Multiple sequence alignment - TraesCS1B01G265900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G265900 chr1B 100.000 3692 0 0 1 3692 466935456 466939147 0.000000e+00 6818
1 TraesCS1B01G265900 chr1B 89.718 496 12 11 414 875 466898675 466899165 6.820000e-167 597
2 TraesCS1B01G265900 chr1B 95.636 275 10 2 146 418 628508384 628508110 1.220000e-119 440
3 TraesCS1B01G265900 chr1B 95.273 275 11 2 146 418 642731963 642732237 5.660000e-118 435
4 TraesCS1B01G265900 chr1B 94.326 282 14 2 139 418 593922509 593922790 7.320000e-117 431
5 TraesCS1B01G265900 chr1B 95.402 87 2 1 430 516 466935517 466935601 1.790000e-28 137
6 TraesCS1B01G265900 chr1B 95.402 87 2 1 62 146 466935885 466935971 1.790000e-28 137
7 TraesCS1B01G265900 chr1B 86.232 138 3 3 1 122 466898614 466898751 6.430000e-28 135
8 TraesCS1B01G265900 chr1D 92.978 3318 101 49 425 3659 346662067 346665335 0.000000e+00 4715
9 TraesCS1B01G265900 chr1A 91.274 3117 143 56 660 3691 447004966 447008038 0.000000e+00 4130
10 TraesCS1B01G265900 chr1A 85.787 197 7 13 440 615 447004419 447004615 4.870000e-44 189
11 TraesCS1B01G265900 chr7B 95.307 277 11 2 144 418 586246424 586246700 4.380000e-119 438
12 TraesCS1B01G265900 chr7B 93.471 291 15 4 148 436 706693879 706693591 2.630000e-116 429
13 TraesCS1B01G265900 chr2A 94.964 278 12 2 143 418 621270024 621269747 5.660000e-118 435
14 TraesCS1B01G265900 chr2A 94.604 278 13 2 143 418 640268136 640267859 2.630000e-116 429
15 TraesCS1B01G265900 chr7A 94.928 276 12 2 145 418 696538845 696538570 7.320000e-117 431
16 TraesCS1B01G265900 chr3B 94.872 273 12 2 148 418 64297432 64297160 3.410000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G265900 chr1B 466935456 466939147 3691 False 2364.0 6818 96.934667 1 3692 3 chr1B.!!$F4 3691
1 TraesCS1B01G265900 chr1B 466898614 466899165 551 False 366.0 597 87.975000 1 875 2 chr1B.!!$F3 874
2 TraesCS1B01G265900 chr1D 346662067 346665335 3268 False 4715.0 4715 92.978000 425 3659 1 chr1D.!!$F1 3234
3 TraesCS1B01G265900 chr1A 447004419 447008038 3619 False 2159.5 4130 88.530500 440 3691 2 chr1A.!!$F1 3251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.035458 CTGGTCACAGTGGGAGGAAC 59.965 60.0 0.0 0.0 39.92 3.62 F
171 172 0.765510 GGTCACAGTGGGAGGAACTT 59.234 55.0 0.0 0.0 41.55 2.66 F
1206 1597 0.999406 CGATTCTCGATTTGTGCCGT 59.001 50.0 0.0 0.0 43.74 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1662 0.033699 AGAGAGAAATTGCAGGCCCC 60.034 55.000 0.00 0.0 0.00 5.80 R
1272 1677 1.132643 CGACGGACCGAGAGAGAAATT 59.867 52.381 23.38 0.0 0.00 1.82 R
3015 3447 2.058595 AAGGATCCCACCGACCGAG 61.059 63.158 8.55 0.0 34.73 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.734276 ACGCAAAAGAGAGAGAGGAC 57.266 50.000 0.00 0.00 0.00 3.85
64 65 1.565305 ACTCTCAATTCTCGCGCATC 58.435 50.000 8.75 0.00 0.00 3.91
65 66 0.857935 CTCTCAATTCTCGCGCATCC 59.142 55.000 8.75 0.00 0.00 3.51
66 67 0.175531 TCTCAATTCTCGCGCATCCA 59.824 50.000 8.75 0.00 0.00 3.41
67 68 1.009078 CTCAATTCTCGCGCATCCAA 58.991 50.000 8.75 0.00 0.00 3.53
68 69 1.004185 CTCAATTCTCGCGCATCCAAG 60.004 52.381 8.75 0.00 0.00 3.61
69 70 0.590732 CAATTCTCGCGCATCCAAGC 60.591 55.000 8.75 0.00 0.00 4.01
70 71 1.026182 AATTCTCGCGCATCCAAGCA 61.026 50.000 8.75 0.00 0.00 3.91
71 72 1.709147 ATTCTCGCGCATCCAAGCAC 61.709 55.000 8.75 0.00 0.00 4.40
72 73 3.869272 CTCGCGCATCCAAGCACC 61.869 66.667 8.75 0.00 0.00 5.01
76 77 4.776322 CGCATCCAAGCACCCCGA 62.776 66.667 0.00 0.00 0.00 5.14
77 78 2.825836 GCATCCAAGCACCCCGAG 60.826 66.667 0.00 0.00 0.00 4.63
78 79 2.989639 CATCCAAGCACCCCGAGA 59.010 61.111 0.00 0.00 0.00 4.04
79 80 1.450312 CATCCAAGCACCCCGAGAC 60.450 63.158 0.00 0.00 0.00 3.36
80 81 2.670148 ATCCAAGCACCCCGAGACC 61.670 63.158 0.00 0.00 0.00 3.85
81 82 4.760047 CCAAGCACCCCGAGACCG 62.760 72.222 0.00 0.00 0.00 4.79
82 83 4.003788 CAAGCACCCCGAGACCGT 62.004 66.667 0.00 0.00 0.00 4.83
83 84 3.692406 AAGCACCCCGAGACCGTC 61.692 66.667 0.00 0.00 0.00 4.79
86 87 3.307906 CACCCCGAGACCGTCCAA 61.308 66.667 0.00 0.00 0.00 3.53
87 88 2.524887 ACCCCGAGACCGTCCAAA 60.525 61.111 0.00 0.00 0.00 3.28
88 89 2.142104 ACCCCGAGACCGTCCAAAA 61.142 57.895 0.00 0.00 0.00 2.44
89 90 1.670083 CCCCGAGACCGTCCAAAAC 60.670 63.158 0.00 0.00 0.00 2.43
90 91 1.070105 CCCGAGACCGTCCAAAACA 59.930 57.895 0.00 0.00 0.00 2.83
91 92 0.533308 CCCGAGACCGTCCAAAACAA 60.533 55.000 0.00 0.00 0.00 2.83
92 93 1.519408 CCGAGACCGTCCAAAACAAT 58.481 50.000 0.00 0.00 0.00 2.71
93 94 2.613474 CCCGAGACCGTCCAAAACAATA 60.613 50.000 0.00 0.00 0.00 1.90
94 95 3.068560 CCGAGACCGTCCAAAACAATAA 58.931 45.455 0.00 0.00 0.00 1.40
95 96 3.499157 CCGAGACCGTCCAAAACAATAAA 59.501 43.478 0.00 0.00 0.00 1.40
96 97 4.155280 CCGAGACCGTCCAAAACAATAAAT 59.845 41.667 0.00 0.00 0.00 1.40
97 98 5.352016 CCGAGACCGTCCAAAACAATAAATA 59.648 40.000 0.00 0.00 0.00 1.40
98 99 6.128227 CCGAGACCGTCCAAAACAATAAATAA 60.128 38.462 0.00 0.00 0.00 1.40
99 100 7.299586 CGAGACCGTCCAAAACAATAAATAAA 58.700 34.615 0.00 0.00 0.00 1.40
100 101 7.804129 CGAGACCGTCCAAAACAATAAATAAAA 59.196 33.333 0.00 0.00 0.00 1.52
101 102 8.806177 AGACCGTCCAAAACAATAAATAAAAC 57.194 30.769 0.00 0.00 0.00 2.43
102 103 8.414778 AGACCGTCCAAAACAATAAATAAAACA 58.585 29.630 0.00 0.00 0.00 2.83
103 104 8.943909 ACCGTCCAAAACAATAAATAAAACAA 57.056 26.923 0.00 0.00 0.00 2.83
104 105 9.379791 ACCGTCCAAAACAATAAATAAAACAAA 57.620 25.926 0.00 0.00 0.00 2.83
105 106 9.639636 CCGTCCAAAACAATAAATAAAACAAAC 57.360 29.630 0.00 0.00 0.00 2.93
113 114 9.541143 AACAATAAATAAAACAAACAGACCAGG 57.459 29.630 0.00 0.00 0.00 4.45
114 115 8.919145 ACAATAAATAAAACAAACAGACCAGGA 58.081 29.630 0.00 0.00 0.00 3.86
115 116 9.410556 CAATAAATAAAACAAACAGACCAGGAG 57.589 33.333 0.00 0.00 0.00 3.69
116 117 8.934023 ATAAATAAAACAAACAGACCAGGAGA 57.066 30.769 0.00 0.00 0.00 3.71
117 118 6.884280 AATAAAACAAACAGACCAGGAGAG 57.116 37.500 0.00 0.00 0.00 3.20
118 119 4.503714 AAAACAAACAGACCAGGAGAGA 57.496 40.909 0.00 0.00 0.00 3.10
119 120 3.760580 AACAAACAGACCAGGAGAGAG 57.239 47.619 0.00 0.00 0.00 3.20
120 121 2.964209 ACAAACAGACCAGGAGAGAGA 58.036 47.619 0.00 0.00 0.00 3.10
121 122 2.896685 ACAAACAGACCAGGAGAGAGAG 59.103 50.000 0.00 0.00 0.00 3.20
122 123 2.230130 AACAGACCAGGAGAGAGAGG 57.770 55.000 0.00 0.00 0.00 3.69
123 124 1.377690 ACAGACCAGGAGAGAGAGGA 58.622 55.000 0.00 0.00 0.00 3.71
124 125 1.713647 ACAGACCAGGAGAGAGAGGAA 59.286 52.381 0.00 0.00 0.00 3.36
125 126 2.110899 ACAGACCAGGAGAGAGAGGAAA 59.889 50.000 0.00 0.00 0.00 3.13
126 127 3.169099 CAGACCAGGAGAGAGAGGAAAA 58.831 50.000 0.00 0.00 0.00 2.29
127 128 3.580458 CAGACCAGGAGAGAGAGGAAAAA 59.420 47.826 0.00 0.00 0.00 1.94
150 151 7.454260 AAATAACTATATTGGCAGCTTAGGC 57.546 36.000 0.00 0.00 32.06 3.93
151 152 6.784031 AATAACTATATTGGCAGCTTAGGCT 58.216 36.000 0.00 0.00 38.62 4.58
152 153 6.656693 AATAACTATATTGGCAGCTTAGGCTG 59.343 38.462 21.74 21.74 46.64 4.85
153 154 8.230480 AATAACTATATTGGCAGCTTAGGCTGG 61.230 40.741 26.16 10.76 45.56 4.85
161 162 2.846371 GCTTAGGCTGGTCACAGTG 58.154 57.895 0.00 0.00 46.62 3.66
162 163 0.674895 GCTTAGGCTGGTCACAGTGG 60.675 60.000 0.00 0.00 46.62 4.00
163 164 0.036010 CTTAGGCTGGTCACAGTGGG 60.036 60.000 0.00 0.00 46.62 4.61
164 165 0.472925 TTAGGCTGGTCACAGTGGGA 60.473 55.000 0.00 0.00 46.62 4.37
165 166 0.904865 TAGGCTGGTCACAGTGGGAG 60.905 60.000 0.00 0.00 46.62 4.30
166 167 2.348998 GCTGGTCACAGTGGGAGG 59.651 66.667 0.00 0.00 46.62 4.30
167 168 2.217038 GCTGGTCACAGTGGGAGGA 61.217 63.158 0.00 0.00 46.62 3.71
168 169 1.768684 GCTGGTCACAGTGGGAGGAA 61.769 60.000 0.00 0.00 46.62 3.36
169 170 0.035458 CTGGTCACAGTGGGAGGAAC 59.965 60.000 0.00 0.00 39.92 3.62
170 171 2.381143 CTGGTCACAGTGGGAGGAACT 61.381 57.143 0.00 0.00 40.34 3.01
171 172 0.765510 GGTCACAGTGGGAGGAACTT 59.234 55.000 0.00 0.00 41.55 2.66
172 173 1.975680 GGTCACAGTGGGAGGAACTTA 59.024 52.381 0.00 0.00 41.55 2.24
173 174 2.028020 GGTCACAGTGGGAGGAACTTAG 60.028 54.545 0.00 0.00 41.55 2.18
174 175 2.897969 GTCACAGTGGGAGGAACTTAGA 59.102 50.000 0.00 0.00 41.55 2.10
175 176 3.323979 GTCACAGTGGGAGGAACTTAGAA 59.676 47.826 0.00 0.00 41.55 2.10
176 177 3.578716 TCACAGTGGGAGGAACTTAGAAG 59.421 47.826 0.00 0.00 41.55 2.85
177 178 3.325135 CACAGTGGGAGGAACTTAGAAGT 59.675 47.826 0.00 0.00 41.55 3.01
178 179 4.527038 CACAGTGGGAGGAACTTAGAAGTA 59.473 45.833 0.00 0.00 41.55 2.24
179 180 5.011738 CACAGTGGGAGGAACTTAGAAGTAA 59.988 44.000 0.00 0.00 41.55 2.24
180 181 5.011840 ACAGTGGGAGGAACTTAGAAGTAAC 59.988 44.000 0.00 0.00 41.55 2.50
181 182 5.011738 CAGTGGGAGGAACTTAGAAGTAACA 59.988 44.000 0.00 0.00 41.55 2.41
182 183 5.785940 AGTGGGAGGAACTTAGAAGTAACAT 59.214 40.000 0.00 0.00 41.55 2.71
183 184 6.070710 AGTGGGAGGAACTTAGAAGTAACATC 60.071 42.308 0.00 1.41 41.55 3.06
184 185 5.783360 TGGGAGGAACTTAGAAGTAACATCA 59.217 40.000 12.59 1.06 41.55 3.07
185 186 6.107343 GGGAGGAACTTAGAAGTAACATCAC 58.893 44.000 12.59 7.90 41.55 3.06
186 187 6.295688 GGGAGGAACTTAGAAGTAACATCACA 60.296 42.308 12.59 0.00 41.55 3.58
187 188 6.590677 GGAGGAACTTAGAAGTAACATCACAC 59.409 42.308 12.59 0.00 41.55 3.82
188 189 7.062749 AGGAACTTAGAAGTAACATCACACA 57.937 36.000 0.00 0.00 38.57 3.72
189 190 6.929606 AGGAACTTAGAAGTAACATCACACAC 59.070 38.462 0.00 0.00 38.57 3.82
190 191 6.929606 GGAACTTAGAAGTAACATCACACACT 59.070 38.462 0.00 0.00 38.57 3.55
191 192 7.116519 GGAACTTAGAAGTAACATCACACACTC 59.883 40.741 0.00 0.00 38.57 3.51
192 193 6.456501 ACTTAGAAGTAACATCACACACTCC 58.543 40.000 0.00 0.00 37.52 3.85
193 194 4.955811 AGAAGTAACATCACACACTCCA 57.044 40.909 0.00 0.00 0.00 3.86
194 195 5.290493 AGAAGTAACATCACACACTCCAA 57.710 39.130 0.00 0.00 0.00 3.53
195 196 5.869579 AGAAGTAACATCACACACTCCAAT 58.130 37.500 0.00 0.00 0.00 3.16
196 197 7.004555 AGAAGTAACATCACACACTCCAATA 57.995 36.000 0.00 0.00 0.00 1.90
197 198 6.874134 AGAAGTAACATCACACACTCCAATAC 59.126 38.462 0.00 0.00 0.00 1.89
198 199 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
199 200 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
200 201 7.168219 AGTAACATCACACACTCCAATACAAT 58.832 34.615 0.00 0.00 0.00 2.71
201 202 6.899393 AACATCACACACTCCAATACAATT 57.101 33.333 0.00 0.00 0.00 2.32
202 203 6.899393 ACATCACACACTCCAATACAATTT 57.101 33.333 0.00 0.00 0.00 1.82
203 204 7.288810 ACATCACACACTCCAATACAATTTT 57.711 32.000 0.00 0.00 0.00 1.82
204 205 8.402798 ACATCACACACTCCAATACAATTTTA 57.597 30.769 0.00 0.00 0.00 1.52
205 206 8.296713 ACATCACACACTCCAATACAATTTTAC 58.703 33.333 0.00 0.00 0.00 2.01
206 207 8.514594 CATCACACACTCCAATACAATTTTACT 58.485 33.333 0.00 0.00 0.00 2.24
207 208 8.458573 TCACACACTCCAATACAATTTTACTT 57.541 30.769 0.00 0.00 0.00 2.24
208 209 9.562408 TCACACACTCCAATACAATTTTACTTA 57.438 29.630 0.00 0.00 0.00 2.24
235 236 9.591792 TGTGACACATATTTAATGAAGAGAGAG 57.408 33.333 3.56 0.00 0.00 3.20
236 237 9.039870 GTGACACATATTTAATGAAGAGAGAGG 57.960 37.037 0.00 0.00 0.00 3.69
237 238 8.762645 TGACACATATTTAATGAAGAGAGAGGT 58.237 33.333 0.00 0.00 0.00 3.85
238 239 8.954950 ACACATATTTAATGAAGAGAGAGGTG 57.045 34.615 0.00 0.00 0.00 4.00
239 240 7.497249 ACACATATTTAATGAAGAGAGAGGTGC 59.503 37.037 0.00 0.00 0.00 5.01
240 241 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
241 242 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
242 243 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
243 244 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
244 245 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
245 246 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
246 247 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
247 248 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
248 249 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
249 250 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
250 251 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
251 252 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
252 253 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
267 268 6.834959 GGTAACTAGCTAAATTACCGGAAC 57.165 41.667 22.05 7.47 38.76 3.62
268 269 6.340522 GGTAACTAGCTAAATTACCGGAACA 58.659 40.000 22.05 0.00 38.76 3.18
269 270 6.988580 GGTAACTAGCTAAATTACCGGAACAT 59.011 38.462 22.05 0.00 38.76 2.71
270 271 7.170489 GGTAACTAGCTAAATTACCGGAACATC 59.830 40.741 22.05 5.98 38.76 3.06
271 272 6.229936 ACTAGCTAAATTACCGGAACATCA 57.770 37.500 9.46 0.00 0.00 3.07
272 273 6.047231 ACTAGCTAAATTACCGGAACATCAC 58.953 40.000 9.46 0.00 0.00 3.06
273 274 4.839121 AGCTAAATTACCGGAACATCACA 58.161 39.130 9.46 0.00 0.00 3.58
274 275 5.437060 AGCTAAATTACCGGAACATCACAT 58.563 37.500 9.46 0.00 0.00 3.21
275 276 6.588204 AGCTAAATTACCGGAACATCACATA 58.412 36.000 9.46 0.00 0.00 2.29
276 277 6.482308 AGCTAAATTACCGGAACATCACATAC 59.518 38.462 9.46 0.00 0.00 2.39
277 278 6.482308 GCTAAATTACCGGAACATCACATACT 59.518 38.462 9.46 0.00 0.00 2.12
278 279 7.012044 GCTAAATTACCGGAACATCACATACTT 59.988 37.037 9.46 0.00 0.00 2.24
279 280 6.920569 AATTACCGGAACATCACATACTTC 57.079 37.500 9.46 0.00 0.00 3.01
280 281 3.973206 ACCGGAACATCACATACTTCA 57.027 42.857 9.46 0.00 0.00 3.02
281 282 4.280436 ACCGGAACATCACATACTTCAA 57.720 40.909 9.46 0.00 0.00 2.69
282 283 4.253685 ACCGGAACATCACATACTTCAAG 58.746 43.478 9.46 0.00 0.00 3.02
283 284 4.020573 ACCGGAACATCACATACTTCAAGA 60.021 41.667 9.46 0.00 0.00 3.02
284 285 4.935205 CCGGAACATCACATACTTCAAGAA 59.065 41.667 0.00 0.00 0.00 2.52
285 286 5.411361 CCGGAACATCACATACTTCAAGAAA 59.589 40.000 0.00 0.00 0.00 2.52
286 287 6.307155 CGGAACATCACATACTTCAAGAAAC 58.693 40.000 0.00 0.00 0.00 2.78
287 288 6.073276 CGGAACATCACATACTTCAAGAAACA 60.073 38.462 0.00 0.00 0.00 2.83
288 289 7.519809 CGGAACATCACATACTTCAAGAAACAA 60.520 37.037 0.00 0.00 0.00 2.83
289 290 8.299570 GGAACATCACATACTTCAAGAAACAAT 58.700 33.333 0.00 0.00 0.00 2.71
290 291 9.121517 GAACATCACATACTTCAAGAAACAATG 57.878 33.333 0.00 0.00 0.00 2.82
291 292 8.394971 ACATCACATACTTCAAGAAACAATGA 57.605 30.769 0.00 0.00 0.00 2.57
292 293 8.509690 ACATCACATACTTCAAGAAACAATGAG 58.490 33.333 0.00 0.00 0.00 2.90
293 294 8.509690 CATCACATACTTCAAGAAACAATGAGT 58.490 33.333 0.00 0.00 0.00 3.41
294 295 8.087982 TCACATACTTCAAGAAACAATGAGTC 57.912 34.615 0.00 0.00 0.00 3.36
295 296 7.933577 TCACATACTTCAAGAAACAATGAGTCT 59.066 33.333 0.00 0.00 0.00 3.24
296 297 9.208022 CACATACTTCAAGAAACAATGAGTCTA 57.792 33.333 0.00 0.00 0.00 2.59
297 298 9.950496 ACATACTTCAAGAAACAATGAGTCTAT 57.050 29.630 0.00 0.00 0.00 1.98
301 302 9.220767 ACTTCAAGAAACAATGAGTCTATAACC 57.779 33.333 0.00 0.00 0.00 2.85
302 303 9.442047 CTTCAAGAAACAATGAGTCTATAACCT 57.558 33.333 0.00 0.00 0.00 3.50
323 324 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
324 325 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
325 326 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
326 327 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
327 328 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
328 329 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
329 330 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
330 331 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
331 332 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
332 333 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
333 334 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
334 335 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
335 336 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
336 337 6.385649 TCGTTGCATGACACTACATAGATA 57.614 37.500 0.00 0.00 0.00 1.98
337 338 6.981722 TCGTTGCATGACACTACATAGATAT 58.018 36.000 0.00 0.00 0.00 1.63
338 339 7.433680 TCGTTGCATGACACTACATAGATATT 58.566 34.615 0.00 0.00 0.00 1.28
339 340 7.595130 TCGTTGCATGACACTACATAGATATTC 59.405 37.037 0.00 0.00 0.00 1.75
340 341 7.148738 CGTTGCATGACACTACATAGATATTCC 60.149 40.741 0.00 0.00 0.00 3.01
341 342 7.544804 TGCATGACACTACATAGATATTCCT 57.455 36.000 0.00 0.00 0.00 3.36
342 343 8.650143 TGCATGACACTACATAGATATTCCTA 57.350 34.615 0.00 0.00 0.00 2.94
343 344 8.523658 TGCATGACACTACATAGATATTCCTAC 58.476 37.037 0.00 0.00 0.00 3.18
344 345 7.976734 GCATGACACTACATAGATATTCCTACC 59.023 40.741 0.00 0.00 0.00 3.18
345 346 8.470805 CATGACACTACATAGATATTCCTACCC 58.529 40.741 0.00 0.00 0.00 3.69
346 347 7.532199 TGACACTACATAGATATTCCTACCCA 58.468 38.462 0.00 0.00 0.00 4.51
347 348 7.450634 TGACACTACATAGATATTCCTACCCAC 59.549 40.741 0.00 0.00 0.00 4.61
348 349 7.536625 ACACTACATAGATATTCCTACCCACT 58.463 38.462 0.00 0.00 0.00 4.00
349 350 8.676020 ACACTACATAGATATTCCTACCCACTA 58.324 37.037 0.00 0.00 0.00 2.74
350 351 9.702253 CACTACATAGATATTCCTACCCACTAT 57.298 37.037 0.00 0.00 0.00 2.12
351 352 9.702253 ACTACATAGATATTCCTACCCACTATG 57.298 37.037 0.00 0.00 40.45 2.23
352 353 9.922477 CTACATAGATATTCCTACCCACTATGA 57.078 37.037 1.97 0.00 39.00 2.15
353 354 8.830915 ACATAGATATTCCTACCCACTATGAG 57.169 38.462 1.97 0.00 39.00 2.90
354 355 7.841729 ACATAGATATTCCTACCCACTATGAGG 59.158 40.741 1.97 0.00 39.00 3.86
355 356 6.234404 AGATATTCCTACCCACTATGAGGT 57.766 41.667 0.00 0.00 40.31 3.85
356 357 7.358255 AGATATTCCTACCCACTATGAGGTA 57.642 40.000 0.00 0.00 37.59 3.08
375 376 8.749026 TGAGGTAGTAACATAGTCTAAGGAAG 57.251 38.462 0.00 0.00 0.00 3.46
376 377 8.334734 TGAGGTAGTAACATAGTCTAAGGAAGT 58.665 37.037 0.00 0.00 0.00 3.01
377 378 8.522542 AGGTAGTAACATAGTCTAAGGAAGTG 57.477 38.462 0.00 0.00 0.00 3.16
378 379 8.114743 AGGTAGTAACATAGTCTAAGGAAGTGT 58.885 37.037 0.00 0.00 0.00 3.55
379 380 8.189460 GGTAGTAACATAGTCTAAGGAAGTGTG 58.811 40.741 0.00 0.00 0.00 3.82
380 381 8.954350 GTAGTAACATAGTCTAAGGAAGTGTGA 58.046 37.037 0.00 0.00 0.00 3.58
381 382 8.418597 AGTAACATAGTCTAAGGAAGTGTGAA 57.581 34.615 0.00 0.00 0.00 3.18
382 383 8.524487 AGTAACATAGTCTAAGGAAGTGTGAAG 58.476 37.037 0.00 0.00 0.00 3.02
383 384 6.919775 ACATAGTCTAAGGAAGTGTGAAGT 57.080 37.500 0.00 0.00 0.00 3.01
384 385 7.304497 ACATAGTCTAAGGAAGTGTGAAGTT 57.696 36.000 0.00 0.00 0.00 2.66
385 386 8.418597 ACATAGTCTAAGGAAGTGTGAAGTTA 57.581 34.615 0.00 0.00 0.00 2.24
386 387 8.305317 ACATAGTCTAAGGAAGTGTGAAGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
387 388 6.980416 AGTCTAAGGAAGTGTGAAGTTACT 57.020 37.500 0.00 0.00 0.00 2.24
388 389 9.750783 ATAGTCTAAGGAAGTGTGAAGTTACTA 57.249 33.333 0.00 0.00 0.00 1.82
389 390 8.113173 AGTCTAAGGAAGTGTGAAGTTACTAG 57.887 38.462 0.00 0.00 0.00 2.57
390 391 6.807720 GTCTAAGGAAGTGTGAAGTTACTAGC 59.192 42.308 0.00 0.00 0.00 3.42
391 392 5.810080 AAGGAAGTGTGAAGTTACTAGCT 57.190 39.130 0.00 0.00 0.00 3.32
392 393 5.810080 AGGAAGTGTGAAGTTACTAGCTT 57.190 39.130 0.00 0.00 0.00 3.74
393 394 6.912951 AGGAAGTGTGAAGTTACTAGCTTA 57.087 37.500 0.00 0.00 0.00 3.09
394 395 7.483580 AGGAAGTGTGAAGTTACTAGCTTAT 57.516 36.000 0.00 0.00 0.00 1.73
395 396 7.324178 AGGAAGTGTGAAGTTACTAGCTTATG 58.676 38.462 0.00 0.00 0.00 1.90
396 397 7.038941 AGGAAGTGTGAAGTTACTAGCTTATGT 60.039 37.037 0.00 0.00 0.00 2.29
397 398 7.603024 GGAAGTGTGAAGTTACTAGCTTATGTT 59.397 37.037 0.00 0.00 0.00 2.71
398 399 8.904099 AAGTGTGAAGTTACTAGCTTATGTTT 57.096 30.769 0.00 0.00 0.00 2.83
399 400 8.904099 AGTGTGAAGTTACTAGCTTATGTTTT 57.096 30.769 0.00 0.00 0.00 2.43
400 401 9.338622 AGTGTGAAGTTACTAGCTTATGTTTTT 57.661 29.630 0.00 0.00 0.00 1.94
401 402 9.382244 GTGTGAAGTTACTAGCTTATGTTTTTG 57.618 33.333 0.00 0.00 0.00 2.44
402 403 8.073768 TGTGAAGTTACTAGCTTATGTTTTTGC 58.926 33.333 0.00 0.00 0.00 3.68
403 404 7.537649 GTGAAGTTACTAGCTTATGTTTTTGCC 59.462 37.037 0.00 0.00 0.00 4.52
404 405 6.510879 AGTTACTAGCTTATGTTTTTGCCC 57.489 37.500 0.00 0.00 0.00 5.36
405 406 6.007703 AGTTACTAGCTTATGTTTTTGCCCA 58.992 36.000 0.00 0.00 0.00 5.36
406 407 6.663523 AGTTACTAGCTTATGTTTTTGCCCAT 59.336 34.615 0.00 0.00 0.00 4.00
407 408 7.178451 AGTTACTAGCTTATGTTTTTGCCCATT 59.822 33.333 0.00 0.00 0.00 3.16
408 409 5.723295 ACTAGCTTATGTTTTTGCCCATTG 58.277 37.500 0.00 0.00 0.00 2.82
409 410 4.622260 AGCTTATGTTTTTGCCCATTGT 57.378 36.364 0.00 0.00 0.00 2.71
410 411 5.736951 AGCTTATGTTTTTGCCCATTGTA 57.263 34.783 0.00 0.00 0.00 2.41
411 412 6.107901 AGCTTATGTTTTTGCCCATTGTAA 57.892 33.333 0.00 0.00 0.00 2.41
412 413 5.931724 AGCTTATGTTTTTGCCCATTGTAAC 59.068 36.000 0.00 0.00 0.00 2.50
413 414 5.121611 GCTTATGTTTTTGCCCATTGTAACC 59.878 40.000 0.00 0.00 0.00 2.85
414 415 4.696479 ATGTTTTTGCCCATTGTAACCA 57.304 36.364 0.00 0.00 0.00 3.67
415 416 4.065321 TGTTTTTGCCCATTGTAACCAG 57.935 40.909 0.00 0.00 0.00 4.00
1206 1597 0.999406 CGATTCTCGATTTGTGCCGT 59.001 50.000 0.00 0.00 43.74 5.68
1256 1655 1.185618 TGAGTTGAGACGGTGGGAGG 61.186 60.000 0.00 0.00 0.00 4.30
1259 1658 3.168759 TTGAGACGGTGGGAGGGGA 62.169 63.158 0.00 0.00 0.00 4.81
1260 1659 2.041819 GAGACGGTGGGAGGGGAT 60.042 66.667 0.00 0.00 0.00 3.85
1261 1660 1.689582 GAGACGGTGGGAGGGGATT 60.690 63.158 0.00 0.00 0.00 3.01
1263 1662 1.077716 GACGGTGGGAGGGGATTTG 60.078 63.158 0.00 0.00 0.00 2.32
1272 1677 4.397010 GGGGATTTGGGGCCTGCA 62.397 66.667 0.84 0.00 0.00 4.41
1285 1690 1.012841 GCCTGCAATTTCTCTCTCGG 58.987 55.000 0.00 0.00 0.00 4.63
1428 1838 4.094830 TCATTCATCCACATCCATCCAG 57.905 45.455 0.00 0.00 0.00 3.86
1431 1841 0.184211 CATCCACATCCATCCAGCCA 59.816 55.000 0.00 0.00 0.00 4.75
1442 1852 4.935495 CCAGCCAGCCGTGTGTGT 62.935 66.667 0.00 0.00 0.00 3.72
1513 1925 1.352156 GCAAGACGCGACCGAAAGAT 61.352 55.000 15.93 0.00 38.29 2.40
1540 1952 2.434884 CATTGCGCTCCTGTCCGT 60.435 61.111 9.73 0.00 0.00 4.69
1593 2005 3.557908 TTCGTTTCGTTTCGTTGAGAC 57.442 42.857 0.00 0.00 0.00 3.36
1610 2027 6.504180 CGTTGAGACGTTTGATTGTGTTTTTC 60.504 38.462 0.00 0.00 44.08 2.29
1828 2245 0.961358 CGTCTCCTCCTTCGACCACT 60.961 60.000 0.00 0.00 0.00 4.00
1837 2254 1.202582 CCTTCGACCACTTCATCGACT 59.797 52.381 0.00 0.00 46.41 4.18
1838 2255 2.352814 CCTTCGACCACTTCATCGACTT 60.353 50.000 0.00 0.00 46.41 3.01
2052 2472 2.281761 AACCTCTGCCGCCAGTTG 60.282 61.111 0.00 0.00 40.09 3.16
2094 2514 0.822944 TGGTGTCCGTCAACTACCGA 60.823 55.000 0.00 0.00 34.34 4.69
2140 2560 3.422303 CGTACGACGACGGGTGGA 61.422 66.667 10.44 0.00 46.05 4.02
2720 3145 1.379443 AGCCCAGTCGTCGTGGATA 60.379 57.895 3.53 0.00 37.23 2.59
2724 3149 0.527817 CCAGTCGTCGTGGATAAGCC 60.528 60.000 0.00 0.00 37.23 4.35
2832 3257 2.267174 TCTCTTATACTACCGCCGCT 57.733 50.000 0.00 0.00 0.00 5.52
2902 3330 3.131933 GCTTCTGGCAAGTGATCTCTAGA 59.868 47.826 0.00 0.00 41.35 2.43
2929 3357 1.766461 GGGATCCCCATGTCCGTCT 60.766 63.158 21.42 0.00 44.65 4.18
3010 3442 0.391927 CCCACTAATTGTTCCGCCGA 60.392 55.000 0.00 0.00 0.00 5.54
3011 3443 1.663695 CCACTAATTGTTCCGCCGAT 58.336 50.000 0.00 0.00 0.00 4.18
3026 3463 4.570663 GATCGGCTCGGTCGGTGG 62.571 72.222 0.00 0.00 0.00 4.61
3073 3515 1.533753 CCATGTGTTTGCCTGGGGT 60.534 57.895 0.00 0.00 0.00 4.95
3096 3540 2.888212 AGACAAGAGAGAGAGTGCCTT 58.112 47.619 0.00 0.00 0.00 4.35
3171 3615 1.093159 CTTCATCCTCTGTTGCTGCC 58.907 55.000 0.00 0.00 0.00 4.85
3178 3622 3.667282 CTGTTGCTGCCGCTGCTT 61.667 61.111 21.13 0.00 38.71 3.91
3179 3623 2.281414 TGTTGCTGCCGCTGCTTA 60.281 55.556 21.13 8.34 38.71 3.09
3181 3625 1.243342 TGTTGCTGCCGCTGCTTATT 61.243 50.000 21.13 0.00 38.71 1.40
3182 3626 0.732571 GTTGCTGCCGCTGCTTATTA 59.267 50.000 21.13 0.00 38.71 0.98
3183 3627 1.334869 GTTGCTGCCGCTGCTTATTAT 59.665 47.619 21.13 0.00 38.71 1.28
3184 3628 1.229428 TGCTGCCGCTGCTTATTATC 58.771 50.000 21.13 0.00 38.71 1.75
3290 3734 4.569162 TGTGGTAGTTTCTTTCTTGTGTCG 59.431 41.667 0.00 0.00 0.00 4.35
3299 3748 1.466025 TTCTTGTGTCGGCTACGGGT 61.466 55.000 0.00 0.00 41.39 5.28
3300 3749 1.005394 CTTGTGTCGGCTACGGGTT 60.005 57.895 0.00 0.00 41.39 4.11
3301 3750 1.289109 CTTGTGTCGGCTACGGGTTG 61.289 60.000 0.00 0.00 41.39 3.77
3302 3751 2.433664 GTGTCGGCTACGGGTTGG 60.434 66.667 0.00 0.00 41.39 3.77
3303 3752 2.601067 TGTCGGCTACGGGTTGGA 60.601 61.111 0.00 0.00 41.39 3.53
3304 3753 1.985662 TGTCGGCTACGGGTTGGAT 60.986 57.895 0.00 0.00 41.39 3.41
3305 3754 1.219935 GTCGGCTACGGGTTGGATT 59.780 57.895 0.00 0.00 41.39 3.01
3306 3755 1.087771 GTCGGCTACGGGTTGGATTG 61.088 60.000 0.00 0.00 41.39 2.67
3307 3756 1.817941 CGGCTACGGGTTGGATTGG 60.818 63.158 0.00 0.00 36.18 3.16
3308 3757 1.605453 GGCTACGGGTTGGATTGGA 59.395 57.895 0.00 0.00 0.00 3.53
3369 3818 2.514902 CCGTGCATGTGAAAAATACGG 58.485 47.619 4.96 0.00 42.70 4.02
3472 3930 6.764379 AGGCTAGCAGTATAAATTCTCTTCC 58.236 40.000 18.24 0.00 0.00 3.46
3507 3966 7.944554 TGTATCTTTCTCTCCCTTTTTGATTGT 59.055 33.333 0.00 0.00 0.00 2.71
3587 4056 1.497278 CGTGTGCTTGGTTGATCCG 59.503 57.895 0.00 0.00 39.52 4.18
3655 4124 6.935208 AGAATGTGGTACTGGTAAAAGAAGAC 59.065 38.462 0.00 0.00 0.00 3.01
3691 4160 8.512966 TTTCGAACCAATTATGTTGGATATGA 57.487 30.769 16.06 5.82 42.06 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.667668 CGCGAGAATTGAGAGTTCCTTTTG 60.668 45.833 0.00 0.00 0.00 2.44
50 51 0.590732 GCTTGGATGCGCGAGAATTG 60.591 55.000 12.10 0.00 0.00 2.32
64 65 4.760047 CGGTCTCGGGGTGCTTGG 62.760 72.222 0.00 0.00 0.00 3.61
65 66 3.934391 GACGGTCTCGGGGTGCTTG 62.934 68.421 0.00 0.00 41.39 4.01
66 67 3.692406 GACGGTCTCGGGGTGCTT 61.692 66.667 0.00 0.00 41.39 3.91
69 70 2.386064 TTTTGGACGGTCTCGGGGTG 62.386 60.000 8.23 0.00 41.39 4.61
70 71 2.142104 TTTTGGACGGTCTCGGGGT 61.142 57.895 8.23 0.00 41.39 4.95
71 72 1.670083 GTTTTGGACGGTCTCGGGG 60.670 63.158 8.23 0.00 41.39 5.73
72 73 0.533308 TTGTTTTGGACGGTCTCGGG 60.533 55.000 8.23 0.00 41.39 5.14
73 74 1.519408 ATTGTTTTGGACGGTCTCGG 58.481 50.000 8.23 0.00 41.39 4.63
74 75 4.735662 TTTATTGTTTTGGACGGTCTCG 57.264 40.909 8.23 0.00 43.02 4.04
75 76 8.908678 GTTTTATTTATTGTTTTGGACGGTCTC 58.091 33.333 8.23 0.00 0.00 3.36
76 77 8.414778 TGTTTTATTTATTGTTTTGGACGGTCT 58.585 29.630 8.23 0.00 0.00 3.85
77 78 8.576936 TGTTTTATTTATTGTTTTGGACGGTC 57.423 30.769 0.00 0.00 0.00 4.79
78 79 8.943909 TTGTTTTATTTATTGTTTTGGACGGT 57.056 26.923 0.00 0.00 0.00 4.83
79 80 9.639636 GTTTGTTTTATTTATTGTTTTGGACGG 57.360 29.630 0.00 0.00 0.00 4.79
87 88 9.541143 CCTGGTCTGTTTGTTTTATTTATTGTT 57.459 29.630 0.00 0.00 0.00 2.83
88 89 8.919145 TCCTGGTCTGTTTGTTTTATTTATTGT 58.081 29.630 0.00 0.00 0.00 2.71
89 90 9.410556 CTCCTGGTCTGTTTGTTTTATTTATTG 57.589 33.333 0.00 0.00 0.00 1.90
90 91 9.362151 TCTCCTGGTCTGTTTGTTTTATTTATT 57.638 29.630 0.00 0.00 0.00 1.40
91 92 8.934023 TCTCCTGGTCTGTTTGTTTTATTTAT 57.066 30.769 0.00 0.00 0.00 1.40
92 93 8.215050 TCTCTCCTGGTCTGTTTGTTTTATTTA 58.785 33.333 0.00 0.00 0.00 1.40
93 94 7.060421 TCTCTCCTGGTCTGTTTGTTTTATTT 58.940 34.615 0.00 0.00 0.00 1.40
94 95 6.601332 TCTCTCCTGGTCTGTTTGTTTTATT 58.399 36.000 0.00 0.00 0.00 1.40
95 96 6.043243 TCTCTCTCCTGGTCTGTTTGTTTTAT 59.957 38.462 0.00 0.00 0.00 1.40
96 97 5.365605 TCTCTCTCCTGGTCTGTTTGTTTTA 59.634 40.000 0.00 0.00 0.00 1.52
97 98 4.164221 TCTCTCTCCTGGTCTGTTTGTTTT 59.836 41.667 0.00 0.00 0.00 2.43
98 99 3.711704 TCTCTCTCCTGGTCTGTTTGTTT 59.288 43.478 0.00 0.00 0.00 2.83
99 100 3.309296 TCTCTCTCCTGGTCTGTTTGTT 58.691 45.455 0.00 0.00 0.00 2.83
100 101 2.896685 CTCTCTCTCCTGGTCTGTTTGT 59.103 50.000 0.00 0.00 0.00 2.83
101 102 2.233431 CCTCTCTCTCCTGGTCTGTTTG 59.767 54.545 0.00 0.00 0.00 2.93
102 103 2.110899 TCCTCTCTCTCCTGGTCTGTTT 59.889 50.000 0.00 0.00 0.00 2.83
103 104 1.713647 TCCTCTCTCTCCTGGTCTGTT 59.286 52.381 0.00 0.00 0.00 3.16
104 105 1.377690 TCCTCTCTCTCCTGGTCTGT 58.622 55.000 0.00 0.00 0.00 3.41
105 106 2.523325 TTCCTCTCTCTCCTGGTCTG 57.477 55.000 0.00 0.00 0.00 3.51
106 107 3.551635 TTTTCCTCTCTCTCCTGGTCT 57.448 47.619 0.00 0.00 0.00 3.85
124 125 8.360390 GCCTAAGCTGCCAATATAGTTATTTTT 58.640 33.333 0.00 0.00 35.50 1.94
125 126 7.886338 GCCTAAGCTGCCAATATAGTTATTTT 58.114 34.615 0.00 0.00 35.50 1.82
126 127 7.454260 GCCTAAGCTGCCAATATAGTTATTT 57.546 36.000 0.00 0.00 35.50 1.40
143 144 0.674895 CCACTGTGACCAGCCTAAGC 60.675 60.000 9.86 0.00 42.81 3.09
144 145 0.036010 CCCACTGTGACCAGCCTAAG 60.036 60.000 9.86 0.00 42.81 2.18
145 146 0.472925 TCCCACTGTGACCAGCCTAA 60.473 55.000 9.86 0.00 42.81 2.69
146 147 0.904865 CTCCCACTGTGACCAGCCTA 60.905 60.000 9.86 0.00 42.81 3.93
147 148 2.122413 TCCCACTGTGACCAGCCT 60.122 61.111 9.86 0.00 42.81 4.58
148 149 2.348998 CTCCCACTGTGACCAGCC 59.651 66.667 9.86 0.00 42.81 4.85
149 150 1.768684 TTCCTCCCACTGTGACCAGC 61.769 60.000 9.86 0.00 42.81 4.85
150 151 0.035458 GTTCCTCCCACTGTGACCAG 59.965 60.000 9.86 1.73 44.68 4.00
151 152 0.399949 AGTTCCTCCCACTGTGACCA 60.400 55.000 9.86 0.00 0.00 4.02
152 153 0.765510 AAGTTCCTCCCACTGTGACC 59.234 55.000 9.86 0.00 0.00 4.02
153 154 2.897969 TCTAAGTTCCTCCCACTGTGAC 59.102 50.000 9.86 0.00 0.00 3.67
154 155 3.254093 TCTAAGTTCCTCCCACTGTGA 57.746 47.619 9.86 0.00 0.00 3.58
155 156 3.325135 ACTTCTAAGTTCCTCCCACTGTG 59.675 47.826 0.00 0.00 35.21 3.66
156 157 3.588569 ACTTCTAAGTTCCTCCCACTGT 58.411 45.455 0.00 0.00 35.21 3.55
157 158 5.011738 TGTTACTTCTAAGTTCCTCCCACTG 59.988 44.000 0.00 0.00 40.37 3.66
158 159 5.152934 TGTTACTTCTAAGTTCCTCCCACT 58.847 41.667 0.00 0.00 40.37 4.00
159 160 5.479124 TGTTACTTCTAAGTTCCTCCCAC 57.521 43.478 0.00 0.00 40.37 4.61
160 161 5.783360 TGATGTTACTTCTAAGTTCCTCCCA 59.217 40.000 0.00 0.00 40.37 4.37
161 162 6.107343 GTGATGTTACTTCTAAGTTCCTCCC 58.893 44.000 0.00 0.00 40.37 4.30
162 163 6.590677 GTGTGATGTTACTTCTAAGTTCCTCC 59.409 42.308 0.00 0.00 40.37 4.30
163 164 7.116519 GTGTGTGATGTTACTTCTAAGTTCCTC 59.883 40.741 0.00 0.01 40.37 3.71
164 165 6.929606 GTGTGTGATGTTACTTCTAAGTTCCT 59.070 38.462 0.00 0.00 40.37 3.36
165 166 6.929606 AGTGTGTGATGTTACTTCTAAGTTCC 59.070 38.462 0.00 0.00 40.37 3.62
166 167 7.116519 GGAGTGTGTGATGTTACTTCTAAGTTC 59.883 40.741 0.00 0.00 40.37 3.01
167 168 6.929606 GGAGTGTGTGATGTTACTTCTAAGTT 59.070 38.462 0.00 0.00 40.37 2.66
168 169 6.041637 TGGAGTGTGTGATGTTACTTCTAAGT 59.958 38.462 0.39 0.39 42.91 2.24
169 170 6.455647 TGGAGTGTGTGATGTTACTTCTAAG 58.544 40.000 0.17 0.00 0.00 2.18
170 171 6.413783 TGGAGTGTGTGATGTTACTTCTAA 57.586 37.500 0.17 0.00 0.00 2.10
171 172 6.413783 TTGGAGTGTGTGATGTTACTTCTA 57.586 37.500 0.17 0.00 0.00 2.10
172 173 4.955811 TGGAGTGTGTGATGTTACTTCT 57.044 40.909 0.17 0.00 0.00 2.85
173 174 6.649141 TGTATTGGAGTGTGTGATGTTACTTC 59.351 38.462 0.00 0.00 0.00 3.01
174 175 6.530120 TGTATTGGAGTGTGTGATGTTACTT 58.470 36.000 0.00 0.00 0.00 2.24
175 176 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
176 177 6.795098 TTGTATTGGAGTGTGTGATGTTAC 57.205 37.500 0.00 0.00 0.00 2.50
177 178 7.994425 AATTGTATTGGAGTGTGTGATGTTA 57.006 32.000 0.00 0.00 0.00 2.41
178 179 6.899393 AATTGTATTGGAGTGTGTGATGTT 57.101 33.333 0.00 0.00 0.00 2.71
179 180 6.899393 AAATTGTATTGGAGTGTGTGATGT 57.101 33.333 0.00 0.00 0.00 3.06
180 181 8.514594 AGTAAAATTGTATTGGAGTGTGTGATG 58.485 33.333 0.00 0.00 0.00 3.07
181 182 8.635765 AGTAAAATTGTATTGGAGTGTGTGAT 57.364 30.769 0.00 0.00 0.00 3.06
182 183 8.458573 AAGTAAAATTGTATTGGAGTGTGTGA 57.541 30.769 0.00 0.00 0.00 3.58
209 210 9.591792 CTCTCTCTTCATTAAATATGTGTCACA 57.408 33.333 8.40 8.40 0.00 3.58
210 211 9.039870 CCTCTCTCTTCATTAAATATGTGTCAC 57.960 37.037 0.00 0.00 0.00 3.67
211 212 8.762645 ACCTCTCTCTTCATTAAATATGTGTCA 58.237 33.333 0.00 0.00 0.00 3.58
212 213 9.039870 CACCTCTCTCTTCATTAAATATGTGTC 57.960 37.037 0.00 0.00 0.00 3.67
213 214 7.497249 GCACCTCTCTCTTCATTAAATATGTGT 59.503 37.037 0.00 0.00 0.00 3.72
214 215 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
215 216 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
216 217 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
217 218 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
218 219 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
219 220 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
220 221 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
221 222 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
222 223 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
223 224 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
224 225 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
225 226 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
226 227 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
227 228 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
228 229 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
229 230 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
230 231 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
231 232 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
232 233 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
233 234 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
234 235 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
235 236 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
236 237 6.496338 AATTTAGCTAGTTACCACAAGCAC 57.504 37.500 0.00 0.00 37.44 4.40
237 238 6.596497 GGTAATTTAGCTAGTTACCACAAGCA 59.404 38.462 28.12 0.00 44.24 3.91
238 239 6.238022 CGGTAATTTAGCTAGTTACCACAAGC 60.238 42.308 29.97 15.11 44.79 4.01
239 240 6.257193 CCGGTAATTTAGCTAGTTACCACAAG 59.743 42.308 29.97 20.86 44.79 3.16
240 241 6.070881 TCCGGTAATTTAGCTAGTTACCACAA 60.071 38.462 29.97 19.95 44.79 3.33
241 242 5.421693 TCCGGTAATTTAGCTAGTTACCACA 59.578 40.000 29.97 20.72 44.79 4.17
242 243 5.906073 TCCGGTAATTTAGCTAGTTACCAC 58.094 41.667 29.97 16.43 44.79 4.16
243 244 6.070881 TGTTCCGGTAATTTAGCTAGTTACCA 60.071 38.462 29.97 19.05 44.79 3.25
244 245 6.340522 TGTTCCGGTAATTTAGCTAGTTACC 58.659 40.000 25.64 25.64 42.39 2.85
245 246 7.707893 TGATGTTCCGGTAATTTAGCTAGTTAC 59.292 37.037 16.74 16.74 0.00 2.50
246 247 7.707893 GTGATGTTCCGGTAATTTAGCTAGTTA 59.292 37.037 0.00 0.00 0.00 2.24
247 248 6.537660 GTGATGTTCCGGTAATTTAGCTAGTT 59.462 38.462 0.00 0.00 0.00 2.24
248 249 6.047231 GTGATGTTCCGGTAATTTAGCTAGT 58.953 40.000 0.00 0.00 0.00 2.57
249 250 6.046593 TGTGATGTTCCGGTAATTTAGCTAG 58.953 40.000 0.00 0.00 0.00 3.42
250 251 5.979993 TGTGATGTTCCGGTAATTTAGCTA 58.020 37.500 0.00 0.00 0.00 3.32
251 252 4.839121 TGTGATGTTCCGGTAATTTAGCT 58.161 39.130 0.00 0.00 0.00 3.32
252 253 5.751243 ATGTGATGTTCCGGTAATTTAGC 57.249 39.130 0.00 0.00 0.00 3.09
253 254 8.433421 AAGTATGTGATGTTCCGGTAATTTAG 57.567 34.615 0.00 0.00 0.00 1.85
254 255 8.041919 TGAAGTATGTGATGTTCCGGTAATTTA 58.958 33.333 0.00 0.00 0.00 1.40
255 256 6.882140 TGAAGTATGTGATGTTCCGGTAATTT 59.118 34.615 0.00 0.00 0.00 1.82
256 257 6.411376 TGAAGTATGTGATGTTCCGGTAATT 58.589 36.000 0.00 0.00 0.00 1.40
257 258 5.984725 TGAAGTATGTGATGTTCCGGTAAT 58.015 37.500 0.00 0.00 0.00 1.89
258 259 5.408880 TGAAGTATGTGATGTTCCGGTAA 57.591 39.130 0.00 0.00 0.00 2.85
259 260 5.186215 TCTTGAAGTATGTGATGTTCCGGTA 59.814 40.000 0.00 0.00 0.00 4.02
260 261 3.973206 TGAAGTATGTGATGTTCCGGT 57.027 42.857 0.00 0.00 0.00 5.28
261 262 4.503910 TCTTGAAGTATGTGATGTTCCGG 58.496 43.478 0.00 0.00 0.00 5.14
262 263 6.073276 TGTTTCTTGAAGTATGTGATGTTCCG 60.073 38.462 0.00 0.00 0.00 4.30
263 264 7.202016 TGTTTCTTGAAGTATGTGATGTTCC 57.798 36.000 0.00 0.00 0.00 3.62
264 265 9.121517 CATTGTTTCTTGAAGTATGTGATGTTC 57.878 33.333 0.00 0.00 0.00 3.18
265 266 8.849168 TCATTGTTTCTTGAAGTATGTGATGTT 58.151 29.630 0.00 0.00 0.00 2.71
266 267 8.394971 TCATTGTTTCTTGAAGTATGTGATGT 57.605 30.769 0.00 0.00 0.00 3.06
267 268 8.509690 ACTCATTGTTTCTTGAAGTATGTGATG 58.490 33.333 0.00 0.00 0.00 3.07
268 269 8.627208 ACTCATTGTTTCTTGAAGTATGTGAT 57.373 30.769 0.00 0.00 0.00 3.06
269 270 7.933577 AGACTCATTGTTTCTTGAAGTATGTGA 59.066 33.333 0.00 0.00 0.00 3.58
270 271 8.092521 AGACTCATTGTTTCTTGAAGTATGTG 57.907 34.615 0.00 0.00 0.00 3.21
271 272 9.950496 ATAGACTCATTGTTTCTTGAAGTATGT 57.050 29.630 0.00 0.00 0.00 2.29
275 276 9.220767 GGTTATAGACTCATTGTTTCTTGAAGT 57.779 33.333 0.00 0.00 0.00 3.01
276 277 9.442047 AGGTTATAGACTCATTGTTTCTTGAAG 57.558 33.333 0.00 0.00 0.00 3.02
297 298 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
298 299 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
299 300 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
300 301 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
301 302 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
302 303 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
303 304 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
304 305 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
305 306 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
306 307 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
307 308 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
308 309 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
309 310 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
310 311 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
311 312 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
312 313 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
313 314 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
314 315 7.148738 GGAATATCTATGTAGTGTCATGCAACG 60.149 40.741 0.00 0.00 0.00 4.10
315 316 7.875041 AGGAATATCTATGTAGTGTCATGCAAC 59.125 37.037 0.00 0.00 0.00 4.17
316 317 7.966812 AGGAATATCTATGTAGTGTCATGCAA 58.033 34.615 0.00 0.00 0.00 4.08
317 318 7.544804 AGGAATATCTATGTAGTGTCATGCA 57.455 36.000 0.00 0.00 0.00 3.96
318 319 7.976734 GGTAGGAATATCTATGTAGTGTCATGC 59.023 40.741 0.00 0.00 0.00 4.06
319 320 8.470805 GGGTAGGAATATCTATGTAGTGTCATG 58.529 40.741 0.00 0.00 0.00 3.07
320 321 8.177456 TGGGTAGGAATATCTATGTAGTGTCAT 58.823 37.037 0.00 0.00 0.00 3.06
321 322 7.450634 GTGGGTAGGAATATCTATGTAGTGTCA 59.549 40.741 0.00 0.00 0.00 3.58
322 323 7.670559 AGTGGGTAGGAATATCTATGTAGTGTC 59.329 40.741 0.00 0.00 0.00 3.67
323 324 7.536625 AGTGGGTAGGAATATCTATGTAGTGT 58.463 38.462 0.00 0.00 0.00 3.55
324 325 9.702253 ATAGTGGGTAGGAATATCTATGTAGTG 57.298 37.037 0.00 0.00 0.00 2.74
325 326 9.702253 CATAGTGGGTAGGAATATCTATGTAGT 57.298 37.037 0.00 0.00 32.91 2.73
326 327 9.922477 TCATAGTGGGTAGGAATATCTATGTAG 57.078 37.037 0.00 0.00 36.45 2.74
327 328 9.922477 CTCATAGTGGGTAGGAATATCTATGTA 57.078 37.037 0.00 0.00 36.45 2.29
328 329 7.841729 CCTCATAGTGGGTAGGAATATCTATGT 59.158 40.741 0.00 0.00 36.45 2.29
329 330 7.841729 ACCTCATAGTGGGTAGGAATATCTATG 59.158 40.741 0.00 0.00 36.42 2.23
330 331 7.956357 ACCTCATAGTGGGTAGGAATATCTAT 58.044 38.462 0.00 0.00 33.59 1.98
331 332 7.358255 ACCTCATAGTGGGTAGGAATATCTA 57.642 40.000 0.00 0.00 33.59 1.98
332 333 6.234404 ACCTCATAGTGGGTAGGAATATCT 57.766 41.667 0.00 0.00 33.59 1.98
333 334 7.648039 CTACCTCATAGTGGGTAGGAATATC 57.352 44.000 10.33 0.00 46.64 1.63
341 342 7.819500 ACTATGTTACTACCTCATAGTGGGTA 58.180 38.462 13.74 0.00 46.65 3.69
342 343 6.680540 ACTATGTTACTACCTCATAGTGGGT 58.319 40.000 13.74 0.00 46.65 4.51
349 350 9.357161 CTTCCTTAGACTATGTTACTACCTCAT 57.643 37.037 0.00 0.00 0.00 2.90
350 351 8.334734 ACTTCCTTAGACTATGTTACTACCTCA 58.665 37.037 0.00 0.00 0.00 3.86
351 352 8.623030 CACTTCCTTAGACTATGTTACTACCTC 58.377 40.741 0.00 0.00 0.00 3.85
352 353 8.114743 ACACTTCCTTAGACTATGTTACTACCT 58.885 37.037 0.00 0.00 0.00 3.08
353 354 8.189460 CACACTTCCTTAGACTATGTTACTACC 58.811 40.741 0.00 0.00 0.00 3.18
354 355 8.954350 TCACACTTCCTTAGACTATGTTACTAC 58.046 37.037 0.00 0.00 0.00 2.73
355 356 9.524496 TTCACACTTCCTTAGACTATGTTACTA 57.476 33.333 0.00 0.00 0.00 1.82
356 357 8.418597 TTCACACTTCCTTAGACTATGTTACT 57.581 34.615 0.00 0.00 0.00 2.24
357 358 8.305317 ACTTCACACTTCCTTAGACTATGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
358 359 8.418597 ACTTCACACTTCCTTAGACTATGTTA 57.581 34.615 0.00 0.00 0.00 2.41
359 360 7.304497 ACTTCACACTTCCTTAGACTATGTT 57.696 36.000 0.00 0.00 0.00 2.71
360 361 6.919775 ACTTCACACTTCCTTAGACTATGT 57.080 37.500 0.00 0.00 0.00 2.29
361 362 8.524487 AGTAACTTCACACTTCCTTAGACTATG 58.476 37.037 0.00 0.00 0.00 2.23
362 363 8.653036 AGTAACTTCACACTTCCTTAGACTAT 57.347 34.615 0.00 0.00 0.00 2.12
363 364 9.228949 CTAGTAACTTCACACTTCCTTAGACTA 57.771 37.037 0.00 0.00 0.00 2.59
364 365 6.980416 AGTAACTTCACACTTCCTTAGACT 57.020 37.500 0.00 0.00 0.00 3.24
365 366 6.807720 GCTAGTAACTTCACACTTCCTTAGAC 59.192 42.308 0.00 0.00 0.00 2.59
366 367 6.720288 AGCTAGTAACTTCACACTTCCTTAGA 59.280 38.462 0.00 0.00 0.00 2.10
367 368 6.926313 AGCTAGTAACTTCACACTTCCTTAG 58.074 40.000 0.00 0.00 0.00 2.18
368 369 6.912951 AGCTAGTAACTTCACACTTCCTTA 57.087 37.500 0.00 0.00 0.00 2.69
369 370 5.810080 AGCTAGTAACTTCACACTTCCTT 57.190 39.130 0.00 0.00 0.00 3.36
370 371 5.810080 AAGCTAGTAACTTCACACTTCCT 57.190 39.130 0.00 0.00 0.00 3.36
371 372 7.097834 ACATAAGCTAGTAACTTCACACTTCC 58.902 38.462 0.00 0.00 0.00 3.46
372 373 8.535690 AACATAAGCTAGTAACTTCACACTTC 57.464 34.615 0.00 0.00 0.00 3.01
373 374 8.904099 AAACATAAGCTAGTAACTTCACACTT 57.096 30.769 0.00 0.00 0.00 3.16
374 375 8.904099 AAAACATAAGCTAGTAACTTCACACT 57.096 30.769 0.00 0.00 0.00 3.55
375 376 9.382244 CAAAAACATAAGCTAGTAACTTCACAC 57.618 33.333 0.00 0.00 0.00 3.82
376 377 8.073768 GCAAAAACATAAGCTAGTAACTTCACA 58.926 33.333 0.00 0.00 0.00 3.58
377 378 7.537649 GGCAAAAACATAAGCTAGTAACTTCAC 59.462 37.037 0.00 0.00 0.00 3.18
378 379 7.308951 GGGCAAAAACATAAGCTAGTAACTTCA 60.309 37.037 0.00 0.00 0.00 3.02
379 380 7.027760 GGGCAAAAACATAAGCTAGTAACTTC 58.972 38.462 0.00 0.00 0.00 3.01
380 381 6.492087 TGGGCAAAAACATAAGCTAGTAACTT 59.508 34.615 0.00 0.00 0.00 2.66
381 382 6.007703 TGGGCAAAAACATAAGCTAGTAACT 58.992 36.000 0.00 0.00 0.00 2.24
382 383 6.262193 TGGGCAAAAACATAAGCTAGTAAC 57.738 37.500 0.00 0.00 0.00 2.50
383 384 7.039363 ACAATGGGCAAAAACATAAGCTAGTAA 60.039 33.333 0.00 0.00 0.00 2.24
384 385 6.435904 ACAATGGGCAAAAACATAAGCTAGTA 59.564 34.615 0.00 0.00 0.00 1.82
385 386 5.245977 ACAATGGGCAAAAACATAAGCTAGT 59.754 36.000 0.00 0.00 0.00 2.57
386 387 5.723295 ACAATGGGCAAAAACATAAGCTAG 58.277 37.500 0.00 0.00 0.00 3.42
387 388 5.736951 ACAATGGGCAAAAACATAAGCTA 57.263 34.783 0.00 0.00 0.00 3.32
388 389 4.622260 ACAATGGGCAAAAACATAAGCT 57.378 36.364 0.00 0.00 0.00 3.74
389 390 5.121611 GGTTACAATGGGCAAAAACATAAGC 59.878 40.000 0.00 0.00 0.00 3.09
390 391 6.226787 TGGTTACAATGGGCAAAAACATAAG 58.773 36.000 0.00 0.00 0.00 1.73
391 392 6.174720 TGGTTACAATGGGCAAAAACATAA 57.825 33.333 0.00 0.00 0.00 1.90
392 393 5.788450 CTGGTTACAATGGGCAAAAACATA 58.212 37.500 0.00 0.00 0.00 2.29
393 394 4.640364 CTGGTTACAATGGGCAAAAACAT 58.360 39.130 0.00 0.00 0.00 2.71
394 395 3.742640 GCTGGTTACAATGGGCAAAAACA 60.743 43.478 0.00 0.00 0.00 2.83
395 396 2.805671 GCTGGTTACAATGGGCAAAAAC 59.194 45.455 0.00 0.00 0.00 2.43
396 397 2.224402 GGCTGGTTACAATGGGCAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
397 398 1.346068 GGCTGGTTACAATGGGCAAAA 59.654 47.619 0.00 0.00 0.00 2.44
398 399 0.972883 GGCTGGTTACAATGGGCAAA 59.027 50.000 0.00 0.00 0.00 3.68
399 400 0.178950 TGGCTGGTTACAATGGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
400 401 0.040942 ATGGCTGGTTACAATGGGCA 59.959 50.000 0.00 0.00 36.93 5.36
401 402 0.746659 GATGGCTGGTTACAATGGGC 59.253 55.000 0.00 0.00 0.00 5.36
402 403 1.341877 TGGATGGCTGGTTACAATGGG 60.342 52.381 0.00 0.00 0.00 4.00
403 404 2.142356 TGGATGGCTGGTTACAATGG 57.858 50.000 0.00 0.00 0.00 3.16
404 405 2.223876 GCATGGATGGCTGGTTACAATG 60.224 50.000 0.00 0.00 0.00 2.82
405 406 2.034124 GCATGGATGGCTGGTTACAAT 58.966 47.619 0.00 0.00 0.00 2.71
406 407 1.272369 TGCATGGATGGCTGGTTACAA 60.272 47.619 0.00 0.00 0.00 2.41
407 408 0.330941 TGCATGGATGGCTGGTTACA 59.669 50.000 0.00 0.00 0.00 2.41
408 409 1.610522 GATGCATGGATGGCTGGTTAC 59.389 52.381 2.46 0.00 0.00 2.50
409 410 1.479205 GGATGCATGGATGGCTGGTTA 60.479 52.381 2.46 0.00 0.00 2.85
410 411 0.757935 GGATGCATGGATGGCTGGTT 60.758 55.000 2.46 0.00 0.00 3.67
411 412 1.152610 GGATGCATGGATGGCTGGT 60.153 57.895 2.46 0.00 0.00 4.00
412 413 0.541998 ATGGATGCATGGATGGCTGG 60.542 55.000 2.46 0.00 0.00 4.85
413 414 0.888619 GATGGATGCATGGATGGCTG 59.111 55.000 2.46 0.00 0.00 4.85
414 415 0.251653 GGATGGATGCATGGATGGCT 60.252 55.000 2.46 0.00 0.00 4.75
415 416 0.541063 TGGATGGATGCATGGATGGC 60.541 55.000 2.46 0.00 0.00 4.40
609 644 1.704641 GGGCAATGGAAATAGGGGAC 58.295 55.000 0.00 0.00 0.00 4.46
973 1357 4.135153 CGGTGCCTCCTCTCGGTG 62.135 72.222 0.00 0.00 0.00 4.94
1130 1520 2.096174 CGAAAACGAGAACCCAAACACA 59.904 45.455 0.00 0.00 0.00 3.72
1256 1655 1.273986 AATTGCAGGCCCCAAATCCC 61.274 55.000 10.15 0.00 0.00 3.85
1259 1658 1.556451 GAGAAATTGCAGGCCCCAAAT 59.444 47.619 10.15 0.00 0.00 2.32
1260 1659 0.975887 GAGAAATTGCAGGCCCCAAA 59.024 50.000 10.15 0.00 0.00 3.28
1261 1660 0.114954 AGAGAAATTGCAGGCCCCAA 59.885 50.000 8.69 8.69 0.00 4.12
1263 1662 0.033699 AGAGAGAAATTGCAGGCCCC 60.034 55.000 0.00 0.00 0.00 5.80
1272 1677 1.132643 CGACGGACCGAGAGAGAAATT 59.867 52.381 23.38 0.00 0.00 1.82
1285 1690 1.782028 AAACAAAGGCAGCGACGGAC 61.782 55.000 0.00 0.00 0.00 4.79
1373 1778 2.100252 TGGGTAGCTGTGTTAGTATCGC 59.900 50.000 0.00 0.00 0.00 4.58
1470 1882 3.062370 AAGATGCAAGCTTTGGGCT 57.938 47.368 0.00 0.00 41.66 5.19
1540 1952 2.505628 TTTCTTTGCTGATTTGCGCA 57.494 40.000 5.66 5.66 35.36 6.09
1593 2005 4.324936 ACCAACGAAAAACACAATCAAACG 59.675 37.500 0.00 0.00 0.00 3.60
1610 2027 1.444553 GAGAGCGAGACCACCAACG 60.445 63.158 0.00 0.00 0.00 4.10
1837 2254 3.744719 CTCGAGGCCGACGGACAA 61.745 66.667 24.57 5.86 40.30 3.18
2022 2442 2.353803 GCAGAGGTTGTCGTAGATGGTT 60.354 50.000 0.00 0.00 40.67 3.67
2052 2472 2.338785 GCCCTTGCTCAGCTTCACC 61.339 63.158 0.00 0.00 33.53 4.02
2840 3265 2.362120 ATCCCCAAGCAGCAGCAC 60.362 61.111 3.17 0.00 45.49 4.40
2925 3353 6.096036 AGTTTTATCATCAGACAGACAGACG 58.904 40.000 0.00 0.00 0.00 4.18
2929 3357 7.335171 CCATTGAGTTTTATCATCAGACAGACA 59.665 37.037 0.00 0.00 0.00 3.41
3014 3446 4.222847 GGATCCCACCGACCGAGC 62.223 72.222 0.00 0.00 0.00 5.03
3015 3447 2.058595 AAGGATCCCACCGACCGAG 61.059 63.158 8.55 0.00 34.73 4.63
3026 3463 3.454082 ACAGATCAGAGAACCAAGGATCC 59.546 47.826 2.48 2.48 36.00 3.36
3073 3515 4.411927 AGGCACTCTCTCTCTTGTCTTAA 58.588 43.478 0.00 0.00 0.00 1.85
3096 3540 3.706855 TGGTACATGCTGGAGCGA 58.293 55.556 0.00 0.00 45.83 4.93
3171 3615 5.809562 CCTCAAGGATAGATAATAAGCAGCG 59.190 44.000 0.00 0.00 37.39 5.18
3181 3625 9.079239 AGATAGATCTTCCCTCAAGGATAGATA 57.921 37.037 0.00 1.51 46.94 1.98
3182 3626 7.954132 AGATAGATCTTCCCTCAAGGATAGAT 58.046 38.462 0.00 10.72 46.94 1.98
3183 3627 7.355512 AGATAGATCTTCCCTCAAGGATAGA 57.644 40.000 0.00 0.43 46.94 1.98
3184 3628 8.966868 GTTAGATAGATCTTCCCTCAAGGATAG 58.033 40.741 0.00 0.00 46.94 2.08
3204 3648 6.910972 CGATCACTGTACACATAACGTTAGAT 59.089 38.462 14.25 6.62 0.00 1.98
3290 3734 0.182775 ATCCAATCCAACCCGTAGCC 59.817 55.000 0.00 0.00 0.00 3.93
3299 3748 3.968649 CCATCCAATCCAATCCAATCCAA 59.031 43.478 0.00 0.00 0.00 3.53
3300 3749 3.051957 ACCATCCAATCCAATCCAATCCA 60.052 43.478 0.00 0.00 0.00 3.41
3301 3750 3.322828 CACCATCCAATCCAATCCAATCC 59.677 47.826 0.00 0.00 0.00 3.01
3302 3751 3.243975 GCACCATCCAATCCAATCCAATC 60.244 47.826 0.00 0.00 0.00 2.67
3303 3752 2.701951 GCACCATCCAATCCAATCCAAT 59.298 45.455 0.00 0.00 0.00 3.16
3304 3753 2.109774 GCACCATCCAATCCAATCCAA 58.890 47.619 0.00 0.00 0.00 3.53
3305 3754 1.288633 AGCACCATCCAATCCAATCCA 59.711 47.619 0.00 0.00 0.00 3.41
3306 3755 1.959282 GAGCACCATCCAATCCAATCC 59.041 52.381 0.00 0.00 0.00 3.01
3307 3756 2.883386 GAGAGCACCATCCAATCCAATC 59.117 50.000 0.00 0.00 0.00 2.67
3308 3757 2.512896 AGAGAGCACCATCCAATCCAAT 59.487 45.455 0.00 0.00 0.00 3.16
3385 3834 7.883833 TCACCACACAGGATAGATAGATACTAC 59.116 40.741 0.00 0.00 41.22 2.73
3386 3835 7.985589 TCACCACACAGGATAGATAGATACTA 58.014 38.462 0.00 0.00 41.22 1.82
3387 3836 6.853490 TCACCACACAGGATAGATAGATACT 58.147 40.000 0.00 0.00 41.22 2.12
3388 3837 7.710676 ATCACCACACAGGATAGATAGATAC 57.289 40.000 0.00 0.00 41.22 2.24
3496 3955 9.552114 GATCATCAGAGTACAACAATCAAAAAG 57.448 33.333 0.00 0.00 0.00 2.27
3500 3959 6.950842 AGGATCATCAGAGTACAACAATCAA 58.049 36.000 0.00 0.00 0.00 2.57
3655 4124 1.198867 TGGTTCGAAATGTTGGCATCG 59.801 47.619 0.00 1.17 33.50 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.