Multiple sequence alignment - TraesCS1B01G265300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G265300 chr1B 100.000 2668 0 0 1 2668 466071068 466073735 0.000000e+00 4927.0
1 TraesCS1B01G265300 chr1B 90.000 670 51 9 1462 2124 129376911 129376251 0.000000e+00 852.0
2 TraesCS1B01G265300 chr1B 100.000 329 0 0 3041 3369 466074108 466074436 2.870000e-170 608.0
3 TraesCS1B01G265300 chr1B 89.372 414 36 8 278 690 434640865 434640459 6.450000e-142 514.0
4 TraesCS1B01G265300 chr1B 89.706 408 30 11 274 679 533819662 533820059 8.340000e-141 510.0
5 TraesCS1B01G265300 chr1B 89.362 235 23 2 1891 2125 562423782 562423550 9.140000e-76 294.0
6 TraesCS1B01G265300 chr1D 94.562 1931 75 19 754 2668 344610452 344608536 0.000000e+00 2957.0
7 TraesCS1B01G265300 chr1D 92.749 331 20 4 3041 3369 344608476 344608148 3.040000e-130 475.0
8 TraesCS1B01G265300 chr1D 87.047 193 24 1 3 194 344611197 344611005 2.040000e-52 217.0
9 TraesCS1B01G265300 chr1D 97.143 35 0 1 718 752 489928839 489928872 1.310000e-04 58.4
10 TraesCS1B01G265300 chr1D 97.143 35 0 1 718 752 490011967 490012000 1.310000e-04 58.4
11 TraesCS1B01G265300 chr1D 97.143 35 0 1 718 752 490012422 490012455 1.310000e-04 58.4
12 TraesCS1B01G265300 chr1D 97.143 35 0 1 718 752 490012878 490012911 1.310000e-04 58.4
13 TraesCS1B01G265300 chr1A 92.723 1168 44 20 754 1902 444146966 444145821 0.000000e+00 1648.0
14 TraesCS1B01G265300 chr1A 94.133 767 34 7 1907 2668 444145459 444144699 0.000000e+00 1157.0
15 TraesCS1B01G265300 chr1A 92.771 332 18 6 3041 3369 444144639 444144311 3.040000e-130 475.0
16 TraesCS1B01G265300 chr1A 83.817 241 29 5 3 233 444147276 444147036 1.570000e-53 220.0
17 TraesCS1B01G265300 chr7B 88.924 632 41 10 1462 2073 29840138 29839516 0.000000e+00 752.0
18 TraesCS1B01G265300 chr7B 88.608 632 43 11 1462 2073 630868241 630868863 0.000000e+00 741.0
19 TraesCS1B01G265300 chr4D 88.449 632 44 11 1462 2073 361165937 361166559 0.000000e+00 736.0
20 TraesCS1B01G265300 chr4D 88.449 632 43 12 1462 2073 505948527 505949148 0.000000e+00 736.0
21 TraesCS1B01G265300 chr4D 88.095 630 50 14 1462 2073 361192379 361193001 0.000000e+00 725.0
22 TraesCS1B01G265300 chr2B 86.529 631 51 20 1462 2074 52988229 52987615 0.000000e+00 664.0
23 TraesCS1B01G265300 chr4A 90.602 415 30 9 277 687 618414264 618414673 2.960000e-150 542.0
24 TraesCS1B01G265300 chr4A 88.646 229 24 2 1895 2123 57021205 57020979 9.210000e-71 278.0
25 TraesCS1B01G265300 chr7A 89.157 415 37 8 276 687 696396810 696396401 8.340000e-141 510.0
26 TraesCS1B01G265300 chr2D 89.157 415 37 8 278 690 19585580 19585172 8.340000e-141 510.0
27 TraesCS1B01G265300 chr2D 88.783 419 35 9 278 692 392091638 392091228 1.400000e-138 503.0
28 TraesCS1B01G265300 chr6B 89.104 413 39 6 277 685 647438911 647439321 3.000000e-140 508.0
29 TraesCS1B01G265300 chr6B 88.745 231 24 2 1895 2125 7165447 7165675 7.120000e-72 281.0
30 TraesCS1B01G265300 chr6B 88.312 231 25 2 1895 2125 7201958 7202186 3.310000e-70 276.0
31 TraesCS1B01G265300 chr3D 89.268 410 38 6 277 685 611372602 611373006 3.000000e-140 508.0
32 TraesCS1B01G265300 chr3A 89.078 412 35 9 278 686 734740927 734740523 1.400000e-138 503.0
33 TraesCS1B01G265300 chr6A 88.312 231 25 2 1895 2125 50541643 50541415 3.310000e-70 276.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G265300 chr1B 466071068 466074436 3368 False 2767.500000 4927 100.000000 1 3369 2 chr1B.!!$F2 3368
1 TraesCS1B01G265300 chr1B 129376251 129376911 660 True 852.000000 852 90.000000 1462 2124 1 chr1B.!!$R1 662
2 TraesCS1B01G265300 chr1D 344608148 344611197 3049 True 1216.333333 2957 91.452667 3 3369 3 chr1D.!!$R1 3366
3 TraesCS1B01G265300 chr1A 444144311 444147276 2965 True 875.000000 1648 90.861000 3 3369 4 chr1A.!!$R1 3366
4 TraesCS1B01G265300 chr7B 29839516 29840138 622 True 752.000000 752 88.924000 1462 2073 1 chr7B.!!$R1 611
5 TraesCS1B01G265300 chr7B 630868241 630868863 622 False 741.000000 741 88.608000 1462 2073 1 chr7B.!!$F1 611
6 TraesCS1B01G265300 chr4D 361165937 361166559 622 False 736.000000 736 88.449000 1462 2073 1 chr4D.!!$F1 611
7 TraesCS1B01G265300 chr4D 505948527 505949148 621 False 736.000000 736 88.449000 1462 2073 1 chr4D.!!$F3 611
8 TraesCS1B01G265300 chr4D 361192379 361193001 622 False 725.000000 725 88.095000 1462 2073 1 chr4D.!!$F2 611
9 TraesCS1B01G265300 chr2B 52987615 52988229 614 True 664.000000 664 86.529000 1462 2074 1 chr2B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 1029 0.036306 ATTTGGGTCGGACCTCACAC 59.964 55.0 25.39 9.98 38.64 3.82 F
577 1035 0.179067 GTCGGACCTCACACACCAAA 60.179 55.0 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 3132 0.040157 TTTCATCTGCAGCAACGCAC 60.040 50.0 9.47 0.0 36.86 5.34 R
2407 3272 1.087501 GCCCTAGAAAGAAACCAGCG 58.912 55.0 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.850452 GTTGAAAAATCCTGAAATTCATACGAC 58.150 33.333 0.00 0.00 30.81 4.34
74 75 6.771076 TGAAATTCATACGACGAAATGAAGG 58.229 36.000 23.95 2.08 43.34 3.46
77 78 6.589830 ATTCATACGACGAAATGAAGGAAG 57.410 37.500 23.95 0.78 43.34 3.46
98 107 9.853177 AGGAAGTATGAAATTCTAATAGTTGGG 57.147 33.333 0.00 0.00 0.00 4.12
100 109 8.465273 AAGTATGAAATTCTAATAGTTGGGGC 57.535 34.615 0.00 0.00 0.00 5.80
108 117 6.926630 TTCTAATAGTTGGGGCACAAATTT 57.073 33.333 8.09 5.25 41.58 1.82
122 131 7.099120 GGGCACAAATTTTGAAAGATGTAGAT 58.901 34.615 15.81 0.00 0.00 1.98
124 133 9.638239 GGCACAAATTTTGAAAGATGTAGATAA 57.362 29.630 15.81 0.00 0.00 1.75
146 156 9.607285 GATAAACATTTTCTTAAGTCGCTGAAA 57.393 29.630 1.63 0.00 0.00 2.69
180 190 5.449862 CCCAAAGAATTGAAGTTTGACACGA 60.450 40.000 0.00 0.00 38.94 4.35
182 192 4.452890 AGAATTGAAGTTTGACACGACG 57.547 40.909 0.00 0.00 0.00 5.12
203 657 6.887763 CGACGTTCGACTTTATAAATGACAAG 59.112 38.462 0.00 0.00 43.74 3.16
206 660 8.767085 ACGTTCGACTTTATAAATGACAAGAAA 58.233 29.630 0.00 0.00 0.00 2.52
215 670 1.981256 ATGACAAGAAAACAGGCCGT 58.019 45.000 0.00 0.00 0.00 5.68
223 678 3.751518 AGAAAACAGGCCGTAATTGACT 58.248 40.909 0.00 0.00 0.00 3.41
233 688 1.732259 CGTAATTGACTGTGCCTCCAC 59.268 52.381 0.00 0.00 42.40 4.02
235 690 0.478072 AATTGACTGTGCCTCCACCA 59.522 50.000 0.00 0.00 41.35 4.17
238 694 0.471022 TGACTGTGCCTCCACCACTA 60.471 55.000 0.00 0.00 41.35 2.74
241 697 0.320771 CTGTGCCTCCACCACTACAC 60.321 60.000 0.00 0.00 41.35 2.90
242 698 1.051556 TGTGCCTCCACCACTACACA 61.052 55.000 0.00 0.00 41.35 3.72
246 702 1.406069 GCCTCCACCACTACACATCTG 60.406 57.143 0.00 0.00 0.00 2.90
264 722 4.266070 TCCGAGATAGCACCGCGC 62.266 66.667 0.00 0.00 42.91 6.86
277 735 2.633639 CCGCGCGGTATAACTATCG 58.366 57.895 39.71 10.47 34.50 2.92
278 736 0.166597 CCGCGCGGTATAACTATCGA 59.833 55.000 39.71 0.00 33.10 3.59
279 737 1.521411 CGCGCGGTATAACTATCGAG 58.479 55.000 24.84 0.00 33.10 4.04
280 738 1.136141 CGCGCGGTATAACTATCGAGT 60.136 52.381 24.84 0.00 34.25 4.18
281 739 2.240040 GCGCGGTATAACTATCGAGTG 58.760 52.381 8.83 0.00 34.25 3.51
282 740 2.240040 CGCGGTATAACTATCGAGTGC 58.760 52.381 0.00 0.00 35.52 4.40
283 741 2.350102 CGCGGTATAACTATCGAGTGCA 60.350 50.000 0.00 0.00 35.52 4.57
284 742 3.235195 GCGGTATAACTATCGAGTGCAG 58.765 50.000 0.00 0.00 35.52 4.41
285 743 3.235195 CGGTATAACTATCGAGTGCAGC 58.765 50.000 0.00 0.00 35.52 5.25
286 744 3.235195 GGTATAACTATCGAGTGCAGCG 58.765 50.000 2.65 2.65 35.52 5.18
287 745 3.058432 GGTATAACTATCGAGTGCAGCGA 60.058 47.826 13.20 13.20 42.48 4.93
289 747 2.586258 AACTATCGAGTGCAGCGATT 57.414 45.000 24.03 9.27 45.29 3.34
290 748 2.586258 ACTATCGAGTGCAGCGATTT 57.414 45.000 24.03 12.54 45.29 2.17
291 749 2.196749 ACTATCGAGTGCAGCGATTTG 58.803 47.619 24.03 19.39 45.29 2.32
292 750 1.524355 CTATCGAGTGCAGCGATTTGG 59.476 52.381 24.03 13.75 45.29 3.28
293 751 0.391661 ATCGAGTGCAGCGATTTGGT 60.392 50.000 16.22 0.00 45.29 3.67
294 752 2.600321 ATCGAGTGCAGCGATTTGGTG 61.600 52.381 16.22 0.00 45.29 4.17
299 757 2.879907 CAGCGATTTGGTGCCCAG 59.120 61.111 0.00 0.00 39.57 4.45
300 758 2.361610 AGCGATTTGGTGCCCAGG 60.362 61.111 0.00 0.00 33.81 4.45
301 759 4.133796 GCGATTTGGTGCCCAGGC 62.134 66.667 0.38 0.38 42.35 4.85
302 760 2.361610 CGATTTGGTGCCCAGGCT 60.362 61.111 10.58 0.00 42.51 4.58
303 761 2.409870 CGATTTGGTGCCCAGGCTC 61.410 63.158 10.58 6.18 42.51 4.70
304 762 1.304381 GATTTGGTGCCCAGGCTCA 60.304 57.895 10.58 5.75 42.51 4.26
305 763 0.685458 GATTTGGTGCCCAGGCTCAT 60.685 55.000 10.58 0.00 42.51 2.90
306 764 0.685458 ATTTGGTGCCCAGGCTCATC 60.685 55.000 10.58 0.00 42.51 2.92
307 765 1.792757 TTTGGTGCCCAGGCTCATCT 61.793 55.000 10.58 0.00 42.51 2.90
308 766 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
309 767 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
310 768 3.332385 TGCCCAGGCTCATCTGCA 61.332 61.111 10.58 0.00 42.51 4.41
311 769 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
312 770 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
313 771 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
314 772 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
315 773 2.685017 AGGCTCATCTGCACCCGA 60.685 61.111 0.00 0.00 34.04 5.14
316 774 2.068821 AGGCTCATCTGCACCCGAT 61.069 57.895 0.00 0.00 34.04 4.18
317 775 1.596477 GGCTCATCTGCACCCGATC 60.596 63.158 0.00 0.00 34.04 3.69
318 776 1.144716 GCTCATCTGCACCCGATCA 59.855 57.895 0.00 0.00 0.00 2.92
319 777 0.879400 GCTCATCTGCACCCGATCAG 60.879 60.000 0.00 0.00 0.00 2.90
320 778 0.749049 CTCATCTGCACCCGATCAGA 59.251 55.000 0.00 0.00 42.72 3.27
321 779 1.137675 CTCATCTGCACCCGATCAGAA 59.862 52.381 0.00 0.00 41.96 3.02
322 780 1.554617 TCATCTGCACCCGATCAGAAA 59.445 47.619 0.00 0.00 41.96 2.52
323 781 2.027285 TCATCTGCACCCGATCAGAAAA 60.027 45.455 0.00 0.00 41.96 2.29
324 782 2.559698 TCTGCACCCGATCAGAAAAA 57.440 45.000 0.00 0.00 36.50 1.94
388 846 5.549742 TTTTTCTCCATGGCAGACAATTT 57.450 34.783 6.96 0.00 0.00 1.82
389 847 6.662865 TTTTTCTCCATGGCAGACAATTTA 57.337 33.333 6.96 0.00 0.00 1.40
390 848 6.855763 TTTTCTCCATGGCAGACAATTTAT 57.144 33.333 6.96 0.00 0.00 1.40
391 849 6.855763 TTTCTCCATGGCAGACAATTTATT 57.144 33.333 6.96 0.00 0.00 1.40
392 850 5.840243 TCTCCATGGCAGACAATTTATTG 57.160 39.130 6.96 1.03 43.26 1.90
393 851 4.098349 TCTCCATGGCAGACAATTTATTGC 59.902 41.667 6.96 0.00 41.38 3.56
394 852 3.117794 CCATGGCAGACAATTTATTGCG 58.882 45.455 0.00 0.00 41.38 4.85
395 853 3.429272 CCATGGCAGACAATTTATTGCGT 60.429 43.478 0.00 0.00 41.38 5.24
396 854 3.214697 TGGCAGACAATTTATTGCGTG 57.785 42.857 2.46 2.20 41.38 5.34
397 855 2.816672 TGGCAGACAATTTATTGCGTGA 59.183 40.909 2.46 0.00 41.38 4.35
398 856 3.119884 TGGCAGACAATTTATTGCGTGAG 60.120 43.478 2.46 0.00 41.38 3.51
399 857 3.429085 GCAGACAATTTATTGCGTGAGG 58.571 45.455 2.46 0.00 41.38 3.86
400 858 3.119849 GCAGACAATTTATTGCGTGAGGT 60.120 43.478 2.46 0.00 41.38 3.85
401 859 4.615912 GCAGACAATTTATTGCGTGAGGTT 60.616 41.667 2.46 0.00 41.38 3.50
402 860 5.088739 CAGACAATTTATTGCGTGAGGTTC 58.911 41.667 2.46 0.00 41.38 3.62
403 861 4.156008 AGACAATTTATTGCGTGAGGTTCC 59.844 41.667 2.46 0.00 41.38 3.62
404 862 3.192633 ACAATTTATTGCGTGAGGTTCCC 59.807 43.478 2.46 0.00 41.38 3.97
405 863 2.871096 TTTATTGCGTGAGGTTCCCT 57.129 45.000 0.00 0.00 36.03 4.20
406 864 6.832753 ACAATTTATTGCGTGAGGTTCCCTC 61.833 44.000 3.25 3.25 44.57 4.30
418 876 5.311844 GAGGTTCCCTCCAAATATTAGCT 57.688 43.478 0.00 0.00 44.36 3.32
419 877 5.309638 GAGGTTCCCTCCAAATATTAGCTC 58.690 45.833 0.00 0.00 44.36 4.09
420 878 4.726825 AGGTTCCCTCCAAATATTAGCTCA 59.273 41.667 0.00 0.00 0.00 4.26
421 879 5.373854 AGGTTCCCTCCAAATATTAGCTCAT 59.626 40.000 0.00 0.00 0.00 2.90
422 880 6.071320 GGTTCCCTCCAAATATTAGCTCATT 58.929 40.000 0.00 0.00 0.00 2.57
423 881 6.551227 GGTTCCCTCCAAATATTAGCTCATTT 59.449 38.462 0.00 0.00 0.00 2.32
424 882 7.428826 GTTCCCTCCAAATATTAGCTCATTTG 58.571 38.462 16.06 16.06 40.33 2.32
433 891 8.843262 CAAATATTAGCTCATTTGGACATCTGA 58.157 33.333 15.54 0.00 38.10 3.27
434 892 8.618702 AATATTAGCTCATTTGGACATCTGAG 57.381 34.615 0.00 7.08 38.49 3.35
435 893 3.996921 AGCTCATTTGGACATCTGAGT 57.003 42.857 11.08 0.00 37.90 3.41
436 894 6.544928 TTAGCTCATTTGGACATCTGAGTA 57.455 37.500 0.00 3.61 37.90 2.59
437 895 5.426689 AGCTCATTTGGACATCTGAGTAA 57.573 39.130 11.08 0.00 37.90 2.24
438 896 5.181748 AGCTCATTTGGACATCTGAGTAAC 58.818 41.667 11.08 0.00 37.90 2.50
439 897 5.046014 AGCTCATTTGGACATCTGAGTAACT 60.046 40.000 11.08 0.00 37.90 2.24
440 898 5.293079 GCTCATTTGGACATCTGAGTAACTC 59.707 44.000 11.08 0.00 37.90 3.01
441 899 6.611613 TCATTTGGACATCTGAGTAACTCT 57.388 37.500 0.00 0.00 0.00 3.24
442 900 6.634805 TCATTTGGACATCTGAGTAACTCTC 58.365 40.000 0.00 0.00 43.03 3.20
470 928 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
471 929 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
472 930 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
473 931 4.710324 AGACAAATCGGGTCAAAACAGTA 58.290 39.130 0.00 0.00 37.74 2.74
474 932 4.514066 AGACAAATCGGGTCAAAACAGTAC 59.486 41.667 0.00 0.00 37.74 2.73
475 933 4.200874 ACAAATCGGGTCAAAACAGTACA 58.799 39.130 0.00 0.00 0.00 2.90
476 934 4.825085 ACAAATCGGGTCAAAACAGTACAT 59.175 37.500 0.00 0.00 0.00 2.29
477 935 5.153513 CAAATCGGGTCAAAACAGTACATG 58.846 41.667 0.00 0.00 0.00 3.21
478 936 3.755112 TCGGGTCAAAACAGTACATGA 57.245 42.857 0.00 0.00 0.00 3.07
479 937 4.074627 TCGGGTCAAAACAGTACATGAA 57.925 40.909 0.00 0.00 0.00 2.57
480 938 3.810941 TCGGGTCAAAACAGTACATGAAC 59.189 43.478 0.00 0.00 0.00 3.18
481 939 3.562141 CGGGTCAAAACAGTACATGAACA 59.438 43.478 0.00 0.00 31.09 3.18
482 940 4.319477 CGGGTCAAAACAGTACATGAACAG 60.319 45.833 0.00 0.00 31.09 3.16
483 941 4.578928 GGGTCAAAACAGTACATGAACAGT 59.421 41.667 0.00 0.00 31.09 3.55
484 942 5.761234 GGGTCAAAACAGTACATGAACAGTA 59.239 40.000 0.00 0.00 31.09 2.74
485 943 6.261381 GGGTCAAAACAGTACATGAACAGTAA 59.739 38.462 0.00 0.00 31.09 2.24
486 944 7.201750 GGGTCAAAACAGTACATGAACAGTAAA 60.202 37.037 0.00 0.00 31.09 2.01
487 945 7.642586 GGTCAAAACAGTACATGAACAGTAAAC 59.357 37.037 0.00 0.00 29.93 2.01
488 946 8.395633 GTCAAAACAGTACATGAACAGTAAACT 58.604 33.333 0.00 0.00 0.00 2.66
510 968 5.855740 TGTTTTACAGACCCCGAATTTTT 57.144 34.783 0.00 0.00 0.00 1.94
511 969 5.834169 TGTTTTACAGACCCCGAATTTTTC 58.166 37.500 0.00 0.00 0.00 2.29
512 970 5.595133 TGTTTTACAGACCCCGAATTTTTCT 59.405 36.000 0.00 0.00 0.00 2.52
513 971 6.097129 TGTTTTACAGACCCCGAATTTTTCTT 59.903 34.615 0.00 0.00 0.00 2.52
514 972 6.718522 TTTACAGACCCCGAATTTTTCTTT 57.281 33.333 0.00 0.00 0.00 2.52
515 973 6.718522 TTACAGACCCCGAATTTTTCTTTT 57.281 33.333 0.00 0.00 0.00 2.27
516 974 5.607939 ACAGACCCCGAATTTTTCTTTTT 57.392 34.783 0.00 0.00 0.00 1.94
532 990 1.674359 TTTTTGCCGAGAGTTGCTCA 58.326 45.000 0.00 0.00 44.15 4.26
533 991 1.229428 TTTTGCCGAGAGTTGCTCAG 58.771 50.000 0.00 0.00 44.15 3.35
534 992 0.106708 TTTGCCGAGAGTTGCTCAGT 59.893 50.000 0.00 0.00 44.15 3.41
535 993 0.106708 TTGCCGAGAGTTGCTCAGTT 59.893 50.000 0.00 0.00 44.15 3.16
536 994 0.601046 TGCCGAGAGTTGCTCAGTTG 60.601 55.000 0.00 0.00 44.15 3.16
537 995 0.601311 GCCGAGAGTTGCTCAGTTGT 60.601 55.000 0.00 0.00 44.15 3.32
538 996 1.423395 CCGAGAGTTGCTCAGTTGTC 58.577 55.000 0.00 0.00 44.15 3.18
539 997 1.423395 CGAGAGTTGCTCAGTTGTCC 58.577 55.000 0.00 0.00 44.15 4.02
540 998 1.269778 CGAGAGTTGCTCAGTTGTCCA 60.270 52.381 0.00 0.00 44.15 4.02
541 999 2.803133 CGAGAGTTGCTCAGTTGTCCAA 60.803 50.000 0.00 0.00 44.15 3.53
542 1000 3.206150 GAGAGTTGCTCAGTTGTCCAAA 58.794 45.455 0.00 0.00 43.38 3.28
543 1001 3.817647 GAGAGTTGCTCAGTTGTCCAAAT 59.182 43.478 0.00 0.00 43.38 2.32
544 1002 3.817647 AGAGTTGCTCAGTTGTCCAAATC 59.182 43.478 0.00 0.00 33.83 2.17
545 1003 3.554934 AGTTGCTCAGTTGTCCAAATCA 58.445 40.909 0.00 0.00 0.00 2.57
546 1004 4.147321 AGTTGCTCAGTTGTCCAAATCAT 58.853 39.130 0.00 0.00 0.00 2.45
547 1005 5.316167 AGTTGCTCAGTTGTCCAAATCATA 58.684 37.500 0.00 0.00 0.00 2.15
548 1006 5.948162 AGTTGCTCAGTTGTCCAAATCATAT 59.052 36.000 0.00 0.00 0.00 1.78
549 1007 5.823209 TGCTCAGTTGTCCAAATCATATG 57.177 39.130 0.00 0.00 0.00 1.78
550 1008 5.499313 TGCTCAGTTGTCCAAATCATATGA 58.501 37.500 8.10 8.10 0.00 2.15
551 1009 5.945191 TGCTCAGTTGTCCAAATCATATGAA 59.055 36.000 9.99 0.00 0.00 2.57
552 1010 6.433716 TGCTCAGTTGTCCAAATCATATGAAA 59.566 34.615 9.99 0.00 0.00 2.69
553 1011 7.123098 TGCTCAGTTGTCCAAATCATATGAAAT 59.877 33.333 9.99 0.00 0.00 2.17
554 1012 7.977853 GCTCAGTTGTCCAAATCATATGAAATT 59.022 33.333 9.99 5.44 0.00 1.82
555 1013 9.865321 CTCAGTTGTCCAAATCATATGAAATTT 57.135 29.630 9.99 3.98 0.00 1.82
556 1014 9.642327 TCAGTTGTCCAAATCATATGAAATTTG 57.358 29.630 18.74 18.74 40.78 2.32
563 1021 6.804677 CAAATCATATGAAATTTGGGTCGGA 58.195 36.000 18.22 0.00 38.58 4.55
564 1022 6.391227 AATCATATGAAATTTGGGTCGGAC 57.609 37.500 9.99 0.00 0.00 4.79
565 1023 4.204012 TCATATGAAATTTGGGTCGGACC 58.796 43.478 19.06 19.06 37.60 4.46
566 1024 2.899303 ATGAAATTTGGGTCGGACCT 57.101 45.000 25.39 5.58 38.64 3.85
567 1025 2.194201 TGAAATTTGGGTCGGACCTC 57.806 50.000 25.39 16.17 38.64 3.85
568 1026 1.422024 TGAAATTTGGGTCGGACCTCA 59.578 47.619 25.39 18.40 38.64 3.86
569 1027 1.810755 GAAATTTGGGTCGGACCTCAC 59.189 52.381 25.39 10.70 38.64 3.51
570 1028 0.768622 AATTTGGGTCGGACCTCACA 59.231 50.000 25.39 15.12 38.64 3.58
571 1029 0.036306 ATTTGGGTCGGACCTCACAC 59.964 55.000 25.39 9.98 38.64 3.82
572 1030 1.338890 TTTGGGTCGGACCTCACACA 61.339 55.000 25.39 12.46 38.64 3.72
573 1031 2.035237 TTGGGTCGGACCTCACACAC 62.035 60.000 25.39 8.58 38.64 3.82
574 1032 2.342648 GGTCGGACCTCACACACC 59.657 66.667 19.92 0.00 34.73 4.16
575 1033 2.504274 GGTCGGACCTCACACACCA 61.504 63.158 19.92 0.00 34.73 4.17
576 1034 1.444250 GTCGGACCTCACACACCAA 59.556 57.895 0.00 0.00 0.00 3.67
577 1035 0.179067 GTCGGACCTCACACACCAAA 60.179 55.000 0.00 0.00 0.00 3.28
578 1036 0.762418 TCGGACCTCACACACCAAAT 59.238 50.000 0.00 0.00 0.00 2.32
579 1037 1.142060 TCGGACCTCACACACCAAATT 59.858 47.619 0.00 0.00 0.00 1.82
580 1038 1.266718 CGGACCTCACACACCAAATTG 59.733 52.381 0.00 0.00 0.00 2.32
581 1039 2.306847 GGACCTCACACACCAAATTGT 58.693 47.619 0.00 0.00 0.00 2.71
582 1040 2.293399 GGACCTCACACACCAAATTGTC 59.707 50.000 0.00 0.00 0.00 3.18
583 1041 3.214328 GACCTCACACACCAAATTGTCT 58.786 45.455 0.00 0.00 0.00 3.41
584 1042 4.385825 GACCTCACACACCAAATTGTCTA 58.614 43.478 0.00 0.00 0.00 2.59
585 1043 4.134563 ACCTCACACACCAAATTGTCTAC 58.865 43.478 0.00 0.00 0.00 2.59
586 1044 3.502211 CCTCACACACCAAATTGTCTACC 59.498 47.826 0.00 0.00 0.00 3.18
587 1045 4.133820 CTCACACACCAAATTGTCTACCA 58.866 43.478 0.00 0.00 0.00 3.25
588 1046 4.724399 TCACACACCAAATTGTCTACCAT 58.276 39.130 0.00 0.00 0.00 3.55
589 1047 4.518590 TCACACACCAAATTGTCTACCATG 59.481 41.667 0.00 0.00 0.00 3.66
590 1048 3.826157 ACACACCAAATTGTCTACCATGG 59.174 43.478 11.19 11.19 0.00 3.66
591 1049 4.078537 CACACCAAATTGTCTACCATGGA 58.921 43.478 21.47 0.67 0.00 3.41
592 1050 4.522405 CACACCAAATTGTCTACCATGGAA 59.478 41.667 21.47 1.18 0.00 3.53
593 1051 5.010516 CACACCAAATTGTCTACCATGGAAA 59.989 40.000 21.47 4.94 0.00 3.13
594 1052 5.600484 ACACCAAATTGTCTACCATGGAAAA 59.400 36.000 21.47 5.30 0.00 2.29
595 1053 6.098982 ACACCAAATTGTCTACCATGGAAAAA 59.901 34.615 21.47 5.17 0.00 1.94
659 1117 5.798125 TTTTTAATCAACATGGGTGCAGA 57.202 34.783 0.00 0.00 0.00 4.26
660 1118 5.999205 TTTTAATCAACATGGGTGCAGAT 57.001 34.783 0.00 0.00 0.00 2.90
661 1119 4.987408 TTAATCAACATGGGTGCAGATG 57.013 40.909 0.00 0.00 0.00 2.90
662 1120 2.812836 ATCAACATGGGTGCAGATGA 57.187 45.000 0.00 0.00 0.00 2.92
663 1121 2.118313 TCAACATGGGTGCAGATGAG 57.882 50.000 0.00 1.12 0.00 2.90
664 1122 0.454600 CAACATGGGTGCAGATGAGC 59.545 55.000 0.00 0.00 0.00 4.26
665 1123 0.682209 AACATGGGTGCAGATGAGCC 60.682 55.000 0.00 0.00 0.00 4.70
666 1124 1.826921 CATGGGTGCAGATGAGCCC 60.827 63.158 0.81 0.81 41.42 5.19
667 1125 3.411114 ATGGGTGCAGATGAGCCCG 62.411 63.158 3.57 0.00 43.89 6.13
679 1137 2.743928 AGCCCGCGCTCAGAAAAG 60.744 61.111 5.56 0.00 43.95 2.27
680 1138 3.804193 GCCCGCGCTCAGAAAAGG 61.804 66.667 5.56 0.00 0.00 3.11
681 1139 2.047274 CCCGCGCTCAGAAAAGGA 60.047 61.111 5.56 0.00 0.00 3.36
682 1140 1.450312 CCCGCGCTCAGAAAAGGAT 60.450 57.895 5.56 0.00 0.00 3.24
683 1141 1.026718 CCCGCGCTCAGAAAAGGATT 61.027 55.000 5.56 0.00 0.00 3.01
684 1142 0.804989 CCGCGCTCAGAAAAGGATTT 59.195 50.000 5.56 0.00 42.41 2.17
702 1160 9.594478 AAAGGATTTTCGAAAACTAATGTGTTT 57.406 25.926 24.68 12.57 37.00 2.83
713 1171 8.736751 AAAACTAATGTGTTTTCGCGATATTT 57.263 26.923 10.88 0.00 43.95 1.40
714 1172 9.828852 AAAACTAATGTGTTTTCGCGATATTTA 57.171 25.926 10.88 0.00 43.95 1.40
715 1173 8.816204 AACTAATGTGTTTTCGCGATATTTAC 57.184 30.769 10.88 6.86 0.00 2.01
716 1174 8.193250 ACTAATGTGTTTTCGCGATATTTACT 57.807 30.769 10.88 0.00 0.00 2.24
717 1175 8.662141 ACTAATGTGTTTTCGCGATATTTACTT 58.338 29.630 10.88 2.37 0.00 2.24
719 1177 8.816204 AATGTGTTTTCGCGATATTTACTTAC 57.184 30.769 10.88 0.00 0.00 2.34
720 1178 7.585286 TGTGTTTTCGCGATATTTACTTACT 57.415 32.000 10.88 0.00 0.00 2.24
721 1179 7.669098 TGTGTTTTCGCGATATTTACTTACTC 58.331 34.615 10.88 0.17 0.00 2.59
722 1180 7.115553 GTGTTTTCGCGATATTTACTTACTCC 58.884 38.462 10.88 0.00 0.00 3.85
723 1181 6.256321 TGTTTTCGCGATATTTACTTACTCCC 59.744 38.462 10.88 0.00 0.00 4.30
724 1182 5.779529 TTCGCGATATTTACTTACTCCCT 57.220 39.130 10.88 0.00 0.00 4.20
725 1183 5.368256 TCGCGATATTTACTTACTCCCTC 57.632 43.478 3.71 0.00 0.00 4.30
726 1184 4.217118 TCGCGATATTTACTTACTCCCTCC 59.783 45.833 3.71 0.00 0.00 4.30
727 1185 4.483311 GCGATATTTACTTACTCCCTCCG 58.517 47.826 0.00 0.00 0.00 4.63
740 1198 4.781934 ACTCCCTCCGATCCAAATTAAAG 58.218 43.478 0.00 0.00 0.00 1.85
741 1199 4.227527 ACTCCCTCCGATCCAAATTAAAGT 59.772 41.667 0.00 0.00 0.00 2.66
742 1200 5.187621 TCCCTCCGATCCAAATTAAAGTT 57.812 39.130 0.00 0.00 0.00 2.66
743 1201 4.947388 TCCCTCCGATCCAAATTAAAGTTG 59.053 41.667 0.00 0.00 0.00 3.16
744 1202 4.705023 CCCTCCGATCCAAATTAAAGTTGT 59.295 41.667 0.00 0.00 0.00 3.32
745 1203 5.883673 CCCTCCGATCCAAATTAAAGTTGTA 59.116 40.000 0.00 0.00 0.00 2.41
746 1204 6.546034 CCCTCCGATCCAAATTAAAGTTGTAT 59.454 38.462 0.00 0.00 0.00 2.29
747 1205 7.255139 CCCTCCGATCCAAATTAAAGTTGTATC 60.255 40.741 0.00 0.00 0.00 2.24
748 1206 7.241663 TCCGATCCAAATTAAAGTTGTATCG 57.758 36.000 16.62 16.62 41.66 2.92
749 1207 7.042950 TCCGATCCAAATTAAAGTTGTATCGA 58.957 34.615 21.47 11.43 43.47 3.59
750 1208 7.549842 TCCGATCCAAATTAAAGTTGTATCGAA 59.450 33.333 21.47 7.85 43.47 3.71
751 1209 7.850982 CCGATCCAAATTAAAGTTGTATCGAAG 59.149 37.037 21.47 9.81 43.47 3.79
752 1210 7.373441 CGATCCAAATTAAAGTTGTATCGAAGC 59.627 37.037 17.80 0.00 43.47 3.86
753 1211 7.681939 TCCAAATTAAAGTTGTATCGAAGCT 57.318 32.000 0.00 0.00 0.00 3.74
754 1212 7.526608 TCCAAATTAAAGTTGTATCGAAGCTG 58.473 34.615 0.00 0.00 0.00 4.24
755 1213 7.174253 TCCAAATTAAAGTTGTATCGAAGCTGT 59.826 33.333 0.00 0.00 0.00 4.40
756 1214 8.447833 CCAAATTAAAGTTGTATCGAAGCTGTA 58.552 33.333 0.00 0.00 0.00 2.74
757 1215 9.262472 CAAATTAAAGTTGTATCGAAGCTGTAC 57.738 33.333 0.00 0.00 0.00 2.90
768 1235 4.890088 TCGAAGCTGTACCAAAGTTGTAT 58.110 39.130 0.00 0.00 0.00 2.29
773 1240 8.325997 CGAAGCTGTACCAAAGTTGTATTATAC 58.674 37.037 0.00 0.00 0.00 1.47
782 1249 6.260050 CCAAAGTTGTATTATACCTGCGTCAT 59.740 38.462 0.00 0.00 0.00 3.06
1194 1669 1.520666 CGCAGTAACGGAAGGGGAT 59.479 57.895 0.00 0.00 0.00 3.85
1373 1854 2.372264 TCTGATACGGTTAGCGTCCTT 58.628 47.619 13.99 0.00 0.00 3.36
1628 2109 7.721402 ACATGTGTTTTCCAGCAAATTAGTTA 58.279 30.769 0.00 0.00 0.00 2.24
1804 2293 7.570140 GCAAATAGGAACATGATGTATCTCGTG 60.570 40.741 0.00 1.08 38.00 4.35
1891 2395 9.851686 AGTAAATGATTATCAACCAGCAGAATA 57.148 29.630 0.00 0.00 0.00 1.75
2235 3096 6.539649 TGTTTAATGTTGTCTTCTCCTTCG 57.460 37.500 0.00 0.00 0.00 3.79
2275 3136 9.286946 GTATATACTAGCTAAATAACCAGTGCG 57.713 37.037 5.58 0.00 0.00 5.34
2407 3272 4.400567 AGGAGCATTCTACCTGCAATTTTC 59.599 41.667 0.00 0.00 42.15 2.29
2475 3340 3.808174 GCGTCTGTATAGCCCTTTAAAGG 59.192 47.826 25.02 25.02 46.06 3.11
2525 3390 8.142485 AGAAATGGGATTTTGACATCAGATTT 57.858 30.769 0.00 0.00 31.47 2.17
2589 3454 3.193267 GGAACCATGCAGCAATGTTAGAA 59.807 43.478 11.70 0.00 0.00 2.10
2591 3456 5.410355 AACCATGCAGCAATGTTAGAAAT 57.590 34.783 10.36 0.00 0.00 2.17
3121 3987 5.351948 AAACAGGTTACCTTTTTGTGCAT 57.648 34.783 13.97 0.00 32.99 3.96
3126 3992 4.765339 AGGTTACCTTTTTGTGCATAGGTC 59.235 41.667 0.00 0.38 41.16 3.85
3183 4049 1.858458 CAACGCGACCTACATGTATGG 59.142 52.381 15.93 12.10 0.00 2.74
3193 4059 4.473559 ACCTACATGTATGGTTGGCTACTT 59.526 41.667 16.66 0.00 35.00 2.24
3225 4091 1.002069 TGCATCCCTTCAGTTCCCAT 58.998 50.000 0.00 0.00 0.00 4.00
3311 4178 3.181513 CGATGAAGAATGTGCAGTTCCTG 60.182 47.826 7.87 0.00 34.12 3.86
3345 4212 5.640357 TGTAGGAACCACAATGTCGATTAAC 59.360 40.000 0.00 0.00 0.00 2.01
3347 4214 4.007659 GGAACCACAATGTCGATTAACCT 58.992 43.478 0.00 0.00 0.00 3.50
3349 4216 4.280436 ACCACAATGTCGATTAACCTGA 57.720 40.909 0.00 0.00 0.00 3.86
3355 4222 5.529430 ACAATGTCGATTAACCTGACAACAA 59.471 36.000 9.49 0.00 44.90 2.83
3358 4225 6.961359 TGTCGATTAACCTGACAACAATAG 57.039 37.500 4.32 0.00 39.50 1.73
3362 4229 7.331193 GTCGATTAACCTGACAACAATAGACTT 59.669 37.037 0.00 0.00 32.13 3.01
3363 4230 8.525316 TCGATTAACCTGACAACAATAGACTTA 58.475 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.762933 TGAATTTCAGGATTTTTCAACTTTAGG 57.237 29.630 0.00 0.00 0.00 2.69
46 47 6.761242 TCATTTCGTCGTATGAATTTCAGGAT 59.239 34.615 5.21 0.00 0.00 3.24
49 50 6.901887 CCTTCATTTCGTCGTATGAATTTCAG 59.098 38.462 18.70 11.03 39.34 3.02
74 75 8.568794 GCCCCAACTATTAGAATTTCATACTTC 58.431 37.037 0.00 0.00 0.00 3.01
77 78 7.284489 TGTGCCCCAACTATTAGAATTTCATAC 59.716 37.037 0.00 0.00 0.00 2.39
98 107 9.638239 TTATCTACATCTTTCAAAATTTGTGCC 57.362 29.630 5.56 0.00 0.00 5.01
122 131 9.445786 CTTTTCAGCGACTTAAGAAAATGTTTA 57.554 29.630 10.09 0.00 38.73 2.01
124 133 6.918022 CCTTTTCAGCGACTTAAGAAAATGTT 59.082 34.615 10.09 0.00 38.73 2.71
130 139 7.414098 GCAATATCCTTTTCAGCGACTTAAGAA 60.414 37.037 10.09 0.00 0.00 2.52
132 141 6.195165 GCAATATCCTTTTCAGCGACTTAAG 58.805 40.000 0.00 0.00 0.00 1.85
137 146 2.033424 GGGCAATATCCTTTTCAGCGAC 59.967 50.000 0.00 0.00 0.00 5.19
138 147 2.297701 GGGCAATATCCTTTTCAGCGA 58.702 47.619 0.00 0.00 0.00 4.93
139 148 2.023673 TGGGCAATATCCTTTTCAGCG 58.976 47.619 0.00 0.00 0.00 5.18
140 149 4.160252 TCTTTGGGCAATATCCTTTTCAGC 59.840 41.667 0.00 0.00 0.00 4.26
146 156 6.441604 ACTTCAATTCTTTGGGCAATATCCTT 59.558 34.615 0.00 0.00 33.44 3.36
180 190 7.878477 TCTTGTCATTTATAAAGTCGAACGT 57.122 32.000 3.94 0.00 0.00 3.99
203 657 3.252458 ACAGTCAATTACGGCCTGTTTTC 59.748 43.478 0.00 0.00 32.72 2.29
206 660 2.151202 CACAGTCAATTACGGCCTGTT 58.849 47.619 0.00 0.00 34.31 3.16
215 670 1.702401 TGGTGGAGGCACAGTCAATTA 59.298 47.619 0.00 0.00 0.00 1.40
223 678 1.051556 TGTGTAGTGGTGGAGGCACA 61.052 55.000 0.00 0.00 34.95 4.57
233 688 2.092323 TCTCGGACAGATGTGTAGTGG 58.908 52.381 0.00 0.00 36.88 4.00
235 690 3.566322 GCTATCTCGGACAGATGTGTAGT 59.434 47.826 0.00 0.00 42.37 2.73
238 694 2.099921 GTGCTATCTCGGACAGATGTGT 59.900 50.000 0.00 0.00 42.37 3.72
241 697 1.335415 CGGTGCTATCTCGGACAGATG 60.335 57.143 0.00 0.00 42.37 2.90
242 698 0.955178 CGGTGCTATCTCGGACAGAT 59.045 55.000 0.00 0.00 44.73 2.90
246 702 2.353607 CGCGGTGCTATCTCGGAC 60.354 66.667 0.00 0.00 0.00 4.79
264 722 3.235195 GCTGCACTCGATAGTTATACCG 58.765 50.000 0.00 0.00 31.97 4.02
265 723 3.058432 TCGCTGCACTCGATAGTTATACC 60.058 47.826 0.00 0.00 31.97 2.73
266 724 4.143194 TCGCTGCACTCGATAGTTATAC 57.857 45.455 0.00 0.00 31.97 1.47
267 725 5.372547 AATCGCTGCACTCGATAGTTATA 57.627 39.130 16.52 0.00 44.80 0.98
268 726 3.924918 ATCGCTGCACTCGATAGTTAT 57.075 42.857 15.12 0.00 43.88 1.89
269 727 3.710326 AATCGCTGCACTCGATAGTTA 57.290 42.857 16.52 0.00 44.80 2.24
270 728 2.586258 AATCGCTGCACTCGATAGTT 57.414 45.000 16.52 3.25 44.80 2.24
271 729 2.196749 CAAATCGCTGCACTCGATAGT 58.803 47.619 16.52 7.78 44.80 2.12
272 730 1.524355 CCAAATCGCTGCACTCGATAG 59.476 52.381 16.52 12.78 44.80 2.08
273 731 1.134818 ACCAAATCGCTGCACTCGATA 60.135 47.619 16.52 0.00 44.80 2.92
275 733 1.005037 ACCAAATCGCTGCACTCGA 60.005 52.632 8.51 8.51 40.45 4.04
276 734 1.133253 CACCAAATCGCTGCACTCG 59.867 57.895 0.00 0.00 0.00 4.18
277 735 1.154150 GCACCAAATCGCTGCACTC 60.154 57.895 0.00 0.00 0.00 3.51
278 736 2.629656 GGCACCAAATCGCTGCACT 61.630 57.895 0.00 0.00 32.20 4.40
279 737 2.126346 GGCACCAAATCGCTGCAC 60.126 61.111 0.00 0.00 32.20 4.57
292 750 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
293 751 3.332385 TGCAGATGAGCCTGGGCA 61.332 61.111 14.39 0.00 44.88 5.36
294 752 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
295 753 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
296 754 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
297 755 2.321263 ATCGGGTGCAGATGAGCCTG 62.321 60.000 0.00 0.00 37.23 4.85
298 756 2.037620 GATCGGGTGCAGATGAGCCT 62.038 60.000 0.00 0.00 0.00 4.58
299 757 1.596477 GATCGGGTGCAGATGAGCC 60.596 63.158 0.00 0.00 0.00 4.70
300 758 0.879400 CTGATCGGGTGCAGATGAGC 60.879 60.000 0.00 0.00 34.06 4.26
301 759 0.749049 TCTGATCGGGTGCAGATGAG 59.251 55.000 0.62 0.00 36.31 2.90
302 760 1.194218 TTCTGATCGGGTGCAGATGA 58.806 50.000 0.62 0.00 40.51 2.92
303 761 2.028420 TTTCTGATCGGGTGCAGATG 57.972 50.000 0.62 0.00 40.51 2.90
304 762 2.787473 TTTTCTGATCGGGTGCAGAT 57.213 45.000 0.62 0.00 40.51 2.90
305 763 2.559698 TTTTTCTGATCGGGTGCAGA 57.440 45.000 0.62 0.00 39.24 4.26
366 824 5.549742 AAATTGTCTGCCATGGAGAAAAA 57.450 34.783 18.40 12.92 0.00 1.94
367 825 6.855763 ATAAATTGTCTGCCATGGAGAAAA 57.144 33.333 18.40 16.28 0.00 2.29
368 826 6.632909 CAATAAATTGTCTGCCATGGAGAAA 58.367 36.000 18.40 7.94 33.22 2.52
369 827 5.394443 GCAATAAATTGTCTGCCATGGAGAA 60.394 40.000 18.40 0.00 39.88 2.87
370 828 4.098349 GCAATAAATTGTCTGCCATGGAGA 59.902 41.667 18.40 12.71 39.88 3.71
371 829 4.365723 GCAATAAATTGTCTGCCATGGAG 58.634 43.478 18.40 10.38 39.88 3.86
372 830 3.181488 CGCAATAAATTGTCTGCCATGGA 60.181 43.478 18.40 0.00 39.88 3.41
373 831 3.117794 CGCAATAAATTGTCTGCCATGG 58.882 45.455 7.63 7.63 39.88 3.66
374 832 3.548668 CACGCAATAAATTGTCTGCCATG 59.451 43.478 4.71 0.00 39.88 3.66
375 833 3.443329 TCACGCAATAAATTGTCTGCCAT 59.557 39.130 4.71 0.00 39.88 4.40
376 834 2.816672 TCACGCAATAAATTGTCTGCCA 59.183 40.909 4.71 0.00 39.88 4.92
377 835 3.429085 CTCACGCAATAAATTGTCTGCC 58.571 45.455 4.71 0.00 39.88 4.85
378 836 3.119849 ACCTCACGCAATAAATTGTCTGC 60.120 43.478 4.71 0.00 39.88 4.26
379 837 4.685169 ACCTCACGCAATAAATTGTCTG 57.315 40.909 4.71 1.24 39.88 3.51
380 838 4.156008 GGAACCTCACGCAATAAATTGTCT 59.844 41.667 4.71 0.00 39.88 3.41
381 839 4.412207 GGAACCTCACGCAATAAATTGTC 58.588 43.478 4.71 0.00 39.88 3.18
382 840 4.434713 GGAACCTCACGCAATAAATTGT 57.565 40.909 4.71 0.00 39.88 2.71
398 856 7.470563 CAAATGAGCTAATATTTGGAGGGAACC 60.471 40.741 16.80 0.00 43.14 3.62
399 857 7.428826 CAAATGAGCTAATATTTGGAGGGAAC 58.571 38.462 16.80 0.00 39.44 3.62
400 858 7.587037 CAAATGAGCTAATATTTGGAGGGAA 57.413 36.000 16.80 0.00 39.44 3.97
407 865 8.843262 TCAGATGTCCAAATGAGCTAATATTTG 58.157 33.333 17.30 17.30 41.58 2.32
408 866 8.985315 TCAGATGTCCAAATGAGCTAATATTT 57.015 30.769 0.00 0.00 0.00 1.40
409 867 8.216423 ACTCAGATGTCCAAATGAGCTAATATT 58.784 33.333 10.38 0.00 42.33 1.28
410 868 7.743749 ACTCAGATGTCCAAATGAGCTAATAT 58.256 34.615 10.38 0.00 42.33 1.28
411 869 7.129457 ACTCAGATGTCCAAATGAGCTAATA 57.871 36.000 10.38 0.00 42.33 0.98
412 870 5.999044 ACTCAGATGTCCAAATGAGCTAAT 58.001 37.500 10.38 0.00 42.33 1.73
413 871 5.426689 ACTCAGATGTCCAAATGAGCTAA 57.573 39.130 10.38 0.00 42.33 3.09
414 872 6.155221 AGTTACTCAGATGTCCAAATGAGCTA 59.845 38.462 10.38 3.16 42.33 3.32
415 873 3.996921 ACTCAGATGTCCAAATGAGCT 57.003 42.857 10.38 0.00 42.33 4.09
416 874 5.181748 AGTTACTCAGATGTCCAAATGAGC 58.818 41.667 10.38 0.00 42.33 4.26
417 875 6.638610 AGAGTTACTCAGATGTCCAAATGAG 58.361 40.000 15.23 9.37 43.81 2.90
418 876 6.611613 AGAGTTACTCAGATGTCCAAATGA 57.388 37.500 15.23 0.00 32.06 2.57
419 877 6.900568 GAGAGTTACTCAGATGTCCAAATG 57.099 41.667 15.23 0.00 44.36 2.32
447 905 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
448 906 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
449 907 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
450 908 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
451 909 3.551846 ACTGTTTTGACCCGATTTGTCT 58.448 40.909 0.00 0.00 33.83 3.41
452 910 3.982576 ACTGTTTTGACCCGATTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
453 911 4.200874 TGTACTGTTTTGACCCGATTTGT 58.799 39.130 0.00 0.00 0.00 2.83
454 912 4.822036 TGTACTGTTTTGACCCGATTTG 57.178 40.909 0.00 0.00 0.00 2.32
455 913 5.067273 TCATGTACTGTTTTGACCCGATTT 58.933 37.500 0.00 0.00 0.00 2.17
456 914 4.647611 TCATGTACTGTTTTGACCCGATT 58.352 39.130 0.00 0.00 0.00 3.34
457 915 4.280436 TCATGTACTGTTTTGACCCGAT 57.720 40.909 0.00 0.00 0.00 4.18
458 916 3.755112 TCATGTACTGTTTTGACCCGA 57.245 42.857 0.00 0.00 0.00 5.14
459 917 3.562141 TGTTCATGTACTGTTTTGACCCG 59.438 43.478 4.01 0.00 0.00 5.28
460 918 4.578928 ACTGTTCATGTACTGTTTTGACCC 59.421 41.667 8.82 0.00 0.00 4.46
461 919 5.751243 ACTGTTCATGTACTGTTTTGACC 57.249 39.130 8.82 0.00 0.00 4.02
462 920 8.395633 AGTTTACTGTTCATGTACTGTTTTGAC 58.604 33.333 17.65 11.94 33.15 3.18
463 921 8.394877 CAGTTTACTGTTCATGTACTGTTTTGA 58.605 33.333 17.65 0.59 39.09 2.69
464 922 8.547091 CAGTTTACTGTTCATGTACTGTTTTG 57.453 34.615 17.65 9.30 39.09 2.44
480 938 4.212636 CGGGGTCTGTAAAACAGTTTACTG 59.787 45.833 8.29 8.29 46.29 2.74
481 939 4.101430 TCGGGGTCTGTAAAACAGTTTACT 59.899 41.667 0.00 0.00 46.29 2.24
482 940 4.379652 TCGGGGTCTGTAAAACAGTTTAC 58.620 43.478 0.00 0.00 46.03 2.01
483 941 4.686191 TCGGGGTCTGTAAAACAGTTTA 57.314 40.909 0.00 0.00 46.03 2.01
484 942 3.564053 TCGGGGTCTGTAAAACAGTTT 57.436 42.857 6.93 0.00 46.03 2.66
485 943 3.564053 TTCGGGGTCTGTAAAACAGTT 57.436 42.857 6.93 0.00 46.03 3.16
486 944 3.782656 ATTCGGGGTCTGTAAAACAGT 57.217 42.857 6.93 0.00 46.03 3.55
487 945 6.238925 AGAAAAATTCGGGGTCTGTAAAACAG 60.239 38.462 0.50 0.50 40.12 3.16
488 946 5.595133 AGAAAAATTCGGGGTCTGTAAAACA 59.405 36.000 0.00 0.00 34.02 2.83
489 947 6.080648 AGAAAAATTCGGGGTCTGTAAAAC 57.919 37.500 0.00 0.00 34.02 2.43
490 948 6.718522 AAGAAAAATTCGGGGTCTGTAAAA 57.281 33.333 0.00 0.00 34.02 1.52
491 949 6.718522 AAAGAAAAATTCGGGGTCTGTAAA 57.281 33.333 0.00 0.00 34.02 2.01
492 950 6.718522 AAAAGAAAAATTCGGGGTCTGTAA 57.281 33.333 0.00 0.00 34.02 2.41
493 951 6.718522 AAAAAGAAAAATTCGGGGTCTGTA 57.281 33.333 0.00 0.00 34.02 2.74
494 952 5.607939 AAAAAGAAAAATTCGGGGTCTGT 57.392 34.783 0.00 0.00 34.02 3.41
513 971 1.603802 CTGAGCAACTCTCGGCAAAAA 59.396 47.619 0.00 0.00 44.86 1.94
514 972 1.229428 CTGAGCAACTCTCGGCAAAA 58.771 50.000 0.00 0.00 44.86 2.44
515 973 2.918571 CTGAGCAACTCTCGGCAAA 58.081 52.632 0.00 0.00 44.86 3.68
516 974 4.681421 CTGAGCAACTCTCGGCAA 57.319 55.556 0.00 0.00 44.86 4.52
520 978 1.269778 TGGACAACTGAGCAACTCTCG 60.270 52.381 0.00 0.00 44.86 4.04
521 979 2.533266 TGGACAACTGAGCAACTCTC 57.467 50.000 0.00 0.00 42.23 3.20
522 980 3.281727 TTTGGACAACTGAGCAACTCT 57.718 42.857 0.00 0.00 0.00 3.24
523 981 3.565482 TGATTTGGACAACTGAGCAACTC 59.435 43.478 0.00 0.00 0.00 3.01
524 982 3.554934 TGATTTGGACAACTGAGCAACT 58.445 40.909 0.00 0.00 0.00 3.16
525 983 3.988379 TGATTTGGACAACTGAGCAAC 57.012 42.857 0.00 0.00 0.00 4.17
526 984 5.945191 TCATATGATTTGGACAACTGAGCAA 59.055 36.000 0.00 0.00 0.00 3.91
527 985 5.499313 TCATATGATTTGGACAACTGAGCA 58.501 37.500 0.00 0.00 0.00 4.26
528 986 6.441093 TTCATATGATTTGGACAACTGAGC 57.559 37.500 6.17 0.00 0.00 4.26
529 987 9.865321 AAATTTCATATGATTTGGACAACTGAG 57.135 29.630 6.17 0.00 0.00 3.35
530 988 9.642327 CAAATTTCATATGATTTGGACAACTGA 57.358 29.630 18.22 0.00 38.79 3.41
539 997 6.697019 GTCCGACCCAAATTTCATATGATTTG 59.303 38.462 18.74 18.74 40.95 2.32
540 998 6.183360 GGTCCGACCCAAATTTCATATGATTT 60.183 38.462 6.17 2.31 30.04 2.17
541 999 5.301805 GGTCCGACCCAAATTTCATATGATT 59.698 40.000 6.17 0.00 30.04 2.57
542 1000 4.827284 GGTCCGACCCAAATTTCATATGAT 59.173 41.667 6.17 0.00 30.04 2.45
543 1001 4.080015 AGGTCCGACCCAAATTTCATATGA 60.080 41.667 14.32 0.00 39.75 2.15
544 1002 4.207165 AGGTCCGACCCAAATTTCATATG 58.793 43.478 14.32 0.00 39.75 1.78
545 1003 4.080015 TGAGGTCCGACCCAAATTTCATAT 60.080 41.667 14.32 0.00 39.75 1.78
546 1004 3.264706 TGAGGTCCGACCCAAATTTCATA 59.735 43.478 14.32 0.00 39.75 2.15
547 1005 2.041081 TGAGGTCCGACCCAAATTTCAT 59.959 45.455 14.32 0.00 39.75 2.57
548 1006 1.422024 TGAGGTCCGACCCAAATTTCA 59.578 47.619 14.32 7.34 39.75 2.69
549 1007 1.810755 GTGAGGTCCGACCCAAATTTC 59.189 52.381 14.32 4.72 39.75 2.17
550 1008 1.144093 TGTGAGGTCCGACCCAAATTT 59.856 47.619 14.32 0.00 39.75 1.82
551 1009 0.768622 TGTGAGGTCCGACCCAAATT 59.231 50.000 14.32 0.00 39.75 1.82
552 1010 0.036306 GTGTGAGGTCCGACCCAAAT 59.964 55.000 14.32 0.00 39.75 2.32
553 1011 1.338890 TGTGTGAGGTCCGACCCAAA 61.339 55.000 14.32 4.53 39.75 3.28
554 1012 1.762858 TGTGTGAGGTCCGACCCAA 60.763 57.895 14.32 0.00 39.75 4.12
555 1013 2.123208 TGTGTGAGGTCCGACCCA 60.123 61.111 14.32 9.07 39.75 4.51
556 1014 2.342648 GTGTGTGAGGTCCGACCC 59.657 66.667 14.32 6.53 39.75 4.46
557 1015 2.035237 TTGGTGTGTGAGGTCCGACC 62.035 60.000 9.81 9.81 38.99 4.79
558 1016 0.179067 TTTGGTGTGTGAGGTCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
559 1017 0.762418 ATTTGGTGTGTGAGGTCCGA 59.238 50.000 0.00 0.00 0.00 4.55
560 1018 1.266718 CAATTTGGTGTGTGAGGTCCG 59.733 52.381 0.00 0.00 0.00 4.79
561 1019 2.293399 GACAATTTGGTGTGTGAGGTCC 59.707 50.000 0.78 0.00 0.00 4.46
562 1020 3.214328 AGACAATTTGGTGTGTGAGGTC 58.786 45.455 0.78 0.00 0.00 3.85
563 1021 3.297134 AGACAATTTGGTGTGTGAGGT 57.703 42.857 0.78 0.00 0.00 3.85
564 1022 3.502211 GGTAGACAATTTGGTGTGTGAGG 59.498 47.826 0.78 0.00 0.00 3.86
565 1023 4.133820 TGGTAGACAATTTGGTGTGTGAG 58.866 43.478 0.78 0.00 0.00 3.51
566 1024 4.157849 TGGTAGACAATTTGGTGTGTGA 57.842 40.909 0.78 0.00 0.00 3.58
567 1025 4.321156 CCATGGTAGACAATTTGGTGTGTG 60.321 45.833 2.57 0.00 0.00 3.82
568 1026 3.826157 CCATGGTAGACAATTTGGTGTGT 59.174 43.478 2.57 0.00 0.00 3.72
569 1027 4.078537 TCCATGGTAGACAATTTGGTGTG 58.921 43.478 12.58 0.00 30.41 3.82
570 1028 4.380843 TCCATGGTAGACAATTTGGTGT 57.619 40.909 12.58 0.00 30.41 4.16
571 1029 5.720371 TTTCCATGGTAGACAATTTGGTG 57.280 39.130 12.58 0.00 30.41 4.17
572 1030 6.739331 TTTTTCCATGGTAGACAATTTGGT 57.261 33.333 12.58 0.00 30.41 3.67
637 1095 5.798125 TCTGCACCCATGTTGATTAAAAA 57.202 34.783 0.00 0.00 0.00 1.94
638 1096 5.479724 TCATCTGCACCCATGTTGATTAAAA 59.520 36.000 0.00 0.00 0.00 1.52
639 1097 5.015515 TCATCTGCACCCATGTTGATTAAA 58.984 37.500 0.00 0.00 0.00 1.52
640 1098 4.598022 TCATCTGCACCCATGTTGATTAA 58.402 39.130 0.00 0.00 0.00 1.40
641 1099 4.201657 CTCATCTGCACCCATGTTGATTA 58.798 43.478 0.00 0.00 0.00 1.75
642 1100 3.021695 CTCATCTGCACCCATGTTGATT 58.978 45.455 0.00 0.00 0.00 2.57
643 1101 2.651455 CTCATCTGCACCCATGTTGAT 58.349 47.619 0.00 0.00 0.00 2.57
644 1102 1.951895 GCTCATCTGCACCCATGTTGA 60.952 52.381 0.00 0.00 0.00 3.18
645 1103 0.454600 GCTCATCTGCACCCATGTTG 59.545 55.000 0.00 0.00 0.00 3.33
646 1104 0.682209 GGCTCATCTGCACCCATGTT 60.682 55.000 0.00 0.00 34.04 2.71
647 1105 1.077212 GGCTCATCTGCACCCATGT 60.077 57.895 0.00 0.00 34.04 3.21
648 1106 1.826921 GGGCTCATCTGCACCCATG 60.827 63.158 2.99 0.00 42.33 3.66
649 1107 2.599597 GGGCTCATCTGCACCCAT 59.400 61.111 2.99 0.00 42.33 4.00
650 1108 4.100084 CGGGCTCATCTGCACCCA 62.100 66.667 8.42 0.00 42.97 4.51
663 1121 3.804193 CCTTTTCTGAGCGCGGGC 61.804 66.667 17.92 17.92 40.37 6.13
664 1122 1.026718 AATCCTTTTCTGAGCGCGGG 61.027 55.000 8.83 0.00 0.00 6.13
665 1123 0.804989 AAATCCTTTTCTGAGCGCGG 59.195 50.000 8.83 0.00 0.00 6.46
666 1124 2.509870 GAAAATCCTTTTCTGAGCGCG 58.490 47.619 0.00 0.00 44.29 6.86
667 1125 2.159627 TCGAAAATCCTTTTCTGAGCGC 59.840 45.455 0.00 0.00 45.23 5.92
668 1126 4.404507 TTCGAAAATCCTTTTCTGAGCG 57.595 40.909 0.00 0.00 45.23 5.03
669 1127 6.209361 AGTTTTCGAAAATCCTTTTCTGAGC 58.791 36.000 24.93 8.47 45.23 4.26
670 1128 9.899226 ATTAGTTTTCGAAAATCCTTTTCTGAG 57.101 29.630 24.93 0.00 45.23 3.35
671 1129 9.677567 CATTAGTTTTCGAAAATCCTTTTCTGA 57.322 29.630 24.93 12.89 45.23 3.27
672 1130 9.463443 ACATTAGTTTTCGAAAATCCTTTTCTG 57.537 29.630 24.93 15.77 45.23 3.02
673 1131 9.463443 CACATTAGTTTTCGAAAATCCTTTTCT 57.537 29.630 24.93 17.10 45.23 2.52
674 1132 9.244799 ACACATTAGTTTTCGAAAATCCTTTTC 57.755 29.630 24.93 11.15 44.25 2.29
675 1133 9.594478 AACACATTAGTTTTCGAAAATCCTTTT 57.406 25.926 24.93 7.58 35.12 2.27
676 1134 9.594478 AAACACATTAGTTTTCGAAAATCCTTT 57.406 25.926 24.93 11.70 38.49 3.11
677 1135 9.594478 AAAACACATTAGTTTTCGAAAATCCTT 57.406 25.926 24.93 13.83 45.73 3.36
689 1147 9.269415 GTAAATATCGCGAAAACACATTAGTTT 57.731 29.630 15.24 2.29 43.13 2.66
690 1148 8.662141 AGTAAATATCGCGAAAACACATTAGTT 58.338 29.630 15.24 6.46 0.00 2.24
691 1149 8.193250 AGTAAATATCGCGAAAACACATTAGT 57.807 30.769 15.24 6.32 0.00 2.24
693 1151 9.904647 GTAAGTAAATATCGCGAAAACACATTA 57.095 29.630 15.24 5.72 0.00 1.90
694 1152 8.662141 AGTAAGTAAATATCGCGAAAACACATT 58.338 29.630 15.24 6.76 0.00 2.71
695 1153 8.193250 AGTAAGTAAATATCGCGAAAACACAT 57.807 30.769 15.24 3.61 0.00 3.21
696 1154 7.201461 GGAGTAAGTAAATATCGCGAAAACACA 60.201 37.037 15.24 0.00 0.00 3.72
697 1155 7.115553 GGAGTAAGTAAATATCGCGAAAACAC 58.884 38.462 15.24 8.02 0.00 3.32
698 1156 6.256321 GGGAGTAAGTAAATATCGCGAAAACA 59.744 38.462 15.24 0.00 0.00 2.83
699 1157 6.478016 AGGGAGTAAGTAAATATCGCGAAAAC 59.522 38.462 15.24 7.23 0.00 2.43
700 1158 6.576185 AGGGAGTAAGTAAATATCGCGAAAA 58.424 36.000 15.24 4.61 0.00 2.29
701 1159 6.152932 AGGGAGTAAGTAAATATCGCGAAA 57.847 37.500 15.24 0.00 0.00 3.46
702 1160 5.278660 GGAGGGAGTAAGTAAATATCGCGAA 60.279 44.000 15.24 2.68 0.00 4.70
703 1161 4.217118 GGAGGGAGTAAGTAAATATCGCGA 59.783 45.833 13.09 13.09 0.00 5.87
704 1162 4.483311 GGAGGGAGTAAGTAAATATCGCG 58.517 47.826 0.00 0.00 0.00 5.87
705 1163 4.217118 TCGGAGGGAGTAAGTAAATATCGC 59.783 45.833 0.00 0.00 0.00 4.58
706 1164 5.954296 TCGGAGGGAGTAAGTAAATATCG 57.046 43.478 0.00 0.00 0.00 2.92
707 1165 6.436532 TGGATCGGAGGGAGTAAGTAAATATC 59.563 42.308 0.00 0.00 0.00 1.63
708 1166 6.320518 TGGATCGGAGGGAGTAAGTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
709 1167 5.708544 TGGATCGGAGGGAGTAAGTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
710 1168 4.553678 TGGATCGGAGGGAGTAAGTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
711 1169 3.985127 TGGATCGGAGGGAGTAAGTAAA 58.015 45.455 0.00 0.00 0.00 2.01
712 1170 3.675348 TGGATCGGAGGGAGTAAGTAA 57.325 47.619 0.00 0.00 0.00 2.24
713 1171 3.675348 TTGGATCGGAGGGAGTAAGTA 57.325 47.619 0.00 0.00 0.00 2.24
714 1172 2.544844 TTGGATCGGAGGGAGTAAGT 57.455 50.000 0.00 0.00 0.00 2.24
715 1173 4.423625 AATTTGGATCGGAGGGAGTAAG 57.576 45.455 0.00 0.00 0.00 2.34
716 1174 5.961398 TTAATTTGGATCGGAGGGAGTAA 57.039 39.130 0.00 0.00 0.00 2.24
717 1175 5.427481 ACTTTAATTTGGATCGGAGGGAGTA 59.573 40.000 0.00 0.00 0.00 2.59
718 1176 4.227527 ACTTTAATTTGGATCGGAGGGAGT 59.772 41.667 0.00 0.00 0.00 3.85
719 1177 4.781934 ACTTTAATTTGGATCGGAGGGAG 58.218 43.478 0.00 0.00 0.00 4.30
720 1178 4.855298 ACTTTAATTTGGATCGGAGGGA 57.145 40.909 0.00 0.00 0.00 4.20
721 1179 4.705023 ACAACTTTAATTTGGATCGGAGGG 59.295 41.667 0.45 0.00 0.00 4.30
722 1180 5.897377 ACAACTTTAATTTGGATCGGAGG 57.103 39.130 0.45 0.00 0.00 4.30
727 1185 8.398665 AGCTTCGATACAACTTTAATTTGGATC 58.601 33.333 9.40 9.40 39.89 3.36
740 1198 4.689345 ACTTTGGTACAGCTTCGATACAAC 59.311 41.667 0.00 0.00 42.39 3.32
741 1199 4.890088 ACTTTGGTACAGCTTCGATACAA 58.110 39.130 0.00 0.00 42.39 2.41
742 1200 4.530710 ACTTTGGTACAGCTTCGATACA 57.469 40.909 0.00 0.00 42.39 2.29
743 1201 4.689345 ACAACTTTGGTACAGCTTCGATAC 59.311 41.667 0.00 0.00 42.39 2.24
744 1202 4.890088 ACAACTTTGGTACAGCTTCGATA 58.110 39.130 0.00 0.00 42.39 2.92
745 1203 3.740115 ACAACTTTGGTACAGCTTCGAT 58.260 40.909 0.00 0.00 42.39 3.59
746 1204 3.188159 ACAACTTTGGTACAGCTTCGA 57.812 42.857 0.00 0.00 42.39 3.71
747 1205 5.607119 AATACAACTTTGGTACAGCTTCG 57.393 39.130 0.00 0.00 42.39 3.79
748 1206 8.610035 GGTATAATACAACTTTGGTACAGCTTC 58.390 37.037 0.00 0.00 42.39 3.86
749 1207 8.326529 AGGTATAATACAACTTTGGTACAGCTT 58.673 33.333 0.00 0.00 42.39 3.74
750 1208 7.769044 CAGGTATAATACAACTTTGGTACAGCT 59.231 37.037 0.00 0.00 42.39 4.24
751 1209 7.466860 GCAGGTATAATACAACTTTGGTACAGC 60.467 40.741 0.00 0.00 42.39 4.40
752 1210 7.254319 CGCAGGTATAATACAACTTTGGTACAG 60.254 40.741 0.00 0.00 42.39 2.74
753 1211 6.535865 CGCAGGTATAATACAACTTTGGTACA 59.464 38.462 0.00 0.00 0.00 2.90
754 1212 6.536224 ACGCAGGTATAATACAACTTTGGTAC 59.464 38.462 0.00 0.00 0.00 3.34
755 1213 6.642430 ACGCAGGTATAATACAACTTTGGTA 58.358 36.000 0.00 0.00 0.00 3.25
756 1214 5.493809 ACGCAGGTATAATACAACTTTGGT 58.506 37.500 0.00 0.00 0.00 3.67
757 1215 5.583061 TGACGCAGGTATAATACAACTTTGG 59.417 40.000 0.00 0.00 0.00 3.28
773 1240 9.450807 CCTTTAATCTAAATTAAATGACGCAGG 57.549 33.333 4.35 0.00 43.15 4.85
825 1293 7.603024 CGGGTTTTAGGCCAAAATTTGTATTTA 59.397 33.333 5.01 0.00 38.36 1.40
829 1297 4.344390 ACGGGTTTTAGGCCAAAATTTGTA 59.656 37.500 5.01 0.00 38.36 2.41
830 1298 3.134985 ACGGGTTTTAGGCCAAAATTTGT 59.865 39.130 5.01 6.95 38.36 2.83
831 1299 3.734463 ACGGGTTTTAGGCCAAAATTTG 58.266 40.909 5.01 0.00 38.36 2.32
848 1319 2.664916 CTTCATGCTTTTCACAACGGG 58.335 47.619 0.00 0.00 0.00 5.28
908 1379 2.361737 GCCTTCACCTTCTGGCCC 60.362 66.667 0.00 0.00 39.49 5.80
935 1406 1.527370 GAAGGGATGGGGAACGGAG 59.473 63.158 0.00 0.00 0.00 4.63
994 1469 0.749454 AGCAGGGGATTCATCGTTGC 60.749 55.000 0.00 0.00 0.00 4.17
1373 1854 2.922503 TGAACTGCCTGCTCGGGA 60.923 61.111 0.00 0.00 0.00 5.14
1517 1998 1.066787 GGGAAGACGAGGTTGAAGGAG 60.067 57.143 0.00 0.00 0.00 3.69
1628 2109 6.993902 AGCACCAAAAATCATCTTCAACAAAT 59.006 30.769 0.00 0.00 0.00 2.32
1816 2305 6.793349 ACAAGATACATCCTTCGTACAGTAC 58.207 40.000 0.00 0.00 0.00 2.73
1817 2306 8.687292 ATACAAGATACATCCTTCGTACAGTA 57.313 34.615 0.00 0.00 0.00 2.74
1818 2307 5.916661 ACAAGATACATCCTTCGTACAGT 57.083 39.130 0.00 0.00 0.00 3.55
1819 2308 9.776158 GATATACAAGATACATCCTTCGTACAG 57.224 37.037 0.00 0.00 0.00 2.74
1823 2312 9.742144 ACTAGATATACAAGATACATCCTTCGT 57.258 33.333 0.00 0.00 0.00 3.85
1864 2366 9.851686 ATTCTGCTGGTTGATAATCATTTACTA 57.148 29.630 0.00 0.00 0.00 1.82
1865 2367 8.757982 ATTCTGCTGGTTGATAATCATTTACT 57.242 30.769 0.00 0.00 0.00 2.24
1891 2395 7.340232 TCAGCTTGAGGATGCTTGTATATTTTT 59.660 33.333 0.00 0.00 37.44 1.94
1898 2402 3.054875 ACATCAGCTTGAGGATGCTTGTA 60.055 43.478 10.77 0.00 43.64 2.41
2007 2868 8.188799 CAGAAGTAGAATGTGATCCGTTACTAA 58.811 37.037 0.00 0.00 0.00 2.24
2134 2995 3.479006 CGCAAACGATTTCACGAAGAAT 58.521 40.909 0.00 0.00 43.93 2.40
2235 3096 6.752815 GCTAGTATATACAAGAGCGAAATCCC 59.247 42.308 15.18 0.00 0.00 3.85
2270 3131 0.886043 TTCATCTGCAGCAACGCACT 60.886 50.000 9.47 0.00 36.86 4.40
2271 3132 0.040157 TTTCATCTGCAGCAACGCAC 60.040 50.000 9.47 0.00 36.86 5.34
2407 3272 1.087501 GCCCTAGAAAGAAACCAGCG 58.912 55.000 0.00 0.00 0.00 5.18
2475 3340 4.324402 CGTACTTCGTGGGTATACACAAAC 59.676 45.833 9.99 0.00 41.38 2.93
2525 3390 6.964464 TGGCCCTCAGTTACATCTATTTAAA 58.036 36.000 0.00 0.00 0.00 1.52
2626 3491 5.487488 ACCTGGAACATTTGATACAGTAGGA 59.513 40.000 0.00 0.00 38.20 2.94
3121 3987 7.946219 TCAAGGAATATGACCTATTACGACCTA 59.054 37.037 0.00 0.00 35.99 3.08
3169 4035 3.560636 AGCCAACCATACATGTAGGTC 57.439 47.619 20.43 12.29 33.74 3.85
3183 4049 3.746492 ACGAGATGAACAAAGTAGCCAAC 59.254 43.478 0.00 0.00 0.00 3.77
3193 4059 2.083774 GGGATGCAACGAGATGAACAA 58.916 47.619 0.00 0.00 0.00 2.83
3225 4091 8.266473 TCTTAAAGGTGGTACTGTCTTTTAACA 58.734 33.333 11.05 0.00 32.53 2.41
3311 4178 1.244816 GGTTCCTACACCAAACCAGC 58.755 55.000 0.00 0.00 41.69 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.