Multiple sequence alignment - TraesCS1B01G265200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G265200 chr1B 100.000 3920 0 0 1 3920 465976184 465980103 0.000000e+00 7239.0
1 TraesCS1B01G265200 chr1D 93.491 3180 143 28 791 3920 344621160 344617995 0.000000e+00 4667.0
2 TraesCS1B01G265200 chr1A 95.279 2669 63 18 783 3391 444257659 444254994 0.000000e+00 4172.0
3 TraesCS1B01G265200 chr1A 91.587 416 31 3 3506 3920 444254501 444254089 4.390000e-159 571.0
4 TraesCS1B01G265200 chr1A 87.963 108 13 0 3436 3543 444254608 444254501 1.140000e-25 128.0
5 TraesCS1B01G265200 chr1A 100.000 29 0 0 3 31 140354489 140354461 2.000000e-03 54.7
6 TraesCS1B01G265200 chr1A 96.774 31 1 0 3 33 285506470 285506440 7.000000e-03 52.8
7 TraesCS1B01G265200 chr5B 85.230 501 46 10 3426 3920 16196055 16195577 1.270000e-134 490.0
8 TraesCS1B01G265200 chr5B 96.970 33 1 0 3 35 655449908 655449940 5.470000e-04 56.5
9 TraesCS1B01G265200 chr6D 84.064 502 58 11 3429 3918 454210358 454209867 7.670000e-127 464.0
10 TraesCS1B01G265200 chr6D 83.858 508 55 15 3426 3920 391532953 391532460 3.570000e-125 459.0
11 TraesCS1B01G265200 chr4B 84.774 486 49 12 3447 3918 192694688 192694214 7.670000e-127 464.0
12 TraesCS1B01G265200 chr4B 85.466 461 44 10 3473 3920 192698314 192697864 3.570000e-125 459.0
13 TraesCS1B01G265200 chr4B 97.143 35 1 0 4 38 472236210 472236176 4.230000e-05 60.2
14 TraesCS1B01G265200 chr4B 96.970 33 1 0 3 35 37089177 37089209 5.470000e-04 56.5
15 TraesCS1B01G265200 chr4B 100.000 30 0 0 4 33 256344967 256344996 5.470000e-04 56.5
16 TraesCS1B01G265200 chr5D 85.313 463 49 9 3471 3920 539470370 539469914 9.920000e-126 460.0
17 TraesCS1B01G265200 chr4A 84.165 461 47 13 3472 3920 628933283 628933729 1.300000e-114 424.0
18 TraesCS1B01G265200 chr4A 97.059 34 1 0 3 36 575731564 575731597 1.520000e-04 58.4
19 TraesCS1B01G265200 chr7B 100.000 30 0 0 1 30 426523981 426523952 5.470000e-04 56.5
20 TraesCS1B01G265200 chr2B 100.000 30 0 0 3 32 733853324 733853295 5.470000e-04 56.5
21 TraesCS1B01G265200 chr3D 100.000 28 0 0 3436 3463 121209320 121209347 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G265200 chr1B 465976184 465980103 3919 False 7239.000000 7239 100.000000 1 3920 1 chr1B.!!$F1 3919
1 TraesCS1B01G265200 chr1D 344617995 344621160 3165 True 4667.000000 4667 93.491000 791 3920 1 chr1D.!!$R1 3129
2 TraesCS1B01G265200 chr1A 444254089 444257659 3570 True 1623.666667 4172 91.609667 783 3920 3 chr1A.!!$R3 3137
3 TraesCS1B01G265200 chr4B 192694214 192698314 4100 True 461.500000 464 85.120000 3447 3920 2 chr4B.!!$R2 473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.036010 CCCACTGTGACCAGCCTTAG 60.036 60.000 9.86 0.00 42.81 2.18 F
247 248 0.036765 TTGTGCCTAGGGTAGTTGCG 60.037 55.000 11.72 0.00 0.00 4.85 F
755 756 0.389166 CTCACAAGCCCTCAGTCGAC 60.389 60.000 7.70 7.70 0.00 4.20 F
757 758 0.668706 CACAAGCCCTCAGTCGACTG 60.669 60.000 34.76 34.76 45.08 3.51 F
1116 1134 1.737793 CCGCAGCTTTAATTTCGTCCT 59.262 47.619 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1715 1.074889 TGGGAACAGCTTAACCCCTTC 59.925 52.381 14.02 0.0 41.44 3.46 R
2037 2099 1.108727 TGCTGGCAGTTGTCTTTGGG 61.109 55.000 17.16 0.0 0.00 4.12 R
2180 2242 2.729194 AGGTGGTGTTTGTAAACTGCA 58.271 42.857 8.74 0.0 39.59 4.41 R
2202 2264 5.480642 AGGATGATTAGTGGATAGTGCAG 57.519 43.478 0.00 0.0 0.00 4.41 R
2950 3012 3.114606 TGAGGTAGGATCATCCAAGCAA 58.885 45.455 6.42 0.0 39.61 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.301072 TTCTAAATTCCTCCCCACTGTG 57.699 45.455 0.00 0.00 0.00 3.66
22 23 3.526899 TCTAAATTCCTCCCCACTGTGA 58.473 45.455 9.86 0.00 0.00 3.58
23 24 2.586648 AAATTCCTCCCCACTGTGAC 57.413 50.000 9.86 0.00 0.00 3.67
25 26 0.475632 ATTCCTCCCCACTGTGACCA 60.476 55.000 9.86 0.00 0.00 4.02
29 30 3.252284 CCCCACTGTGACCAGCCT 61.252 66.667 9.86 0.00 42.81 4.58
30 31 2.833913 CCCCACTGTGACCAGCCTT 61.834 63.158 9.86 0.00 42.81 4.35
31 32 1.488705 CCCCACTGTGACCAGCCTTA 61.489 60.000 9.86 0.00 42.81 2.69
32 33 0.036010 CCCACTGTGACCAGCCTTAG 60.036 60.000 9.86 0.00 42.81 2.18
33 34 0.976641 CCACTGTGACCAGCCTTAGA 59.023 55.000 9.86 0.00 42.81 2.10
34 35 1.066573 CCACTGTGACCAGCCTTAGAG 60.067 57.143 9.86 0.00 42.81 2.43
35 36 1.895798 CACTGTGACCAGCCTTAGAGA 59.104 52.381 0.32 0.00 42.81 3.10
36 37 1.896465 ACTGTGACCAGCCTTAGAGAC 59.104 52.381 0.00 0.00 42.81 3.36
39 40 0.898320 TGACCAGCCTTAGAGACTGC 59.102 55.000 0.00 0.00 0.00 4.40
41 42 1.136110 GACCAGCCTTAGAGACTGCTC 59.864 57.143 0.00 0.00 41.62 4.26
43 44 0.527385 CAGCCTTAGAGACTGCTCGC 60.527 60.000 0.00 0.00 45.98 5.03
44 45 0.967887 AGCCTTAGAGACTGCTCGCA 60.968 55.000 0.00 0.00 45.98 5.10
45 46 0.108615 GCCTTAGAGACTGCTCGCAA 60.109 55.000 0.00 0.00 45.98 4.85
46 47 1.919918 CCTTAGAGACTGCTCGCAAG 58.080 55.000 0.00 0.00 45.98 4.01
49 50 0.323451 TAGAGACTGCTCGCAAGGGA 60.323 55.000 0.00 0.00 44.69 4.20
51 52 0.107945 GAGACTGCTCGCAAGGGAAT 60.108 55.000 0.00 0.00 44.69 3.01
53 54 0.729690 GACTGCTCGCAAGGGAATTC 59.270 55.000 0.00 0.00 44.69 2.17
54 55 0.326264 ACTGCTCGCAAGGGAATTCT 59.674 50.000 5.23 0.00 44.69 2.40
55 56 1.012841 CTGCTCGCAAGGGAATTCTC 58.987 55.000 5.23 0.00 44.69 2.87
56 57 0.740868 TGCTCGCAAGGGAATTCTCG 60.741 55.000 5.23 2.44 44.69 4.04
57 58 0.460284 GCTCGCAAGGGAATTCTCGA 60.460 55.000 5.23 6.33 44.69 4.04
59 60 0.457853 TCGCAAGGGAATTCTCGACG 60.458 55.000 5.23 8.25 38.47 5.12
60 61 1.421410 CGCAAGGGAATTCTCGACGG 61.421 60.000 5.23 0.00 0.00 4.79
61 62 0.391263 GCAAGGGAATTCTCGACGGT 60.391 55.000 5.23 0.00 0.00 4.83
62 63 1.944430 GCAAGGGAATTCTCGACGGTT 60.944 52.381 5.23 0.00 0.00 4.44
63 64 1.732259 CAAGGGAATTCTCGACGGTTG 59.268 52.381 5.23 0.00 0.00 3.77
64 65 0.974383 AGGGAATTCTCGACGGTTGT 59.026 50.000 5.23 0.00 0.00 3.32
65 66 2.173519 AGGGAATTCTCGACGGTTGTA 58.826 47.619 5.23 0.00 0.00 2.41
66 67 2.094338 AGGGAATTCTCGACGGTTGTAC 60.094 50.000 5.23 0.00 0.00 2.90
67 68 2.265683 GGAATTCTCGACGGTTGTACC 58.734 52.381 5.23 0.00 34.05 3.34
69 70 2.649331 ATTCTCGACGGTTGTACCAG 57.351 50.000 0.00 0.00 38.47 4.00
70 71 1.321474 TTCTCGACGGTTGTACCAGT 58.679 50.000 0.00 0.00 38.47 4.00
71 72 2.183478 TCTCGACGGTTGTACCAGTA 57.817 50.000 0.00 0.00 38.47 2.74
72 73 1.806542 TCTCGACGGTTGTACCAGTAC 59.193 52.381 0.86 0.86 38.47 2.73
73 74 1.536766 CTCGACGGTTGTACCAGTACA 59.463 52.381 6.55 6.55 43.61 2.90
75 76 2.095110 TCGACGGTTGTACCAGTACATG 60.095 50.000 11.24 7.44 44.54 3.21
77 78 3.119884 CGACGGTTGTACCAGTACATGTA 60.120 47.826 11.24 0.08 44.54 2.29
78 79 4.168760 GACGGTTGTACCAGTACATGTAC 58.831 47.826 25.51 25.51 44.54 2.90
80 81 5.009631 ACGGTTGTACCAGTACATGTACTA 58.990 41.667 32.58 18.43 43.98 1.82
84 85 5.197224 TGTACCAGTACATGTACTACCCT 57.803 43.478 32.58 19.02 43.98 4.34
85 86 6.325993 TGTACCAGTACATGTACTACCCTA 57.674 41.667 32.58 18.76 43.98 3.53
86 87 6.730447 TGTACCAGTACATGTACTACCCTAA 58.270 40.000 32.58 17.00 43.98 2.69
87 88 6.603201 TGTACCAGTACATGTACTACCCTAAC 59.397 42.308 32.58 23.53 43.98 2.34
88 89 4.958581 ACCAGTACATGTACTACCCTAACC 59.041 45.833 32.58 6.46 43.98 2.85
89 90 4.957954 CCAGTACATGTACTACCCTAACCA 59.042 45.833 32.58 0.00 43.98 3.67
90 91 5.163478 CCAGTACATGTACTACCCTAACCAC 60.163 48.000 32.58 8.19 43.98 4.16
91 92 4.958581 AGTACATGTACTACCCTAACCACC 59.041 45.833 32.28 4.66 43.98 4.61
92 93 2.762327 ACATGTACTACCCTAACCACCG 59.238 50.000 0.00 0.00 0.00 4.94
93 94 1.185315 TGTACTACCCTAACCACCGC 58.815 55.000 0.00 0.00 0.00 5.68
95 96 1.406898 GTACTACCCTAACCACCGCTC 59.593 57.143 0.00 0.00 0.00 5.03
98 99 4.832608 CCCTAACCACCGCTCCGC 62.833 72.222 0.00 0.00 0.00 5.54
99 100 4.077184 CCTAACCACCGCTCCGCA 62.077 66.667 0.00 0.00 0.00 5.69
100 101 2.509336 CTAACCACCGCTCCGCAG 60.509 66.667 0.00 0.00 0.00 5.18
114 115 3.869272 GCAGGTGATTCCGCGCAG 61.869 66.667 8.75 0.00 41.99 5.18
117 118 1.302511 AGGTGATTCCGCGCAGTTT 60.303 52.632 8.75 0.00 41.99 2.66
118 119 0.889186 AGGTGATTCCGCGCAGTTTT 60.889 50.000 8.75 0.00 41.99 2.43
119 120 0.039527 GGTGATTCCGCGCAGTTTTT 60.040 50.000 8.75 0.00 0.00 1.94
121 122 2.505866 GTGATTCCGCGCAGTTTTTAG 58.494 47.619 8.75 0.00 0.00 1.85
122 123 1.466950 TGATTCCGCGCAGTTTTTAGG 59.533 47.619 8.75 0.00 0.00 2.69
124 125 0.589223 TTCCGCGCAGTTTTTAGGTG 59.411 50.000 8.75 0.00 0.00 4.00
125 126 1.442017 CCGCGCAGTTTTTAGGTGC 60.442 57.895 8.75 0.00 34.85 5.01
130 131 2.606717 GCAGTTTTTAGGTGCGGTAC 57.393 50.000 0.00 0.00 0.00 3.34
140 141 3.829044 TGCGGTACCGGACGATGG 61.829 66.667 33.98 5.60 40.19 3.51
142 143 3.524606 CGGTACCGGACGATGGCT 61.525 66.667 27.00 0.00 35.56 4.75
145 146 0.820891 GGTACCGGACGATGGCTAGA 60.821 60.000 9.46 0.00 0.00 2.43
146 147 0.310232 GTACCGGACGATGGCTAGAC 59.690 60.000 9.46 0.00 0.00 2.59
147 148 1.162181 TACCGGACGATGGCTAGACG 61.162 60.000 9.46 0.00 0.00 4.18
148 149 2.331805 CGGACGATGGCTAGACGG 59.668 66.667 0.00 0.00 0.00 4.79
149 150 2.478890 CGGACGATGGCTAGACGGT 61.479 63.158 0.00 0.00 0.00 4.83
150 151 1.814527 GGACGATGGCTAGACGGTT 59.185 57.895 0.00 0.00 0.00 4.44
151 152 0.527817 GGACGATGGCTAGACGGTTG 60.528 60.000 0.00 0.00 0.00 3.77
152 153 0.172803 GACGATGGCTAGACGGTTGT 59.827 55.000 0.00 0.00 0.00 3.32
153 154 0.606604 ACGATGGCTAGACGGTTGTT 59.393 50.000 0.00 0.00 0.00 2.83
154 155 1.278238 CGATGGCTAGACGGTTGTTC 58.722 55.000 0.00 0.00 0.00 3.18
155 156 1.403647 CGATGGCTAGACGGTTGTTCA 60.404 52.381 0.00 0.00 0.00 3.18
156 157 2.271800 GATGGCTAGACGGTTGTTCAG 58.728 52.381 0.00 0.00 0.00 3.02
157 158 1.045407 TGGCTAGACGGTTGTTCAGT 58.955 50.000 0.00 0.00 0.00 3.41
158 159 1.414919 TGGCTAGACGGTTGTTCAGTT 59.585 47.619 0.00 0.00 0.00 3.16
159 160 2.158871 TGGCTAGACGGTTGTTCAGTTT 60.159 45.455 0.00 0.00 0.00 2.66
160 161 3.069872 TGGCTAGACGGTTGTTCAGTTTA 59.930 43.478 0.00 0.00 0.00 2.01
161 162 4.251268 GGCTAGACGGTTGTTCAGTTTAT 58.749 43.478 0.00 0.00 0.00 1.40
162 163 4.329256 GGCTAGACGGTTGTTCAGTTTATC 59.671 45.833 0.00 0.00 0.00 1.75
167 168 7.272037 AGACGGTTGTTCAGTTTATCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
168 169 8.385898 AGACGGTTGTTCAGTTTATCAAATTA 57.614 30.769 0.00 0.00 0.00 1.40
170 171 9.620660 GACGGTTGTTCAGTTTATCAAATTAAT 57.379 29.630 0.00 0.00 0.00 1.40
200 201 4.189188 CGTGAGGCCCGACGGTAG 62.189 72.222 13.94 0.00 31.84 3.18
201 202 3.066814 GTGAGGCCCGACGGTAGT 61.067 66.667 13.94 0.00 0.00 2.73
202 203 1.750399 GTGAGGCCCGACGGTAGTA 60.750 63.158 13.94 0.00 0.00 1.82
205 206 1.722636 GAGGCCCGACGGTAGTACTG 61.723 65.000 13.94 7.62 0.00 2.74
206 207 2.103736 GCCCGACGGTAGTACTGC 59.896 66.667 13.94 3.50 0.00 4.40
208 209 1.726265 CCCGACGGTAGTACTGCTC 59.274 63.158 13.94 5.54 0.00 4.26
209 210 0.747283 CCCGACGGTAGTACTGCTCT 60.747 60.000 13.94 0.00 0.00 4.09
210 211 0.377554 CCGACGGTAGTACTGCTCTG 59.622 60.000 10.95 6.41 0.00 3.35
211 212 0.377554 CGACGGTAGTACTGCTCTGG 59.622 60.000 10.95 1.38 0.00 3.86
213 214 1.401199 GACGGTAGTACTGCTCTGGTC 59.599 57.143 10.95 9.35 0.00 4.02
215 216 1.682394 CGGTAGTACTGCTCTGGTCCT 60.682 57.143 10.95 0.00 0.00 3.85
218 219 2.901338 AGTACTGCTCTGGTCCTACA 57.099 50.000 0.00 0.00 0.00 2.74
219 220 2.729194 AGTACTGCTCTGGTCCTACAG 58.271 52.381 0.00 0.00 39.84 2.74
221 222 1.551452 ACTGCTCTGGTCCTACAGAC 58.449 55.000 7.67 0.00 42.26 3.51
231 232 2.413837 GTCCTACAGACGTGCATTTGT 58.586 47.619 0.00 0.00 35.30 2.83
232 233 2.157668 GTCCTACAGACGTGCATTTGTG 59.842 50.000 0.00 0.00 35.30 3.33
233 234 1.135972 CCTACAGACGTGCATTTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
234 235 0.871722 TACAGACGTGCATTTGTGCC 59.128 50.000 0.00 0.00 0.00 5.01
235 236 0.819259 ACAGACGTGCATTTGTGCCT 60.819 50.000 0.00 0.00 0.00 4.75
236 237 1.155889 CAGACGTGCATTTGTGCCTA 58.844 50.000 0.00 0.00 0.00 3.93
237 238 1.129251 CAGACGTGCATTTGTGCCTAG 59.871 52.381 0.00 0.00 0.00 3.02
238 239 0.447801 GACGTGCATTTGTGCCTAGG 59.552 55.000 3.67 3.67 0.00 3.02
239 240 0.960364 ACGTGCATTTGTGCCTAGGG 60.960 55.000 11.72 0.00 0.00 3.53
240 241 0.960364 CGTGCATTTGTGCCTAGGGT 60.960 55.000 11.72 0.00 0.00 4.34
242 243 2.017049 GTGCATTTGTGCCTAGGGTAG 58.983 52.381 11.72 0.00 0.00 3.18
244 245 2.041081 TGCATTTGTGCCTAGGGTAGTT 59.959 45.455 11.72 0.00 0.00 2.24
245 246 2.423538 GCATTTGTGCCTAGGGTAGTTG 59.576 50.000 11.72 0.00 0.00 3.16
246 247 2.194201 TTTGTGCCTAGGGTAGTTGC 57.806 50.000 11.72 0.00 0.00 4.17
247 248 0.036765 TTGTGCCTAGGGTAGTTGCG 60.037 55.000 11.72 0.00 0.00 4.85
249 250 1.611261 TGCCTAGGGTAGTTGCGGT 60.611 57.895 11.72 0.00 0.00 5.68
250 251 1.196104 TGCCTAGGGTAGTTGCGGTT 61.196 55.000 11.72 0.00 0.00 4.44
251 252 0.743345 GCCTAGGGTAGTTGCGGTTG 60.743 60.000 11.72 0.00 0.00 3.77
252 253 0.611714 CCTAGGGTAGTTGCGGTTGT 59.388 55.000 0.00 0.00 0.00 3.32
254 255 2.417787 CCTAGGGTAGTTGCGGTTGTAC 60.418 54.545 0.00 0.00 0.00 2.90
255 256 1.345063 AGGGTAGTTGCGGTTGTACT 58.655 50.000 0.00 0.00 0.00 2.73
256 257 1.001633 AGGGTAGTTGCGGTTGTACTG 59.998 52.381 0.00 0.00 0.00 2.74
267 268 3.500982 CGGTTGTACTGCATTGGATTTG 58.499 45.455 0.00 0.00 0.00 2.32
268 269 3.253230 GGTTGTACTGCATTGGATTTGC 58.747 45.455 0.00 0.00 40.55 3.68
275 276 3.472283 TGCATTGGATTTGCAGTTTGT 57.528 38.095 0.00 0.00 44.73 2.83
356 357 9.573133 AACACAATACTAATAGCTGCATTTTTC 57.427 29.630 1.02 0.00 0.00 2.29
357 358 8.960591 ACACAATACTAATAGCTGCATTTTTCT 58.039 29.630 1.02 0.00 0.00 2.52
358 359 9.443283 CACAATACTAATAGCTGCATTTTTCTC 57.557 33.333 1.02 0.00 0.00 2.87
363 364 8.748380 ACTAATAGCTGCATTTTTCTCAAAAC 57.252 30.769 1.02 0.00 34.63 2.43
364 365 8.579863 ACTAATAGCTGCATTTTTCTCAAAACT 58.420 29.630 1.02 0.00 34.63 2.66
365 366 7.647907 AATAGCTGCATTTTTCTCAAAACTG 57.352 32.000 1.02 0.00 34.63 3.16
366 367 5.266733 AGCTGCATTTTTCTCAAAACTGA 57.733 34.783 1.02 0.00 34.63 3.41
367 368 5.287226 AGCTGCATTTTTCTCAAAACTGAG 58.713 37.500 1.02 0.00 34.63 3.35
369 370 5.924825 GCTGCATTTTTCTCAAAACTGAGAT 59.075 36.000 5.71 0.00 43.56 2.75
370 371 6.128902 GCTGCATTTTTCTCAAAACTGAGATG 60.129 38.462 5.71 3.07 43.56 2.90
371 372 5.693104 TGCATTTTTCTCAAAACTGAGATGC 59.307 36.000 16.20 16.20 43.56 3.91
372 373 5.693104 GCATTTTTCTCAAAACTGAGATGCA 59.307 36.000 17.38 0.00 42.32 3.96
373 374 6.201425 GCATTTTTCTCAAAACTGAGATGCAA 59.799 34.615 17.38 7.93 42.32 4.08
374 375 7.568861 GCATTTTTCTCAAAACTGAGATGCAAG 60.569 37.037 17.38 6.74 42.32 4.01
378 379 6.889301 TCTCAAAACTGAGATGCAAGAAAT 57.111 33.333 0.68 0.00 39.74 2.17
379 380 7.281040 TCTCAAAACTGAGATGCAAGAAATT 57.719 32.000 0.68 0.00 39.74 1.82
381 382 7.650504 TCTCAAAACTGAGATGCAAGAAATTTG 59.349 33.333 0.00 0.00 39.74 2.32
382 383 6.201425 TCAAAACTGAGATGCAAGAAATTTGC 59.799 34.615 0.00 5.00 45.11 3.68
396 397 7.541162 CAAGAAATTTGCAACTAGGATGATGA 58.459 34.615 0.00 0.00 0.00 2.92
397 398 7.707624 AGAAATTTGCAACTAGGATGATGAA 57.292 32.000 0.00 0.00 0.00 2.57
398 399 8.125978 AGAAATTTGCAACTAGGATGATGAAA 57.874 30.769 0.00 0.00 0.00 2.69
399 400 8.587608 AGAAATTTGCAACTAGGATGATGAAAA 58.412 29.630 0.00 0.00 0.00 2.29
400 401 9.206870 GAAATTTGCAACTAGGATGATGAAAAA 57.793 29.630 0.00 0.00 0.00 1.94
431 432 8.696374 ACTAAAAAGGAGAAGAAAGAAAAAGGG 58.304 33.333 0.00 0.00 0.00 3.95
432 433 7.733773 AAAAAGGAGAAGAAAGAAAAAGGGA 57.266 32.000 0.00 0.00 0.00 4.20
433 434 6.716934 AAAGGAGAAGAAAGAAAAAGGGAC 57.283 37.500 0.00 0.00 0.00 4.46
434 435 5.388599 AGGAGAAGAAAGAAAAAGGGACA 57.611 39.130 0.00 0.00 0.00 4.02
436 437 6.194967 AGGAGAAGAAAGAAAAAGGGACAAA 58.805 36.000 0.00 0.00 0.00 2.83
438 439 6.127451 GGAGAAGAAAGAAAAAGGGACAAACA 60.127 38.462 0.00 0.00 0.00 2.83
439 440 6.631016 AGAAGAAAGAAAAAGGGACAAACAC 58.369 36.000 0.00 0.00 0.00 3.32
441 442 6.353404 AGAAAGAAAAAGGGACAAACACAA 57.647 33.333 0.00 0.00 0.00 3.33
443 444 7.220740 AGAAAGAAAAAGGGACAAACACAAAA 58.779 30.769 0.00 0.00 0.00 2.44
445 446 9.157104 GAAAGAAAAAGGGACAAACACAAAATA 57.843 29.630 0.00 0.00 0.00 1.40
446 447 8.716646 AAGAAAAAGGGACAAACACAAAATAG 57.283 30.769 0.00 0.00 0.00 1.73
447 448 7.847096 AGAAAAAGGGACAAACACAAAATAGT 58.153 30.769 0.00 0.00 0.00 2.12
448 449 8.973182 AGAAAAAGGGACAAACACAAAATAGTA 58.027 29.630 0.00 0.00 0.00 1.82
449 450 9.589111 GAAAAAGGGACAAACACAAAATAGTAA 57.411 29.630 0.00 0.00 0.00 2.24
543 544 8.525290 AAAAGAAGAGAAATGAGAACAAAGGA 57.475 30.769 0.00 0.00 0.00 3.36
544 545 8.525290 AAAGAAGAGAAATGAGAACAAAGGAA 57.475 30.769 0.00 0.00 0.00 3.36
545 546 8.525290 AAGAAGAGAAATGAGAACAAAGGAAA 57.475 30.769 0.00 0.00 0.00 3.13
547 548 8.628280 AGAAGAGAAATGAGAACAAAGGAAAAG 58.372 33.333 0.00 0.00 0.00 2.27
548 549 8.525290 AAGAGAAATGAGAACAAAGGAAAAGA 57.475 30.769 0.00 0.00 0.00 2.52
549 550 7.935520 AGAGAAATGAGAACAAAGGAAAAGAC 58.064 34.615 0.00 0.00 0.00 3.01
551 552 8.066612 AGAAATGAGAACAAAGGAAAAGACAA 57.933 30.769 0.00 0.00 0.00 3.18
552 553 8.531146 AGAAATGAGAACAAAGGAAAAGACAAA 58.469 29.630 0.00 0.00 0.00 2.83
553 554 8.707938 AAATGAGAACAAAGGAAAAGACAAAG 57.292 30.769 0.00 0.00 0.00 2.77
554 555 7.645058 ATGAGAACAAAGGAAAAGACAAAGA 57.355 32.000 0.00 0.00 0.00 2.52
555 556 7.461182 TGAGAACAAAGGAAAAGACAAAGAA 57.539 32.000 0.00 0.00 0.00 2.52
558 559 7.666623 AGAACAAAGGAAAAGACAAAGAACAA 58.333 30.769 0.00 0.00 0.00 2.83
559 560 7.814587 AGAACAAAGGAAAAGACAAAGAACAAG 59.185 33.333 0.00 0.00 0.00 3.16
560 561 7.227049 ACAAAGGAAAAGACAAAGAACAAGA 57.773 32.000 0.00 0.00 0.00 3.02
561 562 7.090808 ACAAAGGAAAAGACAAAGAACAAGAC 58.909 34.615 0.00 0.00 0.00 3.01
562 563 6.834168 AAGGAAAAGACAAAGAACAAGACA 57.166 33.333 0.00 0.00 0.00 3.41
563 564 6.442513 AGGAAAAGACAAAGAACAAGACAG 57.557 37.500 0.00 0.00 0.00 3.51
564 565 5.037385 GGAAAAGACAAAGAACAAGACAGC 58.963 41.667 0.00 0.00 0.00 4.40
565 566 5.393027 GGAAAAGACAAAGAACAAGACAGCA 60.393 40.000 0.00 0.00 0.00 4.41
566 567 5.643379 AAAGACAAAGAACAAGACAGCAA 57.357 34.783 0.00 0.00 0.00 3.91
567 568 4.622701 AGACAAAGAACAAGACAGCAAC 57.377 40.909 0.00 0.00 0.00 4.17
569 570 4.458989 AGACAAAGAACAAGACAGCAACAA 59.541 37.500 0.00 0.00 0.00 2.83
570 571 4.485163 ACAAAGAACAAGACAGCAACAAC 58.515 39.130 0.00 0.00 0.00 3.32
571 572 3.782889 AAGAACAAGACAGCAACAACC 57.217 42.857 0.00 0.00 0.00 3.77
574 575 1.846007 ACAAGACAGCAACAACCCAA 58.154 45.000 0.00 0.00 0.00 4.12
575 576 2.175202 ACAAGACAGCAACAACCCAAA 58.825 42.857 0.00 0.00 0.00 3.28
578 579 3.525268 AGACAGCAACAACCCAAAAAG 57.475 42.857 0.00 0.00 0.00 2.27
579 580 3.096092 AGACAGCAACAACCCAAAAAGA 58.904 40.909 0.00 0.00 0.00 2.52
580 581 3.119137 AGACAGCAACAACCCAAAAAGAC 60.119 43.478 0.00 0.00 0.00 3.01
581 582 2.564947 ACAGCAACAACCCAAAAAGACA 59.435 40.909 0.00 0.00 0.00 3.41
582 583 3.189285 CAGCAACAACCCAAAAAGACAG 58.811 45.455 0.00 0.00 0.00 3.51
583 584 2.168313 AGCAACAACCCAAAAAGACAGG 59.832 45.455 0.00 0.00 0.00 4.00
585 586 3.368948 GCAACAACCCAAAAAGACAGGAA 60.369 43.478 0.00 0.00 0.00 3.36
586 587 4.826556 CAACAACCCAAAAAGACAGGAAA 58.173 39.130 0.00 0.00 0.00 3.13
588 589 3.835395 ACAACCCAAAAAGACAGGAAACA 59.165 39.130 0.00 0.00 0.00 2.83
590 591 5.221742 ACAACCCAAAAAGACAGGAAACAAA 60.222 36.000 0.00 0.00 0.00 2.83
593 594 5.879777 ACCCAAAAAGACAGGAAACAAAATG 59.120 36.000 0.00 0.00 0.00 2.32
594 595 6.112058 CCCAAAAAGACAGGAAACAAAATGA 58.888 36.000 0.00 0.00 0.00 2.57
595 596 6.597280 CCCAAAAAGACAGGAAACAAAATGAA 59.403 34.615 0.00 0.00 0.00 2.57
596 597 7.120432 CCCAAAAAGACAGGAAACAAAATGAAA 59.880 33.333 0.00 0.00 0.00 2.69
597 598 8.510505 CCAAAAAGACAGGAAACAAAATGAAAA 58.489 29.630 0.00 0.00 0.00 2.29
598 599 9.890352 CAAAAAGACAGGAAACAAAATGAAAAA 57.110 25.926 0.00 0.00 0.00 1.94
600 601 7.848223 AAGACAGGAAACAAAATGAAAAAGG 57.152 32.000 0.00 0.00 0.00 3.11
601 602 5.817296 AGACAGGAAACAAAATGAAAAAGGC 59.183 36.000 0.00 0.00 0.00 4.35
603 604 4.275689 CAGGAAACAAAATGAAAAAGGCCC 59.724 41.667 0.00 0.00 0.00 5.80
604 605 4.080072 AGGAAACAAAATGAAAAAGGCCCA 60.080 37.500 0.00 0.00 0.00 5.36
605 606 4.642437 GGAAACAAAATGAAAAAGGCCCAA 59.358 37.500 0.00 0.00 0.00 4.12
608 609 4.198530 ACAAAATGAAAAAGGCCCAACTG 58.801 39.130 0.00 0.00 0.00 3.16
609 610 4.080638 ACAAAATGAAAAAGGCCCAACTGA 60.081 37.500 0.00 0.00 0.00 3.41
610 611 4.341366 AAATGAAAAAGGCCCAACTGAG 57.659 40.909 0.00 0.00 0.00 3.35
611 612 2.746279 TGAAAAAGGCCCAACTGAGA 57.254 45.000 0.00 0.00 0.00 3.27
612 613 2.306847 TGAAAAAGGCCCAACTGAGAC 58.693 47.619 0.00 0.00 0.00 3.36
613 614 2.306847 GAAAAAGGCCCAACTGAGACA 58.693 47.619 0.00 0.00 0.00 3.41
614 615 2.683211 AAAAGGCCCAACTGAGACAT 57.317 45.000 0.00 0.00 0.00 3.06
615 616 1.915141 AAAGGCCCAACTGAGACATG 58.085 50.000 0.00 0.00 0.00 3.21
617 618 0.773644 AGGCCCAACTGAGACATGTT 59.226 50.000 0.00 0.00 0.00 2.71
618 619 1.168714 GGCCCAACTGAGACATGTTC 58.831 55.000 0.00 0.31 0.00 3.18
619 620 1.271597 GGCCCAACTGAGACATGTTCT 60.272 52.381 0.00 0.00 37.23 3.01
620 621 2.027192 GGCCCAACTGAGACATGTTCTA 60.027 50.000 0.00 0.00 33.22 2.10
623 624 4.702131 GCCCAACTGAGACATGTTCTAAAT 59.298 41.667 0.00 0.00 33.22 1.40
625 626 6.294731 GCCCAACTGAGACATGTTCTAAATTT 60.295 38.462 0.00 0.00 33.22 1.82
627 628 8.792633 CCCAACTGAGACATGTTCTAAATTTTA 58.207 33.333 0.00 0.00 33.22 1.52
628 629 9.831737 CCAACTGAGACATGTTCTAAATTTTAG 57.168 33.333 9.48 9.48 33.22 1.85
629 630 9.334693 CAACTGAGACATGTTCTAAATTTTAGC 57.665 33.333 10.71 0.26 33.22 3.09
630 631 8.621532 ACTGAGACATGTTCTAAATTTTAGCA 57.378 30.769 10.71 5.40 33.22 3.49
631 632 9.066892 ACTGAGACATGTTCTAAATTTTAGCAA 57.933 29.630 10.71 4.70 33.22 3.91
632 633 9.897744 CTGAGACATGTTCTAAATTTTAGCAAA 57.102 29.630 10.71 0.00 33.22 3.68
689 690 8.829514 TCAACAACTACAATTAAAAGTGAACG 57.170 30.769 0.00 0.00 0.00 3.95
690 691 7.911205 TCAACAACTACAATTAAAAGTGAACGG 59.089 33.333 0.00 0.00 0.00 4.44
691 692 7.556733 ACAACTACAATTAAAAGTGAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
692 693 8.161699 ACAACTACAATTAAAAGTGAACGGAT 57.838 30.769 0.00 0.00 0.00 4.18
694 695 7.972832 ACTACAATTAAAAGTGAACGGATGA 57.027 32.000 0.00 0.00 0.00 2.92
695 696 8.385898 ACTACAATTAAAAGTGAACGGATGAA 57.614 30.769 0.00 0.00 0.00 2.57
697 698 7.924103 ACAATTAAAAGTGAACGGATGAAAC 57.076 32.000 0.00 0.00 0.00 2.78
698 699 7.484975 ACAATTAAAAGTGAACGGATGAAACA 58.515 30.769 0.00 0.00 0.00 2.83
699 700 7.976734 ACAATTAAAAGTGAACGGATGAAACAA 59.023 29.630 0.00 0.00 0.00 2.83
701 702 8.934507 ATTAAAAGTGAACGGATGAAACAAAA 57.065 26.923 0.00 0.00 0.00 2.44
702 703 8.758633 TTAAAAGTGAACGGATGAAACAAAAA 57.241 26.923 0.00 0.00 0.00 1.94
749 750 2.452600 AAAAACCTCACAAGCCCTCA 57.547 45.000 0.00 0.00 0.00 3.86
750 751 1.986882 AAAACCTCACAAGCCCTCAG 58.013 50.000 0.00 0.00 0.00 3.35
751 752 0.846693 AAACCTCACAAGCCCTCAGT 59.153 50.000 0.00 0.00 0.00 3.41
752 753 0.398318 AACCTCACAAGCCCTCAGTC 59.602 55.000 0.00 0.00 0.00 3.51
754 755 1.536073 CCTCACAAGCCCTCAGTCGA 61.536 60.000 0.00 0.00 0.00 4.20
755 756 0.389166 CTCACAAGCCCTCAGTCGAC 60.389 60.000 7.70 7.70 0.00 4.20
756 757 0.827925 TCACAAGCCCTCAGTCGACT 60.828 55.000 13.58 13.58 0.00 4.18
757 758 0.668706 CACAAGCCCTCAGTCGACTG 60.669 60.000 34.76 34.76 45.08 3.51
771 772 6.893958 CAGTCGACTGAGTTATAGCAAAAT 57.106 37.500 36.73 0.00 46.59 1.82
774 775 5.742453 GTCGACTGAGTTATAGCAAAATCGA 59.258 40.000 8.70 0.00 32.91 3.59
775 776 6.418226 GTCGACTGAGTTATAGCAAAATCGAT 59.582 38.462 8.70 0.00 37.23 3.59
776 777 6.978659 TCGACTGAGTTATAGCAAAATCGATT 59.021 34.615 4.39 4.39 30.58 3.34
778 779 8.916654 CGACTGAGTTATAGCAAAATCGATTAT 58.083 33.333 11.83 3.31 0.00 1.28
802 803 6.518208 TTATTTATTTTTGACACGGAGGGG 57.482 37.500 0.00 0.00 0.00 4.79
846 852 2.041350 ACGATCCTGTCCGTATATCCCT 59.959 50.000 0.00 0.00 37.23 4.20
853 859 3.233507 TGTCCGTATATCCCTGTAACCC 58.766 50.000 0.00 0.00 0.00 4.11
856 862 2.565834 CCGTATATCCCTGTAACCCCTG 59.434 54.545 0.00 0.00 0.00 4.45
857 863 2.028385 CGTATATCCCTGTAACCCCTGC 60.028 54.545 0.00 0.00 0.00 4.85
860 866 2.508216 ATCCCTGTAACCCCTGCCCT 62.508 60.000 0.00 0.00 0.00 5.19
1116 1134 1.737793 CCGCAGCTTTAATTTCGTCCT 59.262 47.619 0.00 0.00 0.00 3.85
1118 1136 2.534939 CGCAGCTTTAATTTCGTCCTCG 60.535 50.000 0.00 0.00 38.55 4.63
1285 1303 3.117512 AGGGATGGGTGGATTGTGATTAC 60.118 47.826 0.00 0.00 0.00 1.89
1500 1519 7.490079 TGCATTACTGTTAGTACCGAAGTTATG 59.510 37.037 8.85 8.85 28.93 1.90
1632 1651 7.743116 TGGTTATTCCCTAAAGTCATAGTCA 57.257 36.000 0.00 0.00 34.77 3.41
1664 1683 7.251936 TGGAATCAGGAGAATATGTAGGAGAT 58.748 38.462 0.00 0.00 0.00 2.75
1975 2037 3.771216 ACAATTGTCTTGGCCAATCTCT 58.229 40.909 20.85 0.00 31.49 3.10
1977 2039 4.021719 ACAATTGTCTTGGCCAATCTCTTG 60.022 41.667 20.85 19.41 31.49 3.02
2037 2099 5.004345 GCTGTGTTGTTGTGACATTGTTTAC 59.996 40.000 0.00 0.00 35.29 2.01
2175 2237 6.959639 ATGGTTTTGTTAGATGTGTTCAGT 57.040 33.333 0.00 0.00 0.00 3.41
2176 2238 6.767524 TGGTTTTGTTAGATGTGTTCAGTT 57.232 33.333 0.00 0.00 0.00 3.16
2180 2242 7.544217 GGTTTTGTTAGATGTGTTCAGTTTTGT 59.456 33.333 0.00 0.00 0.00 2.83
2202 2264 3.129638 TGCAGTTTACAAACACCACCTTC 59.870 43.478 7.53 0.00 41.30 3.46
2262 2324 6.184789 AGAGTGGAAAAGGTTGTTTGACTTA 58.815 36.000 0.00 0.00 0.00 2.24
2277 2339 6.814146 TGTTTGACTTACATTTGTGTTTTCCC 59.186 34.615 0.00 0.00 0.00 3.97
2950 3012 1.032014 AATGCAAAACTGTCGCCTGT 58.968 45.000 0.00 0.00 0.00 4.00
3042 3111 0.460811 CTGAGCGCTCCAATGCACTA 60.461 55.000 33.23 11.39 0.00 2.74
3109 3178 1.205893 CTCGAGAAGGGCTGTAGCTTT 59.794 52.381 6.58 0.00 41.70 3.51
3239 3308 3.006940 GCCGAATTGGTCAATACTGTCA 58.993 45.455 0.00 0.00 41.21 3.58
3370 3453 2.289565 GCCACATAGGTAGCAGAAACC 58.710 52.381 0.00 0.00 40.61 3.27
3394 3477 4.844420 CCAGATGAAGGCTCGGAC 57.156 61.111 0.00 0.00 0.00 4.79
3423 3506 6.364435 GCAAGATTCTGTGTTTTGAAATCCTC 59.636 38.462 0.00 0.00 0.00 3.71
3424 3507 6.246420 AGATTCTGTGTTTTGAAATCCTCG 57.754 37.500 0.00 0.00 0.00 4.63
3434 3537 1.902508 TGAAATCCTCGGAGCAACTCT 59.097 47.619 0.00 0.00 0.00 3.24
3451 3916 0.244450 TCTAACGCGTCGACCCAAAT 59.756 50.000 14.44 0.00 0.00 2.32
3462 3927 1.908066 GACCCAAATGGACGCGTGTC 61.908 60.000 20.70 20.76 44.72 3.67
3464 3929 0.390603 CCCAAATGGACGCGTGTCTA 60.391 55.000 26.79 22.55 44.83 2.59
3526 3991 0.753479 TGTGTTTGGGTCGGCAATGT 60.753 50.000 0.00 0.00 0.00 2.71
3559 4061 3.552384 TCCTCACGGCCGGTTTGT 61.552 61.111 31.76 4.28 0.00 2.83
3588 4091 7.201350 CCATTTTTAGCTCTTTTTGCGACATAC 60.201 37.037 0.00 0.00 35.28 2.39
3620 4123 2.752354 TGGCCCAAGTTCACATAATTCG 59.248 45.455 0.00 0.00 0.00 3.34
3775 4283 1.824230 GCCCACATGCTCAACCAAATA 59.176 47.619 0.00 0.00 0.00 1.40
3784 4292 5.465532 TGCTCAACCAAATAATCTTGCAA 57.534 34.783 0.00 0.00 0.00 4.08
3888 4396 3.629855 CACAACACAACATTGTCACCCTA 59.370 43.478 0.00 0.00 39.91 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.610911 GTCACAGTGGGGAGGAATTTAG 58.389 50.000 0.00 0.00 0.00 1.85
5 6 0.698818 GGTCACAGTGGGGAGGAATT 59.301 55.000 0.00 0.00 0.00 2.17
6 7 0.475632 TGGTCACAGTGGGGAGGAAT 60.476 55.000 0.00 0.00 0.00 3.01
7 8 1.074090 TGGTCACAGTGGGGAGGAA 60.074 57.895 0.00 0.00 0.00 3.36
8 9 1.536418 CTGGTCACAGTGGGGAGGA 60.536 63.158 0.00 0.00 39.92 3.71
9 10 3.072476 CTGGTCACAGTGGGGAGG 58.928 66.667 0.00 0.00 39.92 4.30
10 11 2.348998 GCTGGTCACAGTGGGGAG 59.651 66.667 0.00 0.00 46.62 4.30
12 13 1.488705 TAAGGCTGGTCACAGTGGGG 61.489 60.000 0.00 0.00 46.62 4.96
13 14 0.036010 CTAAGGCTGGTCACAGTGGG 60.036 60.000 0.00 0.00 46.62 4.61
14 15 0.976641 TCTAAGGCTGGTCACAGTGG 59.023 55.000 0.00 0.00 46.62 4.00
15 16 1.895798 TCTCTAAGGCTGGTCACAGTG 59.104 52.381 0.00 0.00 46.62 3.66
16 17 1.896465 GTCTCTAAGGCTGGTCACAGT 59.104 52.381 0.00 0.00 46.62 3.55
17 18 2.094286 CAGTCTCTAAGGCTGGTCACAG 60.094 54.545 0.56 0.00 43.91 3.66
18 19 1.895798 CAGTCTCTAAGGCTGGTCACA 59.104 52.381 0.56 0.00 43.91 3.58
19 20 2.663826 CAGTCTCTAAGGCTGGTCAC 57.336 55.000 0.56 0.00 43.91 3.67
25 26 0.967887 TGCGAGCAGTCTCTAAGGCT 60.968 55.000 0.00 0.00 39.75 4.58
29 30 0.532573 CCCTTGCGAGCAGTCTCTAA 59.467 55.000 0.00 0.00 37.19 2.10
30 31 0.323451 TCCCTTGCGAGCAGTCTCTA 60.323 55.000 0.00 0.00 37.19 2.43
31 32 1.188219 TTCCCTTGCGAGCAGTCTCT 61.188 55.000 0.00 0.00 37.19 3.10
32 33 0.107945 ATTCCCTTGCGAGCAGTCTC 60.108 55.000 0.00 0.00 35.99 3.36
33 34 0.326264 AATTCCCTTGCGAGCAGTCT 59.674 50.000 0.00 0.00 0.00 3.24
34 35 0.729690 GAATTCCCTTGCGAGCAGTC 59.270 55.000 0.00 0.00 0.00 3.51
35 36 0.326264 AGAATTCCCTTGCGAGCAGT 59.674 50.000 0.65 0.00 0.00 4.40
36 37 1.012841 GAGAATTCCCTTGCGAGCAG 58.987 55.000 0.65 0.00 0.00 4.24
39 40 1.281899 GTCGAGAATTCCCTTGCGAG 58.718 55.000 0.65 0.00 0.00 5.03
41 42 1.421410 CCGTCGAGAATTCCCTTGCG 61.421 60.000 0.65 1.30 0.00 4.85
43 44 1.732259 CAACCGTCGAGAATTCCCTTG 59.268 52.381 0.65 0.00 0.00 3.61
44 45 1.346722 ACAACCGTCGAGAATTCCCTT 59.653 47.619 0.65 0.00 0.00 3.95
45 46 0.974383 ACAACCGTCGAGAATTCCCT 59.026 50.000 0.65 0.00 0.00 4.20
46 47 2.265683 GTACAACCGTCGAGAATTCCC 58.734 52.381 0.65 0.00 0.00 3.97
49 50 2.298163 ACTGGTACAACCGTCGAGAATT 59.702 45.455 0.00 0.00 42.58 2.17
51 52 1.321474 ACTGGTACAACCGTCGAGAA 58.679 50.000 0.00 0.00 42.58 2.87
53 54 1.536766 TGTACTGGTACAACCGTCGAG 59.463 52.381 10.66 0.00 42.58 4.04
54 55 1.603456 TGTACTGGTACAACCGTCGA 58.397 50.000 10.66 0.00 42.58 4.20
63 64 6.039829 GGTTAGGGTAGTACATGTACTGGTAC 59.960 46.154 37.47 29.19 45.25 3.34
64 65 6.129179 GGTTAGGGTAGTACATGTACTGGTA 58.871 44.000 37.47 21.94 45.25 3.25
65 66 4.958581 GGTTAGGGTAGTACATGTACTGGT 59.041 45.833 37.47 24.24 45.25 4.00
66 67 4.957954 TGGTTAGGGTAGTACATGTACTGG 59.042 45.833 37.47 0.00 45.25 4.00
67 68 5.163478 GGTGGTTAGGGTAGTACATGTACTG 60.163 48.000 37.47 0.00 45.25 2.74
69 70 4.202050 CGGTGGTTAGGGTAGTACATGTAC 60.202 50.000 25.51 25.51 36.35 2.90
70 71 3.953612 CGGTGGTTAGGGTAGTACATGTA 59.046 47.826 0.08 0.08 0.00 2.29
71 72 2.762327 CGGTGGTTAGGGTAGTACATGT 59.238 50.000 2.69 2.69 0.00 3.21
72 73 2.482490 GCGGTGGTTAGGGTAGTACATG 60.482 54.545 2.06 0.00 0.00 3.21
73 74 1.758862 GCGGTGGTTAGGGTAGTACAT 59.241 52.381 2.06 0.00 0.00 2.29
75 76 1.406898 GAGCGGTGGTTAGGGTAGTAC 59.593 57.143 0.00 0.00 0.00 2.73
77 78 0.974525 GGAGCGGTGGTTAGGGTAGT 60.975 60.000 0.00 0.00 0.00 2.73
78 79 1.821258 GGAGCGGTGGTTAGGGTAG 59.179 63.158 0.00 0.00 0.00 3.18
80 81 3.387947 CGGAGCGGTGGTTAGGGT 61.388 66.667 0.00 0.00 0.00 4.34
93 94 2.892425 GCGGAATCACCTGCGGAG 60.892 66.667 0.00 0.00 36.31 4.63
98 99 1.577328 AAACTGCGCGGAATCACCTG 61.577 55.000 25.98 0.00 36.31 4.00
99 100 0.889186 AAAACTGCGCGGAATCACCT 60.889 50.000 25.98 0.00 36.31 4.00
100 101 0.039527 AAAAACTGCGCGGAATCACC 60.040 50.000 25.98 0.00 0.00 4.02
101 102 2.505866 CTAAAAACTGCGCGGAATCAC 58.494 47.619 25.98 0.00 0.00 3.06
103 104 1.467342 ACCTAAAAACTGCGCGGAATC 59.533 47.619 25.98 0.00 0.00 2.52
104 105 1.199097 CACCTAAAAACTGCGCGGAAT 59.801 47.619 25.98 8.50 0.00 3.01
107 108 1.442017 GCACCTAAAAACTGCGCGG 60.442 57.895 16.39 16.39 0.00 6.46
108 109 1.792057 CGCACCTAAAAACTGCGCG 60.792 57.895 0.00 0.00 46.34 6.86
111 112 1.198408 GGTACCGCACCTAAAAACTGC 59.802 52.381 0.00 0.00 44.79 4.40
112 113 1.461897 CGGTACCGCACCTAAAAACTG 59.538 52.381 23.44 0.00 46.19 3.16
113 114 1.608801 CCGGTACCGCACCTAAAAACT 60.609 52.381 29.15 0.00 46.19 2.66
114 115 0.798159 CCGGTACCGCACCTAAAAAC 59.202 55.000 29.15 0.00 46.19 2.43
117 118 1.591183 GTCCGGTACCGCACCTAAA 59.409 57.895 29.15 4.45 46.19 1.85
118 119 2.699768 CGTCCGGTACCGCACCTAA 61.700 63.158 29.15 6.23 46.19 2.69
119 120 2.891941 ATCGTCCGGTACCGCACCTA 62.892 60.000 29.15 14.46 46.19 3.08
121 122 3.830192 ATCGTCCGGTACCGCACC 61.830 66.667 29.15 16.24 44.75 5.01
122 123 2.581409 CATCGTCCGGTACCGCAC 60.581 66.667 29.15 24.00 38.24 5.34
125 126 2.126417 CTAGCCATCGTCCGGTACCG 62.126 65.000 27.68 27.68 39.44 4.02
126 127 0.820891 TCTAGCCATCGTCCGGTACC 60.821 60.000 0.16 0.16 0.00 3.34
127 128 0.310232 GTCTAGCCATCGTCCGGTAC 59.690 60.000 0.00 0.00 0.00 3.34
128 129 1.162181 CGTCTAGCCATCGTCCGGTA 61.162 60.000 0.00 0.00 0.00 4.02
129 130 2.478890 CGTCTAGCCATCGTCCGGT 61.479 63.158 0.00 0.00 0.00 5.28
130 131 2.331805 CGTCTAGCCATCGTCCGG 59.668 66.667 0.00 0.00 0.00 5.14
131 132 2.001361 AACCGTCTAGCCATCGTCCG 62.001 60.000 0.00 0.00 0.00 4.79
132 133 0.527817 CAACCGTCTAGCCATCGTCC 60.528 60.000 0.00 0.00 0.00 4.79
133 134 0.172803 ACAACCGTCTAGCCATCGTC 59.827 55.000 0.00 0.00 0.00 4.20
134 135 0.606604 AACAACCGTCTAGCCATCGT 59.393 50.000 0.00 0.00 0.00 3.73
135 136 1.278238 GAACAACCGTCTAGCCATCG 58.722 55.000 0.00 0.00 0.00 3.84
136 137 2.271800 CTGAACAACCGTCTAGCCATC 58.728 52.381 0.00 0.00 0.00 3.51
137 138 1.623811 ACTGAACAACCGTCTAGCCAT 59.376 47.619 0.00 0.00 0.00 4.40
138 139 1.045407 ACTGAACAACCGTCTAGCCA 58.955 50.000 0.00 0.00 0.00 4.75
139 140 2.165319 AACTGAACAACCGTCTAGCC 57.835 50.000 0.00 0.00 0.00 3.93
140 141 4.927425 TGATAAACTGAACAACCGTCTAGC 59.073 41.667 0.00 0.00 0.00 3.42
142 143 7.972832 ATTTGATAAACTGAACAACCGTCTA 57.027 32.000 0.00 0.00 0.00 2.59
161 162 9.926158 TCACGGTTGTACTAGTTATTAATTTGA 57.074 29.630 0.00 0.00 0.00 2.69
167 168 5.163519 GGCCTCACGGTTGTACTAGTTATTA 60.164 44.000 0.00 0.00 0.00 0.98
168 169 4.382362 GGCCTCACGGTTGTACTAGTTATT 60.382 45.833 0.00 0.00 0.00 1.40
170 171 2.493278 GGCCTCACGGTTGTACTAGTTA 59.507 50.000 0.00 0.00 0.00 2.24
173 174 0.175073 GGGCCTCACGGTTGTACTAG 59.825 60.000 0.84 0.00 0.00 2.57
174 175 1.597797 CGGGCCTCACGGTTGTACTA 61.598 60.000 0.84 0.00 0.00 1.82
175 176 2.939261 CGGGCCTCACGGTTGTACT 61.939 63.158 0.84 0.00 0.00 2.73
176 177 2.433664 CGGGCCTCACGGTTGTAC 60.434 66.667 0.84 0.00 0.00 2.90
178 179 4.309950 GTCGGGCCTCACGGTTGT 62.310 66.667 0.84 0.00 0.00 3.32
183 184 4.189188 CTACCGTCGGGCCTCACG 62.189 72.222 17.28 17.19 36.48 4.35
184 185 1.750399 TACTACCGTCGGGCCTCAC 60.750 63.158 17.28 0.00 36.48 3.51
186 187 1.452833 AGTACTACCGTCGGGCCTC 60.453 63.158 17.28 2.09 36.48 4.70
188 189 2.803479 CAGTACTACCGTCGGGCC 59.197 66.667 17.28 0.00 36.48 5.80
189 190 2.103736 GCAGTACTACCGTCGGGC 59.896 66.667 17.28 3.25 36.48 6.13
190 191 0.747283 AGAGCAGTACTACCGTCGGG 60.747 60.000 17.28 0.47 40.11 5.14
193 194 1.401199 GACCAGAGCAGTACTACCGTC 59.599 57.143 0.00 0.00 0.00 4.79
195 196 0.739561 GGACCAGAGCAGTACTACCG 59.260 60.000 0.00 0.00 0.00 4.02
196 197 2.146920 AGGACCAGAGCAGTACTACC 57.853 55.000 0.00 0.00 0.00 3.18
198 199 3.522343 TCTGTAGGACCAGAGCAGTACTA 59.478 47.826 0.00 0.00 36.57 1.82
200 201 2.424246 GTCTGTAGGACCAGAGCAGTAC 59.576 54.545 0.00 0.00 41.93 2.73
201 202 2.724454 GTCTGTAGGACCAGAGCAGTA 58.276 52.381 0.00 0.00 41.93 2.74
202 203 1.551452 GTCTGTAGGACCAGAGCAGT 58.449 55.000 0.00 0.00 41.93 4.40
205 206 0.171455 CACGTCTGTAGGACCAGAGC 59.829 60.000 0.00 0.00 41.93 4.09
206 207 0.171455 GCACGTCTGTAGGACCAGAG 59.829 60.000 0.00 0.00 41.93 3.35
208 209 0.532573 ATGCACGTCTGTAGGACCAG 59.467 55.000 0.00 0.00 41.64 4.00
209 210 0.973632 AATGCACGTCTGTAGGACCA 59.026 50.000 0.00 0.00 41.64 4.02
210 211 1.732259 CAAATGCACGTCTGTAGGACC 59.268 52.381 0.00 0.00 41.64 4.46
211 212 2.157668 CACAAATGCACGTCTGTAGGAC 59.842 50.000 0.00 0.00 41.28 3.85
213 214 2.880822 CACAAATGCACGTCTGTAGG 57.119 50.000 0.00 0.00 0.00 3.18
225 226 2.423538 GCAACTACCCTAGGCACAAATG 59.576 50.000 2.05 0.00 0.00 2.32
227 228 1.609580 CGCAACTACCCTAGGCACAAA 60.610 52.381 2.05 0.00 0.00 2.83
230 231 1.153429 CCGCAACTACCCTAGGCAC 60.153 63.158 2.05 0.00 0.00 5.01
231 232 1.196104 AACCGCAACTACCCTAGGCA 61.196 55.000 2.05 0.00 0.00 4.75
232 233 0.743345 CAACCGCAACTACCCTAGGC 60.743 60.000 2.05 0.00 0.00 3.93
233 234 0.611714 ACAACCGCAACTACCCTAGG 59.388 55.000 0.06 0.06 0.00 3.02
234 235 2.494870 AGTACAACCGCAACTACCCTAG 59.505 50.000 0.00 0.00 0.00 3.02
235 236 2.231964 CAGTACAACCGCAACTACCCTA 59.768 50.000 0.00 0.00 0.00 3.53
236 237 1.001633 CAGTACAACCGCAACTACCCT 59.998 52.381 0.00 0.00 0.00 4.34
237 238 1.435577 CAGTACAACCGCAACTACCC 58.564 55.000 0.00 0.00 0.00 3.69
238 239 0.794473 GCAGTACAACCGCAACTACC 59.206 55.000 0.00 0.00 0.00 3.18
239 240 1.504359 TGCAGTACAACCGCAACTAC 58.496 50.000 0.00 0.00 31.46 2.73
240 241 2.465860 ATGCAGTACAACCGCAACTA 57.534 45.000 0.00 0.00 39.48 2.24
242 243 1.665735 CCAATGCAGTACAACCGCAAC 60.666 52.381 0.00 0.00 39.48 4.17
244 245 0.250510 TCCAATGCAGTACAACCGCA 60.251 50.000 0.00 0.00 40.50 5.69
245 246 1.094785 ATCCAATGCAGTACAACCGC 58.905 50.000 0.00 0.00 0.00 5.68
246 247 3.500982 CAAATCCAATGCAGTACAACCG 58.499 45.455 0.00 0.00 0.00 4.44
247 248 3.253230 GCAAATCCAATGCAGTACAACC 58.747 45.455 0.00 0.00 43.29 3.77
256 257 2.096119 GCACAAACTGCAAATCCAATGC 60.096 45.455 0.00 0.00 46.29 3.56
257 258 3.799137 GCACAAACTGCAAATCCAATG 57.201 42.857 0.00 0.00 46.29 2.82
329 330 9.927668 AAAAATGCAGCTATTAGTATTGTGTTT 57.072 25.926 0.00 0.00 0.00 2.83
331 332 8.960591 AGAAAAATGCAGCTATTAGTATTGTGT 58.039 29.630 0.00 0.00 0.00 3.72
332 333 9.443283 GAGAAAAATGCAGCTATTAGTATTGTG 57.557 33.333 0.00 0.00 0.00 3.33
333 334 9.177608 TGAGAAAAATGCAGCTATTAGTATTGT 57.822 29.630 0.00 0.00 0.00 2.71
337 338 9.840427 GTTTTGAGAAAAATGCAGCTATTAGTA 57.160 29.630 0.00 0.00 31.13 1.82
339 340 8.857216 CAGTTTTGAGAAAAATGCAGCTATTAG 58.143 33.333 0.00 0.00 39.21 1.73
341 342 7.436118 TCAGTTTTGAGAAAAATGCAGCTATT 58.564 30.769 4.74 0.00 43.81 1.73
343 344 6.389830 TCAGTTTTGAGAAAAATGCAGCTA 57.610 33.333 4.74 0.00 43.81 3.32
344 345 5.266733 TCAGTTTTGAGAAAAATGCAGCT 57.733 34.783 4.74 0.00 43.81 4.24
356 357 7.568861 GCAAATTTCTTGCATCTCAGTTTTGAG 60.569 37.037 4.64 0.00 46.12 3.02
357 358 6.201425 GCAAATTTCTTGCATCTCAGTTTTGA 59.799 34.615 4.64 0.00 44.34 2.69
358 359 6.360329 GCAAATTTCTTGCATCTCAGTTTTG 58.640 36.000 4.64 0.00 44.34 2.44
370 371 5.713025 TCATCCTAGTTGCAAATTTCTTGC 58.287 37.500 4.05 2.52 45.11 4.01
371 372 7.541162 TCATCATCCTAGTTGCAAATTTCTTG 58.459 34.615 4.05 0.00 0.00 3.02
372 373 7.707624 TCATCATCCTAGTTGCAAATTTCTT 57.292 32.000 4.05 0.00 0.00 2.52
373 374 7.707624 TTCATCATCCTAGTTGCAAATTTCT 57.292 32.000 4.05 0.00 0.00 2.52
374 375 8.761575 TTTTCATCATCCTAGTTGCAAATTTC 57.238 30.769 4.05 0.00 0.00 2.17
406 407 8.914011 TCCCTTTTTCTTTCTTCTCCTTTTTAG 58.086 33.333 0.00 0.00 0.00 1.85
407 408 8.692710 GTCCCTTTTTCTTTCTTCTCCTTTTTA 58.307 33.333 0.00 0.00 0.00 1.52
409 410 6.667848 TGTCCCTTTTTCTTTCTTCTCCTTTT 59.332 34.615 0.00 0.00 0.00 2.27
410 411 6.194967 TGTCCCTTTTTCTTTCTTCTCCTTT 58.805 36.000 0.00 0.00 0.00 3.11
412 413 5.388599 TGTCCCTTTTTCTTTCTTCTCCT 57.611 39.130 0.00 0.00 0.00 3.69
413 414 6.127451 TGTTTGTCCCTTTTTCTTTCTTCTCC 60.127 38.462 0.00 0.00 0.00 3.71
414 415 6.752351 GTGTTTGTCCCTTTTTCTTTCTTCTC 59.248 38.462 0.00 0.00 0.00 2.87
415 416 6.210584 TGTGTTTGTCCCTTTTTCTTTCTTCT 59.789 34.615 0.00 0.00 0.00 2.85
416 417 6.394809 TGTGTTTGTCCCTTTTTCTTTCTTC 58.605 36.000 0.00 0.00 0.00 2.87
417 418 6.353404 TGTGTTTGTCCCTTTTTCTTTCTT 57.647 33.333 0.00 0.00 0.00 2.52
418 419 5.993748 TGTGTTTGTCCCTTTTTCTTTCT 57.006 34.783 0.00 0.00 0.00 2.52
423 424 9.589111 TTACTATTTTGTGTTTGTCCCTTTTTC 57.411 29.630 0.00 0.00 0.00 2.29
517 518 8.971073 TCCTTTGTTCTCATTTCTCTTCTTTTT 58.029 29.630 0.00 0.00 0.00 1.94
518 519 8.525290 TCCTTTGTTCTCATTTCTCTTCTTTT 57.475 30.769 0.00 0.00 0.00 2.27
519 520 8.525290 TTCCTTTGTTCTCATTTCTCTTCTTT 57.475 30.769 0.00 0.00 0.00 2.52
520 521 8.525290 TTTCCTTTGTTCTCATTTCTCTTCTT 57.475 30.769 0.00 0.00 0.00 2.52
521 522 8.525290 TTTTCCTTTGTTCTCATTTCTCTTCT 57.475 30.769 0.00 0.00 0.00 2.85
523 524 8.409371 GTCTTTTCCTTTGTTCTCATTTCTCTT 58.591 33.333 0.00 0.00 0.00 2.85
524 525 7.557719 TGTCTTTTCCTTTGTTCTCATTTCTCT 59.442 33.333 0.00 0.00 0.00 3.10
525 526 7.707104 TGTCTTTTCCTTTGTTCTCATTTCTC 58.293 34.615 0.00 0.00 0.00 2.87
526 527 7.645058 TGTCTTTTCCTTTGTTCTCATTTCT 57.355 32.000 0.00 0.00 0.00 2.52
527 528 8.702163 TTTGTCTTTTCCTTTGTTCTCATTTC 57.298 30.769 0.00 0.00 0.00 2.17
529 530 8.066612 TCTTTGTCTTTTCCTTTGTTCTCATT 57.933 30.769 0.00 0.00 0.00 2.57
530 531 7.645058 TCTTTGTCTTTTCCTTTGTTCTCAT 57.355 32.000 0.00 0.00 0.00 2.90
532 533 7.312899 TGTTCTTTGTCTTTTCCTTTGTTCTC 58.687 34.615 0.00 0.00 0.00 2.87
533 534 7.227049 TGTTCTTTGTCTTTTCCTTTGTTCT 57.773 32.000 0.00 0.00 0.00 3.01
534 535 7.812669 TCTTGTTCTTTGTCTTTTCCTTTGTTC 59.187 33.333 0.00 0.00 0.00 3.18
535 536 7.598869 GTCTTGTTCTTTGTCTTTTCCTTTGTT 59.401 33.333 0.00 0.00 0.00 2.83
536 537 7.090808 GTCTTGTTCTTTGTCTTTTCCTTTGT 58.909 34.615 0.00 0.00 0.00 2.83
537 538 7.090173 TGTCTTGTTCTTTGTCTTTTCCTTTG 58.910 34.615 0.00 0.00 0.00 2.77
539 540 6.625960 GCTGTCTTGTTCTTTGTCTTTTCCTT 60.626 38.462 0.00 0.00 0.00 3.36
541 542 5.037385 GCTGTCTTGTTCTTTGTCTTTTCC 58.963 41.667 0.00 0.00 0.00 3.13
542 543 5.640732 TGCTGTCTTGTTCTTTGTCTTTTC 58.359 37.500 0.00 0.00 0.00 2.29
543 544 5.643379 TGCTGTCTTGTTCTTTGTCTTTT 57.357 34.783 0.00 0.00 0.00 2.27
544 545 5.048083 TGTTGCTGTCTTGTTCTTTGTCTTT 60.048 36.000 0.00 0.00 0.00 2.52
545 546 4.458989 TGTTGCTGTCTTGTTCTTTGTCTT 59.541 37.500 0.00 0.00 0.00 3.01
547 548 4.355543 TGTTGCTGTCTTGTTCTTTGTC 57.644 40.909 0.00 0.00 0.00 3.18
548 549 4.485163 GTTGTTGCTGTCTTGTTCTTTGT 58.515 39.130 0.00 0.00 0.00 2.83
549 550 3.859386 GGTTGTTGCTGTCTTGTTCTTTG 59.141 43.478 0.00 0.00 0.00 2.77
551 552 2.427095 GGGTTGTTGCTGTCTTGTTCTT 59.573 45.455 0.00 0.00 0.00 2.52
552 553 2.024414 GGGTTGTTGCTGTCTTGTTCT 58.976 47.619 0.00 0.00 0.00 3.01
553 554 1.748493 TGGGTTGTTGCTGTCTTGTTC 59.252 47.619 0.00 0.00 0.00 3.18
554 555 1.846007 TGGGTTGTTGCTGTCTTGTT 58.154 45.000 0.00 0.00 0.00 2.83
555 556 1.846007 TTGGGTTGTTGCTGTCTTGT 58.154 45.000 0.00 0.00 0.00 3.16
558 559 3.096092 TCTTTTTGGGTTGTTGCTGTCT 58.904 40.909 0.00 0.00 0.00 3.41
559 560 3.186909 GTCTTTTTGGGTTGTTGCTGTC 58.813 45.455 0.00 0.00 0.00 3.51
560 561 2.564947 TGTCTTTTTGGGTTGTTGCTGT 59.435 40.909 0.00 0.00 0.00 4.40
561 562 3.189285 CTGTCTTTTTGGGTTGTTGCTG 58.811 45.455 0.00 0.00 0.00 4.41
562 563 2.168313 CCTGTCTTTTTGGGTTGTTGCT 59.832 45.455 0.00 0.00 0.00 3.91
563 564 2.167487 TCCTGTCTTTTTGGGTTGTTGC 59.833 45.455 0.00 0.00 0.00 4.17
564 565 4.464069 TTCCTGTCTTTTTGGGTTGTTG 57.536 40.909 0.00 0.00 0.00 3.33
565 566 4.284746 TGTTTCCTGTCTTTTTGGGTTGTT 59.715 37.500 0.00 0.00 0.00 2.83
566 567 3.835395 TGTTTCCTGTCTTTTTGGGTTGT 59.165 39.130 0.00 0.00 0.00 3.32
567 568 4.464069 TGTTTCCTGTCTTTTTGGGTTG 57.536 40.909 0.00 0.00 0.00 3.77
569 570 5.491323 TTTTGTTTCCTGTCTTTTTGGGT 57.509 34.783 0.00 0.00 0.00 4.51
570 571 6.112058 TCATTTTGTTTCCTGTCTTTTTGGG 58.888 36.000 0.00 0.00 0.00 4.12
571 572 7.608308 TTCATTTTGTTTCCTGTCTTTTTGG 57.392 32.000 0.00 0.00 0.00 3.28
574 575 8.729756 CCTTTTTCATTTTGTTTCCTGTCTTTT 58.270 29.630 0.00 0.00 0.00 2.27
575 576 7.148255 GCCTTTTTCATTTTGTTTCCTGTCTTT 60.148 33.333 0.00 0.00 0.00 2.52
578 579 5.007626 GGCCTTTTTCATTTTGTTTCCTGTC 59.992 40.000 0.00 0.00 0.00 3.51
579 580 4.881273 GGCCTTTTTCATTTTGTTTCCTGT 59.119 37.500 0.00 0.00 0.00 4.00
580 581 4.275689 GGGCCTTTTTCATTTTGTTTCCTG 59.724 41.667 0.84 0.00 0.00 3.86
581 582 4.080072 TGGGCCTTTTTCATTTTGTTTCCT 60.080 37.500 4.53 0.00 0.00 3.36
582 583 4.203226 TGGGCCTTTTTCATTTTGTTTCC 58.797 39.130 4.53 0.00 0.00 3.13
583 584 5.356751 AGTTGGGCCTTTTTCATTTTGTTTC 59.643 36.000 4.53 0.00 0.00 2.78
585 586 4.639755 CAGTTGGGCCTTTTTCATTTTGTT 59.360 37.500 4.53 0.00 0.00 2.83
586 587 4.080638 TCAGTTGGGCCTTTTTCATTTTGT 60.081 37.500 4.53 0.00 0.00 2.83
588 589 4.408596 TCTCAGTTGGGCCTTTTTCATTTT 59.591 37.500 4.53 0.00 0.00 1.82
590 591 3.321968 GTCTCAGTTGGGCCTTTTTCATT 59.678 43.478 4.53 0.00 0.00 2.57
593 594 2.306847 TGTCTCAGTTGGGCCTTTTTC 58.693 47.619 4.53 0.00 0.00 2.29
594 595 2.452600 TGTCTCAGTTGGGCCTTTTT 57.547 45.000 4.53 0.00 0.00 1.94
595 596 2.242043 CATGTCTCAGTTGGGCCTTTT 58.758 47.619 4.53 0.00 0.00 2.27
596 597 1.145738 ACATGTCTCAGTTGGGCCTTT 59.854 47.619 4.53 0.00 0.00 3.11
597 598 0.773644 ACATGTCTCAGTTGGGCCTT 59.226 50.000 4.53 0.00 0.00 4.35
598 599 0.773644 AACATGTCTCAGTTGGGCCT 59.226 50.000 4.53 0.00 0.00 5.19
599 600 1.168714 GAACATGTCTCAGTTGGGCC 58.831 55.000 0.00 0.00 0.00 5.80
600 601 2.191128 AGAACATGTCTCAGTTGGGC 57.809 50.000 0.00 0.00 0.00 5.36
601 602 6.824305 AATTTAGAACATGTCTCAGTTGGG 57.176 37.500 0.00 0.00 37.84 4.12
603 604 9.334693 GCTAAAATTTAGAACATGTCTCAGTTG 57.665 33.333 16.22 0.00 37.84 3.16
604 605 9.066892 TGCTAAAATTTAGAACATGTCTCAGTT 57.933 29.630 16.22 0.00 37.84 3.16
605 606 8.621532 TGCTAAAATTTAGAACATGTCTCAGT 57.378 30.769 16.22 0.00 37.84 3.41
663 664 9.445786 CGTTCACTTTTAATTGTAGTTGTTGAT 57.554 29.630 0.00 0.00 0.00 2.57
664 665 7.911205 CCGTTCACTTTTAATTGTAGTTGTTGA 59.089 33.333 0.00 0.00 0.00 3.18
668 669 8.286800 TCATCCGTTCACTTTTAATTGTAGTTG 58.713 33.333 0.00 0.00 0.00 3.16
670 671 7.972832 TCATCCGTTCACTTTTAATTGTAGT 57.027 32.000 0.00 0.00 0.00 2.73
671 672 9.113876 GTTTCATCCGTTCACTTTTAATTGTAG 57.886 33.333 0.00 0.00 0.00 2.74
672 673 8.622157 TGTTTCATCCGTTCACTTTTAATTGTA 58.378 29.630 0.00 0.00 0.00 2.41
673 674 7.484975 TGTTTCATCCGTTCACTTTTAATTGT 58.515 30.769 0.00 0.00 0.00 2.71
674 675 7.922505 TGTTTCATCCGTTCACTTTTAATTG 57.077 32.000 0.00 0.00 0.00 2.32
675 676 8.934507 TTTGTTTCATCCGTTCACTTTTAATT 57.065 26.923 0.00 0.00 0.00 1.40
676 677 8.934507 TTTTGTTTCATCCGTTCACTTTTAAT 57.065 26.923 0.00 0.00 0.00 1.40
677 678 8.758633 TTTTTGTTTCATCCGTTCACTTTTAA 57.241 26.923 0.00 0.00 0.00 1.52
730 731 2.310538 CTGAGGGCTTGTGAGGTTTTT 58.689 47.619 0.00 0.00 0.00 1.94
731 732 1.215423 ACTGAGGGCTTGTGAGGTTTT 59.785 47.619 0.00 0.00 0.00 2.43
732 733 0.846693 ACTGAGGGCTTGTGAGGTTT 59.153 50.000 0.00 0.00 0.00 3.27
734 735 1.821061 CGACTGAGGGCTTGTGAGGT 61.821 60.000 0.00 0.00 0.00 3.85
736 737 0.389166 GTCGACTGAGGGCTTGTGAG 60.389 60.000 8.70 0.00 0.00 3.51
737 738 0.827925 AGTCGACTGAGGGCTTGTGA 60.828 55.000 19.30 0.00 0.00 3.58
738 739 0.668706 CAGTCGACTGAGGGCTTGTG 60.669 60.000 36.73 9.65 46.59 3.33
740 741 4.586618 CAGTCGACTGAGGGCTTG 57.413 61.111 36.73 11.17 46.59 4.01
748 749 6.291322 CGATTTTGCTATAACTCAGTCGACTG 60.291 42.308 34.76 34.76 45.08 3.51
749 750 5.744345 CGATTTTGCTATAACTCAGTCGACT 59.256 40.000 13.58 13.58 0.00 4.18
750 751 5.742453 TCGATTTTGCTATAACTCAGTCGAC 59.258 40.000 7.70 7.70 30.57 4.20
751 752 5.886992 TCGATTTTGCTATAACTCAGTCGA 58.113 37.500 0.00 0.00 32.76 4.20
752 753 6.755461 ATCGATTTTGCTATAACTCAGTCG 57.245 37.500 0.00 0.00 0.00 4.18
776 777 8.688151 CCCCTCCGTGTCAAAAATAAATAAATA 58.312 33.333 0.00 0.00 0.00 1.40
778 779 6.071278 CCCCCTCCGTGTCAAAAATAAATAAA 60.071 38.462 0.00 0.00 0.00 1.40
779 780 5.419471 CCCCCTCCGTGTCAAAAATAAATAA 59.581 40.000 0.00 0.00 0.00 1.40
780 781 4.951094 CCCCCTCCGTGTCAAAAATAAATA 59.049 41.667 0.00 0.00 0.00 1.40
795 796 1.542547 CCGAAATTGATACCCCCTCCG 60.543 57.143 0.00 0.00 0.00 4.63
796 797 1.493446 ACCGAAATTGATACCCCCTCC 59.507 52.381 0.00 0.00 0.00 4.30
802 803 3.003689 CCATGCTCACCGAAATTGATACC 59.996 47.826 0.00 0.00 0.00 2.73
846 852 0.253160 ATCTCAGGGCAGGGGTTACA 60.253 55.000 0.00 0.00 0.00 2.41
853 859 0.690411 AGAGTGGATCTCAGGGCAGG 60.690 60.000 0.00 0.00 44.98 4.85
877 883 1.758592 CAAGGTTGGGGACGGAAGA 59.241 57.895 0.00 0.00 0.00 2.87
982 1000 1.000843 CATGTTCGACAGTGAGGTGGA 59.999 52.381 0.00 0.00 0.00 4.02
1116 1134 1.554617 TCACCAAGGAGATTGCATCGA 59.445 47.619 0.00 0.00 37.60 3.59
1118 1136 1.667724 CGTCACCAAGGAGATTGCATC 59.332 52.381 0.00 0.00 37.60 3.91
1285 1303 2.167281 CAGGGATCCGGCATGTAGATAG 59.833 54.545 5.45 0.00 0.00 2.08
1500 1519 4.876107 ACAATAGTCCAAATCGACATGTCC 59.124 41.667 20.03 3.42 35.07 4.02
1617 1636 6.070767 TCCAAGTTCCTGACTATGACTTTAGG 60.071 42.308 0.00 0.00 37.72 2.69
1632 1651 6.159398 ACATATTCTCCTGATTCCAAGTTCCT 59.841 38.462 0.00 0.00 0.00 3.36
1695 1715 1.074889 TGGGAACAGCTTAACCCCTTC 59.925 52.381 14.02 0.00 41.44 3.46
1748 1770 9.113838 ACCAATAACAAGCTTACATTGATCTAG 57.886 33.333 20.29 10.77 0.00 2.43
1756 1778 8.677148 AATATCGACCAATAACAAGCTTACAT 57.323 30.769 0.00 0.00 0.00 2.29
1975 2037 3.135712 TGTCCTCAACAGAGCCTAAACAA 59.864 43.478 0.00 0.00 32.81 2.83
1977 2039 3.402628 TGTCCTCAACAGAGCCTAAAC 57.597 47.619 0.00 0.00 32.81 2.01
2037 2099 1.108727 TGCTGGCAGTTGTCTTTGGG 61.109 55.000 17.16 0.00 0.00 4.12
2158 2220 6.033341 GCACAAAACTGAACACATCTAACAA 58.967 36.000 0.00 0.00 0.00 2.83
2175 2237 4.686554 GTGGTGTTTGTAAACTGCACAAAA 59.313 37.500 8.74 0.00 44.90 2.44
2176 2238 4.238514 GTGGTGTTTGTAAACTGCACAAA 58.761 39.130 8.74 0.00 42.12 2.83
2180 2242 2.729194 AGGTGGTGTTTGTAAACTGCA 58.271 42.857 8.74 0.00 39.59 4.41
2202 2264 5.480642 AGGATGATTAGTGGATAGTGCAG 57.519 43.478 0.00 0.00 0.00 4.41
2262 2324 5.768164 ACTCTTATCGGGAAAACACAAATGT 59.232 36.000 0.00 0.00 42.46 2.71
2950 3012 3.114606 TGAGGTAGGATCATCCAAGCAA 58.885 45.455 6.42 0.00 39.61 3.91
3042 3111 7.820648 ACTCATGCATAAAAACGAAGAGATTT 58.179 30.769 0.00 0.00 0.00 2.17
3239 3308 5.104109 TGGCAGAATTAACACCCTAGCTTAT 60.104 40.000 0.00 0.00 0.00 1.73
3391 3474 4.510038 AACACAGAATCTTGCAATGTCC 57.490 40.909 0.00 0.00 0.00 4.02
3394 3477 6.831727 TTCAAAACACAGAATCTTGCAATG 57.168 33.333 0.00 0.00 0.00 2.82
3423 3506 1.403972 GACGCGTTAGAGTTGCTCCG 61.404 60.000 15.53 0.00 0.00 4.63
3424 3507 1.403972 CGACGCGTTAGAGTTGCTCC 61.404 60.000 15.53 0.00 0.00 4.70
3434 3537 1.015085 CCATTTGGGTCGACGCGTTA 61.015 55.000 25.18 14.34 0.00 3.18
3451 3916 1.074319 GCGAAATAGACACGCGTCCA 61.074 55.000 9.86 0.00 43.73 4.02
3462 3927 4.381566 CCAAACGGACAAAAAGCGAAATAG 59.618 41.667 0.00 0.00 0.00 1.73
3464 3929 3.120041 CCAAACGGACAAAAAGCGAAAT 58.880 40.909 0.00 0.00 0.00 2.17
3467 3932 0.382515 CCCAAACGGACAAAAAGCGA 59.617 50.000 0.00 0.00 0.00 4.93
3559 4061 4.064388 GCAAAAAGAGCTAAAAATGGCCA 58.936 39.130 8.56 8.56 0.00 5.36
3775 4283 6.647895 GGAAACTCACATTCAATTGCAAGATT 59.352 34.615 4.94 0.00 0.00 2.40
3784 4292 5.335897 CGTGATTGGGAAACTCACATTCAAT 60.336 40.000 5.34 0.00 40.49 2.57
3888 4396 5.617252 TCTACGATCAAGGGTTTCAGTTTT 58.383 37.500 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.