Multiple sequence alignment - TraesCS1B01G265600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G265600 chr1B 100.000 4486 0 0 1 4486 466092977 466088492 0.000000e+00 8285.0
1 TraesCS1B01G265600 chr1B 92.157 51 2 2 1365 1414 667395237 667395286 2.240000e-08 71.3
2 TraesCS1B01G265600 chr1B 91.837 49 3 1 1368 1415 106654584 106654632 2.900000e-07 67.6
3 TraesCS1B01G265600 chr1B 91.837 49 2 2 1365 1412 599230645 599230692 2.900000e-07 67.6
4 TraesCS1B01G265600 chr1D 93.260 1988 94 16 2199 4168 344594582 344596547 0.000000e+00 2892.0
5 TraesCS1B01G265600 chr1D 91.716 1533 63 18 1 1518 344591915 344593398 0.000000e+00 2069.0
6 TraesCS1B01G265600 chr1D 94.253 174 9 1 4170 4343 238940380 238940208 9.570000e-67 265.0
7 TraesCS1B01G265600 chr1D 92.432 185 11 3 4170 4354 196817679 196817860 1.240000e-65 261.0
8 TraesCS1B01G265600 chr1D 89.500 200 11 4 1501 1690 344593583 344593782 1.250000e-60 244.0
9 TraesCS1B01G265600 chr1D 91.589 107 3 2 4380 4486 344596550 344596650 4.680000e-30 143.0
10 TraesCS1B01G265600 chr1D 92.000 50 3 1 1365 1413 111846034 111845985 8.050000e-08 69.4
11 TraesCS1B01G265600 chr1A 95.024 1266 48 9 2908 4168 444126687 444127942 0.000000e+00 1975.0
12 TraesCS1B01G265600 chr1A 86.260 1099 64 35 628 1690 444124214 444125261 0.000000e+00 1112.0
13 TraesCS1B01G265600 chr1A 92.256 749 32 10 2199 2932 444125937 444126674 0.000000e+00 1038.0
14 TraesCS1B01G265600 chr1A 90.476 441 21 9 1689 2121 444125513 444125940 3.030000e-156 562.0
15 TraesCS1B01G265600 chr1A 95.327 107 5 0 4380 4486 444127945 444128051 2.150000e-38 171.0
16 TraesCS1B01G265600 chr1A 89.216 102 11 0 57 158 444123824 444123925 1.310000e-25 128.0
17 TraesCS1B01G265600 chr2A 90.078 383 27 4 237 610 476213250 476212870 1.880000e-133 486.0
18 TraesCS1B01G265600 chr2A 90.823 316 22 2 609 924 476212831 476212523 2.500000e-112 416.0
19 TraesCS1B01G265600 chr2A 94.531 256 14 0 1 256 476213589 476213334 3.250000e-106 396.0
20 TraesCS1B01G265600 chr2A 97.143 35 1 0 186 220 476213342 476213308 4.850000e-05 60.2
21 TraesCS1B01G265600 chr2A 100.000 29 0 0 951 979 476212468 476212440 2.000000e-03 54.7
22 TraesCS1B01G265600 chr7D 94.944 178 7 2 4161 4338 39001457 39001282 1.230000e-70 278.0
23 TraesCS1B01G265600 chr7D 93.750 48 2 1 1376 1423 182605436 182605482 2.240000e-08 71.3
24 TraesCS1B01G265600 chr4A 93.855 179 9 2 4158 4336 101750106 101750282 7.400000e-68 268.0
25 TraesCS1B01G265600 chr2D 92.973 185 11 2 4159 4342 580013755 580013938 7.400000e-68 268.0
26 TraesCS1B01G265600 chr5D 94.737 171 8 1 4165 4335 100549373 100549542 9.570000e-67 265.0
27 TraesCS1B01G265600 chr5D 89.268 205 11 11 4170 4372 322385097 322384902 3.470000e-61 246.0
28 TraesCS1B01G265600 chr4D 94.253 174 8 2 4162 4335 75782224 75782053 9.570000e-67 265.0
29 TraesCS1B01G265600 chr5B 91.892 185 13 2 4152 4335 607474629 607474812 1.600000e-64 257.0
30 TraesCS1B01G265600 chr5B 90.385 52 3 2 1368 1418 644257393 644257343 2.900000e-07 67.6
31 TraesCS1B01G265600 chr5B 90.196 51 4 1 1365 1414 549953107 549953057 1.040000e-06 65.8
32 TraesCS1B01G265600 chr7A 92.000 50 3 1 1368 1416 734521267 734521316 8.050000e-08 69.4
33 TraesCS1B01G265600 chr4B 90.196 51 3 2 1368 1417 97924817 97924768 1.040000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G265600 chr1B 466088492 466092977 4485 True 8285.00 8285 100.00000 1 4486 1 chr1B.!!$R1 4485
1 TraesCS1B01G265600 chr1D 344591915 344596650 4735 False 1337.00 2892 91.51625 1 4486 4 chr1D.!!$F2 4485
2 TraesCS1B01G265600 chr1A 444123824 444128051 4227 False 831.00 1975 91.42650 57 4486 6 chr1A.!!$F1 4429
3 TraesCS1B01G265600 chr2A 476212440 476213589 1149 True 282.58 486 94.51500 1 979 5 chr2A.!!$R1 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 1001 1.000060 TCTGCAGCAAAGAATTGTGCC 60.000 47.619 9.47 0.00 41.88 5.01 F
1402 1624 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
1641 2076 0.109597 GCATGCACACTACCACAAGC 60.110 55.000 14.21 0.00 0.00 4.01 F
3305 4199 0.670546 CTGACGGCGGTGACATTTCT 60.671 55.000 13.24 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2885 0.245539 TGCGCAGTAGGAAGGTACAC 59.754 55.000 5.66 0.00 0.0 2.90 R
2904 3765 0.609151 TCGAAACGGAACCATAGGCA 59.391 50.000 0.00 0.00 0.0 4.75 R
3344 4238 2.683362 AGCAGCACATGTGATCTCAATG 59.317 45.455 29.80 11.12 0.0 2.82 R
4214 5110 0.973632 TGCTCCGTATGTGGTCAACT 59.026 50.000 0.00 0.00 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 4.150897 TGTAGCATCCATCCTTGTTACC 57.849 45.455 0.00 0.00 31.01 2.85
145 146 3.521531 TGTAGCATCCATCCTTGTTACCA 59.478 43.478 0.00 0.00 31.01 3.25
340 444 9.793252 AAATTGTGCTGTTATAAATCTGACATC 57.207 29.630 0.00 0.00 0.00 3.06
372 477 7.015098 TCAGAATTGAGATATGAACCTCCTCTC 59.985 40.741 0.00 0.00 34.33 3.20
436 550 3.541632 TGGTGTCACCTTGTCTCTTTTC 58.458 45.455 22.56 0.00 39.58 2.29
450 564 7.356089 TGTCTCTTTTCTAGTTGACCTTGTA 57.644 36.000 0.00 0.00 31.99 2.41
557 671 6.509199 GCATCAAGATTCTGACTATGTTGTCG 60.509 42.308 0.00 0.00 39.64 4.35
778 945 3.249917 CGTTTGGTTTGGAATATGGTGC 58.750 45.455 0.00 0.00 0.00 5.01
801 968 1.750193 TCCATCGCAAAAGTGGATCC 58.250 50.000 4.20 4.20 37.12 3.36
818 997 3.181489 GGATCCTCTGCAGCAAAGAATTG 60.181 47.826 9.47 0.00 39.65 2.32
822 1001 1.000060 TCTGCAGCAAAGAATTGTGCC 60.000 47.619 9.47 0.00 41.88 5.01
848 1027 3.679389 ACATTTCAGTTCCAGTAGCCAG 58.321 45.455 0.00 0.00 0.00 4.85
913 1095 3.279434 GGCCCGTTCTATGTGAAATTCT 58.721 45.455 0.00 0.00 36.30 2.40
1095 1308 3.070987 GCTCCCGTCCCTCCTCCTA 62.071 68.421 0.00 0.00 0.00 2.94
1161 1383 4.890306 GCCTCCCTCTCCCTCCCC 62.890 77.778 0.00 0.00 0.00 4.81
1162 1384 4.179599 CCTCCCTCTCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1163 1385 3.039526 CTCCCTCTCCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
1239 1461 2.994995 TCCGTGGTGGCGATGTCT 60.995 61.111 0.00 0.00 37.80 3.41
1357 1579 1.337260 CCGAGTAAGAACAGCAGCAGT 60.337 52.381 0.00 0.00 0.00 4.40
1378 1600 7.881643 CAGTACATGCTTTCATCTATACTCC 57.118 40.000 0.00 0.00 0.00 3.85
1380 1602 5.791336 ACATGCTTTCATCTATACTCCGA 57.209 39.130 0.00 0.00 0.00 4.55
1381 1603 5.533482 ACATGCTTTCATCTATACTCCGAC 58.467 41.667 0.00 0.00 0.00 4.79
1382 1604 5.069119 ACATGCTTTCATCTATACTCCGACA 59.931 40.000 0.00 0.00 0.00 4.35
1383 1605 5.592104 TGCTTTCATCTATACTCCGACAA 57.408 39.130 0.00 0.00 0.00 3.18
1384 1606 5.592054 TGCTTTCATCTATACTCCGACAAG 58.408 41.667 0.00 0.00 0.00 3.16
1385 1607 5.127194 TGCTTTCATCTATACTCCGACAAGT 59.873 40.000 0.00 0.00 0.00 3.16
1386 1608 6.320418 TGCTTTCATCTATACTCCGACAAGTA 59.680 38.462 0.00 0.00 36.24 2.24
1387 1609 7.014326 TGCTTTCATCTATACTCCGACAAGTAT 59.986 37.037 9.17 9.17 43.29 2.12
1388 1610 7.868415 GCTTTCATCTATACTCCGACAAGTATT 59.132 37.037 9.40 0.00 41.54 1.89
1389 1611 9.751542 CTTTCATCTATACTCCGACAAGTATTT 57.248 33.333 9.40 0.00 41.54 1.40
1390 1612 9.745880 TTTCATCTATACTCCGACAAGTATTTC 57.254 33.333 9.40 0.00 41.54 2.17
1391 1613 7.883217 TCATCTATACTCCGACAAGTATTTCC 58.117 38.462 9.40 0.00 41.54 3.13
1392 1614 6.309712 TCTATACTCCGACAAGTATTTCCG 57.690 41.667 9.40 0.00 41.54 4.30
1393 1615 2.667473 ACTCCGACAAGTATTTCCGG 57.333 50.000 0.00 0.00 41.36 5.14
1394 1616 2.173519 ACTCCGACAAGTATTTCCGGA 58.826 47.619 0.00 0.00 45.74 5.14
1395 1617 2.094338 ACTCCGACAAGTATTTCCGGAC 60.094 50.000 1.83 0.00 43.47 4.79
1396 1618 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
1397 1619 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
1398 1620 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
1399 1621 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1400 1622 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1401 1623 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1402 1624 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1403 1625 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1409 1631 0.467659 CCGGACGGAGGGAGTATCTT 60.468 60.000 4.40 0.00 37.50 2.40
1440 1662 2.687425 TGGAATTGATTATGTGGGTGCG 59.313 45.455 0.00 0.00 0.00 5.34
1635 2070 1.066143 AGTACTGGCATGCACACTACC 60.066 52.381 21.36 0.00 0.00 3.18
1638 2073 0.606130 CTGGCATGCACACTACCACA 60.606 55.000 21.36 3.60 0.00 4.17
1639 2074 0.179006 TGGCATGCACACTACCACAA 60.179 50.000 21.36 0.00 0.00 3.33
1640 2075 0.523072 GGCATGCACACTACCACAAG 59.477 55.000 21.36 0.00 0.00 3.16
1641 2076 0.109597 GCATGCACACTACCACAAGC 60.110 55.000 14.21 0.00 0.00 4.01
1657 2103 2.171448 ACAAGCCCTATCCTAGTTGCAG 59.829 50.000 0.00 0.00 0.00 4.41
1686 2132 3.186702 TGATTCGACAGGTCACAAACA 57.813 42.857 0.00 0.00 0.00 2.83
1690 2399 2.912771 TCGACAGGTCACAAACATTGT 58.087 42.857 0.00 0.00 46.75 2.71
1771 2600 4.569943 TCTGATAGTGCAAGTTTGTCCTC 58.430 43.478 0.00 0.00 0.00 3.71
1775 2604 3.567478 AGTGCAAGTTTGTCCTCTTCT 57.433 42.857 0.00 0.00 0.00 2.85
1808 2637 2.400399 CAATTGCAACTTGGCTCACAG 58.600 47.619 0.00 0.00 34.04 3.66
1815 2644 2.624838 CAACTTGGCTCACAGGATTGTT 59.375 45.455 0.00 0.00 34.62 2.83
1836 2665 1.068748 CCAGTCATGCAGTGTGCTTTC 60.069 52.381 0.00 0.00 45.31 2.62
1848 2677 5.748152 GCAGTGTGCTTTCTTATTGAAACAA 59.252 36.000 0.00 0.00 40.96 2.83
1854 2683 7.066887 TGTGCTTTCTTATTGAAACAAGACTGA 59.933 33.333 0.00 0.00 39.50 3.41
1886 2715 7.618117 TGGTGTCTTTAGAATCTAGATACACCA 59.382 37.037 32.04 32.04 46.78 4.17
1887 2716 8.643324 GGTGTCTTTAGAATCTAGATACACCAT 58.357 37.037 30.02 8.89 41.44 3.55
1910 2739 7.713507 CCATTTTTCATGAATATCAAGCCATGT 59.286 33.333 9.40 0.00 38.00 3.21
1923 2752 4.273235 TCAAGCCATGTTACTATCGCAATG 59.727 41.667 0.00 0.00 0.00 2.82
1929 2758 4.965042 TGTTACTATCGCAATGCATACG 57.035 40.909 14.17 14.17 0.00 3.06
1948 2777 2.813754 ACGGATGGTTGTTCACAAGATG 59.186 45.455 0.00 0.00 36.39 2.90
1962 2791 5.696822 TCACAAGATGAAGTCGTGTACTAC 58.303 41.667 0.00 0.00 45.83 2.73
1963 2792 5.472478 TCACAAGATGAAGTCGTGTACTACT 59.528 40.000 0.00 0.00 45.83 2.57
1964 2793 5.569441 CACAAGATGAAGTCGTGTACTACTG 59.431 44.000 0.00 0.00 45.83 2.74
1965 2794 5.241064 ACAAGATGAAGTCGTGTACTACTGT 59.759 40.000 0.00 0.00 45.76 3.55
1966 2795 6.429078 ACAAGATGAAGTCGTGTACTACTGTA 59.571 38.462 0.00 0.00 45.76 2.74
1967 2796 6.419980 AGATGAAGTCGTGTACTACTGTAC 57.580 41.667 0.00 0.00 46.74 2.90
1968 2797 6.171921 AGATGAAGTCGTGTACTACTGTACT 58.828 40.000 7.67 0.00 46.70 2.73
1969 2798 5.602458 TGAAGTCGTGTACTACTGTACTG 57.398 43.478 7.67 0.00 46.70 2.74
2020 2849 1.208052 TGCCAGATTGGTGTCTCTAGC 59.792 52.381 0.00 0.00 40.46 3.42
2035 2864 6.314152 GTGTCTCTAGCATTTAGACCCTTTTC 59.686 42.308 6.18 0.00 39.10 2.29
2048 2885 4.072839 GACCCTTTTCCCAGTCTTTAGTG 58.927 47.826 0.00 0.00 0.00 2.74
2121 2958 2.158559 TCCAACATGACATTGGGAACG 58.841 47.619 12.31 0.00 45.73 3.95
2122 2959 2.158559 CCAACATGACATTGGGAACGA 58.841 47.619 0.00 0.00 42.57 3.85
2123 2960 2.162208 CCAACATGACATTGGGAACGAG 59.838 50.000 0.00 0.00 42.57 4.18
2124 2961 2.813754 CAACATGACATTGGGAACGAGT 59.186 45.455 0.00 0.00 0.00 4.18
2125 2962 2.699954 ACATGACATTGGGAACGAGTC 58.300 47.619 0.00 0.00 0.00 3.36
2126 2963 2.303022 ACATGACATTGGGAACGAGTCT 59.697 45.455 0.00 0.00 0.00 3.24
2127 2964 3.513912 ACATGACATTGGGAACGAGTCTA 59.486 43.478 0.00 0.00 0.00 2.59
2128 2965 3.868757 TGACATTGGGAACGAGTCTAG 57.131 47.619 0.00 0.00 0.00 2.43
2129 2966 2.094182 TGACATTGGGAACGAGTCTAGC 60.094 50.000 0.00 0.00 0.00 3.42
2130 2967 1.899814 ACATTGGGAACGAGTCTAGCA 59.100 47.619 0.00 0.00 0.00 3.49
2131 2968 2.301870 ACATTGGGAACGAGTCTAGCAA 59.698 45.455 0.00 0.00 0.00 3.91
2132 2969 3.055094 ACATTGGGAACGAGTCTAGCAAT 60.055 43.478 0.00 0.00 0.00 3.56
2133 2970 3.695830 TTGGGAACGAGTCTAGCAATT 57.304 42.857 0.00 0.00 0.00 2.32
2134 2971 2.972625 TGGGAACGAGTCTAGCAATTG 58.027 47.619 0.00 0.00 0.00 2.32
2135 2972 2.565391 TGGGAACGAGTCTAGCAATTGA 59.435 45.455 10.34 0.00 0.00 2.57
2136 2973 2.930682 GGGAACGAGTCTAGCAATTGAC 59.069 50.000 10.34 0.30 0.00 3.18
2137 2974 3.585862 GGAACGAGTCTAGCAATTGACA 58.414 45.455 10.34 0.00 35.81 3.58
2138 2975 4.184629 GGAACGAGTCTAGCAATTGACAT 58.815 43.478 10.34 0.00 35.81 3.06
2139 2976 4.631813 GGAACGAGTCTAGCAATTGACATT 59.368 41.667 10.34 0.00 35.81 2.71
2140 2977 5.810587 GGAACGAGTCTAGCAATTGACATTA 59.189 40.000 10.34 0.00 35.81 1.90
2141 2978 6.480320 GGAACGAGTCTAGCAATTGACATTAT 59.520 38.462 10.34 0.00 35.81 1.28
2142 2979 6.834959 ACGAGTCTAGCAATTGACATTATG 57.165 37.500 10.34 0.00 35.81 1.90
2143 2980 6.341316 ACGAGTCTAGCAATTGACATTATGT 58.659 36.000 10.34 0.00 35.81 2.29
2144 2981 6.256539 ACGAGTCTAGCAATTGACATTATGTG 59.743 38.462 10.34 0.00 35.81 3.21
2145 2982 6.476706 CGAGTCTAGCAATTGACATTATGTGA 59.523 38.462 10.34 0.00 35.81 3.58
2146 2983 7.170489 CGAGTCTAGCAATTGACATTATGTGAT 59.830 37.037 10.34 0.00 35.81 3.06
2147 2984 8.375608 AGTCTAGCAATTGACATTATGTGATC 57.624 34.615 10.34 0.00 35.81 2.92
2148 2985 7.170489 AGTCTAGCAATTGACATTATGTGATCG 59.830 37.037 10.34 0.00 35.81 3.69
2149 2986 6.986231 TCTAGCAATTGACATTATGTGATCGT 59.014 34.615 10.34 0.00 0.00 3.73
2150 2987 6.441093 AGCAATTGACATTATGTGATCGTT 57.559 33.333 10.34 0.00 0.00 3.85
2151 2988 7.552458 AGCAATTGACATTATGTGATCGTTA 57.448 32.000 10.34 0.00 0.00 3.18
2152 2989 8.158169 AGCAATTGACATTATGTGATCGTTAT 57.842 30.769 10.34 0.00 0.00 1.89
2153 2990 9.271828 AGCAATTGACATTATGTGATCGTTATA 57.728 29.630 10.34 0.00 0.00 0.98
2154 2991 9.318041 GCAATTGACATTATGTGATCGTTATAC 57.682 33.333 10.34 0.00 0.00 1.47
2157 2994 8.812147 TTGACATTATGTGATCGTTATACTCC 57.188 34.615 1.24 0.00 0.00 3.85
2158 2995 7.947282 TGACATTATGTGATCGTTATACTCCA 58.053 34.615 1.24 0.00 0.00 3.86
2159 2996 8.417884 TGACATTATGTGATCGTTATACTCCAA 58.582 33.333 1.24 0.00 0.00 3.53
2160 2997 8.589335 ACATTATGTGATCGTTATACTCCAAC 57.411 34.615 0.00 0.00 0.00 3.77
2161 2998 8.201464 ACATTATGTGATCGTTATACTCCAACA 58.799 33.333 0.00 0.00 0.00 3.33
2162 2999 9.208022 CATTATGTGATCGTTATACTCCAACAT 57.792 33.333 0.00 0.00 0.00 2.71
2163 3000 8.587952 TTATGTGATCGTTATACTCCAACATG 57.412 34.615 0.00 0.00 0.00 3.21
2164 3001 6.215495 TGTGATCGTTATACTCCAACATGA 57.785 37.500 0.00 0.00 0.00 3.07
2165 3002 6.040247 TGTGATCGTTATACTCCAACATGAC 58.960 40.000 0.00 0.00 0.00 3.06
2166 3003 6.040247 GTGATCGTTATACTCCAACATGACA 58.960 40.000 0.00 0.00 0.00 3.58
2167 3004 6.019801 GTGATCGTTATACTCCAACATGACAC 60.020 42.308 0.00 0.00 0.00 3.67
2168 3005 5.394224 TCGTTATACTCCAACATGACACA 57.606 39.130 0.00 0.00 0.00 3.72
2169 3006 5.972935 TCGTTATACTCCAACATGACACAT 58.027 37.500 0.00 0.00 0.00 3.21
2170 3007 7.102847 TCGTTATACTCCAACATGACACATA 57.897 36.000 0.00 0.00 0.00 2.29
2171 3008 7.548967 TCGTTATACTCCAACATGACACATAA 58.451 34.615 0.00 0.00 0.00 1.90
2172 3009 7.490079 TCGTTATACTCCAACATGACACATAAC 59.510 37.037 0.00 3.53 0.00 1.89
2173 3010 7.276878 CGTTATACTCCAACATGACACATAACA 59.723 37.037 0.00 0.00 0.00 2.41
2174 3011 8.604035 GTTATACTCCAACATGACACATAACAG 58.396 37.037 0.00 0.00 0.00 3.16
2175 3012 4.973168 ACTCCAACATGACACATAACAGT 58.027 39.130 0.00 0.00 0.00 3.55
2176 3013 6.109156 ACTCCAACATGACACATAACAGTA 57.891 37.500 0.00 0.00 0.00 2.74
2177 3014 5.932303 ACTCCAACATGACACATAACAGTAC 59.068 40.000 0.00 0.00 0.00 2.73
2178 3015 5.242434 TCCAACATGACACATAACAGTACC 58.758 41.667 0.00 0.00 0.00 3.34
2179 3016 5.012664 TCCAACATGACACATAACAGTACCT 59.987 40.000 0.00 0.00 0.00 3.08
2180 3017 5.705441 CCAACATGACACATAACAGTACCTT 59.295 40.000 0.00 0.00 0.00 3.50
2181 3018 6.128282 CCAACATGACACATAACAGTACCTTC 60.128 42.308 0.00 0.00 0.00 3.46
2182 3019 5.488341 ACATGACACATAACAGTACCTTCC 58.512 41.667 0.00 0.00 0.00 3.46
2183 3020 5.248477 ACATGACACATAACAGTACCTTCCT 59.752 40.000 0.00 0.00 0.00 3.36
2184 3021 6.439375 ACATGACACATAACAGTACCTTCCTA 59.561 38.462 0.00 0.00 0.00 2.94
2185 3022 6.921486 TGACACATAACAGTACCTTCCTAA 57.079 37.500 0.00 0.00 0.00 2.69
2186 3023 7.490657 TGACACATAACAGTACCTTCCTAAT 57.509 36.000 0.00 0.00 0.00 1.73
2187 3024 7.913789 TGACACATAACAGTACCTTCCTAATT 58.086 34.615 0.00 0.00 0.00 1.40
2188 3025 8.380099 TGACACATAACAGTACCTTCCTAATTT 58.620 33.333 0.00 0.00 0.00 1.82
2189 3026 8.788325 ACACATAACAGTACCTTCCTAATTTC 57.212 34.615 0.00 0.00 0.00 2.17
2190 3027 8.380099 ACACATAACAGTACCTTCCTAATTTCA 58.620 33.333 0.00 0.00 0.00 2.69
2191 3028 8.665685 CACATAACAGTACCTTCCTAATTTCAC 58.334 37.037 0.00 0.00 0.00 3.18
2192 3029 8.603304 ACATAACAGTACCTTCCTAATTTCACT 58.397 33.333 0.00 0.00 0.00 3.41
2195 3032 7.793948 ACAGTACCTTCCTAATTTCACTACT 57.206 36.000 0.00 0.00 0.00 2.57
2196 3033 7.838884 ACAGTACCTTCCTAATTTCACTACTC 58.161 38.462 0.00 0.00 0.00 2.59
2197 3034 7.093421 ACAGTACCTTCCTAATTTCACTACTCC 60.093 40.741 0.00 0.00 0.00 3.85
2198 3035 5.340439 ACCTTCCTAATTTCACTACTCCG 57.660 43.478 0.00 0.00 0.00 4.63
2199 3036 5.021458 ACCTTCCTAATTTCACTACTCCGA 58.979 41.667 0.00 0.00 0.00 4.55
2200 3037 5.482878 ACCTTCCTAATTTCACTACTCCGAA 59.517 40.000 0.00 0.00 0.00 4.30
2201 3038 5.811100 CCTTCCTAATTTCACTACTCCGAAC 59.189 44.000 0.00 0.00 0.00 3.95
2202 3039 4.990257 TCCTAATTTCACTACTCCGAACG 58.010 43.478 0.00 0.00 0.00 3.95
2326 3181 5.278463 CCAGACAACCAATTTGAGAACGAAT 60.278 40.000 0.00 0.00 38.73 3.34
2332 3187 8.076178 ACAACCAATTTGAGAACGAATTAGAAG 58.924 33.333 0.00 0.00 37.84 2.85
2622 3483 4.243270 ACACGGTCAAGTATAGCAAGTTC 58.757 43.478 0.00 0.00 0.00 3.01
2646 3507 6.978080 TCAAATTTTACCTGTTCTTGAAGCAC 59.022 34.615 0.00 0.00 0.00 4.40
2719 3580 6.000219 TGAAGCTTGAGAAATATGGATAGGC 59.000 40.000 2.10 0.00 0.00 3.93
2720 3581 5.573380 AGCTTGAGAAATATGGATAGGCA 57.427 39.130 0.00 0.00 0.00 4.75
2729 3590 9.507329 GAGAAATATGGATAGGCACTTTATCAA 57.493 33.333 0.00 0.00 41.75 2.57
2873 3734 8.615705 ACTGTATCTAGTCCATATCCTACATCA 58.384 37.037 0.00 0.00 0.00 3.07
2904 3765 6.639632 CATTTTGTGCTGCCCTATATACTT 57.360 37.500 0.00 0.00 0.00 2.24
2998 3892 8.780249 ACTAACAATAGCGTAACTGTGAAAAAT 58.220 29.630 0.00 0.00 31.96 1.82
3002 3896 9.953697 ACAATAGCGTAACTGTGAAAAATAAAA 57.046 25.926 0.00 0.00 0.00 1.52
3012 3906 6.039382 ACTGTGAAAAATAAAAGAGCTTCCGT 59.961 34.615 0.00 0.00 0.00 4.69
3082 3976 5.639506 ACAGGTGAATATGACAAGTTCTTCG 59.360 40.000 5.21 0.00 0.00 3.79
3083 3977 5.869344 CAGGTGAATATGACAAGTTCTTCGA 59.131 40.000 5.21 0.00 0.00 3.71
3305 4199 0.670546 CTGACGGCGGTGACATTTCT 60.671 55.000 13.24 0.00 0.00 2.52
3309 4203 1.134694 GGCGGTGACATTTCTTCGC 59.865 57.895 9.69 9.69 40.57 4.70
3321 4215 9.250624 GTGACATTTCTTCGCTTAATACTCTAT 57.749 33.333 0.00 0.00 0.00 1.98
3565 4459 6.663523 TCATAGTGACTACTGGATGTCAGAAA 59.336 38.462 0.00 0.00 46.18 2.52
3566 4460 5.140747 AGTGACTACTGGATGTCAGAAAC 57.859 43.478 0.00 0.00 46.18 2.78
3567 4461 4.835615 AGTGACTACTGGATGTCAGAAACT 59.164 41.667 0.00 0.00 46.18 2.66
3568 4462 5.047660 AGTGACTACTGGATGTCAGAAACTC 60.048 44.000 0.00 0.00 46.18 3.01
3569 4463 4.832823 TGACTACTGGATGTCAGAAACTCA 59.167 41.667 0.00 0.00 46.18 3.41
3570 4464 5.047731 TGACTACTGGATGTCAGAAACTCAG 60.048 44.000 0.00 0.00 46.18 3.35
3571 4465 4.835615 ACTACTGGATGTCAGAAACTCAGT 59.164 41.667 0.00 0.00 46.18 3.41
3572 4466 6.010850 ACTACTGGATGTCAGAAACTCAGTA 58.989 40.000 0.00 0.00 46.18 2.74
3573 4467 5.140747 ACTGGATGTCAGAAACTCAGTAC 57.859 43.478 0.00 0.00 46.18 2.73
3608 4502 1.077716 GCCCCAAGTACCGATGCTT 60.078 57.895 0.00 0.00 0.00 3.91
3618 4512 2.620251 ACCGATGCTTGCTGCTAATA 57.380 45.000 0.00 0.00 43.37 0.98
3725 4619 1.428219 CGCCTGAAGAATGCAGCTG 59.572 57.895 10.11 10.11 41.90 4.24
3753 4647 2.917713 TCCCTTTGTGCCCAACATAT 57.082 45.000 0.00 0.00 38.99 1.78
3810 4704 6.694411 CCTGTGCAGCAATAATACTTTGATTC 59.306 38.462 0.00 0.00 0.00 2.52
3837 4732 8.339714 GCGTTAATAGTCTGTTTGGCAAATATA 58.660 33.333 16.74 3.15 0.00 0.86
3901 4796 6.048732 TGAAACATCCAATCTAGTGCAGTA 57.951 37.500 0.37 0.37 0.00 2.74
3934 4829 7.596248 GCAAATAAAAGCAATATGATCGTCCAT 59.404 33.333 0.00 0.00 0.00 3.41
3936 4831 4.494350 AAAGCAATATGATCGTCCATGC 57.506 40.909 10.10 10.10 0.00 4.06
3985 4880 5.911280 GTGATGTTGCAAATATTCTCCATCG 59.089 40.000 0.00 0.00 32.21 3.84
3989 4884 5.414144 TGTTGCAAATATTCTCCATCGACAA 59.586 36.000 0.00 0.00 0.00 3.18
4163 5059 7.548075 TGCACTACTAGGTTTCATAAGCTTTAC 59.452 37.037 3.20 0.00 41.95 2.01
4168 5064 8.723942 ACTAGGTTTCATAAGCTTTACTCATG 57.276 34.615 3.20 1.52 41.95 3.07
4169 5065 8.322091 ACTAGGTTTCATAAGCTTTACTCATGT 58.678 33.333 3.20 0.00 41.95 3.21
4170 5066 9.817809 CTAGGTTTCATAAGCTTTACTCATGTA 57.182 33.333 3.20 0.00 41.95 2.29
4171 5067 8.494016 AGGTTTCATAAGCTTTACTCATGTAC 57.506 34.615 3.20 5.19 38.94 2.90
4172 5068 8.322091 AGGTTTCATAAGCTTTACTCATGTACT 58.678 33.333 3.20 0.00 38.94 2.73
4173 5069 8.604890 GGTTTCATAAGCTTTACTCATGTACTC 58.395 37.037 3.20 0.00 0.00 2.59
4174 5070 8.604890 GTTTCATAAGCTTTACTCATGTACTCC 58.395 37.037 3.20 0.00 0.00 3.85
4175 5071 6.817184 TCATAAGCTTTACTCATGTACTCCC 58.183 40.000 3.20 0.00 0.00 4.30
4176 5072 6.611642 TCATAAGCTTTACTCATGTACTCCCT 59.388 38.462 3.20 0.00 0.00 4.20
4177 5073 5.346181 AAGCTTTACTCATGTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
4178 5074 3.707102 AGCTTTACTCATGTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
4179 5075 3.451178 GCTTTACTCATGTACTCCCTCCA 59.549 47.826 0.00 0.00 0.00 3.86
4180 5076 4.101741 GCTTTACTCATGTACTCCCTCCAT 59.898 45.833 0.00 0.00 0.00 3.41
4181 5077 5.396884 GCTTTACTCATGTACTCCCTCCATT 60.397 44.000 0.00 0.00 0.00 3.16
4182 5078 5.871396 TTACTCATGTACTCCCTCCATTC 57.129 43.478 0.00 0.00 0.00 2.67
4183 5079 3.041946 ACTCATGTACTCCCTCCATTCC 58.958 50.000 0.00 0.00 0.00 3.01
4184 5080 3.310954 ACTCATGTACTCCCTCCATTCCT 60.311 47.826 0.00 0.00 0.00 3.36
4185 5081 4.078571 ACTCATGTACTCCCTCCATTCCTA 60.079 45.833 0.00 0.00 0.00 2.94
4186 5082 4.890988 TCATGTACTCCCTCCATTCCTAA 58.109 43.478 0.00 0.00 0.00 2.69
4187 5083 5.285401 TCATGTACTCCCTCCATTCCTAAA 58.715 41.667 0.00 0.00 0.00 1.85
4188 5084 5.911178 TCATGTACTCCCTCCATTCCTAAAT 59.089 40.000 0.00 0.00 0.00 1.40
4189 5085 7.079700 TCATGTACTCCCTCCATTCCTAAATA 58.920 38.462 0.00 0.00 0.00 1.40
4190 5086 7.739444 TCATGTACTCCCTCCATTCCTAAATAT 59.261 37.037 0.00 0.00 0.00 1.28
4191 5087 7.947782 TGTACTCCCTCCATTCCTAAATATT 57.052 36.000 0.00 0.00 0.00 1.28
4192 5088 8.344939 TGTACTCCCTCCATTCCTAAATATTT 57.655 34.615 5.89 5.89 0.00 1.40
4193 5089 8.217799 TGTACTCCCTCCATTCCTAAATATTTG 58.782 37.037 11.05 1.40 0.00 2.32
4194 5090 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
4195 5091 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
4196 5092 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
4197 5093 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
4198 5094 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
4199 5095 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
4200 5096 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
4216 5112 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4217 5113 8.964476 TGTCTTTCTAGAGATTTCAACAAGTT 57.036 30.769 0.00 0.00 0.00 2.66
4218 5114 8.830580 TGTCTTTCTAGAGATTTCAACAAGTTG 58.169 33.333 6.60 6.60 41.71 3.16
4219 5115 9.046296 GTCTTTCTAGAGATTTCAACAAGTTGA 57.954 33.333 10.54 11.34 46.72 3.18
4229 5125 3.135225 TCAACAAGTTGACCACATACGG 58.865 45.455 10.54 0.00 43.90 4.02
4230 5126 3.135225 CAACAAGTTGACCACATACGGA 58.865 45.455 10.54 0.00 42.93 4.69
4231 5127 3.040147 ACAAGTTGACCACATACGGAG 57.960 47.619 10.54 0.00 0.00 4.63
4232 5128 1.732259 CAAGTTGACCACATACGGAGC 59.268 52.381 0.00 0.00 0.00 4.70
4233 5129 0.973632 AGTTGACCACATACGGAGCA 59.026 50.000 0.00 0.00 0.00 4.26
4234 5130 1.346395 AGTTGACCACATACGGAGCAA 59.654 47.619 0.00 0.00 0.00 3.91
4235 5131 2.147958 GTTGACCACATACGGAGCAAA 58.852 47.619 0.00 0.00 0.00 3.68
4236 5132 2.093306 TGACCACATACGGAGCAAAG 57.907 50.000 0.00 0.00 0.00 2.77
4237 5133 1.346395 TGACCACATACGGAGCAAAGT 59.654 47.619 0.00 0.00 0.00 2.66
4238 5134 1.732259 GACCACATACGGAGCAAAGTG 59.268 52.381 0.00 0.00 0.00 3.16
4239 5135 1.346395 ACCACATACGGAGCAAAGTGA 59.654 47.619 0.00 0.00 0.00 3.41
4240 5136 2.002586 CCACATACGGAGCAAAGTGAG 58.997 52.381 0.00 0.00 0.00 3.51
4241 5137 2.612972 CCACATACGGAGCAAAGTGAGT 60.613 50.000 0.00 0.00 0.00 3.41
4242 5138 2.413112 CACATACGGAGCAAAGTGAGTG 59.587 50.000 0.00 0.00 0.00 3.51
4243 5139 2.299013 ACATACGGAGCAAAGTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
4244 5140 3.244078 ACATACGGAGCAAAGTGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
4245 5141 2.550830 ACGGAGCAAAGTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
4246 5142 2.417719 ACGGAGCAAAGTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
4247 5143 2.037772 ACGGAGCAAAGTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
4248 5144 3.258372 ACGGAGCAAAGTGAGTGAATCTA 59.742 43.478 0.00 0.00 0.00 1.98
4249 5145 3.614616 CGGAGCAAAGTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
4250 5146 4.569943 GGAGCAAAGTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
4251 5147 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
4290 5186 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
4306 5202 8.698973 TGGTAGTCCATTTGAAATGTCTAAAA 57.301 30.769 15.93 7.68 39.03 1.52
4307 5203 9.137459 TGGTAGTCCATTTGAAATGTCTAAAAA 57.863 29.630 15.93 5.83 39.03 1.94
4308 5204 9.626045 GGTAGTCCATTTGAAATGTCTAAAAAG 57.374 33.333 15.93 0.00 0.00 2.27
4330 5226 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
4331 5227 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
4332 5228 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
4333 5229 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
4334 5230 8.731591 ATAAATATTTAGGAACGGAGGGAGTA 57.268 34.615 13.15 0.00 0.00 2.59
4335 5231 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4336 5232 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4337 5233 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
4338 5234 2.732844 AGGAACGGAGGGAGTACTAG 57.267 55.000 0.00 0.00 0.00 2.57
4339 5235 2.203584 AGGAACGGAGGGAGTACTAGA 58.796 52.381 0.00 0.00 0.00 2.43
4340 5236 2.784682 AGGAACGGAGGGAGTACTAGAT 59.215 50.000 0.00 0.00 0.00 1.98
4341 5237 3.979347 AGGAACGGAGGGAGTACTAGATA 59.021 47.826 0.00 0.00 0.00 1.98
4342 5238 4.071423 GGAACGGAGGGAGTACTAGATAC 58.929 52.174 0.00 0.00 0.00 2.24
4343 5239 3.399440 ACGGAGGGAGTACTAGATACG 57.601 52.381 0.00 0.00 38.97 3.06
4344 5240 2.968574 ACGGAGGGAGTACTAGATACGA 59.031 50.000 11.17 0.00 38.97 3.43
4345 5241 3.389329 ACGGAGGGAGTACTAGATACGAA 59.611 47.826 11.17 0.00 38.97 3.85
4346 5242 4.141620 ACGGAGGGAGTACTAGATACGAAA 60.142 45.833 11.17 0.00 38.97 3.46
4347 5243 4.451774 CGGAGGGAGTACTAGATACGAAAG 59.548 50.000 0.00 0.00 38.97 2.62
4348 5244 4.216042 GGAGGGAGTACTAGATACGAAAGC 59.784 50.000 0.00 0.00 38.97 3.51
4349 5245 4.789807 AGGGAGTACTAGATACGAAAGCA 58.210 43.478 0.00 0.00 38.97 3.91
4350 5246 5.198965 AGGGAGTACTAGATACGAAAGCAA 58.801 41.667 0.00 0.00 38.97 3.91
4351 5247 5.655532 AGGGAGTACTAGATACGAAAGCAAA 59.344 40.000 0.00 0.00 38.97 3.68
4352 5248 6.324254 AGGGAGTACTAGATACGAAAGCAAAT 59.676 38.462 0.00 0.00 38.97 2.32
4353 5249 6.985059 GGGAGTACTAGATACGAAAGCAAATT 59.015 38.462 0.00 0.00 38.97 1.82
4354 5250 7.169476 GGGAGTACTAGATACGAAAGCAAATTC 59.831 40.741 0.00 0.00 38.97 2.17
4355 5251 7.705325 GGAGTACTAGATACGAAAGCAAATTCA 59.295 37.037 0.00 0.00 38.97 2.57
4356 5252 9.250624 GAGTACTAGATACGAAAGCAAATTCAT 57.749 33.333 0.00 0.00 38.97 2.57
4357 5253 9.250624 AGTACTAGATACGAAAGCAAATTCATC 57.749 33.333 0.00 0.00 38.97 2.92
4358 5254 9.031360 GTACTAGATACGAAAGCAAATTCATCA 57.969 33.333 0.00 0.00 0.00 3.07
4359 5255 8.668510 ACTAGATACGAAAGCAAATTCATCAT 57.331 30.769 0.00 0.00 0.00 2.45
4360 5256 8.554528 ACTAGATACGAAAGCAAATTCATCATG 58.445 33.333 0.00 0.00 0.00 3.07
4361 5257 7.325660 AGATACGAAAGCAAATTCATCATGT 57.674 32.000 0.00 0.00 0.00 3.21
4362 5258 7.765307 AGATACGAAAGCAAATTCATCATGTT 58.235 30.769 0.00 0.00 0.00 2.71
4363 5259 8.246180 AGATACGAAAGCAAATTCATCATGTTT 58.754 29.630 0.00 0.00 0.00 2.83
4364 5260 9.502145 GATACGAAAGCAAATTCATCATGTTTA 57.498 29.630 0.00 0.00 0.00 2.01
4366 5262 8.176814 ACGAAAGCAAATTCATCATGTTTATG 57.823 30.769 0.00 0.00 35.57 1.90
4367 5263 7.114920 CGAAAGCAAATTCATCATGTTTATGC 58.885 34.615 0.00 0.00 34.21 3.14
4368 5264 7.009815 CGAAAGCAAATTCATCATGTTTATGCT 59.990 33.333 5.35 5.35 42.88 3.79
4370 5266 7.534085 AGCAAATTCATCATGTTTATGCTTG 57.466 32.000 5.35 0.00 38.35 4.01
4371 5267 7.324935 AGCAAATTCATCATGTTTATGCTTGA 58.675 30.769 5.35 0.00 38.35 3.02
4372 5268 7.277098 AGCAAATTCATCATGTTTATGCTTGAC 59.723 33.333 5.35 0.00 38.35 3.18
4373 5269 7.063662 GCAAATTCATCATGTTTATGCTTGACA 59.936 33.333 0.00 0.00 34.21 3.58
4374 5270 8.927721 CAAATTCATCATGTTTATGCTTGACAA 58.072 29.630 0.00 0.00 34.21 3.18
4375 5271 9.661563 AAATTCATCATGTTTATGCTTGACAAT 57.338 25.926 0.00 0.00 34.21 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 6.183360 CCCATATGAAAATGCCAAATGTGTTG 60.183 38.462 3.65 0.00 0.00 3.33
145 146 5.881443 CCCATATGAAAATGCCAAATGTGTT 59.119 36.000 3.65 0.00 0.00 3.32
249 353 4.408993 TGCAGATTCACATTCAGAAACG 57.591 40.909 0.00 0.00 0.00 3.60
265 369 1.281577 TGCAGTGGGTCATAATGCAGA 59.718 47.619 0.00 0.00 41.65 4.26
298 402 5.425398 CACAATTTGTTCATTGTTTGCTCG 58.575 37.500 0.00 0.00 43.54 5.03
322 426 6.595682 ACTGGGGATGTCAGATTTATAACAG 58.404 40.000 0.00 0.00 36.22 3.16
340 444 5.557576 TCATATCTCAATTCTGACTGGGG 57.442 43.478 0.00 0.00 0.00 4.96
409 514 4.956075 AGAGACAAGGTGACACCAAAAATT 59.044 37.500 26.30 8.75 41.95 1.82
543 657 5.048153 TCAGTTCTCGACAACATAGTCAG 57.952 43.478 6.33 0.00 38.43 3.51
557 671 5.826586 TCTCTGCGATCTTTATCAGTTCTC 58.173 41.667 0.00 0.00 31.93 2.87
694 856 3.380004 CACTATCTGGAGACTGGAGTGAC 59.620 52.174 0.00 0.00 41.61 3.67
695 857 3.625853 CACTATCTGGAGACTGGAGTGA 58.374 50.000 0.00 0.00 41.61 3.41
778 945 1.265635 TCCACTTTTGCGATGGAAACG 59.734 47.619 0.00 0.00 39.60 3.60
794 961 1.093159 CTTTGCTGCAGAGGATCCAC 58.907 55.000 20.43 8.01 33.66 4.02
801 968 2.325761 GCACAATTCTTTGCTGCAGAG 58.674 47.619 20.43 13.55 38.56 3.35
818 997 2.607038 GGAACTGAAATGTTTCCGGCAC 60.607 50.000 0.00 0.00 36.36 5.01
822 1001 4.378459 GCTACTGGAACTGAAATGTTTCCG 60.378 45.833 3.26 0.00 36.36 4.30
848 1027 2.098770 GCAGCAATTTCTCCAGATGGAC 59.901 50.000 0.00 0.00 39.78 4.02
1222 1444 2.501223 GAAGACATCGCCACCACGGA 62.501 60.000 0.00 0.00 36.56 4.69
1357 1579 6.264518 TGTCGGAGTATAGATGAAAGCATGTA 59.735 38.462 0.00 0.00 34.11 2.29
1366 1588 7.308408 CGGAAATACTTGTCGGAGTATAGATGA 60.308 40.741 7.22 0.00 40.92 2.92
1367 1589 6.802348 CGGAAATACTTGTCGGAGTATAGATG 59.198 42.308 7.22 0.00 40.92 2.90
1368 1590 6.072064 CCGGAAATACTTGTCGGAGTATAGAT 60.072 42.308 0.00 0.27 40.92 1.98
1369 1591 5.240183 CCGGAAATACTTGTCGGAGTATAGA 59.760 44.000 0.00 0.00 40.92 1.98
1370 1592 5.240183 TCCGGAAATACTTGTCGGAGTATAG 59.760 44.000 0.00 0.00 43.84 1.31
1372 1594 3.956199 TCCGGAAATACTTGTCGGAGTAT 59.044 43.478 0.00 2.51 43.84 2.12
1374 1596 2.173519 TCCGGAAATACTTGTCGGAGT 58.826 47.619 0.00 0.00 43.84 3.85
1375 1597 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
1376 1598 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
1377 1599 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
1378 1600 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
1380 1602 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1381 1603 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1382 1604 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1383 1605 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1384 1606 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1385 1607 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1386 1608 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1387 1609 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1388 1610 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
1389 1611 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
1390 1612 0.467659 AAGATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
1391 1613 1.400737 AAAGATACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
1392 1614 3.908643 AAAAAGATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
1426 1648 0.940126 CAGAGCGCACCCACATAATC 59.060 55.000 11.47 0.00 0.00 1.75
1635 2070 2.092968 TGCAACTAGGATAGGGCTTGTG 60.093 50.000 0.00 0.00 44.97 3.33
1638 2073 2.171448 CACTGCAACTAGGATAGGGCTT 59.829 50.000 0.00 0.00 44.97 4.35
1639 2074 1.765314 CACTGCAACTAGGATAGGGCT 59.235 52.381 0.00 0.00 44.97 5.19
1640 2075 1.811941 GCACTGCAACTAGGATAGGGC 60.812 57.143 0.00 0.00 44.97 5.19
1641 2076 1.486310 TGCACTGCAACTAGGATAGGG 59.514 52.381 0.00 0.00 36.89 3.53
1686 2132 5.581874 CAGAAGTTTTTGCAAACCAGACAAT 59.418 36.000 12.39 2.49 43.08 2.71
1690 2399 5.398603 TTCAGAAGTTTTTGCAAACCAGA 57.601 34.783 12.39 0.00 43.08 3.86
1758 2587 5.123027 CAGGATAAGAAGAGGACAAACTTGC 59.877 44.000 0.00 0.00 0.00 4.01
1771 2600 5.458891 GCAATTGCTATGCAGGATAAGAAG 58.541 41.667 23.21 0.00 43.29 2.85
1808 2637 2.163010 CACTGCATGACTGGAACAATCC 59.837 50.000 0.00 0.00 46.76 3.01
1815 2644 4.384599 GCACACTGCATGACTGGA 57.615 55.556 0.00 0.00 44.26 3.86
1836 2665 8.019669 CCAATCTGTCAGTCTTGTTTCAATAAG 58.980 37.037 13.30 0.00 0.00 1.73
1848 2677 4.696479 AAAGACACCAATCTGTCAGTCT 57.304 40.909 0.00 0.00 42.74 3.24
1854 2683 8.367660 TCTAGATTCTAAAGACACCAATCTGT 57.632 34.615 0.00 0.00 35.17 3.41
1887 2716 9.585099 GTAACATGGCTTGATATTCATGAAAAA 57.415 29.630 13.09 4.21 39.27 1.94
1901 2730 4.530388 CATTGCGATAGTAACATGGCTTG 58.470 43.478 0.00 0.00 45.42 4.01
1910 2739 4.245845 TCCGTATGCATTGCGATAGTAA 57.754 40.909 20.18 0.00 47.00 2.24
1923 2752 2.080693 TGTGAACAACCATCCGTATGC 58.919 47.619 0.00 0.00 0.00 3.14
1929 2758 4.520492 ACTTCATCTTGTGAACAACCATCC 59.480 41.667 0.00 0.00 41.79 3.51
2020 2849 4.923415 AGACTGGGAAAAGGGTCTAAATG 58.077 43.478 0.00 0.00 37.29 2.32
2035 2864 4.562963 GGAAGGTACACACTAAAGACTGGG 60.563 50.000 0.00 0.00 0.00 4.45
2048 2885 0.245539 TGCGCAGTAGGAAGGTACAC 59.754 55.000 5.66 0.00 0.00 2.90
2121 2958 7.776933 TCACATAATGTCAATTGCTAGACTC 57.223 36.000 0.00 0.00 35.81 3.36
2122 2959 7.170489 CGATCACATAATGTCAATTGCTAGACT 59.830 37.037 0.00 0.00 35.81 3.24
2123 2960 7.042456 ACGATCACATAATGTCAATTGCTAGAC 60.042 37.037 0.00 0.00 35.37 2.59
2124 2961 6.986231 ACGATCACATAATGTCAATTGCTAGA 59.014 34.615 0.00 0.00 0.00 2.43
2125 2962 7.182361 ACGATCACATAATGTCAATTGCTAG 57.818 36.000 0.00 0.00 0.00 3.42
2126 2963 7.552458 AACGATCACATAATGTCAATTGCTA 57.448 32.000 0.00 0.00 0.00 3.49
2127 2964 6.441093 AACGATCACATAATGTCAATTGCT 57.559 33.333 0.00 0.00 0.00 3.91
2128 2965 9.318041 GTATAACGATCACATAATGTCAATTGC 57.682 33.333 0.00 0.00 0.00 3.56
2131 2968 9.424319 GGAGTATAACGATCACATAATGTCAAT 57.576 33.333 0.00 0.00 0.00 2.57
2132 2969 8.417884 TGGAGTATAACGATCACATAATGTCAA 58.582 33.333 0.00 0.00 0.00 3.18
2133 2970 7.947282 TGGAGTATAACGATCACATAATGTCA 58.053 34.615 0.00 0.00 0.00 3.58
2134 2971 8.700644 GTTGGAGTATAACGATCACATAATGTC 58.299 37.037 0.00 0.00 0.00 3.06
2135 2972 8.201464 TGTTGGAGTATAACGATCACATAATGT 58.799 33.333 0.00 0.00 0.00 2.71
2136 2973 8.587952 TGTTGGAGTATAACGATCACATAATG 57.412 34.615 0.00 0.00 0.00 1.90
2137 2974 9.208022 CATGTTGGAGTATAACGATCACATAAT 57.792 33.333 0.00 0.00 0.00 1.28
2138 2975 8.417884 TCATGTTGGAGTATAACGATCACATAA 58.582 33.333 0.00 0.00 0.00 1.90
2139 2976 7.865889 GTCATGTTGGAGTATAACGATCACATA 59.134 37.037 0.00 0.00 0.00 2.29
2140 2977 6.701841 GTCATGTTGGAGTATAACGATCACAT 59.298 38.462 0.00 0.00 0.00 3.21
2141 2978 6.040247 GTCATGTTGGAGTATAACGATCACA 58.960 40.000 0.00 0.00 0.00 3.58
2142 2979 6.019801 GTGTCATGTTGGAGTATAACGATCAC 60.020 42.308 0.00 0.00 0.00 3.06
2143 2980 6.040247 GTGTCATGTTGGAGTATAACGATCA 58.960 40.000 0.00 0.00 0.00 2.92
2144 2981 6.040247 TGTGTCATGTTGGAGTATAACGATC 58.960 40.000 0.00 0.00 0.00 3.69
2145 2982 5.972935 TGTGTCATGTTGGAGTATAACGAT 58.027 37.500 0.00 0.00 0.00 3.73
2146 2983 5.394224 TGTGTCATGTTGGAGTATAACGA 57.606 39.130 0.00 0.00 0.00 3.85
2147 2984 7.276878 TGTTATGTGTCATGTTGGAGTATAACG 59.723 37.037 0.00 0.00 33.48 3.18
2148 2985 8.487313 TGTTATGTGTCATGTTGGAGTATAAC 57.513 34.615 0.00 0.00 0.00 1.89
2149 2986 8.318412 ACTGTTATGTGTCATGTTGGAGTATAA 58.682 33.333 0.00 0.00 0.00 0.98
2150 2987 7.847096 ACTGTTATGTGTCATGTTGGAGTATA 58.153 34.615 0.00 0.00 0.00 1.47
2151 2988 6.711277 ACTGTTATGTGTCATGTTGGAGTAT 58.289 36.000 0.00 0.00 0.00 2.12
2152 2989 6.109156 ACTGTTATGTGTCATGTTGGAGTA 57.891 37.500 0.00 0.00 0.00 2.59
2153 2990 4.973168 ACTGTTATGTGTCATGTTGGAGT 58.027 39.130 0.00 0.00 0.00 3.85
2154 2991 5.351465 GGTACTGTTATGTGTCATGTTGGAG 59.649 44.000 0.00 0.00 0.00 3.86
2155 2992 5.012664 AGGTACTGTTATGTGTCATGTTGGA 59.987 40.000 0.00 0.00 37.18 3.53
2156 2993 5.245531 AGGTACTGTTATGTGTCATGTTGG 58.754 41.667 0.00 0.00 37.18 3.77
2157 2994 6.128282 GGAAGGTACTGTTATGTGTCATGTTG 60.128 42.308 0.00 0.00 40.86 3.33
2158 2995 5.938125 GGAAGGTACTGTTATGTGTCATGTT 59.062 40.000 0.00 0.00 40.86 2.71
2159 2996 5.248477 AGGAAGGTACTGTTATGTGTCATGT 59.752 40.000 0.00 0.00 40.86 3.21
2160 2997 5.734720 AGGAAGGTACTGTTATGTGTCATG 58.265 41.667 0.00 0.00 40.86 3.07
2161 2998 7.490657 TTAGGAAGGTACTGTTATGTGTCAT 57.509 36.000 0.00 0.00 40.86 3.06
2162 2999 6.921486 TTAGGAAGGTACTGTTATGTGTCA 57.079 37.500 0.00 0.00 40.86 3.58
2163 3000 8.788325 AAATTAGGAAGGTACTGTTATGTGTC 57.212 34.615 0.00 0.00 40.86 3.67
2164 3001 8.380099 TGAAATTAGGAAGGTACTGTTATGTGT 58.620 33.333 0.00 0.00 40.86 3.72
2165 3002 8.665685 GTGAAATTAGGAAGGTACTGTTATGTG 58.334 37.037 0.00 0.00 40.86 3.21
2166 3003 8.603304 AGTGAAATTAGGAAGGTACTGTTATGT 58.397 33.333 0.00 0.00 40.86 2.29
2169 3006 9.317827 AGTAGTGAAATTAGGAAGGTACTGTTA 57.682 33.333 0.00 0.00 40.86 2.41
2170 3007 8.203681 AGTAGTGAAATTAGGAAGGTACTGTT 57.796 34.615 0.00 0.00 40.86 3.16
2171 3008 7.093421 GGAGTAGTGAAATTAGGAAGGTACTGT 60.093 40.741 0.00 0.00 40.86 3.55
2172 3009 7.266400 GGAGTAGTGAAATTAGGAAGGTACTG 58.734 42.308 0.00 0.00 40.86 2.74
2174 3011 6.096001 TCGGAGTAGTGAAATTAGGAAGGTAC 59.904 42.308 0.00 0.00 0.00 3.34
2175 3012 6.189859 TCGGAGTAGTGAAATTAGGAAGGTA 58.810 40.000 0.00 0.00 0.00 3.08
2176 3013 5.021458 TCGGAGTAGTGAAATTAGGAAGGT 58.979 41.667 0.00 0.00 0.00 3.50
2177 3014 5.593679 TCGGAGTAGTGAAATTAGGAAGG 57.406 43.478 0.00 0.00 0.00 3.46
2178 3015 5.515626 CGTTCGGAGTAGTGAAATTAGGAAG 59.484 44.000 0.00 0.00 0.00 3.46
2179 3016 5.183713 TCGTTCGGAGTAGTGAAATTAGGAA 59.816 40.000 0.00 0.00 0.00 3.36
2180 3017 4.701651 TCGTTCGGAGTAGTGAAATTAGGA 59.298 41.667 0.00 0.00 0.00 2.94
2181 3018 4.797349 GTCGTTCGGAGTAGTGAAATTAGG 59.203 45.833 0.00 0.00 0.00 2.69
2182 3019 4.797349 GGTCGTTCGGAGTAGTGAAATTAG 59.203 45.833 0.00 0.00 0.00 1.73
2183 3020 4.218200 TGGTCGTTCGGAGTAGTGAAATTA 59.782 41.667 0.00 0.00 0.00 1.40
2184 3021 3.006110 TGGTCGTTCGGAGTAGTGAAATT 59.994 43.478 0.00 0.00 0.00 1.82
2185 3022 2.559668 TGGTCGTTCGGAGTAGTGAAAT 59.440 45.455 0.00 0.00 0.00 2.17
2186 3023 1.955778 TGGTCGTTCGGAGTAGTGAAA 59.044 47.619 0.00 0.00 0.00 2.69
2187 3024 1.267806 GTGGTCGTTCGGAGTAGTGAA 59.732 52.381 0.00 0.00 0.00 3.18
2188 3025 0.877071 GTGGTCGTTCGGAGTAGTGA 59.123 55.000 0.00 0.00 0.00 3.41
2189 3026 0.594602 TGTGGTCGTTCGGAGTAGTG 59.405 55.000 0.00 0.00 0.00 2.74
2190 3027 1.542492 ATGTGGTCGTTCGGAGTAGT 58.458 50.000 0.00 0.00 0.00 2.73
2191 3028 3.119743 TGTTATGTGGTCGTTCGGAGTAG 60.120 47.826 0.00 0.00 0.00 2.57
2192 3029 2.819019 TGTTATGTGGTCGTTCGGAGTA 59.181 45.455 0.00 0.00 0.00 2.59
2193 3030 1.614903 TGTTATGTGGTCGTTCGGAGT 59.385 47.619 0.00 0.00 0.00 3.85
2194 3031 2.357327 TGTTATGTGGTCGTTCGGAG 57.643 50.000 0.00 0.00 0.00 4.63
2195 3032 2.610976 CCTTGTTATGTGGTCGTTCGGA 60.611 50.000 0.00 0.00 0.00 4.55
2196 3033 1.730064 CCTTGTTATGTGGTCGTTCGG 59.270 52.381 0.00 0.00 0.00 4.30
2197 3034 1.730064 CCCTTGTTATGTGGTCGTTCG 59.270 52.381 0.00 0.00 0.00 3.95
2198 3035 2.482721 CACCCTTGTTATGTGGTCGTTC 59.517 50.000 0.00 0.00 0.00 3.95
2199 3036 2.158726 ACACCCTTGTTATGTGGTCGTT 60.159 45.455 0.00 0.00 34.33 3.85
2200 3037 1.418637 ACACCCTTGTTATGTGGTCGT 59.581 47.619 0.00 0.00 34.33 4.34
2201 3038 1.804151 CACACCCTTGTTATGTGGTCG 59.196 52.381 0.00 0.00 40.05 4.79
2202 3039 2.858745 ACACACCCTTGTTATGTGGTC 58.141 47.619 8.34 0.00 46.46 4.02
2326 3181 8.032451 CCAACTTTGTGGAAAAGAAACTTCTAA 58.968 33.333 4.91 0.00 41.65 2.10
2464 3319 8.634475 ACTCTTGACAGCAAAATTAAAAAGAC 57.366 30.769 0.00 0.00 32.73 3.01
2465 3320 9.950680 CTACTCTTGACAGCAAAATTAAAAAGA 57.049 29.630 0.00 0.00 32.73 2.52
2474 3329 7.045416 TGTAGTTTCTACTCTTGACAGCAAAA 58.955 34.615 8.13 0.00 35.78 2.44
2622 3483 6.074888 CGTGCTTCAAGAACAGGTAAAATTTG 60.075 38.462 0.00 0.00 0.00 2.32
2646 3507 3.328382 TTCACCTAATGAACCTGTCCG 57.672 47.619 0.00 0.00 42.62 4.79
2765 3626 6.183360 GCAGGTTCCAGATTAATCAACAGTAC 60.183 42.308 17.56 7.37 0.00 2.73
2904 3765 0.609151 TCGAAACGGAACCATAGGCA 59.391 50.000 0.00 0.00 0.00 4.75
2998 3892 7.681939 ATTTATCACAACGGAAGCTCTTTTA 57.318 32.000 0.00 0.00 0.00 1.52
3002 3896 6.206634 TGAAAATTTATCACAACGGAAGCTCT 59.793 34.615 0.00 0.00 0.00 4.09
3082 3976 3.746492 GCACATCCGTAAATACCCTCATC 59.254 47.826 0.00 0.00 0.00 2.92
3083 3977 3.391296 AGCACATCCGTAAATACCCTCAT 59.609 43.478 0.00 0.00 0.00 2.90
3282 4176 3.490759 GTCACCGCCGTCAGCATG 61.491 66.667 0.00 0.00 44.04 4.06
3305 4199 5.005740 TCCGCCTATAGAGTATTAAGCGAA 58.994 41.667 14.62 0.00 44.75 4.70
3344 4238 2.683362 AGCAGCACATGTGATCTCAATG 59.317 45.455 29.80 11.12 0.00 2.82
3565 4459 7.573843 GCTTGCATTATTGACAAAGTACTGAGT 60.574 37.037 0.00 0.00 0.00 3.41
3566 4460 6.744537 GCTTGCATTATTGACAAAGTACTGAG 59.255 38.462 0.00 0.00 0.00 3.35
3567 4461 6.349280 GGCTTGCATTATTGACAAAGTACTGA 60.349 38.462 0.00 0.00 0.00 3.41
3568 4462 5.801947 GGCTTGCATTATTGACAAAGTACTG 59.198 40.000 0.00 0.00 0.00 2.74
3569 4463 5.105756 GGGCTTGCATTATTGACAAAGTACT 60.106 40.000 0.00 0.00 0.00 2.73
3570 4464 5.102313 GGGCTTGCATTATTGACAAAGTAC 58.898 41.667 0.00 0.00 0.00 2.73
3571 4465 4.159506 GGGGCTTGCATTATTGACAAAGTA 59.840 41.667 0.00 0.00 0.00 2.24
3572 4466 3.055891 GGGGCTTGCATTATTGACAAAGT 60.056 43.478 0.00 0.00 0.00 2.66
3573 4467 3.055963 TGGGGCTTGCATTATTGACAAAG 60.056 43.478 0.00 0.00 0.00 2.77
3725 4619 1.535226 GGCACAAAGGGAAACAACGTC 60.535 52.381 0.00 0.00 0.00 4.34
3810 4704 2.413796 TGCCAAACAGACTATTAACGCG 59.586 45.455 3.53 3.53 0.00 6.01
3837 4732 7.624360 TCTAATAAATGTCGGCAGTTTTGAT 57.376 32.000 8.43 0.00 34.54 2.57
3897 4792 7.462109 TTGCTTTTATTTGCAACAACTACTG 57.538 32.000 0.00 0.00 43.17 2.74
3923 4818 1.368950 CCGAGGCATGGACGATCAT 59.631 57.895 0.00 0.00 0.00 2.45
3934 4829 1.891919 GTGTGCTTTGACCGAGGCA 60.892 57.895 0.00 0.00 0.00 4.75
3936 4831 1.270094 TGTAGTGTGCTTTGACCGAGG 60.270 52.381 0.00 0.00 0.00 4.63
3985 4880 3.187700 ACGTGTTGAGTTCTCAGTTGTC 58.812 45.455 2.77 0.00 0.00 3.18
3989 4884 2.930040 CACAACGTGTTGAGTTCTCAGT 59.070 45.455 18.87 0.00 42.93 3.41
4163 5059 3.312890 AGGAATGGAGGGAGTACATGAG 58.687 50.000 0.00 0.00 0.00 2.90
4168 5064 8.218488 ACAAATATTTAGGAATGGAGGGAGTAC 58.782 37.037 0.00 0.00 0.00 2.73
4169 5065 8.344939 ACAAATATTTAGGAATGGAGGGAGTA 57.655 34.615 0.00 0.00 0.00 2.59
4170 5066 7.129504 AGACAAATATTTAGGAATGGAGGGAGT 59.870 37.037 0.00 0.00 0.00 3.85
4171 5067 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
4172 5068 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
4173 5069 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
4174 5070 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
4190 5086 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4191 5087 8.964476 ACTTGTTGAAATCTCTAGAAAGACAA 57.036 30.769 0.00 0.00 0.00 3.18
4192 5088 8.830580 CAACTTGTTGAAATCTCTAGAAAGACA 58.169 33.333 7.66 0.00 0.00 3.41
4193 5089 9.046296 TCAACTTGTTGAAATCTCTAGAAAGAC 57.954 33.333 13.05 0.00 0.00 3.01
4194 5090 9.046296 GTCAACTTGTTGAAATCTCTAGAAAGA 57.954 33.333 16.46 0.00 32.04 2.52
4195 5091 8.286097 GGTCAACTTGTTGAAATCTCTAGAAAG 58.714 37.037 16.46 0.00 32.04 2.62
4196 5092 7.773224 TGGTCAACTTGTTGAAATCTCTAGAAA 59.227 33.333 16.46 0.00 32.04 2.52
4197 5093 7.226720 GTGGTCAACTTGTTGAAATCTCTAGAA 59.773 37.037 16.46 0.00 32.04 2.10
4198 5094 6.706270 GTGGTCAACTTGTTGAAATCTCTAGA 59.294 38.462 16.46 0.00 32.04 2.43
4199 5095 6.483307 TGTGGTCAACTTGTTGAAATCTCTAG 59.517 38.462 16.46 0.00 32.04 2.43
4200 5096 6.353323 TGTGGTCAACTTGTTGAAATCTCTA 58.647 36.000 16.46 1.32 32.04 2.43
4201 5097 5.192927 TGTGGTCAACTTGTTGAAATCTCT 58.807 37.500 16.46 0.00 32.04 3.10
4202 5098 5.499139 TGTGGTCAACTTGTTGAAATCTC 57.501 39.130 16.46 10.88 32.04 2.75
4203 5099 6.293407 CGTATGTGGTCAACTTGTTGAAATCT 60.293 38.462 16.46 5.33 32.04 2.40
4204 5100 5.851177 CGTATGTGGTCAACTTGTTGAAATC 59.149 40.000 16.46 10.45 32.04 2.17
4205 5101 5.278266 CCGTATGTGGTCAACTTGTTGAAAT 60.278 40.000 16.46 10.90 32.04 2.17
4206 5102 4.035792 CCGTATGTGGTCAACTTGTTGAAA 59.964 41.667 16.46 6.85 32.04 2.69
4207 5103 3.562141 CCGTATGTGGTCAACTTGTTGAA 59.438 43.478 16.46 3.35 32.04 2.69
4208 5104 3.135225 CCGTATGTGGTCAACTTGTTGA 58.865 45.455 11.62 11.62 0.00 3.18
4209 5105 3.135225 TCCGTATGTGGTCAACTTGTTG 58.865 45.455 7.13 7.13 0.00 3.33
4210 5106 3.399330 CTCCGTATGTGGTCAACTTGTT 58.601 45.455 0.00 0.00 0.00 2.83
4211 5107 2.870435 GCTCCGTATGTGGTCAACTTGT 60.870 50.000 0.00 0.00 0.00 3.16
4212 5108 1.732259 GCTCCGTATGTGGTCAACTTG 59.268 52.381 0.00 0.00 0.00 3.16
4213 5109 1.346395 TGCTCCGTATGTGGTCAACTT 59.654 47.619 0.00 0.00 0.00 2.66
4214 5110 0.973632 TGCTCCGTATGTGGTCAACT 59.026 50.000 0.00 0.00 0.00 3.16
4215 5111 1.803334 TTGCTCCGTATGTGGTCAAC 58.197 50.000 0.00 0.00 0.00 3.18
4216 5112 2.224426 ACTTTGCTCCGTATGTGGTCAA 60.224 45.455 0.00 0.00 0.00 3.18
4217 5113 1.346395 ACTTTGCTCCGTATGTGGTCA 59.654 47.619 0.00 0.00 0.00 4.02
4218 5114 1.732259 CACTTTGCTCCGTATGTGGTC 59.268 52.381 0.00 0.00 0.00 4.02
4219 5115 1.346395 TCACTTTGCTCCGTATGTGGT 59.654 47.619 0.00 0.00 0.00 4.16
4220 5116 2.002586 CTCACTTTGCTCCGTATGTGG 58.997 52.381 0.00 0.00 0.00 4.17
4221 5117 2.413112 CACTCACTTTGCTCCGTATGTG 59.587 50.000 0.00 0.00 0.00 3.21
4222 5118 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
4223 5119 2.959516 TCACTCACTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
4224 5120 3.678056 TTCACTCACTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
4225 5121 3.258372 AGATTCACTCACTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
4226 5122 2.037772 AGATTCACTCACTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
4227 5123 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
4228 5124 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
4229 5125 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
4230 5126 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
4282 5178 9.626045 CTTTTTAGACATTTCAAATGGACTACC 57.374 33.333 14.70 0.00 0.00 3.18
4304 5200 9.350951 CCCTCCGTTCCTAAATATTTATCTTTT 57.649 33.333 8.34 0.00 0.00 2.27
4305 5201 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
4306 5202 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
4307 5203 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
4308 5204 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
4309 5205 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
4310 5206 7.786464 AGTACTCCCTCCGTTCCTAAATATTTA 59.214 37.037 7.66 7.66 0.00 1.40
4311 5207 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4312 5208 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4313 5209 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4314 5210 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4315 5211 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4316 5212 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4317 5213 3.782523 TCTAGTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
4318 5214 3.387962 TCTAGTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
4319 5215 2.203584 TCTAGTACTCCCTCCGTTCCT 58.796 52.381 0.00 0.00 0.00 3.36
4320 5216 2.725221 TCTAGTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
4321 5217 3.745458 CGTATCTAGTACTCCCTCCGTTC 59.255 52.174 0.00 0.00 0.00 3.95
4322 5218 3.389329 TCGTATCTAGTACTCCCTCCGTT 59.611 47.826 0.00 0.00 0.00 4.44
4323 5219 2.968574 TCGTATCTAGTACTCCCTCCGT 59.031 50.000 0.00 0.00 0.00 4.69
4324 5220 3.674528 TCGTATCTAGTACTCCCTCCG 57.325 52.381 0.00 0.00 0.00 4.63
4325 5221 4.216042 GCTTTCGTATCTAGTACTCCCTCC 59.784 50.000 0.00 0.00 0.00 4.30
4326 5222 4.820716 TGCTTTCGTATCTAGTACTCCCTC 59.179 45.833 0.00 0.00 0.00 4.30
4327 5223 4.789807 TGCTTTCGTATCTAGTACTCCCT 58.210 43.478 0.00 0.00 0.00 4.20
4328 5224 5.511234 TTGCTTTCGTATCTAGTACTCCC 57.489 43.478 0.00 0.00 0.00 4.30
4329 5225 7.705325 TGAATTTGCTTTCGTATCTAGTACTCC 59.295 37.037 0.00 0.00 0.00 3.85
4330 5226 8.630278 TGAATTTGCTTTCGTATCTAGTACTC 57.370 34.615 0.00 0.00 0.00 2.59
4331 5227 9.250624 GATGAATTTGCTTTCGTATCTAGTACT 57.749 33.333 0.00 0.00 0.00 2.73
4332 5228 9.031360 TGATGAATTTGCTTTCGTATCTAGTAC 57.969 33.333 0.00 0.00 0.00 2.73
4333 5229 9.764363 ATGATGAATTTGCTTTCGTATCTAGTA 57.236 29.630 0.00 0.00 0.00 1.82
4334 5230 8.554528 CATGATGAATTTGCTTTCGTATCTAGT 58.445 33.333 0.00 0.00 0.00 2.57
4335 5231 8.554528 ACATGATGAATTTGCTTTCGTATCTAG 58.445 33.333 0.00 0.00 0.00 2.43
4336 5232 8.437360 ACATGATGAATTTGCTTTCGTATCTA 57.563 30.769 0.00 0.00 0.00 1.98
4337 5233 7.325660 ACATGATGAATTTGCTTTCGTATCT 57.674 32.000 0.00 0.00 0.00 1.98
4338 5234 7.975866 AACATGATGAATTTGCTTTCGTATC 57.024 32.000 0.00 0.00 0.00 2.24
4340 5236 9.288124 CATAAACATGATGAATTTGCTTTCGTA 57.712 29.630 0.00 0.00 0.00 3.43
4341 5237 7.201461 GCATAAACATGATGAATTTGCTTTCGT 60.201 33.333 0.00 0.00 0.00 3.85
4342 5238 7.009815 AGCATAAACATGATGAATTTGCTTTCG 59.990 33.333 0.00 0.00 34.47 3.46
4343 5239 8.193250 AGCATAAACATGATGAATTTGCTTTC 57.807 30.769 0.00 0.00 34.47 2.62
4344 5240 8.447833 CAAGCATAAACATGATGAATTTGCTTT 58.552 29.630 20.18 5.58 43.23 3.51
4345 5241 7.820386 TCAAGCATAAACATGATGAATTTGCTT 59.180 29.630 18.47 18.47 45.74 3.91
4346 5242 7.277098 GTCAAGCATAAACATGATGAATTTGCT 59.723 33.333 0.00 6.86 39.42 3.91
4347 5243 7.063662 TGTCAAGCATAAACATGATGAATTTGC 59.936 33.333 0.00 4.68 0.00 3.68
4348 5244 8.468720 TGTCAAGCATAAACATGATGAATTTG 57.531 30.769 0.00 0.21 0.00 2.32
4349 5245 9.661563 ATTGTCAAGCATAAACATGATGAATTT 57.338 25.926 0.00 0.00 0.00 1.82
4353 5249 9.738832 CATTATTGTCAAGCATAAACATGATGA 57.261 29.630 0.00 0.00 0.00 2.92
4354 5250 9.524106 ACATTATTGTCAAGCATAAACATGATG 57.476 29.630 0.00 0.00 0.00 3.07
4363 5259 9.791801 ACCACATATACATTATTGTCAAGCATA 57.208 29.630 0.00 0.00 37.28 3.14
4364 5260 8.696043 ACCACATATACATTATTGTCAAGCAT 57.304 30.769 0.00 0.00 37.28 3.79
4365 5261 8.518430 AACCACATATACATTATTGTCAAGCA 57.482 30.769 0.00 0.00 37.28 3.91
4396 5292 5.919141 CCTTCGTACAGGTACATAAGCATAC 59.081 44.000 9.97 0.00 35.87 2.39
4443 5339 2.982470 GCGAGCAGAAACAAAAATCAGG 59.018 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.