Multiple sequence alignment - TraesCS1B01G264500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G264500 chr1B 100.000 2351 0 0 1 2351 465366464 465364114 0.000000e+00 4342.0
1 TraesCS1B01G264500 chr1D 88.531 1709 99 30 281 1921 345414013 345415692 0.000000e+00 1980.0
2 TraesCS1B01G264500 chr1A 87.947 1427 103 25 1 1387 445526768 445528165 0.000000e+00 1618.0
3 TraesCS1B01G264500 chr1A 91.008 367 18 5 1562 1916 445533650 445534013 4.540000e-132 481.0
4 TraesCS1B01G264500 chr1A 93.377 151 9 1 1380 1529 445533498 445533648 3.040000e-54 222.0
5 TraesCS1B01G264500 chr4B 93.052 403 28 0 1949 2351 613900984 613900582 7.240000e-165 590.0
6 TraesCS1B01G264500 chr4B 85.333 375 49 6 1977 2348 637423072 637423443 1.320000e-102 383.0
7 TraesCS1B01G264500 chr5B 92.537 402 29 1 1949 2349 316666514 316666113 2.030000e-160 575.0
8 TraesCS1B01G264500 chr3B 91.832 404 32 1 1949 2351 115186729 115187132 1.580000e-156 562.0
9 TraesCS1B01G264500 chr3B 78.421 380 65 9 216 578 78609479 78609100 5.050000e-57 231.0
10 TraesCS1B01G264500 chr7B 91.067 403 35 1 1949 2351 641780524 641780123 5.710000e-151 544.0
11 TraesCS1B01G264500 chr7B 88.861 404 43 2 1949 2351 704613222 704613624 1.620000e-136 496.0
12 TraesCS1B01G264500 chr7B 85.464 399 53 5 1954 2351 750210844 750210450 6.050000e-111 411.0
13 TraesCS1B01G264500 chr6B 90.819 403 37 0 1949 2351 476196141 476195739 7.390000e-150 540.0
14 TraesCS1B01G264500 chr6B 84.255 235 34 1 346 577 52574992 52575226 2.350000e-55 226.0
15 TraesCS1B01G264500 chr5A 82.915 398 64 4 1955 2351 44879982 44880376 2.870000e-94 355.0
16 TraesCS1B01G264500 chr5A 82.500 280 36 9 301 576 266443166 266443436 1.400000e-57 233.0
17 TraesCS1B01G264500 chrUn 87.446 231 26 1 349 576 92639052 92639282 1.790000e-66 263.0
18 TraesCS1B01G264500 chr2B 79.365 378 56 13 216 574 433123368 433123742 1.800000e-61 246.0
19 TraesCS1B01G264500 chr2B 81.022 274 45 7 311 579 157716292 157716563 6.580000e-51 211.0
20 TraesCS1B01G264500 chr4D 82.671 277 42 4 308 578 7741374 7741650 8.400000e-60 241.0
21 TraesCS1B01G264500 chr7D 84.120 233 34 1 349 578 388970220 388970452 3.040000e-54 222.0
22 TraesCS1B01G264500 chr7D 93.023 43 1 1 540 582 238231872 238231912 7.020000e-06 62.1
23 TraesCS1B01G264500 chr3A 80.228 263 38 10 301 551 16634980 16634720 3.990000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G264500 chr1B 465364114 465366464 2350 True 4342.0 4342 100.0000 1 2351 1 chr1B.!!$R1 2350
1 TraesCS1B01G264500 chr1D 345414013 345415692 1679 False 1980.0 1980 88.5310 281 1921 1 chr1D.!!$F1 1640
2 TraesCS1B01G264500 chr1A 445526768 445528165 1397 False 1618.0 1618 87.9470 1 1387 1 chr1A.!!$F1 1386
3 TraesCS1B01G264500 chr1A 445533498 445534013 515 False 351.5 481 92.1925 1380 1916 2 chr1A.!!$F2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 857 0.613292 AAGCGAGGCAGAGGAGAGAA 60.613 55.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2080 0.031994 AAACCGTTTGTGGATGCTGC 59.968 50.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.498304 TCTGAAGTGTTTTGAAAGCTTGATC 58.502 36.000 0.00 0.00 0.00 2.92
119 122 5.911752 TGAAACAAATTTAGAAAGCCTGCA 58.088 33.333 0.00 0.00 0.00 4.41
123 126 6.849588 ACAAATTTAGAAAGCCTGCAAAAG 57.150 33.333 0.00 0.00 0.00 2.27
128 131 8.681486 AATTTAGAAAGCCTGCAAAAGAAATT 57.319 26.923 0.00 0.00 0.00 1.82
417 428 1.229428 CATGTTGACCAGCGAACAGT 58.771 50.000 0.00 0.00 35.60 3.55
423 434 1.295792 GACCAGCGAACAGTTGTTGA 58.704 50.000 1.62 0.00 38.56 3.18
424 435 1.003866 GACCAGCGAACAGTTGTTGAC 60.004 52.381 1.62 0.00 38.56 3.18
477 488 1.375908 GGGCTGAACTCGTGCATGA 60.376 57.895 8.64 8.64 0.00 3.07
520 550 4.787135 ACCAAACACCCAAAAATGGATT 57.213 36.364 0.00 0.00 0.00 3.01
527 557 5.147032 ACACCCAAAAATGGATTGAGAAGA 58.853 37.500 0.00 0.00 0.00 2.87
528 558 5.602145 ACACCCAAAAATGGATTGAGAAGAA 59.398 36.000 0.00 0.00 0.00 2.52
531 561 7.172019 CACCCAAAAATGGATTGAGAAGAAAAG 59.828 37.037 0.00 0.00 0.00 2.27
555 585 1.595311 AACCTCATGCACCCTCCATA 58.405 50.000 0.00 0.00 0.00 2.74
563 593 3.046283 TGCACCCTCCATACACTCTAT 57.954 47.619 0.00 0.00 0.00 1.98
569 599 4.099573 ACCCTCCATACACTCTATCAAACG 59.900 45.833 0.00 0.00 0.00 3.60
593 623 2.896685 CCCTAAAATGCACCCTTTGTCA 59.103 45.455 0.00 0.00 0.00 3.58
594 624 3.323403 CCCTAAAATGCACCCTTTGTCAA 59.677 43.478 0.00 0.00 0.00 3.18
626 656 2.092753 ACATAGCTCCCATGGTGAAGTG 60.093 50.000 11.73 4.97 0.00 3.16
636 672 3.117926 CCATGGTGAAGTGGTCATATGGA 60.118 47.826 2.57 0.00 46.58 3.41
672 727 0.958382 CCGCCATTTTCAACGAGGGA 60.958 55.000 0.00 0.00 0.00 4.20
788 844 3.629858 GCATGCCTTTAAAGCGAGG 57.370 52.632 6.36 0.00 36.09 4.63
800 857 0.613292 AAGCGAGGCAGAGGAGAGAA 60.613 55.000 0.00 0.00 0.00 2.87
806 863 1.344191 GGCAGAGGAGAGAAGGGCAT 61.344 60.000 0.00 0.00 0.00 4.40
1171 1234 1.521681 GAGATGCGGGTACAGGTGC 60.522 63.158 0.00 0.00 0.00 5.01
1399 1468 1.801913 CGGACTCAGCGAACGAAGG 60.802 63.158 0.00 0.00 0.00 3.46
1406 1476 0.602905 CAGCGAACGAAGGAAGGGTT 60.603 55.000 0.00 0.00 0.00 4.11
1466 1536 2.190756 GGTCAATCTCCGACTCCGT 58.809 57.895 0.00 0.00 33.73 4.69
1560 1630 4.473520 GCTGCGGCTTAGCTCCCA 62.474 66.667 11.21 0.00 38.14 4.37
1564 1634 2.838974 GCGGCTTAGCTCCCATTGC 61.839 63.158 3.59 0.00 0.00 3.56
1590 1661 2.593978 CGTCGTAGGGGAGGAGGA 59.406 66.667 0.00 0.00 31.03 3.71
1690 1772 3.968649 TGCTCTTGTGATGCTCAAAAAC 58.031 40.909 0.00 0.00 0.00 2.43
1729 1811 0.387929 TGTCGACAACTGGACCAGTC 59.612 55.000 27.28 14.28 44.62 3.51
1845 1927 5.940192 ATATGAAACACACGCTTTCAAGA 57.060 34.783 2.62 0.00 40.22 3.02
1847 1929 2.096819 TGAAACACACGCTTTCAAGACC 59.903 45.455 0.00 0.00 35.23 3.85
1848 1930 1.745232 AACACACGCTTTCAAGACCA 58.255 45.000 0.00 0.00 0.00 4.02
1872 1954 4.917906 ATTCAGACAAGTTAAGAGCCCT 57.082 40.909 0.00 0.00 0.00 5.19
1916 1999 3.863424 CCACACGGATACAGAACATACAC 59.137 47.826 0.00 0.00 0.00 2.90
1921 2004 5.687730 CACGGATACAGAACATACACAGATC 59.312 44.000 0.00 0.00 0.00 2.75
1922 2005 5.594725 ACGGATACAGAACATACACAGATCT 59.405 40.000 0.00 0.00 0.00 2.75
1923 2006 6.096987 ACGGATACAGAACATACACAGATCTT 59.903 38.462 0.00 0.00 0.00 2.40
1924 2007 6.419116 CGGATACAGAACATACACAGATCTTG 59.581 42.308 0.00 0.00 0.00 3.02
1925 2008 6.201806 GGATACAGAACATACACAGATCTTGC 59.798 42.308 0.00 0.00 0.00 4.01
1926 2009 4.898320 ACAGAACATACACAGATCTTGCA 58.102 39.130 0.00 0.00 0.00 4.08
1927 2010 4.934001 ACAGAACATACACAGATCTTGCAG 59.066 41.667 0.00 0.00 0.00 4.41
1928 2011 5.173664 CAGAACATACACAGATCTTGCAGA 58.826 41.667 0.00 0.00 0.00 4.26
1929 2012 5.063186 CAGAACATACACAGATCTTGCAGAC 59.937 44.000 0.00 0.00 0.00 3.51
1930 2013 4.541973 ACATACACAGATCTTGCAGACA 57.458 40.909 0.00 0.00 0.00 3.41
1931 2014 4.898320 ACATACACAGATCTTGCAGACAA 58.102 39.130 0.00 0.00 0.00 3.18
1962 2045 3.905249 GGGGGAATGAAGACGCAC 58.095 61.111 0.00 0.00 0.00 5.34
1963 2046 2.106683 GGGGGAATGAAGACGCACG 61.107 63.158 0.00 0.00 0.00 5.34
1964 2047 1.079405 GGGGAATGAAGACGCACGA 60.079 57.895 0.00 0.00 0.00 4.35
1965 2048 0.672401 GGGGAATGAAGACGCACGAA 60.672 55.000 0.00 0.00 0.00 3.85
1966 2049 0.721718 GGGAATGAAGACGCACGAAG 59.278 55.000 0.00 0.00 0.00 3.79
1967 2050 0.095417 GGAATGAAGACGCACGAAGC 59.905 55.000 0.00 0.00 40.87 3.86
2007 2090 2.757099 CCCCAAGGCAGCATCCAC 60.757 66.667 0.00 0.00 0.00 4.02
2008 2091 2.036098 CCCAAGGCAGCATCCACA 59.964 61.111 0.00 0.00 0.00 4.17
2009 2092 1.607178 CCCAAGGCAGCATCCACAA 60.607 57.895 0.00 0.00 0.00 3.33
2010 2093 1.186917 CCCAAGGCAGCATCCACAAA 61.187 55.000 0.00 0.00 0.00 2.83
2011 2094 0.037975 CCAAGGCAGCATCCACAAAC 60.038 55.000 0.00 0.00 0.00 2.93
2012 2095 0.387622 CAAGGCAGCATCCACAAACG 60.388 55.000 0.00 0.00 0.00 3.60
2013 2096 1.526575 AAGGCAGCATCCACAAACGG 61.527 55.000 0.00 0.00 0.00 4.44
2014 2097 2.268076 GGCAGCATCCACAAACGGT 61.268 57.895 0.00 0.00 0.00 4.83
2015 2098 1.659794 GCAGCATCCACAAACGGTT 59.340 52.632 0.00 0.00 0.00 4.44
2016 2099 0.031994 GCAGCATCCACAAACGGTTT 59.968 50.000 0.00 0.00 0.00 3.27
2017 2100 1.930371 GCAGCATCCACAAACGGTTTC 60.930 52.381 2.51 0.00 0.00 2.78
2018 2101 0.591170 AGCATCCACAAACGGTTTCG 59.409 50.000 2.51 2.70 43.02 3.46
2019 2102 0.589223 GCATCCACAAACGGTTTCGA 59.411 50.000 2.51 0.43 40.11 3.71
2020 2103 1.002251 GCATCCACAAACGGTTTCGAA 60.002 47.619 2.51 0.00 40.11 3.71
2021 2104 2.541999 GCATCCACAAACGGTTTCGAAA 60.542 45.455 6.47 6.47 40.11 3.46
2022 2105 2.828874 TCCACAAACGGTTTCGAAAC 57.171 45.000 28.83 28.83 40.11 2.78
2023 2106 2.358015 TCCACAAACGGTTTCGAAACT 58.642 42.857 33.23 17.22 38.89 2.66
2024 2107 2.748532 TCCACAAACGGTTTCGAAACTT 59.251 40.909 33.23 21.45 38.89 2.66
2025 2108 3.937706 TCCACAAACGGTTTCGAAACTTA 59.062 39.130 33.23 9.05 38.89 2.24
2026 2109 4.030366 CCACAAACGGTTTCGAAACTTAC 58.970 43.478 33.23 19.71 38.89 2.34
2027 2110 4.437121 CCACAAACGGTTTCGAAACTTACA 60.437 41.667 33.23 0.63 38.89 2.41
2028 2111 5.087397 CACAAACGGTTTCGAAACTTACAA 58.913 37.500 33.23 0.00 38.89 2.41
2029 2112 5.568296 CACAAACGGTTTCGAAACTTACAAA 59.432 36.000 33.23 0.00 38.89 2.83
2030 2113 5.568677 ACAAACGGTTTCGAAACTTACAAAC 59.431 36.000 33.23 17.85 38.89 2.93
2031 2114 4.277257 ACGGTTTCGAAACTTACAAACC 57.723 40.909 33.23 18.53 42.97 3.27
2032 2115 3.688673 ACGGTTTCGAAACTTACAAACCA 59.311 39.130 33.23 0.00 45.54 3.67
2033 2116 4.155644 ACGGTTTCGAAACTTACAAACCAA 59.844 37.500 33.23 0.00 45.54 3.67
2034 2117 5.094134 CGGTTTCGAAACTTACAAACCAAA 58.906 37.500 33.23 0.00 45.54 3.28
2035 2118 5.572126 CGGTTTCGAAACTTACAAACCAAAA 59.428 36.000 33.23 0.00 45.54 2.44
2036 2119 6.253942 CGGTTTCGAAACTTACAAACCAAAAT 59.746 34.615 33.23 0.00 45.54 1.82
2037 2120 7.431668 CGGTTTCGAAACTTACAAACCAAAATA 59.568 33.333 33.23 0.00 45.54 1.40
2038 2121 9.085250 GGTTTCGAAACTTACAAACCAAAATAA 57.915 29.630 33.23 0.00 44.90 1.40
2050 2133 8.487313 ACAAACCAAAATAAAAGAAGTTCCAC 57.513 30.769 0.00 0.00 0.00 4.02
2051 2134 8.097662 ACAAACCAAAATAAAAGAAGTTCCACA 58.902 29.630 0.00 0.00 0.00 4.17
2052 2135 9.108284 CAAACCAAAATAAAAGAAGTTCCACAT 57.892 29.630 0.00 0.00 0.00 3.21
2053 2136 8.661352 AACCAAAATAAAAGAAGTTCCACATG 57.339 30.769 0.00 0.00 0.00 3.21
2054 2137 6.705825 ACCAAAATAAAAGAAGTTCCACATGC 59.294 34.615 0.00 0.00 0.00 4.06
2055 2138 6.128849 CCAAAATAAAAGAAGTTCCACATGCG 60.129 38.462 0.00 0.00 0.00 4.73
2056 2139 2.422276 AAAAGAAGTTCCACATGCGC 57.578 45.000 0.00 0.00 0.00 6.09
2057 2140 1.317613 AAAGAAGTTCCACATGCGCA 58.682 45.000 14.96 14.96 0.00 6.09
2058 2141 0.877071 AAGAAGTTCCACATGCGCAG 59.123 50.000 18.32 10.85 0.00 5.18
2076 2159 4.799824 CGGCCCGGCAATGCAAAG 62.800 66.667 12.58 0.00 0.00 2.77
2077 2160 3.694538 GGCCCGGCAATGCAAAGT 61.695 61.111 12.58 0.00 0.00 2.66
2078 2161 2.343387 GCCCGGCAATGCAAAGTT 59.657 55.556 7.79 0.00 0.00 2.66
2079 2162 2.028733 GCCCGGCAATGCAAAGTTG 61.029 57.895 7.79 0.00 0.00 3.16
2093 2176 4.488126 CAAAGTTGCAACTAGCTAGCAA 57.512 40.909 31.31 16.66 45.07 3.91
2101 2184 7.857734 TTGCAACTAGCTAGCAAATATAACA 57.142 32.000 20.91 2.40 44.39 2.41
2102 2185 8.450578 TTGCAACTAGCTAGCAAATATAACAT 57.549 30.769 20.91 0.00 44.39 2.71
2103 2186 9.554395 TTGCAACTAGCTAGCAAATATAACATA 57.446 29.630 20.91 0.00 44.39 2.29
2104 2187 8.988934 TGCAACTAGCTAGCAAATATAACATAC 58.011 33.333 20.91 0.00 45.94 2.39
2105 2188 8.988934 GCAACTAGCTAGCAAATATAACATACA 58.011 33.333 20.91 0.00 41.15 2.29
2118 2201 9.772973 AAATATAACATACATAAACTCTCGGCA 57.227 29.630 0.00 0.00 0.00 5.69
2119 2202 9.772973 AATATAACATACATAAACTCTCGGCAA 57.227 29.630 0.00 0.00 0.00 4.52
2120 2203 9.772973 ATATAACATACATAAACTCTCGGCAAA 57.227 29.630 0.00 0.00 0.00 3.68
2121 2204 8.677148 ATAACATACATAAACTCTCGGCAAAT 57.323 30.769 0.00 0.00 0.00 2.32
2122 2205 6.604735 ACATACATAAACTCTCGGCAAATC 57.395 37.500 0.00 0.00 0.00 2.17
2123 2206 6.112734 ACATACATAAACTCTCGGCAAATCA 58.887 36.000 0.00 0.00 0.00 2.57
2124 2207 6.767902 ACATACATAAACTCTCGGCAAATCAT 59.232 34.615 0.00 0.00 0.00 2.45
2125 2208 7.931407 ACATACATAAACTCTCGGCAAATCATA 59.069 33.333 0.00 0.00 0.00 2.15
2126 2209 8.773645 CATACATAAACTCTCGGCAAATCATAA 58.226 33.333 0.00 0.00 0.00 1.90
2127 2210 7.251704 ACATAAACTCTCGGCAAATCATAAG 57.748 36.000 0.00 0.00 0.00 1.73
2128 2211 4.622701 AAACTCTCGGCAAATCATAAGC 57.377 40.909 0.00 0.00 0.00 3.09
2129 2212 3.550437 ACTCTCGGCAAATCATAAGCT 57.450 42.857 0.00 0.00 0.00 3.74
2130 2213 4.672587 ACTCTCGGCAAATCATAAGCTA 57.327 40.909 0.00 0.00 0.00 3.32
2131 2214 5.023533 ACTCTCGGCAAATCATAAGCTAA 57.976 39.130 0.00 0.00 0.00 3.09
2132 2215 4.811557 ACTCTCGGCAAATCATAAGCTAAC 59.188 41.667 0.00 0.00 0.00 2.34
2133 2216 5.023533 TCTCGGCAAATCATAAGCTAACT 57.976 39.130 0.00 0.00 0.00 2.24
2134 2217 5.050490 TCTCGGCAAATCATAAGCTAACTC 58.950 41.667 0.00 0.00 0.00 3.01
2135 2218 4.765273 TCGGCAAATCATAAGCTAACTCA 58.235 39.130 0.00 0.00 0.00 3.41
2136 2219 5.182487 TCGGCAAATCATAAGCTAACTCAA 58.818 37.500 0.00 0.00 0.00 3.02
2137 2220 5.645929 TCGGCAAATCATAAGCTAACTCAAA 59.354 36.000 0.00 0.00 0.00 2.69
2138 2221 6.150307 TCGGCAAATCATAAGCTAACTCAAAA 59.850 34.615 0.00 0.00 0.00 2.44
2139 2222 6.470235 CGGCAAATCATAAGCTAACTCAAAAG 59.530 38.462 0.00 0.00 0.00 2.27
2140 2223 7.538575 GGCAAATCATAAGCTAACTCAAAAGA 58.461 34.615 0.00 0.00 0.00 2.52
2141 2224 7.486232 GGCAAATCATAAGCTAACTCAAAAGAC 59.514 37.037 0.00 0.00 0.00 3.01
2142 2225 8.239998 GCAAATCATAAGCTAACTCAAAAGACT 58.760 33.333 0.00 0.00 0.00 3.24
2143 2226 9.766277 CAAATCATAAGCTAACTCAAAAGACTC 57.234 33.333 0.00 0.00 0.00 3.36
2144 2227 9.507329 AAATCATAAGCTAACTCAAAAGACTCA 57.493 29.630 0.00 0.00 0.00 3.41
2145 2228 9.507329 AATCATAAGCTAACTCAAAAGACTCAA 57.493 29.630 0.00 0.00 0.00 3.02
2146 2229 8.539770 TCATAAGCTAACTCAAAAGACTCAAG 57.460 34.615 0.00 0.00 0.00 3.02
2147 2230 5.681337 AAGCTAACTCAAAAGACTCAAGC 57.319 39.130 0.00 0.00 0.00 4.01
2148 2231 4.967036 AGCTAACTCAAAAGACTCAAGCT 58.033 39.130 0.00 0.00 33.16 3.74
2149 2232 5.372373 AGCTAACTCAAAAGACTCAAGCTT 58.628 37.500 0.00 0.00 34.26 3.74
2150 2233 5.238214 AGCTAACTCAAAAGACTCAAGCTTG 59.762 40.000 20.81 20.81 34.26 4.01
2151 2234 3.978718 ACTCAAAAGACTCAAGCTTGC 57.021 42.857 21.99 8.01 0.00 4.01
2152 2235 3.282021 ACTCAAAAGACTCAAGCTTGCA 58.718 40.909 21.99 9.71 0.00 4.08
2153 2236 3.065925 ACTCAAAAGACTCAAGCTTGCAC 59.934 43.478 21.99 14.12 0.00 4.57
2154 2237 3.282021 TCAAAAGACTCAAGCTTGCACT 58.718 40.909 21.99 16.00 0.00 4.40
2155 2238 3.313526 TCAAAAGACTCAAGCTTGCACTC 59.686 43.478 21.99 14.30 0.00 3.51
2156 2239 1.889545 AAGACTCAAGCTTGCACTCC 58.110 50.000 21.99 8.52 0.00 3.85
2157 2240 1.055040 AGACTCAAGCTTGCACTCCT 58.945 50.000 21.99 10.54 0.00 3.69
2158 2241 1.419387 AGACTCAAGCTTGCACTCCTT 59.581 47.619 21.99 0.08 0.00 3.36
2159 2242 1.534595 GACTCAAGCTTGCACTCCTTG 59.465 52.381 21.99 11.86 37.80 3.61
2160 2243 1.133976 ACTCAAGCTTGCACTCCTTGT 60.134 47.619 21.99 6.91 37.72 3.16
2161 2244 1.952296 CTCAAGCTTGCACTCCTTGTT 59.048 47.619 21.99 0.00 37.72 2.83
2162 2245 1.677576 TCAAGCTTGCACTCCTTGTTG 59.322 47.619 21.99 0.00 37.72 3.33
2163 2246 0.386838 AAGCTTGCACTCCTTGTTGC 59.613 50.000 0.00 0.00 0.00 4.17
2164 2247 1.006922 GCTTGCACTCCTTGTTGCC 60.007 57.895 0.00 0.00 0.00 4.52
2165 2248 1.458639 GCTTGCACTCCTTGTTGCCT 61.459 55.000 0.00 0.00 0.00 4.75
2166 2249 0.595095 CTTGCACTCCTTGTTGCCTC 59.405 55.000 0.00 0.00 0.00 4.70
2167 2250 1.165907 TTGCACTCCTTGTTGCCTCG 61.166 55.000 0.00 0.00 0.00 4.63
2168 2251 2.970974 GCACTCCTTGTTGCCTCGC 61.971 63.158 0.00 0.00 0.00 5.03
2169 2252 1.302033 CACTCCTTGTTGCCTCGCT 60.302 57.895 0.00 0.00 0.00 4.93
2170 2253 0.886490 CACTCCTTGTTGCCTCGCTT 60.886 55.000 0.00 0.00 0.00 4.68
2171 2254 0.179018 ACTCCTTGTTGCCTCGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
2172 2255 0.519077 CTCCTTGTTGCCTCGCTTTC 59.481 55.000 0.00 0.00 0.00 2.62
2173 2256 0.179032 TCCTTGTTGCCTCGCTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
2174 2257 0.040067 CCTTGTTGCCTCGCTTTCAC 60.040 55.000 0.00 0.00 0.00 3.18
2175 2258 0.662619 CTTGTTGCCTCGCTTTCACA 59.337 50.000 0.00 0.00 0.00 3.58
2176 2259 1.065401 CTTGTTGCCTCGCTTTCACAA 59.935 47.619 0.00 0.00 0.00 3.33
2177 2260 1.317613 TGTTGCCTCGCTTTCACAAT 58.682 45.000 0.00 0.00 0.00 2.71
2178 2261 1.001487 TGTTGCCTCGCTTTCACAATG 60.001 47.619 0.00 0.00 0.00 2.82
2179 2262 0.039256 TTGCCTCGCTTTCACAATGC 60.039 50.000 0.00 0.00 0.00 3.56
2180 2263 1.171549 TGCCTCGCTTTCACAATGCA 61.172 50.000 0.00 0.00 0.00 3.96
2181 2264 0.730494 GCCTCGCTTTCACAATGCAC 60.730 55.000 0.00 0.00 0.00 4.57
2182 2265 0.592637 CCTCGCTTTCACAATGCACA 59.407 50.000 0.00 0.00 0.00 4.57
2183 2266 1.400629 CCTCGCTTTCACAATGCACAG 60.401 52.381 0.00 0.00 0.00 3.66
2184 2267 0.040157 TCGCTTTCACAATGCACAGC 60.040 50.000 0.00 0.00 0.00 4.40
2185 2268 0.039798 CGCTTTCACAATGCACAGCT 60.040 50.000 0.00 0.00 0.00 4.24
2186 2269 1.601162 CGCTTTCACAATGCACAGCTT 60.601 47.619 0.00 0.00 0.00 3.74
2187 2270 1.790623 GCTTTCACAATGCACAGCTTG 59.209 47.619 0.00 0.00 0.00 4.01
2188 2271 2.544277 GCTTTCACAATGCACAGCTTGA 60.544 45.455 4.82 0.00 0.00 3.02
2189 2272 3.859627 GCTTTCACAATGCACAGCTTGAT 60.860 43.478 4.82 0.00 0.00 2.57
2190 2273 3.564235 TTCACAATGCACAGCTTGATC 57.436 42.857 4.82 0.00 0.00 2.92
2191 2274 2.786777 TCACAATGCACAGCTTGATCT 58.213 42.857 4.82 0.00 0.00 2.75
2192 2275 2.486592 TCACAATGCACAGCTTGATCTG 59.513 45.455 4.82 0.00 39.86 2.90
2193 2276 1.201647 ACAATGCACAGCTTGATCTGC 59.798 47.619 4.82 0.00 37.59 4.26
2194 2277 1.472878 CAATGCACAGCTTGATCTGCT 59.527 47.619 7.76 7.76 42.06 4.24
2195 2278 1.380524 ATGCACAGCTTGATCTGCTC 58.619 50.000 10.13 2.41 38.92 4.26
2196 2279 0.675837 TGCACAGCTTGATCTGCTCC 60.676 55.000 10.13 4.37 38.92 4.70
2197 2280 0.675837 GCACAGCTTGATCTGCTCCA 60.676 55.000 10.13 0.00 38.92 3.86
2198 2281 2.017623 GCACAGCTTGATCTGCTCCAT 61.018 52.381 10.13 0.00 38.92 3.41
2199 2282 1.671328 CACAGCTTGATCTGCTCCATG 59.329 52.381 10.13 6.58 38.92 3.66
2200 2283 1.558294 ACAGCTTGATCTGCTCCATGA 59.442 47.619 10.13 0.00 38.92 3.07
2201 2284 2.172930 ACAGCTTGATCTGCTCCATGAT 59.827 45.455 10.13 0.00 38.92 2.45
2202 2285 2.809119 CAGCTTGATCTGCTCCATGATC 59.191 50.000 10.13 0.00 38.92 2.92
2203 2286 2.706723 AGCTTGATCTGCTCCATGATCT 59.293 45.455 7.76 0.00 39.63 2.75
2204 2287 3.068560 GCTTGATCTGCTCCATGATCTC 58.931 50.000 0.00 0.00 39.63 2.75
2205 2288 3.318886 CTTGATCTGCTCCATGATCTCG 58.681 50.000 0.00 0.00 39.63 4.04
2206 2289 2.590821 TGATCTGCTCCATGATCTCGA 58.409 47.619 0.00 0.00 39.63 4.04
2207 2290 3.163467 TGATCTGCTCCATGATCTCGAT 58.837 45.455 0.00 0.00 39.63 3.59
2208 2291 3.193056 TGATCTGCTCCATGATCTCGATC 59.807 47.826 0.00 0.00 39.63 3.69
2218 2301 3.235750 TGATCTCGATCATGAGGTCCT 57.764 47.619 0.09 0.00 44.00 3.85
2219 2302 3.153130 TGATCTCGATCATGAGGTCCTC 58.847 50.000 12.40 12.40 44.00 3.71
2220 2303 1.598882 TCTCGATCATGAGGTCCTCG 58.401 55.000 14.34 8.95 36.61 4.63
2221 2304 1.134068 TCTCGATCATGAGGTCCTCGT 60.134 52.381 14.34 11.26 36.61 4.18
2222 2305 1.265635 CTCGATCATGAGGTCCTCGTC 59.734 57.143 10.93 6.93 32.35 4.20
2223 2306 1.025041 CGATCATGAGGTCCTCGTCA 58.975 55.000 10.93 0.00 41.60 4.35
2224 2307 1.268794 CGATCATGAGGTCCTCGTCAC 60.269 57.143 10.93 4.91 40.47 3.67
2225 2308 0.741326 ATCATGAGGTCCTCGTCACG 59.259 55.000 10.93 0.70 40.47 4.35
2226 2309 1.517257 CATGAGGTCCTCGTCACGC 60.517 63.158 10.93 0.00 40.47 5.34
2227 2310 1.679305 ATGAGGTCCTCGTCACGCT 60.679 57.895 14.34 0.00 40.47 5.07
2228 2311 1.938657 ATGAGGTCCTCGTCACGCTG 61.939 60.000 14.34 0.00 40.47 5.18
2229 2312 3.973267 GAGGTCCTCGTCACGCTGC 62.973 68.421 2.28 0.00 0.00 5.25
2230 2313 4.057428 GGTCCTCGTCACGCTGCT 62.057 66.667 0.00 0.00 0.00 4.24
2231 2314 2.049063 GTCCTCGTCACGCTGCTT 60.049 61.111 0.00 0.00 0.00 3.91
2232 2315 2.089349 GTCCTCGTCACGCTGCTTC 61.089 63.158 0.00 0.00 0.00 3.86
2233 2316 2.811317 CCTCGTCACGCTGCTTCC 60.811 66.667 0.00 0.00 0.00 3.46
2234 2317 2.811317 CTCGTCACGCTGCTTCCC 60.811 66.667 0.00 0.00 0.00 3.97
2235 2318 4.373116 TCGTCACGCTGCTTCCCC 62.373 66.667 0.00 0.00 0.00 4.81
2236 2319 4.680237 CGTCACGCTGCTTCCCCA 62.680 66.667 0.00 0.00 0.00 4.96
2237 2320 2.281484 GTCACGCTGCTTCCCCAA 60.281 61.111 0.00 0.00 0.00 4.12
2238 2321 1.675641 GTCACGCTGCTTCCCCAAT 60.676 57.895 0.00 0.00 0.00 3.16
2239 2322 1.675310 TCACGCTGCTTCCCCAATG 60.675 57.895 0.00 0.00 0.00 2.82
2240 2323 1.675310 CACGCTGCTTCCCCAATGA 60.675 57.895 0.00 0.00 0.00 2.57
2241 2324 1.675641 ACGCTGCTTCCCCAATGAC 60.676 57.895 0.00 0.00 0.00 3.06
2242 2325 2.753966 CGCTGCTTCCCCAATGACG 61.754 63.158 0.00 0.00 0.00 4.35
2243 2326 3.056313 GCTGCTTCCCCAATGACGC 62.056 63.158 0.00 0.00 0.00 5.19
2244 2327 2.361104 TGCTTCCCCAATGACGCC 60.361 61.111 0.00 0.00 0.00 5.68
2245 2328 3.140814 GCTTCCCCAATGACGCCC 61.141 66.667 0.00 0.00 0.00 6.13
2246 2329 2.354729 CTTCCCCAATGACGCCCA 59.645 61.111 0.00 0.00 0.00 5.36
2247 2330 1.304052 CTTCCCCAATGACGCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
2248 2331 1.304052 TTCCCCAATGACGCCCAAG 60.304 57.895 0.00 0.00 0.00 3.61
2249 2332 3.451894 CCCCAATGACGCCCAAGC 61.452 66.667 0.00 0.00 0.00 4.01
2250 2333 3.451894 CCCAATGACGCCCAAGCC 61.452 66.667 0.00 0.00 34.57 4.35
2251 2334 2.361610 CCAATGACGCCCAAGCCT 60.362 61.111 0.00 0.00 34.57 4.58
2252 2335 2.703798 CCAATGACGCCCAAGCCTG 61.704 63.158 0.00 0.00 34.57 4.85
2253 2336 1.973281 CAATGACGCCCAAGCCTGT 60.973 57.895 0.00 0.00 34.57 4.00
2254 2337 0.676466 CAATGACGCCCAAGCCTGTA 60.676 55.000 0.00 0.00 34.57 2.74
2255 2338 0.037590 AATGACGCCCAAGCCTGTAA 59.962 50.000 0.00 0.00 34.57 2.41
2256 2339 0.392998 ATGACGCCCAAGCCTGTAAG 60.393 55.000 0.00 0.00 34.57 2.34
2257 2340 1.295423 GACGCCCAAGCCTGTAAGA 59.705 57.895 0.00 0.00 34.07 2.10
2258 2341 0.321298 GACGCCCAAGCCTGTAAGAA 60.321 55.000 0.00 0.00 34.07 2.52
2259 2342 0.109723 ACGCCCAAGCCTGTAAGAAA 59.890 50.000 0.00 0.00 34.07 2.52
2260 2343 1.243902 CGCCCAAGCCTGTAAGAAAA 58.756 50.000 0.00 0.00 34.07 2.29
2261 2344 1.818674 CGCCCAAGCCTGTAAGAAAAT 59.181 47.619 0.00 0.00 34.07 1.82
2262 2345 2.415893 CGCCCAAGCCTGTAAGAAAATG 60.416 50.000 0.00 0.00 34.07 2.32
2263 2346 2.562738 GCCCAAGCCTGTAAGAAAATGT 59.437 45.455 0.00 0.00 34.07 2.71
2264 2347 3.614870 GCCCAAGCCTGTAAGAAAATGTG 60.615 47.826 0.00 0.00 34.07 3.21
2265 2348 3.056607 CCCAAGCCTGTAAGAAAATGTGG 60.057 47.826 0.00 0.00 34.07 4.17
2266 2349 3.578688 CAAGCCTGTAAGAAAATGTGGC 58.421 45.455 0.00 0.00 39.19 5.01
2267 2350 2.875296 AGCCTGTAAGAAAATGTGGCA 58.125 42.857 0.00 0.00 41.12 4.92
2268 2351 3.434309 AGCCTGTAAGAAAATGTGGCAT 58.566 40.909 0.00 0.00 41.12 4.40
2269 2352 3.834231 AGCCTGTAAGAAAATGTGGCATT 59.166 39.130 0.00 0.00 41.12 3.56
2270 2353 4.284234 AGCCTGTAAGAAAATGTGGCATTT 59.716 37.500 0.00 1.68 41.12 2.32
2271 2354 4.389687 GCCTGTAAGAAAATGTGGCATTTG 59.610 41.667 7.71 0.00 38.79 2.32
2272 2355 5.782047 CCTGTAAGAAAATGTGGCATTTGA 58.218 37.500 7.71 0.00 34.07 2.69
2273 2356 6.222389 CCTGTAAGAAAATGTGGCATTTGAA 58.778 36.000 7.71 0.00 34.07 2.69
2274 2357 6.366877 CCTGTAAGAAAATGTGGCATTTGAAG 59.633 38.462 7.71 1.70 34.07 3.02
2275 2358 7.048629 TGTAAGAAAATGTGGCATTTGAAGA 57.951 32.000 7.71 0.00 0.00 2.87
2276 2359 7.147312 TGTAAGAAAATGTGGCATTTGAAGAG 58.853 34.615 7.71 0.00 0.00 2.85
2277 2360 5.143376 AGAAAATGTGGCATTTGAAGAGG 57.857 39.130 7.71 0.00 0.00 3.69
2278 2361 4.834496 AGAAAATGTGGCATTTGAAGAGGA 59.166 37.500 7.71 0.00 0.00 3.71
2279 2362 5.482878 AGAAAATGTGGCATTTGAAGAGGAT 59.517 36.000 7.71 0.00 0.00 3.24
2280 2363 6.664816 AGAAAATGTGGCATTTGAAGAGGATA 59.335 34.615 7.71 0.00 0.00 2.59
2281 2364 7.343833 AGAAAATGTGGCATTTGAAGAGGATAT 59.656 33.333 7.71 0.00 0.00 1.63
2282 2365 6.645790 AATGTGGCATTTGAAGAGGATATC 57.354 37.500 0.00 0.00 0.00 1.63
2283 2366 5.114764 TGTGGCATTTGAAGAGGATATCA 57.885 39.130 4.83 0.00 0.00 2.15
2284 2367 5.128205 TGTGGCATTTGAAGAGGATATCAG 58.872 41.667 4.83 0.00 0.00 2.90
2285 2368 4.023365 GTGGCATTTGAAGAGGATATCAGC 60.023 45.833 4.83 0.00 0.00 4.26
2286 2369 4.141321 TGGCATTTGAAGAGGATATCAGCT 60.141 41.667 4.83 0.00 0.00 4.24
2287 2370 4.215827 GGCATTTGAAGAGGATATCAGCTG 59.784 45.833 7.63 7.63 0.00 4.24
2288 2371 4.215827 GCATTTGAAGAGGATATCAGCTGG 59.784 45.833 15.13 0.00 0.00 4.85
2289 2372 4.428294 TTTGAAGAGGATATCAGCTGGG 57.572 45.455 15.13 0.00 0.00 4.45
2290 2373 3.051940 TGAAGAGGATATCAGCTGGGT 57.948 47.619 15.13 5.80 0.00 4.51
2291 2374 2.702478 TGAAGAGGATATCAGCTGGGTG 59.298 50.000 15.13 0.00 0.00 4.61
2292 2375 2.783379 AGAGGATATCAGCTGGGTGA 57.217 50.000 15.13 4.95 0.00 4.02
2293 2376 2.607499 AGAGGATATCAGCTGGGTGAG 58.393 52.381 15.13 0.00 0.00 3.51
2302 2385 3.488423 CTGGGTGAGCAGGGAACT 58.512 61.111 0.00 0.00 46.44 3.01
2303 2386 1.763770 CTGGGTGAGCAGGGAACTT 59.236 57.895 0.00 0.00 40.21 2.66
2304 2387 0.607489 CTGGGTGAGCAGGGAACTTG 60.607 60.000 0.00 0.00 40.21 3.16
2305 2388 1.352622 TGGGTGAGCAGGGAACTTGT 61.353 55.000 0.00 0.00 40.21 3.16
2306 2389 0.890996 GGGTGAGCAGGGAACTTGTG 60.891 60.000 0.00 0.00 40.21 3.33
2307 2390 0.179018 GGTGAGCAGGGAACTTGTGT 60.179 55.000 0.00 0.00 40.21 3.72
2308 2391 1.680338 GTGAGCAGGGAACTTGTGTT 58.320 50.000 0.00 0.00 40.21 3.32
2326 2409 8.878769 ACTTGTGTTCAATTGTAATTTTGTTCC 58.121 29.630 5.13 0.00 32.82 3.62
2327 2410 7.456684 TGTGTTCAATTGTAATTTTGTTCCG 57.543 32.000 5.13 0.00 0.00 4.30
2328 2411 7.036220 TGTGTTCAATTGTAATTTTGTTCCGT 58.964 30.769 5.13 0.00 0.00 4.69
2329 2412 8.188799 TGTGTTCAATTGTAATTTTGTTCCGTA 58.811 29.630 5.13 0.00 0.00 4.02
2330 2413 8.473796 GTGTTCAATTGTAATTTTGTTCCGTAC 58.526 33.333 5.13 0.00 0.00 3.67
2331 2414 7.648510 TGTTCAATTGTAATTTTGTTCCGTACC 59.351 33.333 5.13 0.00 0.00 3.34
2332 2415 7.273320 TCAATTGTAATTTTGTTCCGTACCA 57.727 32.000 5.13 0.00 0.00 3.25
2333 2416 7.140048 TCAATTGTAATTTTGTTCCGTACCAC 58.860 34.615 5.13 0.00 0.00 4.16
2334 2417 5.435820 TTGTAATTTTGTTCCGTACCACC 57.564 39.130 0.00 0.00 0.00 4.61
2335 2418 3.819902 TGTAATTTTGTTCCGTACCACCC 59.180 43.478 0.00 0.00 0.00 4.61
2336 2419 2.660670 ATTTTGTTCCGTACCACCCA 57.339 45.000 0.00 0.00 0.00 4.51
2337 2420 2.431954 TTTTGTTCCGTACCACCCAA 57.568 45.000 0.00 0.00 0.00 4.12
2338 2421 2.431954 TTTGTTCCGTACCACCCAAA 57.568 45.000 0.00 0.00 0.00 3.28
2339 2422 2.660670 TTGTTCCGTACCACCCAAAT 57.339 45.000 0.00 0.00 0.00 2.32
2340 2423 3.784511 TTGTTCCGTACCACCCAAATA 57.215 42.857 0.00 0.00 0.00 1.40
2341 2424 3.337694 TGTTCCGTACCACCCAAATAG 57.662 47.619 0.00 0.00 0.00 1.73
2342 2425 2.905085 TGTTCCGTACCACCCAAATAGA 59.095 45.455 0.00 0.00 0.00 1.98
2343 2426 3.264947 GTTCCGTACCACCCAAATAGAC 58.735 50.000 0.00 0.00 0.00 2.59
2344 2427 1.832998 TCCGTACCACCCAAATAGACC 59.167 52.381 0.00 0.00 0.00 3.85
2345 2428 1.555992 CCGTACCACCCAAATAGACCA 59.444 52.381 0.00 0.00 0.00 4.02
2346 2429 2.171870 CCGTACCACCCAAATAGACCAT 59.828 50.000 0.00 0.00 0.00 3.55
2347 2430 3.388676 CCGTACCACCCAAATAGACCATA 59.611 47.826 0.00 0.00 0.00 2.74
2348 2431 4.141665 CCGTACCACCCAAATAGACCATAA 60.142 45.833 0.00 0.00 0.00 1.90
2349 2432 4.812626 CGTACCACCCAAATAGACCATAAC 59.187 45.833 0.00 0.00 0.00 1.89
2350 2433 4.938575 ACCACCCAAATAGACCATAACA 57.061 40.909 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.445493 CAAGCTTTCAAAACACTTCAGAATTTT 58.555 29.630 0.00 0.00 0.00 1.82
417 428 3.113322 CGAAGAGAGAACACGTCAACAA 58.887 45.455 0.00 0.00 0.00 2.83
423 434 0.384309 TGCACGAAGAGAGAACACGT 59.616 50.000 0.00 0.00 37.68 4.49
424 435 1.388093 CATGCACGAAGAGAGAACACG 59.612 52.381 0.00 0.00 0.00 4.49
495 506 5.455872 TCCATTTTTGGGTGTTTGGTAGTA 58.544 37.500 0.00 0.00 0.00 1.82
520 550 7.068103 TGCATGAGGTTAAAACTTTTCTTCTCA 59.932 33.333 0.00 12.04 34.00 3.27
527 557 4.653801 AGGGTGCATGAGGTTAAAACTTTT 59.346 37.500 0.00 0.00 0.00 2.27
528 558 4.223144 AGGGTGCATGAGGTTAAAACTTT 58.777 39.130 0.00 0.00 0.00 2.66
531 561 2.492088 GGAGGGTGCATGAGGTTAAAAC 59.508 50.000 0.00 0.00 0.00 2.43
536 566 1.212935 GTATGGAGGGTGCATGAGGTT 59.787 52.381 0.00 0.00 29.08 3.50
538 568 0.839277 TGTATGGAGGGTGCATGAGG 59.161 55.000 0.00 0.00 29.08 3.86
555 585 1.623811 AGGGTGCGTTTGATAGAGTGT 59.376 47.619 0.00 0.00 0.00 3.55
563 593 1.957177 TGCATTTTAGGGTGCGTTTGA 59.043 42.857 0.00 0.00 44.11 2.69
569 599 1.266178 AAGGGTGCATTTTAGGGTGC 58.734 50.000 0.00 0.00 41.61 5.01
618 648 3.627395 TGTCCATATGACCACTTCACC 57.373 47.619 3.65 0.00 43.78 4.02
626 656 3.195661 GAGGAACGTTGTCCATATGACC 58.804 50.000 5.00 0.00 43.78 4.02
672 727 4.664677 AGCACCGCTCGTTTCGCT 62.665 61.111 0.00 0.00 30.62 4.93
788 844 0.179051 CATGCCCTTCTCTCCTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
800 857 0.630673 TATTGGGTTGCTCATGCCCT 59.369 50.000 6.86 0.00 42.77 5.19
806 863 2.643551 GCTAGCTTATTGGGTTGCTCA 58.356 47.619 7.70 0.00 37.02 4.26
1156 1219 4.467084 CGGCACCTGTACCCGCAT 62.467 66.667 0.00 0.00 35.14 4.73
1332 1401 4.903010 TAATTCGCCGGCCGCTCC 62.903 66.667 22.85 9.26 36.73 4.70
1399 1468 4.062991 ACGTACATCTTGACAAACCCTTC 58.937 43.478 0.00 0.00 0.00 3.46
1406 1476 2.103432 ACCCACACGTACATCTTGACAA 59.897 45.455 0.00 0.00 0.00 3.18
1582 1653 3.117436 TCCTCTAGTTTAGCTCCTCCTCC 60.117 52.174 0.00 0.00 0.00 4.30
1587 1658 4.230964 TCTCCTTCCTCTAGTTTAGCTCCT 59.769 45.833 0.00 0.00 0.00 3.69
1590 1661 6.670027 TCATTTCTCCTTCCTCTAGTTTAGCT 59.330 38.462 0.00 0.00 0.00 3.32
1690 1772 4.583871 ACAAGAAGTTTGAGCTATCCCAG 58.416 43.478 0.00 0.00 0.00 4.45
1729 1811 7.591006 ATGTACAAGTTGTTACACCTAATCG 57.409 36.000 14.90 0.00 0.00 3.34
1756 1838 5.870444 TCGTGTTGTTCTTCGATTGAAAAA 58.130 33.333 0.00 2.46 32.66 1.94
1757 1839 5.472320 TCGTGTTGTTCTTCGATTGAAAA 57.528 34.783 0.00 0.00 32.66 2.29
1793 1875 8.334632 TCTGCATTGTTGTATCATGTAATTACG 58.665 33.333 10.92 0.00 0.00 3.18
1845 1927 6.239036 GGCTCTTAACTTGTCTGAATTTTGGT 60.239 38.462 0.00 0.00 0.00 3.67
1847 1929 6.015940 AGGGCTCTTAACTTGTCTGAATTTTG 60.016 38.462 0.00 0.00 0.00 2.44
1848 1930 6.071320 AGGGCTCTTAACTTGTCTGAATTTT 58.929 36.000 0.00 0.00 0.00 1.82
1872 1954 0.392706 TGCGAGCAACTTGGAAGAGA 59.607 50.000 0.00 0.00 0.00 3.10
1945 2028 2.106683 CGTGCGTCTTCATTCCCCC 61.107 63.158 0.00 0.00 0.00 5.40
1946 2029 0.672401 TTCGTGCGTCTTCATTCCCC 60.672 55.000 0.00 0.00 0.00 4.81
1947 2030 0.721718 CTTCGTGCGTCTTCATTCCC 59.278 55.000 0.00 0.00 0.00 3.97
1948 2031 0.095417 GCTTCGTGCGTCTTCATTCC 59.905 55.000 0.00 0.00 0.00 3.01
1949 2032 3.569957 GCTTCGTGCGTCTTCATTC 57.430 52.632 0.00 0.00 0.00 2.67
1990 2073 2.757099 GTGGATGCTGCCTTGGGG 60.757 66.667 0.00 0.00 0.00 4.96
1991 2074 1.186917 TTTGTGGATGCTGCCTTGGG 61.187 55.000 0.00 0.00 0.00 4.12
1992 2075 0.037975 GTTTGTGGATGCTGCCTTGG 60.038 55.000 0.00 0.00 0.00 3.61
1993 2076 0.387622 CGTTTGTGGATGCTGCCTTG 60.388 55.000 0.00 0.00 0.00 3.61
1994 2077 1.526575 CCGTTTGTGGATGCTGCCTT 61.527 55.000 0.00 0.00 0.00 4.35
1995 2078 1.973281 CCGTTTGTGGATGCTGCCT 60.973 57.895 0.00 0.00 0.00 4.75
1996 2079 1.805428 AACCGTTTGTGGATGCTGCC 61.805 55.000 0.00 0.00 0.00 4.85
1997 2080 0.031994 AAACCGTTTGTGGATGCTGC 59.968 50.000 0.00 0.00 0.00 5.25
1998 2081 1.662876 CGAAACCGTTTGTGGATGCTG 60.663 52.381 0.00 0.00 0.00 4.41
1999 2082 0.591170 CGAAACCGTTTGTGGATGCT 59.409 50.000 0.00 0.00 0.00 3.79
2000 2083 0.589223 TCGAAACCGTTTGTGGATGC 59.411 50.000 0.00 0.00 0.00 3.91
2001 2084 3.040099 GTTTCGAAACCGTTTGTGGATG 58.960 45.455 27.01 0.00 32.82 3.51
2002 2085 2.946990 AGTTTCGAAACCGTTTGTGGAT 59.053 40.909 31.87 11.16 39.71 3.41
2003 2086 2.358015 AGTTTCGAAACCGTTTGTGGA 58.642 42.857 31.87 0.00 39.71 4.02
2004 2087 2.836479 AGTTTCGAAACCGTTTGTGG 57.164 45.000 31.87 0.00 39.71 4.17
2005 2088 4.649977 TGTAAGTTTCGAAACCGTTTGTG 58.350 39.130 31.87 0.00 39.71 3.33
2006 2089 4.943142 TGTAAGTTTCGAAACCGTTTGT 57.057 36.364 31.87 13.90 39.71 2.83
2007 2090 5.003684 GGTTTGTAAGTTTCGAAACCGTTTG 59.996 40.000 31.87 0.00 38.38 2.93
2008 2091 5.094812 GGTTTGTAAGTTTCGAAACCGTTT 58.905 37.500 31.87 23.13 38.38 3.60
2009 2092 4.155644 TGGTTTGTAAGTTTCGAAACCGTT 59.844 37.500 31.87 23.75 46.97 4.44
2010 2093 3.688673 TGGTTTGTAAGTTTCGAAACCGT 59.311 39.130 31.87 23.68 46.97 4.83
2011 2094 4.275838 TGGTTTGTAAGTTTCGAAACCG 57.724 40.909 31.87 0.00 46.97 4.44
2012 2095 6.947903 TTTTGGTTTGTAAGTTTCGAAACC 57.052 33.333 31.87 19.82 45.11 3.27
2024 2107 9.589111 GTGGAACTTCTTTTATTTTGGTTTGTA 57.411 29.630 0.00 0.00 0.00 2.41
2025 2108 8.097662 TGTGGAACTTCTTTTATTTTGGTTTGT 58.902 29.630 0.00 0.00 38.04 2.83
2026 2109 8.485976 TGTGGAACTTCTTTTATTTTGGTTTG 57.514 30.769 0.00 0.00 38.04 2.93
2027 2110 9.108284 CATGTGGAACTTCTTTTATTTTGGTTT 57.892 29.630 0.00 0.00 38.04 3.27
2028 2111 7.226523 GCATGTGGAACTTCTTTTATTTTGGTT 59.773 33.333 0.00 0.00 38.04 3.67
2029 2112 6.705825 GCATGTGGAACTTCTTTTATTTTGGT 59.294 34.615 0.00 0.00 38.04 3.67
2030 2113 6.128849 CGCATGTGGAACTTCTTTTATTTTGG 60.129 38.462 0.00 0.00 38.04 3.28
2031 2114 6.616260 GCGCATGTGGAACTTCTTTTATTTTG 60.616 38.462 8.62 0.00 38.04 2.44
2032 2115 5.405269 GCGCATGTGGAACTTCTTTTATTTT 59.595 36.000 8.62 0.00 38.04 1.82
2033 2116 4.923281 GCGCATGTGGAACTTCTTTTATTT 59.077 37.500 8.62 0.00 38.04 1.40
2034 2117 4.022416 TGCGCATGTGGAACTTCTTTTATT 60.022 37.500 5.66 0.00 38.04 1.40
2035 2118 3.505680 TGCGCATGTGGAACTTCTTTTAT 59.494 39.130 5.66 0.00 38.04 1.40
2036 2119 2.881513 TGCGCATGTGGAACTTCTTTTA 59.118 40.909 5.66 0.00 38.04 1.52
2037 2120 1.680735 TGCGCATGTGGAACTTCTTTT 59.319 42.857 5.66 0.00 38.04 2.27
2038 2121 1.267806 CTGCGCATGTGGAACTTCTTT 59.732 47.619 12.24 0.00 38.04 2.52
2039 2122 0.877071 CTGCGCATGTGGAACTTCTT 59.123 50.000 12.24 0.00 38.04 2.52
2040 2123 1.580845 GCTGCGCATGTGGAACTTCT 61.581 55.000 12.24 0.00 38.04 2.85
2041 2124 1.154150 GCTGCGCATGTGGAACTTC 60.154 57.895 12.24 0.00 38.04 3.01
2042 2125 2.956987 GCTGCGCATGTGGAACTT 59.043 55.556 12.24 0.00 38.04 2.66
2043 2126 3.425713 CGCTGCGCATGTGGAACT 61.426 61.111 12.24 0.00 38.04 3.01
2044 2127 4.465512 CCGCTGCGCATGTGGAAC 62.466 66.667 25.68 0.00 37.26 3.62
2059 2142 4.799824 CTTTGCATTGCCGGGCCG 62.800 66.667 21.46 21.46 0.00 6.13
2060 2143 3.238755 AACTTTGCATTGCCGGGCC 62.239 57.895 17.97 0.00 0.00 5.80
2061 2144 2.028733 CAACTTTGCATTGCCGGGC 61.029 57.895 13.32 13.32 0.00 6.13
2062 2145 4.265282 CAACTTTGCATTGCCGGG 57.735 55.556 2.18 0.00 0.00 5.73
2072 2155 4.488126 TTGCTAGCTAGTTGCAACTTTG 57.512 40.909 35.20 26.89 45.94 2.77
2073 2156 5.712152 ATTTGCTAGCTAGTTGCAACTTT 57.288 34.783 35.20 22.68 44.81 2.66
2074 2157 8.398665 GTTATATTTGCTAGCTAGTTGCAACTT 58.601 33.333 35.20 20.91 44.81 2.66
2075 2158 7.552687 TGTTATATTTGCTAGCTAGTTGCAACT 59.447 33.333 32.97 32.97 44.81 3.16
2076 2159 7.693952 TGTTATATTTGCTAGCTAGTTGCAAC 58.306 34.615 22.17 22.17 44.81 4.17
2077 2160 7.857734 TGTTATATTTGCTAGCTAGTTGCAA 57.142 32.000 21.62 17.14 45.94 4.08
2078 2161 8.988934 GTATGTTATATTTGCTAGCTAGTTGCA 58.011 33.333 21.62 12.05 45.94 4.08
2079 2162 8.988934 TGTATGTTATATTTGCTAGCTAGTTGC 58.011 33.333 21.62 9.45 43.29 4.17
2092 2175 9.772973 TGCCGAGAGTTTATGTATGTTATATTT 57.227 29.630 0.00 0.00 0.00 1.40
2093 2176 9.772973 TTGCCGAGAGTTTATGTATGTTATATT 57.227 29.630 0.00 0.00 0.00 1.28
2094 2177 9.772973 TTTGCCGAGAGTTTATGTATGTTATAT 57.227 29.630 0.00 0.00 0.00 0.86
2095 2178 9.772973 ATTTGCCGAGAGTTTATGTATGTTATA 57.227 29.630 0.00 0.00 0.00 0.98
2096 2179 8.677148 ATTTGCCGAGAGTTTATGTATGTTAT 57.323 30.769 0.00 0.00 0.00 1.89
2097 2180 7.766738 TGATTTGCCGAGAGTTTATGTATGTTA 59.233 33.333 0.00 0.00 0.00 2.41
2098 2181 6.597672 TGATTTGCCGAGAGTTTATGTATGTT 59.402 34.615 0.00 0.00 0.00 2.71
2099 2182 6.112734 TGATTTGCCGAGAGTTTATGTATGT 58.887 36.000 0.00 0.00 0.00 2.29
2100 2183 6.603237 TGATTTGCCGAGAGTTTATGTATG 57.397 37.500 0.00 0.00 0.00 2.39
2101 2184 8.902540 TTATGATTTGCCGAGAGTTTATGTAT 57.097 30.769 0.00 0.00 0.00 2.29
2102 2185 7.042051 GCTTATGATTTGCCGAGAGTTTATGTA 60.042 37.037 0.00 0.00 0.00 2.29
2103 2186 6.238484 GCTTATGATTTGCCGAGAGTTTATGT 60.238 38.462 0.00 0.00 0.00 2.29
2104 2187 6.017605 AGCTTATGATTTGCCGAGAGTTTATG 60.018 38.462 0.00 0.00 0.00 1.90
2105 2188 6.058183 AGCTTATGATTTGCCGAGAGTTTAT 58.942 36.000 0.00 0.00 0.00 1.40
2106 2189 5.428253 AGCTTATGATTTGCCGAGAGTTTA 58.572 37.500 0.00 0.00 0.00 2.01
2107 2190 4.265073 AGCTTATGATTTGCCGAGAGTTT 58.735 39.130 0.00 0.00 0.00 2.66
2108 2191 3.878778 AGCTTATGATTTGCCGAGAGTT 58.121 40.909 0.00 0.00 0.00 3.01
2109 2192 3.550437 AGCTTATGATTTGCCGAGAGT 57.450 42.857 0.00 0.00 0.00 3.24
2110 2193 5.053145 AGTTAGCTTATGATTTGCCGAGAG 58.947 41.667 0.00 0.00 0.00 3.20
2111 2194 5.023533 AGTTAGCTTATGATTTGCCGAGA 57.976 39.130 0.00 0.00 0.00 4.04
2112 2195 4.811024 TGAGTTAGCTTATGATTTGCCGAG 59.189 41.667 0.00 0.00 0.00 4.63
2113 2196 4.765273 TGAGTTAGCTTATGATTTGCCGA 58.235 39.130 0.00 0.00 0.00 5.54
2114 2197 5.484173 TTGAGTTAGCTTATGATTTGCCG 57.516 39.130 0.00 0.00 0.00 5.69
2115 2198 7.486232 GTCTTTTGAGTTAGCTTATGATTTGCC 59.514 37.037 0.00 0.00 0.00 4.52
2116 2199 8.239998 AGTCTTTTGAGTTAGCTTATGATTTGC 58.760 33.333 0.00 0.00 0.00 3.68
2117 2200 9.766277 GAGTCTTTTGAGTTAGCTTATGATTTG 57.234 33.333 0.00 0.00 31.08 2.32
2118 2201 9.507329 TGAGTCTTTTGAGTTAGCTTATGATTT 57.493 29.630 0.00 0.00 31.08 2.17
2119 2202 9.507329 TTGAGTCTTTTGAGTTAGCTTATGATT 57.493 29.630 0.00 0.00 31.08 2.57
2120 2203 9.160496 CTTGAGTCTTTTGAGTTAGCTTATGAT 57.840 33.333 0.00 0.00 31.08 2.45
2121 2204 7.118390 GCTTGAGTCTTTTGAGTTAGCTTATGA 59.882 37.037 0.00 0.00 37.12 2.15
2122 2205 7.118971 AGCTTGAGTCTTTTGAGTTAGCTTATG 59.881 37.037 0.00 0.00 42.36 1.90
2123 2206 7.164803 AGCTTGAGTCTTTTGAGTTAGCTTAT 58.835 34.615 0.00 0.00 42.36 1.73
2124 2207 6.525629 AGCTTGAGTCTTTTGAGTTAGCTTA 58.474 36.000 0.00 0.00 42.36 3.09
2125 2208 5.372373 AGCTTGAGTCTTTTGAGTTAGCTT 58.628 37.500 0.00 0.00 42.36 3.74
2126 2209 4.967036 AGCTTGAGTCTTTTGAGTTAGCT 58.033 39.130 0.00 0.00 41.30 3.32
2127 2210 5.447573 CAAGCTTGAGTCTTTTGAGTTAGC 58.552 41.667 22.31 0.00 38.75 3.09
2128 2211 5.008019 TGCAAGCTTGAGTCTTTTGAGTTAG 59.992 40.000 30.39 0.00 31.08 2.34
2129 2212 4.881273 TGCAAGCTTGAGTCTTTTGAGTTA 59.119 37.500 30.39 0.00 31.08 2.24
2130 2213 3.696051 TGCAAGCTTGAGTCTTTTGAGTT 59.304 39.130 30.39 0.00 31.08 3.01
2131 2214 3.065925 GTGCAAGCTTGAGTCTTTTGAGT 59.934 43.478 30.39 0.00 34.21 3.41
2132 2215 3.314635 AGTGCAAGCTTGAGTCTTTTGAG 59.685 43.478 30.39 0.00 0.00 3.02
2133 2216 3.282021 AGTGCAAGCTTGAGTCTTTTGA 58.718 40.909 30.39 0.00 0.00 2.69
2134 2217 3.549625 GGAGTGCAAGCTTGAGTCTTTTG 60.550 47.826 30.39 0.65 0.00 2.44
2135 2218 2.620585 GGAGTGCAAGCTTGAGTCTTTT 59.379 45.455 30.39 7.14 0.00 2.27
2136 2219 2.158696 AGGAGTGCAAGCTTGAGTCTTT 60.159 45.455 30.39 14.76 0.00 2.52
2137 2220 1.419387 AGGAGTGCAAGCTTGAGTCTT 59.581 47.619 30.39 18.40 0.00 3.01
2138 2221 1.055040 AGGAGTGCAAGCTTGAGTCT 58.945 50.000 30.39 21.41 0.00 3.24
2139 2222 1.534595 CAAGGAGTGCAAGCTTGAGTC 59.465 52.381 30.39 22.84 0.00 3.36
2140 2223 1.133976 ACAAGGAGTGCAAGCTTGAGT 60.134 47.619 30.39 16.79 0.00 3.41
2141 2224 1.602311 ACAAGGAGTGCAAGCTTGAG 58.398 50.000 30.39 4.87 0.00 3.02
2142 2225 1.677576 CAACAAGGAGTGCAAGCTTGA 59.322 47.619 30.39 12.25 0.00 3.02
2143 2226 1.866880 GCAACAAGGAGTGCAAGCTTG 60.867 52.381 22.44 22.44 0.00 4.01
2144 2227 0.386838 GCAACAAGGAGTGCAAGCTT 59.613 50.000 0.00 0.00 0.00 3.74
2145 2228 1.458639 GGCAACAAGGAGTGCAAGCT 61.459 55.000 0.00 0.00 0.00 3.74
2146 2229 1.006922 GGCAACAAGGAGTGCAAGC 60.007 57.895 0.00 0.00 0.00 4.01
2147 2230 0.595095 GAGGCAACAAGGAGTGCAAG 59.405 55.000 0.00 0.00 41.41 4.01
2148 2231 1.165907 CGAGGCAACAAGGAGTGCAA 61.166 55.000 0.00 0.00 41.41 4.08
2149 2232 1.597854 CGAGGCAACAAGGAGTGCA 60.598 57.895 0.00 0.00 41.41 4.57
2150 2233 2.970974 GCGAGGCAACAAGGAGTGC 61.971 63.158 0.00 0.00 41.41 4.40
2151 2234 0.886490 AAGCGAGGCAACAAGGAGTG 60.886 55.000 0.00 0.00 41.41 3.51
2152 2235 0.179018 AAAGCGAGGCAACAAGGAGT 60.179 50.000 0.00 0.00 41.41 3.85
2153 2236 0.519077 GAAAGCGAGGCAACAAGGAG 59.481 55.000 0.00 0.00 41.41 3.69
2154 2237 0.179032 TGAAAGCGAGGCAACAAGGA 60.179 50.000 0.00 0.00 41.41 3.36
2155 2238 0.040067 GTGAAAGCGAGGCAACAAGG 60.040 55.000 0.00 0.00 41.41 3.61
2156 2239 0.662619 TGTGAAAGCGAGGCAACAAG 59.337 50.000 0.00 0.00 41.41 3.16
2157 2240 1.098869 TTGTGAAAGCGAGGCAACAA 58.901 45.000 0.00 0.00 41.41 2.83
2158 2241 1.001487 CATTGTGAAAGCGAGGCAACA 60.001 47.619 0.00 0.00 41.41 3.33
2159 2242 1.689959 CATTGTGAAAGCGAGGCAAC 58.310 50.000 0.00 0.00 0.00 4.17
2160 2243 0.039256 GCATTGTGAAAGCGAGGCAA 60.039 50.000 0.00 0.00 30.64 4.52
2161 2244 1.171549 TGCATTGTGAAAGCGAGGCA 61.172 50.000 0.00 0.00 37.24 4.75
2162 2245 0.730494 GTGCATTGTGAAAGCGAGGC 60.730 55.000 0.00 0.00 0.00 4.70
2163 2246 0.592637 TGTGCATTGTGAAAGCGAGG 59.407 50.000 0.00 0.00 0.00 4.63
2164 2247 1.959747 CTGTGCATTGTGAAAGCGAG 58.040 50.000 0.00 0.00 0.00 5.03
2165 2248 0.040157 GCTGTGCATTGTGAAAGCGA 60.040 50.000 0.00 0.00 0.00 4.93
2166 2249 0.039798 AGCTGTGCATTGTGAAAGCG 60.040 50.000 0.00 0.00 35.82 4.68
2167 2250 1.790623 CAAGCTGTGCATTGTGAAAGC 59.209 47.619 0.00 0.00 0.00 3.51
2168 2251 3.358707 TCAAGCTGTGCATTGTGAAAG 57.641 42.857 0.00 0.00 0.00 2.62
2169 2252 3.570975 AGATCAAGCTGTGCATTGTGAAA 59.429 39.130 0.00 0.00 0.00 2.69
2170 2253 3.057806 CAGATCAAGCTGTGCATTGTGAA 60.058 43.478 0.00 0.00 0.00 3.18
2171 2254 2.486592 CAGATCAAGCTGTGCATTGTGA 59.513 45.455 0.00 0.00 0.00 3.58
2172 2255 2.863739 CAGATCAAGCTGTGCATTGTG 58.136 47.619 0.00 0.00 0.00 3.33
2173 2256 1.201647 GCAGATCAAGCTGTGCATTGT 59.798 47.619 0.00 0.00 38.17 2.71
2174 2257 1.472878 AGCAGATCAAGCTGTGCATTG 59.527 47.619 11.36 0.00 41.61 2.82
2175 2258 1.743958 GAGCAGATCAAGCTGTGCATT 59.256 47.619 16.22 0.00 43.58 3.56
2176 2259 1.380524 GAGCAGATCAAGCTGTGCAT 58.619 50.000 16.22 0.00 43.58 3.96
2177 2260 0.675837 GGAGCAGATCAAGCTGTGCA 60.676 55.000 16.22 0.00 43.58 4.57
2178 2261 0.675837 TGGAGCAGATCAAGCTGTGC 60.676 55.000 16.22 5.88 43.58 4.57
2179 2262 1.671328 CATGGAGCAGATCAAGCTGTG 59.329 52.381 16.22 9.07 43.58 3.66
2180 2263 1.558294 TCATGGAGCAGATCAAGCTGT 59.442 47.619 16.22 1.54 43.58 4.40
2181 2264 2.327200 TCATGGAGCAGATCAAGCTG 57.673 50.000 16.22 4.53 43.58 4.24
2182 2265 2.706723 AGATCATGGAGCAGATCAAGCT 59.293 45.455 11.89 11.89 46.82 3.74
2183 2266 3.068560 GAGATCATGGAGCAGATCAAGC 58.931 50.000 0.00 0.00 42.36 4.01
2184 2267 3.005578 TCGAGATCATGGAGCAGATCAAG 59.994 47.826 0.00 0.00 42.36 3.02
2185 2268 2.961062 TCGAGATCATGGAGCAGATCAA 59.039 45.455 0.00 0.00 42.36 2.57
2186 2269 2.590821 TCGAGATCATGGAGCAGATCA 58.409 47.619 0.00 0.00 42.36 2.92
2187 2270 3.193056 TGATCGAGATCATGGAGCAGATC 59.807 47.826 11.37 10.73 42.42 2.75
2188 2271 3.163467 TGATCGAGATCATGGAGCAGAT 58.837 45.455 11.37 0.00 42.42 2.90
2189 2272 2.590821 TGATCGAGATCATGGAGCAGA 58.409 47.619 11.37 0.00 42.42 4.26
2199 2282 2.161410 CGAGGACCTCATGATCGAGATC 59.839 54.545 21.49 6.16 34.79 2.75
2200 2283 2.158559 CGAGGACCTCATGATCGAGAT 58.841 52.381 21.49 0.00 34.79 2.75
2201 2284 1.134068 ACGAGGACCTCATGATCGAGA 60.134 52.381 21.49 0.00 37.16 4.04
2202 2285 1.265635 GACGAGGACCTCATGATCGAG 59.734 57.143 21.49 4.87 37.16 4.04
2203 2286 1.309950 GACGAGGACCTCATGATCGA 58.690 55.000 21.49 0.00 37.16 3.59
2204 2287 1.025041 TGACGAGGACCTCATGATCG 58.975 55.000 21.49 12.80 39.22 3.69
2205 2288 1.268794 CGTGACGAGGACCTCATGATC 60.269 57.143 21.49 12.52 0.00 2.92
2206 2289 0.741326 CGTGACGAGGACCTCATGAT 59.259 55.000 21.49 3.36 0.00 2.45
2207 2290 1.934220 GCGTGACGAGGACCTCATGA 61.934 60.000 21.49 0.00 0.00 3.07
2208 2291 1.517257 GCGTGACGAGGACCTCATG 60.517 63.158 21.49 9.40 0.00 3.07
2209 2292 1.679305 AGCGTGACGAGGACCTCAT 60.679 57.895 21.49 5.94 0.00 2.90
2210 2293 2.282251 AGCGTGACGAGGACCTCA 60.282 61.111 21.49 0.00 0.00 3.86
2211 2294 2.179517 CAGCGTGACGAGGACCTC 59.820 66.667 10.10 11.87 0.00 3.85
2212 2295 4.057428 GCAGCGTGACGAGGACCT 62.057 66.667 10.10 0.00 0.00 3.85
2213 2296 3.575351 AAGCAGCGTGACGAGGACC 62.575 63.158 10.10 0.00 0.00 4.46
2214 2297 2.049063 AAGCAGCGTGACGAGGAC 60.049 61.111 10.10 0.00 0.00 3.85
2215 2298 2.258591 GAAGCAGCGTGACGAGGA 59.741 61.111 10.10 0.00 0.00 3.71
2216 2299 2.811317 GGAAGCAGCGTGACGAGG 60.811 66.667 10.10 0.00 0.00 4.63
2217 2300 2.811317 GGGAAGCAGCGTGACGAG 60.811 66.667 10.10 0.47 0.00 4.18
2218 2301 4.373116 GGGGAAGCAGCGTGACGA 62.373 66.667 10.10 0.00 0.00 4.20
2219 2302 4.680237 TGGGGAAGCAGCGTGACG 62.680 66.667 0.00 0.00 0.00 4.35
2220 2303 1.675641 ATTGGGGAAGCAGCGTGAC 60.676 57.895 0.00 0.00 0.00 3.67
2221 2304 1.675310 CATTGGGGAAGCAGCGTGA 60.675 57.895 0.00 0.00 0.00 4.35
2222 2305 1.675310 TCATTGGGGAAGCAGCGTG 60.675 57.895 0.00 0.00 0.00 5.34
2223 2306 1.675641 GTCATTGGGGAAGCAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
2224 2307 2.753966 CGTCATTGGGGAAGCAGCG 61.754 63.158 0.00 0.00 0.00 5.18
2225 2308 3.056313 GCGTCATTGGGGAAGCAGC 62.056 63.158 0.00 0.00 41.15 5.25
2226 2309 2.409870 GGCGTCATTGGGGAAGCAG 61.410 63.158 0.00 0.00 42.90 4.24
2227 2310 2.361104 GGCGTCATTGGGGAAGCA 60.361 61.111 0.00 0.00 42.90 3.91
2228 2311 3.140814 GGGCGTCATTGGGGAAGC 61.141 66.667 0.00 0.00 40.83 3.86
2229 2312 1.304052 TTGGGCGTCATTGGGGAAG 60.304 57.895 0.00 0.00 0.00 3.46
2230 2313 1.304052 CTTGGGCGTCATTGGGGAA 60.304 57.895 0.00 0.00 0.00 3.97
2231 2314 2.354729 CTTGGGCGTCATTGGGGA 59.645 61.111 0.00 0.00 0.00 4.81
2232 2315 3.451894 GCTTGGGCGTCATTGGGG 61.452 66.667 0.00 0.00 0.00 4.96
2233 2316 3.451894 GGCTTGGGCGTCATTGGG 61.452 66.667 0.00 0.00 39.81 4.12
2234 2317 2.361610 AGGCTTGGGCGTCATTGG 60.362 61.111 0.00 0.00 39.81 3.16
2235 2318 0.676466 TACAGGCTTGGGCGTCATTG 60.676 55.000 0.00 0.00 39.81 2.82
2236 2319 0.037590 TTACAGGCTTGGGCGTCATT 59.962 50.000 0.00 0.00 39.81 2.57
2237 2320 0.392998 CTTACAGGCTTGGGCGTCAT 60.393 55.000 0.00 0.00 39.81 3.06
2238 2321 1.003839 CTTACAGGCTTGGGCGTCA 60.004 57.895 0.00 0.00 39.81 4.35
2239 2322 0.321298 TTCTTACAGGCTTGGGCGTC 60.321 55.000 0.00 0.00 39.81 5.19
2240 2323 0.109723 TTTCTTACAGGCTTGGGCGT 59.890 50.000 0.00 0.00 39.81 5.68
2241 2324 1.243902 TTTTCTTACAGGCTTGGGCG 58.756 50.000 0.00 0.00 39.81 6.13
2242 2325 2.562738 ACATTTTCTTACAGGCTTGGGC 59.437 45.455 0.00 0.00 37.82 5.36
2243 2326 3.056607 CCACATTTTCTTACAGGCTTGGG 60.057 47.826 0.00 0.00 0.00 4.12
2244 2327 3.614870 GCCACATTTTCTTACAGGCTTGG 60.615 47.826 0.00 0.00 37.67 3.61
2245 2328 3.005684 TGCCACATTTTCTTACAGGCTTG 59.994 43.478 0.00 0.00 41.12 4.01
2246 2329 3.230134 TGCCACATTTTCTTACAGGCTT 58.770 40.909 0.00 0.00 41.12 4.35
2247 2330 2.875296 TGCCACATTTTCTTACAGGCT 58.125 42.857 0.00 0.00 41.12 4.58
2248 2331 3.874392 ATGCCACATTTTCTTACAGGC 57.126 42.857 0.00 0.00 40.93 4.85
2249 2332 5.782047 TCAAATGCCACATTTTCTTACAGG 58.218 37.500 2.88 0.00 0.00 4.00
2250 2333 7.147312 TCTTCAAATGCCACATTTTCTTACAG 58.853 34.615 2.88 0.00 0.00 2.74
2251 2334 7.048629 TCTTCAAATGCCACATTTTCTTACA 57.951 32.000 2.88 0.00 0.00 2.41
2252 2335 6.587608 CCTCTTCAAATGCCACATTTTCTTAC 59.412 38.462 2.88 0.00 0.00 2.34
2253 2336 6.493115 TCCTCTTCAAATGCCACATTTTCTTA 59.507 34.615 2.88 0.00 0.00 2.10
2254 2337 5.305128 TCCTCTTCAAATGCCACATTTTCTT 59.695 36.000 2.88 0.00 0.00 2.52
2255 2338 4.834496 TCCTCTTCAAATGCCACATTTTCT 59.166 37.500 2.88 0.00 0.00 2.52
2256 2339 5.138125 TCCTCTTCAAATGCCACATTTTC 57.862 39.130 2.88 0.00 0.00 2.29
2257 2340 5.750352 ATCCTCTTCAAATGCCACATTTT 57.250 34.783 2.88 0.00 0.00 1.82
2258 2341 6.608405 TGATATCCTCTTCAAATGCCACATTT 59.392 34.615 0.00 0.00 0.00 2.32
2259 2342 6.131264 TGATATCCTCTTCAAATGCCACATT 58.869 36.000 0.00 0.00 0.00 2.71
2260 2343 5.698104 TGATATCCTCTTCAAATGCCACAT 58.302 37.500 0.00 0.00 0.00 3.21
2261 2344 5.114764 TGATATCCTCTTCAAATGCCACA 57.885 39.130 0.00 0.00 0.00 4.17
2262 2345 4.023365 GCTGATATCCTCTTCAAATGCCAC 60.023 45.833 0.00 0.00 0.00 5.01
2263 2346 4.139786 GCTGATATCCTCTTCAAATGCCA 58.860 43.478 0.00 0.00 0.00 4.92
2264 2347 4.215827 CAGCTGATATCCTCTTCAAATGCC 59.784 45.833 8.42 0.00 0.00 4.40
2265 2348 4.215827 CCAGCTGATATCCTCTTCAAATGC 59.784 45.833 17.39 0.00 0.00 3.56
2266 2349 4.760715 CCCAGCTGATATCCTCTTCAAATG 59.239 45.833 17.39 0.00 0.00 2.32
2267 2350 4.414846 ACCCAGCTGATATCCTCTTCAAAT 59.585 41.667 17.39 0.00 0.00 2.32
2268 2351 3.782523 ACCCAGCTGATATCCTCTTCAAA 59.217 43.478 17.39 0.00 0.00 2.69
2269 2352 3.135348 CACCCAGCTGATATCCTCTTCAA 59.865 47.826 17.39 0.00 0.00 2.69
2270 2353 2.702478 CACCCAGCTGATATCCTCTTCA 59.298 50.000 17.39 0.00 0.00 3.02
2271 2354 2.968574 TCACCCAGCTGATATCCTCTTC 59.031 50.000 17.39 0.00 0.00 2.87
2272 2355 2.971330 CTCACCCAGCTGATATCCTCTT 59.029 50.000 17.39 0.00 0.00 2.85
2273 2356 2.607499 CTCACCCAGCTGATATCCTCT 58.393 52.381 17.39 0.00 0.00 3.69
2274 2357 1.001860 GCTCACCCAGCTGATATCCTC 59.998 57.143 17.39 0.00 45.83 3.71
2275 2358 1.055040 GCTCACCCAGCTGATATCCT 58.945 55.000 17.39 0.00 45.83 3.24
2276 2359 3.621953 GCTCACCCAGCTGATATCC 57.378 57.895 17.39 0.00 45.83 2.59
2285 2368 0.607489 CAAGTTCCCTGCTCACCCAG 60.607 60.000 0.00 0.00 0.00 4.45
2286 2369 1.352622 ACAAGTTCCCTGCTCACCCA 61.353 55.000 0.00 0.00 0.00 4.51
2287 2370 0.890996 CACAAGTTCCCTGCTCACCC 60.891 60.000 0.00 0.00 0.00 4.61
2288 2371 0.179018 ACACAAGTTCCCTGCTCACC 60.179 55.000 0.00 0.00 0.00 4.02
2289 2372 1.604278 GAACACAAGTTCCCTGCTCAC 59.396 52.381 0.00 0.00 46.68 3.51
2290 2373 1.967319 GAACACAAGTTCCCTGCTCA 58.033 50.000 0.00 0.00 46.68 4.26
2300 2383 8.878769 GGAACAAAATTACAATTGAACACAAGT 58.121 29.630 13.59 0.40 0.00 3.16
2301 2384 8.055402 CGGAACAAAATTACAATTGAACACAAG 58.945 33.333 13.59 0.00 0.00 3.16
2302 2385 7.545965 ACGGAACAAAATTACAATTGAACACAA 59.454 29.630 13.59 0.00 0.00 3.33
2303 2386 7.036220 ACGGAACAAAATTACAATTGAACACA 58.964 30.769 13.59 0.00 0.00 3.72
2304 2387 7.458038 ACGGAACAAAATTACAATTGAACAC 57.542 32.000 13.59 0.00 0.00 3.32
2305 2388 7.648510 GGTACGGAACAAAATTACAATTGAACA 59.351 33.333 13.59 0.00 0.00 3.18
2306 2389 7.648510 TGGTACGGAACAAAATTACAATTGAAC 59.351 33.333 13.59 0.00 0.00 3.18
2307 2390 7.648510 GTGGTACGGAACAAAATTACAATTGAA 59.351 33.333 13.59 2.61 0.00 2.69
2308 2391 7.140048 GTGGTACGGAACAAAATTACAATTGA 58.860 34.615 13.59 0.00 0.00 2.57
2309 2392 6.363896 GGTGGTACGGAACAAAATTACAATTG 59.636 38.462 3.24 3.24 0.00 2.32
2310 2393 6.448852 GGTGGTACGGAACAAAATTACAATT 58.551 36.000 0.00 0.00 0.00 2.32
2311 2394 5.047872 GGGTGGTACGGAACAAAATTACAAT 60.048 40.000 0.00 0.00 0.00 2.71
2312 2395 4.277921 GGGTGGTACGGAACAAAATTACAA 59.722 41.667 0.00 0.00 0.00 2.41
2313 2396 3.819902 GGGTGGTACGGAACAAAATTACA 59.180 43.478 0.00 0.00 0.00 2.41
2314 2397 3.819902 TGGGTGGTACGGAACAAAATTAC 59.180 43.478 0.00 0.00 0.00 1.89
2315 2398 4.096190 TGGGTGGTACGGAACAAAATTA 57.904 40.909 0.00 0.00 0.00 1.40
2316 2399 2.946785 TGGGTGGTACGGAACAAAATT 58.053 42.857 0.00 0.00 0.00 1.82
2317 2400 2.660670 TGGGTGGTACGGAACAAAAT 57.339 45.000 0.00 0.00 0.00 1.82
2318 2401 2.431954 TTGGGTGGTACGGAACAAAA 57.568 45.000 0.00 0.00 0.00 2.44
2319 2402 2.431954 TTTGGGTGGTACGGAACAAA 57.568 45.000 0.00 0.00 0.00 2.83
2320 2403 2.660670 ATTTGGGTGGTACGGAACAA 57.339 45.000 0.00 0.00 0.00 2.83
2321 2404 2.905085 TCTATTTGGGTGGTACGGAACA 59.095 45.455 0.00 0.00 0.00 3.18
2322 2405 3.264947 GTCTATTTGGGTGGTACGGAAC 58.735 50.000 0.00 0.00 0.00 3.62
2323 2406 2.236893 GGTCTATTTGGGTGGTACGGAA 59.763 50.000 0.00 0.00 0.00 4.30
2324 2407 1.832998 GGTCTATTTGGGTGGTACGGA 59.167 52.381 0.00 0.00 0.00 4.69
2325 2408 1.555992 TGGTCTATTTGGGTGGTACGG 59.444 52.381 0.00 0.00 0.00 4.02
2326 2409 3.553828 ATGGTCTATTTGGGTGGTACG 57.446 47.619 0.00 0.00 0.00 3.67
2327 2410 5.747342 TGTTATGGTCTATTTGGGTGGTAC 58.253 41.667 0.00 0.00 0.00 3.34
2329 2412 4.938575 TGTTATGGTCTATTTGGGTGGT 57.061 40.909 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.