.00 3.33
5131 5295 5.455056 TGTTGTAACGGCCATAATTTGTT 57.545 34.783 2.24 0.00 0.00 2.83
5132 5296 5.010213 ACTTGTTGTAACGGCCATAATTTGT 59.990 36.000 2.24 0.00 0.00 2.83
5133 5297 5.344665 CACTTGTTGTAACGGCCATAATTTG 59.655 40.000 2.24 0.00 0.00 2.32
5134 5298 5.010213 ACACTTGTTGTAACGGCCATAATTT 59.990 36.000 2.24 0.00 36.32 1.82
5135 5299 4.521256 ACACTTGTTGTAACGGCCATAATT 59.479 37.500 2.24 0.00 36.32 1.40
5136 5300 4.076394 ACACTTGTTGTAACGGCCATAAT 58.924 39.130 2.24 0.00 36.32 1.28
5137 5301 3.251245 CACACTTGTTGTAACGGCCATAA 59.749 43.478 2.24 0.00 35.67 1.90
5138 5302 2.809119 CACACTTGTTGTAACGGCCATA 59.191 45.455 2.24 0.00 35.67 2.74
5139 5303 1.606668 CACACTTGTTGTAACGGCCAT 59.393 47.619 2.24 0.00 35.67 4.40
5140 5304 1.018148 CACACTTGTTGTAACGGCCA 58.982 50.000 2.24 0.00 35.67 5.36
5141 5305 1.018910 ACACACTTGTTGTAACGGCC 58.981 50.000 0.00 0.00 35.67 6.13
5142 5306 1.858399 GCACACACTTGTTGTAACGGC 60.858 52.381 0.00 0.00 35.67 5.68
5143 5307 1.398739 TGCACACACTTGTTGTAACGG 59.601 47.619 0.00 0.00 35.67 4.44
5144 5308 2.815657 TGCACACACTTGTTGTAACG 57.184 45.000 0.00 0.00 35.67 3.18
5145 5309 5.163302 TGTATGCACACACTTGTTGTAAC 57.837 39.130 0.00 0.00 35.67 2.50
5176 5340 9.596308 TGTTCAAAGCCCTAGTATATATACTGA 57.404 33.333 28.32 15.94 43.10 3.41
5184 5348 9.969001 AAACTTATTGTTCAAAGCCCTAGTATA 57.031 29.630 0.00 0.00 38.03 1.47
5185 5349 8.739972 CAAACTTATTGTTCAAAGCCCTAGTAT 58.260 33.333 0.00 0.00 38.03 2.12
5186 5350 7.308951 GCAAACTTATTGTTCAAAGCCCTAGTA 60.309 37.037 0.00 0.00 38.03 1.82
5187 5351 6.516693 GCAAACTTATTGTTCAAAGCCCTAGT 60.517 38.462 0.00 0.00 38.03 2.57
5188 5352 5.863935 GCAAACTTATTGTTCAAAGCCCTAG 59.136 40.000 0.00 0.00 38.03 3.02
5189 5353 5.303078 TGCAAACTTATTGTTCAAAGCCCTA 59.697 36.000 0.00 0.00 38.03 3.53
5190 5354 4.100808 TGCAAACTTATTGTTCAAAGCCCT 59.899 37.500 0.00 0.00 38.03 5.19
5191 5355 4.211164 GTGCAAACTTATTGTTCAAAGCCC 59.789 41.667 0.00 0.00 38.03 5.19
5192 5356 4.808364 TGTGCAAACTTATTGTTCAAAGCC 59.192 37.500 0.00 0.00 38.03 4.35
5193 5357 5.290643 TGTGTGCAAACTTATTGTTCAAAGC 59.709 36.000 8.83 0.00 38.03 3.51
5194 5358 6.884096 TGTGTGCAAACTTATTGTTCAAAG 57.116 33.333 8.83 0.00 38.03 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.