Multiple sequence alignment - TraesCS1B01G263900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G263900 chr1B 100.000 4537 0 0 1 4537 464485006 464480470 0.000000e+00 8379.0
1 TraesCS1B01G263900 chr1B 85.404 644 73 9 3915 4537 464151131 464150488 0.000000e+00 649.0
2 TraesCS1B01G263900 chr1D 95.030 1831 67 10 1453 3261 345713058 345714886 0.000000e+00 2856.0
3 TraesCS1B01G263900 chr1D 94.828 1160 47 5 3383 4537 345714883 345716034 0.000000e+00 1797.0
4 TraesCS1B01G263900 chr1D 84.458 637 81 11 3915 4534 345721399 345722034 3.000000e-171 612.0
5 TraesCS1B01G263900 chr1D 97.248 327 9 0 994 1320 345712566 345712892 5.130000e-154 555.0
6 TraesCS1B01G263900 chr1D 87.638 453 12 18 511 933 345711845 345712283 1.900000e-133 486.0
7 TraesCS1B01G263900 chr1A 94.121 1837 78 15 1453 3261 445915487 445917321 0.000000e+00 2767.0
8 TraesCS1B01G263900 chr1A 94.963 675 31 1 3863 4534 445917749 445918423 0.000000e+00 1055.0
9 TraesCS1B01G263900 chr1A 87.011 793 50 26 535 1320 445914615 445915361 0.000000e+00 845.0
10 TraesCS1B01G263900 chr1A 98.383 433 7 0 3383 3815 445917318 445917750 0.000000e+00 761.0
11 TraesCS1B01G263900 chr1A 88.377 499 43 12 1 495 19448257 19448744 1.820000e-163 586.0
12 TraesCS1B01G263900 chr1A 88.153 498 45 11 1 495 19365954 19366440 8.460000e-162 580.0
13 TraesCS1B01G263900 chr1A 88.153 498 45 10 1 495 19446751 19447237 8.460000e-162 580.0
14 TraesCS1B01G263900 chr1A 83.077 650 80 14 3915 4536 445934595 445935242 8.520000e-157 564.0
15 TraesCS1B01G263900 chr1A 96.970 33 1 0 517 549 445896898 445896930 6.340000e-04 56.5
16 TraesCS1B01G263900 chr4A 89.697 495 41 7 1 495 521286692 521287176 1.390000e-174 623.0
17 TraesCS1B01G263900 chr7D 88.889 495 44 9 1 495 108986600 108986117 2.340000e-167 599.0
18 TraesCS1B01G263900 chr4B 88.485 495 45 8 1 495 584150442 584150924 5.060000e-164 588.0
19 TraesCS1B01G263900 chr4B 88.129 497 40 12 1 495 246320721 246320242 1.420000e-159 573.0
20 TraesCS1B01G263900 chr4B 96.875 128 4 0 3260 3387 517963663 517963790 9.890000e-52 215.0
21 TraesCS1B01G263900 chr7A 88.283 495 48 7 1 495 3032739 3032255 6.540000e-163 584.0
22 TraesCS1B01G263900 chr3A 87.928 497 49 8 1 495 726320986 726320499 3.940000e-160 575.0
23 TraesCS1B01G263900 chr6B 90.647 278 26 0 1008 1285 223657721 223657444 1.990000e-98 370.0
24 TraesCS1B01G263900 chr7B 96.850 127 4 0 3260 3386 637617928 637618054 3.560000e-51 213.0
25 TraesCS1B01G263900 chr7B 93.985 133 8 0 3257 3389 716496934 716496802 7.700000e-48 202.0
26 TraesCS1B01G263900 chr5D 96.850 127 4 0 3260 3386 500133475 500133601 3.560000e-51 213.0
27 TraesCS1B01G263900 chr3B 96.850 127 4 0 3260 3386 556538792 556538918 3.560000e-51 213.0
28 TraesCS1B01G263900 chrUn 96.094 128 5 0 3259 3386 293609603 293609476 4.600000e-50 209.0
29 TraesCS1B01G263900 chrUn 96.094 128 5 0 3259 3386 314565200 314565327 4.600000e-50 209.0
30 TraesCS1B01G263900 chr2D 96.063 127 5 0 3260 3386 58672253 58672127 1.650000e-49 207.0
31 TraesCS1B01G263900 chr2D 95.349 129 6 0 3258 3386 78576478 78576606 5.950000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G263900 chr1B 464480470 464485006 4536 True 8379.0 8379 100.0000 1 4537 1 chr1B.!!$R2 4536
1 TraesCS1B01G263900 chr1B 464150488 464151131 643 True 649.0 649 85.4040 3915 4537 1 chr1B.!!$R1 622
2 TraesCS1B01G263900 chr1D 345711845 345716034 4189 False 1423.5 2856 93.6860 511 4537 4 chr1D.!!$F2 4026
3 TraesCS1B01G263900 chr1D 345721399 345722034 635 False 612.0 612 84.4580 3915 4534 1 chr1D.!!$F1 619
4 TraesCS1B01G263900 chr1A 445914615 445918423 3808 False 1357.0 2767 93.6195 535 4534 4 chr1A.!!$F5 3999
5 TraesCS1B01G263900 chr1A 19446751 19448744 1993 False 583.0 586 88.2650 1 495 2 chr1A.!!$F4 494
6 TraesCS1B01G263900 chr1A 445934595 445935242 647 False 564.0 564 83.0770 3915 4536 1 chr1A.!!$F3 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.036732 ACGTGTGGGATGTGCAAGAT 59.963 50.0 0.0 0.0 0.0 2.40 F
961 995 0.107654 AATCAGGCGGTGGAAGTAGC 60.108 55.0 0.0 0.0 0.0 3.58 F
1420 1683 0.245539 GCCACAGCCTACAGTACGAA 59.754 55.0 0.0 0.0 0.0 3.85 F
2151 3127 0.252881 TCTCCCCTGCACCATCTCTT 60.253 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 3100 0.034896 GTGCAGGGGAGAAACTCGAA 59.965 55.000 0.00 0.0 0.00 3.71 R
2129 3105 0.329596 AGATGGTGCAGGGGAGAAAC 59.670 55.000 0.00 0.0 0.00 2.78 R
2250 3226 2.416547 AGTTGGAAATGCTGAATCGTCG 59.583 45.455 0.00 0.0 0.00 5.12 R
3820 5179 1.933181 TCAAGTTGTGAGTTGTCTGCG 59.067 47.619 2.11 0.0 37.45 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.816354 AACCATAAACTAAAATTGCCATGATAC 57.184 29.630 0.00 0.00 0.00 2.24
90 91 8.965819 TGCCATGATACATACACTTAAAATTGT 58.034 29.630 0.00 0.00 0.00 2.71
103 104 8.855110 ACACTTAAAATTGTCATGGTTCATACA 58.145 29.630 0.00 0.00 0.00 2.29
161 162 9.941325 TTGCCATCATCAAAATACTAAAATTGT 57.059 25.926 0.00 0.00 0.00 2.71
221 222 4.698304 TGGTTTAAGCACTATGGCAACTAC 59.302 41.667 0.00 0.00 35.83 2.73
233 234 5.880054 ATGGCAACTACAGTGTAAACATC 57.120 39.130 4.21 0.00 37.61 3.06
246 247 5.984926 AGTGTAAACATCATGGCAACTTTTG 59.015 36.000 0.00 0.00 37.61 2.44
249 250 2.328319 ACATCATGGCAACTTTTGGGT 58.672 42.857 0.00 0.00 37.61 4.51
250 251 3.505386 ACATCATGGCAACTTTTGGGTA 58.495 40.909 0.00 0.00 37.61 3.69
254 255 4.892433 TCATGGCAACTTTTGGGTAAATG 58.108 39.130 0.00 0.00 37.61 2.32
307 308 4.794246 GTCTAGTTTTGAAGATCTCGTCGG 59.206 45.833 0.00 0.00 0.00 4.79
310 311 2.649331 TTTGAAGATCTCGTCGGGAC 57.351 50.000 0.00 0.00 0.00 4.46
336 337 7.949428 CGGATTTGGATTTAATTTGTGAAAACG 59.051 33.333 0.00 0.00 0.00 3.60
405 406 8.969260 AGCCAAAAATCAAAAAGATTCTTTCT 57.031 26.923 11.92 0.00 46.09 2.52
406 407 8.833493 AGCCAAAAATCAAAAAGATTCTTTCTG 58.167 29.630 11.92 8.94 46.09 3.02
407 408 8.829612 GCCAAAAATCAAAAAGATTCTTTCTGA 58.170 29.630 15.57 15.57 46.09 3.27
415 416 9.293404 TCAAAAAGATTCTTTCTGATGTCATCT 57.707 29.630 10.44 0.00 33.93 2.90
416 417 9.343103 CAAAAAGATTCTTTCTGATGTCATCTG 57.657 33.333 11.92 13.06 33.93 2.90
417 418 8.632906 AAAAGATTCTTTCTGATGTCATCTGT 57.367 30.769 11.92 0.00 33.93 3.41
418 419 7.846644 AAGATTCTTTCTGATGTCATCTGTC 57.153 36.000 13.90 6.13 33.93 3.51
419 420 6.347696 AGATTCTTTCTGATGTCATCTGTCC 58.652 40.000 13.90 0.00 31.79 4.02
420 421 5.488262 TTCTTTCTGATGTCATCTGTCCA 57.512 39.130 13.90 0.83 0.00 4.02
421 422 4.825422 TCTTTCTGATGTCATCTGTCCAC 58.175 43.478 13.90 0.00 0.00 4.02
422 423 4.284234 TCTTTCTGATGTCATCTGTCCACA 59.716 41.667 13.90 0.00 0.00 4.17
423 424 3.599730 TCTGATGTCATCTGTCCACAC 57.400 47.619 13.90 0.00 0.00 3.82
424 425 2.094545 TCTGATGTCATCTGTCCACACG 60.095 50.000 13.90 0.00 0.00 4.49
425 426 1.618343 TGATGTCATCTGTCCACACGT 59.382 47.619 13.90 0.00 0.00 4.49
426 427 1.995484 GATGTCATCTGTCCACACGTG 59.005 52.381 15.48 15.48 0.00 4.49
427 428 1.036707 TGTCATCTGTCCACACGTGA 58.963 50.000 25.01 0.00 0.00 4.35
428 429 1.269569 TGTCATCTGTCCACACGTGAC 60.270 52.381 25.01 10.96 37.18 3.67
429 430 1.036707 TCATCTGTCCACACGTGACA 58.963 50.000 25.01 15.33 0.00 3.58
430 431 1.410882 TCATCTGTCCACACGTGACAA 59.589 47.619 25.01 7.72 0.00 3.18
431 432 2.159028 TCATCTGTCCACACGTGACAAA 60.159 45.455 25.01 3.07 0.00 2.83
432 433 2.388310 TCTGTCCACACGTGACAAAA 57.612 45.000 25.01 4.65 0.00 2.44
433 434 2.912771 TCTGTCCACACGTGACAAAAT 58.087 42.857 25.01 0.00 0.00 1.82
434 435 2.611751 TCTGTCCACACGTGACAAAATG 59.388 45.455 25.01 8.68 0.00 2.32
435 436 2.611751 CTGTCCACACGTGACAAAATGA 59.388 45.455 25.01 4.55 0.00 2.57
436 437 2.611751 TGTCCACACGTGACAAAATGAG 59.388 45.455 25.01 3.42 0.00 2.90
437 438 2.612212 GTCCACACGTGACAAAATGAGT 59.388 45.455 25.01 0.00 0.00 3.41
438 439 2.611751 TCCACACGTGACAAAATGAGTG 59.388 45.455 25.01 5.48 35.89 3.51
439 440 2.286950 CCACACGTGACAAAATGAGTGG 60.287 50.000 25.01 11.35 40.10 4.00
440 441 2.354510 CACACGTGACAAAATGAGTGGT 59.645 45.455 25.01 0.00 34.28 4.16
441 442 3.558006 CACACGTGACAAAATGAGTGGTA 59.442 43.478 25.01 0.00 34.28 3.25
442 443 4.034626 CACACGTGACAAAATGAGTGGTAA 59.965 41.667 25.01 0.00 34.28 2.85
443 444 4.819630 ACACGTGACAAAATGAGTGGTAAT 59.180 37.500 25.01 0.00 34.28 1.89
444 445 5.146460 CACGTGACAAAATGAGTGGTAATG 58.854 41.667 10.90 0.00 0.00 1.90
445 446 5.049749 CACGTGACAAAATGAGTGGTAATGA 60.050 40.000 10.90 0.00 0.00 2.57
446 447 5.529430 ACGTGACAAAATGAGTGGTAATGAA 59.471 36.000 0.00 0.00 0.00 2.57
447 448 6.079763 CGTGACAAAATGAGTGGTAATGAAG 58.920 40.000 0.00 0.00 0.00 3.02
448 449 6.381801 GTGACAAAATGAGTGGTAATGAAGG 58.618 40.000 0.00 0.00 0.00 3.46
449 450 5.048083 TGACAAAATGAGTGGTAATGAAGGC 60.048 40.000 0.00 0.00 0.00 4.35
450 451 4.832266 ACAAAATGAGTGGTAATGAAGGCA 59.168 37.500 0.00 0.00 0.00 4.75
451 452 5.163513 CAAAATGAGTGGTAATGAAGGCAC 58.836 41.667 0.00 0.00 0.00 5.01
452 453 2.093306 TGAGTGGTAATGAAGGCACG 57.907 50.000 0.00 0.00 0.00 5.34
453 454 1.346395 TGAGTGGTAATGAAGGCACGT 59.654 47.619 0.00 0.00 0.00 4.49
454 455 1.732259 GAGTGGTAATGAAGGCACGTG 59.268 52.381 12.28 12.28 0.00 4.49
455 456 1.071699 AGTGGTAATGAAGGCACGTGT 59.928 47.619 18.38 0.00 0.00 4.49
456 457 1.196808 GTGGTAATGAAGGCACGTGTG 59.803 52.381 18.38 0.00 0.00 3.82
457 458 0.802494 GGTAATGAAGGCACGTGTGG 59.198 55.000 18.38 0.00 0.00 4.17
458 459 0.802494 GTAATGAAGGCACGTGTGGG 59.198 55.000 18.38 0.00 0.00 4.61
459 460 0.687920 TAATGAAGGCACGTGTGGGA 59.312 50.000 18.38 0.00 0.00 4.37
460 461 0.038166 AATGAAGGCACGTGTGGGAT 59.962 50.000 18.38 0.51 0.00 3.85
461 462 0.677731 ATGAAGGCACGTGTGGGATG 60.678 55.000 18.38 0.00 0.00 3.51
462 463 1.302511 GAAGGCACGTGTGGGATGT 60.303 57.895 18.38 0.00 0.00 3.06
463 464 1.577328 GAAGGCACGTGTGGGATGTG 61.577 60.000 18.38 0.00 43.58 3.21
466 467 3.743208 CACGTGTGGGATGTGCAA 58.257 55.556 7.58 0.00 34.78 4.08
467 468 1.575922 CACGTGTGGGATGTGCAAG 59.424 57.895 7.58 0.00 34.78 4.01
468 469 0.884259 CACGTGTGGGATGTGCAAGA 60.884 55.000 7.58 0.00 34.78 3.02
469 470 0.036732 ACGTGTGGGATGTGCAAGAT 59.963 50.000 0.00 0.00 0.00 2.40
470 471 1.277842 ACGTGTGGGATGTGCAAGATA 59.722 47.619 0.00 0.00 0.00 1.98
471 472 2.092968 ACGTGTGGGATGTGCAAGATAT 60.093 45.455 0.00 0.00 0.00 1.63
472 473 2.545526 CGTGTGGGATGTGCAAGATATC 59.454 50.000 0.00 0.00 0.00 1.63
473 474 3.544684 GTGTGGGATGTGCAAGATATCA 58.455 45.455 5.32 0.00 0.00 2.15
474 475 4.139786 GTGTGGGATGTGCAAGATATCAT 58.860 43.478 5.32 0.00 0.00 2.45
475 476 5.308014 GTGTGGGATGTGCAAGATATCATA 58.692 41.667 5.32 0.00 0.00 2.15
476 477 5.180117 GTGTGGGATGTGCAAGATATCATAC 59.820 44.000 5.32 0.00 0.00 2.39
477 478 4.389992 GTGGGATGTGCAAGATATCATACG 59.610 45.833 5.32 0.00 0.00 3.06
478 479 4.040339 TGGGATGTGCAAGATATCATACGT 59.960 41.667 5.32 0.00 0.00 3.57
479 480 4.389992 GGGATGTGCAAGATATCATACGTG 59.610 45.833 5.32 0.00 0.00 4.49
480 481 4.991056 GGATGTGCAAGATATCATACGTGT 59.009 41.667 5.32 0.00 0.00 4.49
481 482 5.107337 GGATGTGCAAGATATCATACGTGTG 60.107 44.000 5.87 5.87 0.00 3.82
482 483 5.004922 TGTGCAAGATATCATACGTGTGA 57.995 39.130 17.69 17.69 0.00 3.58
483 484 5.043248 TGTGCAAGATATCATACGTGTGAG 58.957 41.667 19.95 6.85 0.00 3.51
484 485 4.051237 TGCAAGATATCATACGTGTGAGC 58.949 43.478 19.95 16.03 0.00 4.26
485 486 3.120286 GCAAGATATCATACGTGTGAGCG 59.880 47.826 19.95 6.19 37.94 5.03
487 488 4.569761 AGATATCATACGTGTGAGCGTT 57.430 40.909 19.95 6.28 43.04 4.84
488 489 5.684550 AGATATCATACGTGTGAGCGTTA 57.315 39.130 19.95 8.28 43.04 3.18
489 490 5.690816 AGATATCATACGTGTGAGCGTTAG 58.309 41.667 19.95 0.00 43.04 2.34
490 491 3.777465 ATCATACGTGTGAGCGTTAGT 57.223 42.857 19.95 0.00 43.04 2.24
491 492 3.564235 TCATACGTGTGAGCGTTAGTT 57.436 42.857 11.30 0.00 43.04 2.24
492 493 3.904571 TCATACGTGTGAGCGTTAGTTT 58.095 40.909 11.30 0.00 43.04 2.66
493 494 4.300803 TCATACGTGTGAGCGTTAGTTTT 58.699 39.130 11.30 0.00 43.04 2.43
494 495 4.746115 TCATACGTGTGAGCGTTAGTTTTT 59.254 37.500 11.30 0.00 43.04 1.94
495 496 5.919707 TCATACGTGTGAGCGTTAGTTTTTA 59.080 36.000 11.30 0.00 43.04 1.52
496 497 6.587226 TCATACGTGTGAGCGTTAGTTTTTAT 59.413 34.615 11.30 0.00 43.04 1.40
497 498 5.662211 ACGTGTGAGCGTTAGTTTTTATT 57.338 34.783 0.00 0.00 43.04 1.40
498 499 6.051646 ACGTGTGAGCGTTAGTTTTTATTT 57.948 33.333 0.00 0.00 43.04 1.40
499 500 6.488817 ACGTGTGAGCGTTAGTTTTTATTTT 58.511 32.000 0.00 0.00 43.04 1.82
500 501 7.629130 ACGTGTGAGCGTTAGTTTTTATTTTA 58.371 30.769 0.00 0.00 43.04 1.52
501 502 8.284693 ACGTGTGAGCGTTAGTTTTTATTTTAT 58.715 29.630 0.00 0.00 43.04 1.40
502 503 9.109533 CGTGTGAGCGTTAGTTTTTATTTTATT 57.890 29.630 0.00 0.00 0.00 1.40
562 565 2.096174 GCATTACCAAACGTGCCGAATA 59.904 45.455 0.00 0.00 0.00 1.75
566 569 1.302383 CCAAACGTGCCGAATAGCCA 61.302 55.000 0.00 0.00 0.00 4.75
571 574 0.813610 CGTGCCGAATAGCCATCCAA 60.814 55.000 0.00 0.00 0.00 3.53
572 575 1.388547 GTGCCGAATAGCCATCCAAA 58.611 50.000 0.00 0.00 0.00 3.28
573 576 1.334869 GTGCCGAATAGCCATCCAAAG 59.665 52.381 0.00 0.00 0.00 2.77
574 577 0.312102 GCCGAATAGCCATCCAAAGC 59.688 55.000 0.00 0.00 0.00 3.51
575 578 1.679139 CCGAATAGCCATCCAAAGCA 58.321 50.000 0.00 0.00 0.00 3.91
576 579 1.605710 CCGAATAGCCATCCAAAGCAG 59.394 52.381 0.00 0.00 0.00 4.24
577 580 2.292267 CGAATAGCCATCCAAAGCAGT 58.708 47.619 0.00 0.00 0.00 4.40
580 583 5.237815 CGAATAGCCATCCAAAGCAGTATA 58.762 41.667 0.00 0.00 0.00 1.47
756 772 2.511829 TCGAGAGCGACGAGGGAG 60.512 66.667 0.00 0.00 42.51 4.30
757 773 3.578272 CGAGAGCGACGAGGGAGG 61.578 72.222 0.00 0.00 40.82 4.30
758 774 2.124653 GAGAGCGACGAGGGAGGA 60.125 66.667 0.00 0.00 0.00 3.71
759 775 1.749638 GAGAGCGACGAGGGAGGAA 60.750 63.158 0.00 0.00 0.00 3.36
760 776 1.995646 GAGAGCGACGAGGGAGGAAC 61.996 65.000 0.00 0.00 0.00 3.62
761 777 3.066233 GAGCGACGAGGGAGGAACC 62.066 68.421 0.00 0.00 38.08 3.62
893 925 3.404425 AGCCTCCCTCTCCTAGATAACAT 59.596 47.826 0.00 0.00 0.00 2.71
933 967 3.560068 GCAAGAAGACGAGGAAAACAGAA 59.440 43.478 0.00 0.00 0.00 3.02
934 968 4.319118 GCAAGAAGACGAGGAAAACAGAAG 60.319 45.833 0.00 0.00 0.00 2.85
935 969 4.939052 AGAAGACGAGGAAAACAGAAGA 57.061 40.909 0.00 0.00 0.00 2.87
939 973 3.067833 GACGAGGAAAACAGAAGAAGGG 58.932 50.000 0.00 0.00 0.00 3.95
940 974 2.704065 ACGAGGAAAACAGAAGAAGGGA 59.296 45.455 0.00 0.00 0.00 4.20
943 977 4.503296 CGAGGAAAACAGAAGAAGGGAGAA 60.503 45.833 0.00 0.00 0.00 2.87
944 978 5.565509 GAGGAAAACAGAAGAAGGGAGAAT 58.434 41.667 0.00 0.00 0.00 2.40
945 979 5.565509 AGGAAAACAGAAGAAGGGAGAATC 58.434 41.667 0.00 0.00 0.00 2.52
946 980 5.073691 AGGAAAACAGAAGAAGGGAGAATCA 59.926 40.000 0.00 0.00 36.25 2.57
947 981 5.414144 GGAAAACAGAAGAAGGGAGAATCAG 59.586 44.000 0.00 0.00 36.25 2.90
949 983 2.238395 ACAGAAGAAGGGAGAATCAGGC 59.762 50.000 0.00 0.00 36.25 4.85
950 984 1.484240 AGAAGAAGGGAGAATCAGGCG 59.516 52.381 0.00 0.00 36.25 5.52
951 985 0.543749 AAGAAGGGAGAATCAGGCGG 59.456 55.000 0.00 0.00 36.25 6.13
952 986 0.618968 AGAAGGGAGAATCAGGCGGT 60.619 55.000 0.00 0.00 36.25 5.68
953 987 0.462759 GAAGGGAGAATCAGGCGGTG 60.463 60.000 0.00 0.00 36.25 4.94
954 988 1.915078 AAGGGAGAATCAGGCGGTGG 61.915 60.000 0.00 0.00 36.25 4.61
955 989 2.367202 GGGAGAATCAGGCGGTGGA 61.367 63.158 0.00 0.00 36.25 4.02
956 990 1.602237 GGAGAATCAGGCGGTGGAA 59.398 57.895 0.00 0.00 36.25 3.53
957 991 0.462759 GGAGAATCAGGCGGTGGAAG 60.463 60.000 0.00 0.00 36.25 3.46
958 992 0.250513 GAGAATCAGGCGGTGGAAGT 59.749 55.000 0.00 0.00 33.17 3.01
959 993 1.480954 GAGAATCAGGCGGTGGAAGTA 59.519 52.381 0.00 0.00 33.17 2.24
960 994 1.482593 AGAATCAGGCGGTGGAAGTAG 59.517 52.381 0.00 0.00 0.00 2.57
961 995 0.107654 AATCAGGCGGTGGAAGTAGC 60.108 55.000 0.00 0.00 0.00 3.58
962 996 1.264749 ATCAGGCGGTGGAAGTAGCA 61.265 55.000 0.00 0.00 0.00 3.49
963 997 1.741770 CAGGCGGTGGAAGTAGCAC 60.742 63.158 0.00 0.00 0.00 4.40
964 998 2.813908 GGCGGTGGAAGTAGCACG 60.814 66.667 0.00 0.00 0.00 5.34
965 999 2.260434 GCGGTGGAAGTAGCACGA 59.740 61.111 0.00 0.00 0.00 4.35
986 1020 2.269241 GGAGGAGCCGAACCAAGG 59.731 66.667 0.00 0.00 0.00 3.61
987 1021 2.269241 GAGGAGCCGAACCAAGGG 59.731 66.667 0.00 0.00 0.00 3.95
988 1022 3.330720 AGGAGCCGAACCAAGGGG 61.331 66.667 0.00 0.00 41.29 4.79
989 1023 4.426313 GGAGCCGAACCAAGGGGG 62.426 72.222 0.00 0.00 44.81 5.40
1304 1560 3.676873 GCCGAGGACGACAAGGTAATTAA 60.677 47.826 0.00 0.00 42.66 1.40
1313 1569 7.041576 GGACGACAAGGTAATTAAAGTTTGTCT 60.042 37.037 19.43 12.39 41.16 3.41
1316 1572 7.341445 ACAAGGTAATTAAAGTTTGTCTGCA 57.659 32.000 0.00 0.00 0.00 4.41
1320 1576 4.829064 AATTAAAGTTTGTCTGCAGCGA 57.171 36.364 9.47 1.01 0.00 4.93
1323 1579 1.668419 AAGTTTGTCTGCAGCGAACT 58.332 45.000 25.60 25.60 41.03 3.01
1336 1592 3.152261 AGCGAACTGATGTACTAGTGC 57.848 47.619 5.39 4.49 0.00 4.40
1338 1594 2.599082 GCGAACTGATGTACTAGTGCAC 59.401 50.000 16.34 9.40 0.00 4.57
1339 1595 3.673594 GCGAACTGATGTACTAGTGCACT 60.674 47.826 25.12 25.12 0.00 4.40
1340 1596 4.438336 GCGAACTGATGTACTAGTGCACTA 60.438 45.833 24.63 24.63 0.00 2.74
1341 1597 5.029014 CGAACTGATGTACTAGTGCACTAC 58.971 45.833 22.67 16.24 0.00 2.73
1342 1598 5.163744 CGAACTGATGTACTAGTGCACTACT 60.164 44.000 22.67 15.83 43.56 2.57
1343 1599 5.568685 ACTGATGTACTAGTGCACTACTG 57.431 43.478 22.67 16.06 40.65 2.74
1345 1601 4.595986 TGATGTACTAGTGCACTACTGGA 58.404 43.478 22.67 8.23 40.06 3.86
1346 1602 5.014202 TGATGTACTAGTGCACTACTGGAA 58.986 41.667 22.67 8.05 40.06 3.53
1347 1603 5.656859 TGATGTACTAGTGCACTACTGGAAT 59.343 40.000 22.67 12.22 40.06 3.01
1348 1604 5.578005 TGTACTAGTGCACTACTGGAATC 57.422 43.478 22.67 9.30 40.06 2.52
1349 1605 4.401519 TGTACTAGTGCACTACTGGAATCC 59.598 45.833 22.67 5.71 40.06 3.01
1350 1606 3.441101 ACTAGTGCACTACTGGAATCCA 58.559 45.455 22.67 0.48 40.06 3.41
1351 1607 2.770164 AGTGCACTACTGGAATCCAC 57.230 50.000 20.16 0.00 38.49 4.02
1352 1608 1.279271 AGTGCACTACTGGAATCCACC 59.721 52.381 20.16 0.00 38.49 4.61
1353 1609 1.003118 GTGCACTACTGGAATCCACCA 59.997 52.381 10.32 0.00 38.33 4.17
1360 1616 3.076350 TGGAATCCACCAGTACCGT 57.924 52.632 0.00 0.00 34.77 4.83
1367 1623 0.953960 CCACCAGTACCGTTGGCTTC 60.954 60.000 0.00 0.00 39.39 3.86
1383 1639 1.613836 CTTCCTGAGCTTGGCTTTGT 58.386 50.000 0.00 0.00 39.88 2.83
1388 1644 2.224606 CTGAGCTTGGCTTTGTCTGAA 58.775 47.619 0.00 0.00 39.88 3.02
1405 1668 1.754226 TGAAAAGTGTTTCCAGGCCAC 59.246 47.619 5.01 0.00 42.20 5.01
1406 1669 1.754226 GAAAAGTGTTTCCAGGCCACA 59.246 47.619 5.01 0.00 37.72 4.17
1407 1670 1.402787 AAAGTGTTTCCAGGCCACAG 58.597 50.000 5.01 0.00 0.00 3.66
1408 1671 1.109323 AAGTGTTTCCAGGCCACAGC 61.109 55.000 5.01 0.00 38.76 4.40
1418 1681 4.496670 GCCACAGCCTACAGTACG 57.503 61.111 0.00 0.00 0.00 3.67
1419 1682 1.888018 GCCACAGCCTACAGTACGA 59.112 57.895 0.00 0.00 0.00 3.43
1420 1683 0.245539 GCCACAGCCTACAGTACGAA 59.754 55.000 0.00 0.00 0.00 3.85
1421 1684 1.134788 GCCACAGCCTACAGTACGAAT 60.135 52.381 0.00 0.00 0.00 3.34
1422 1685 2.810650 CCACAGCCTACAGTACGAATC 58.189 52.381 0.00 0.00 0.00 2.52
1423 1686 2.165641 CCACAGCCTACAGTACGAATCA 59.834 50.000 0.00 0.00 0.00 2.57
1424 1687 3.181475 CCACAGCCTACAGTACGAATCAT 60.181 47.826 0.00 0.00 0.00 2.45
1429 1736 5.403766 CAGCCTACAGTACGAATCATGAATC 59.596 44.000 0.00 0.00 0.00 2.52
1435 1742 7.615582 ACAGTACGAATCATGAATCAACAAT 57.384 32.000 11.26 0.00 0.00 2.71
1436 1743 8.044060 ACAGTACGAATCATGAATCAACAATT 57.956 30.769 11.26 0.00 0.00 2.32
1451 1758 6.492007 TCAACAATTTGATGCTTCTCTCTC 57.508 37.500 2.79 0.00 36.79 3.20
1458 1765 5.581126 TTGATGCTTCTCTCTCTTCTCTC 57.419 43.478 0.88 0.00 0.00 3.20
1596 1911 4.668576 TCAAAATTCGAGAGATGTGTGC 57.331 40.909 0.00 0.00 41.60 4.57
1720 2045 3.773667 TCATGGCCTGGATTGCAAATTAA 59.226 39.130 1.71 0.00 0.00 1.40
1721 2046 4.409574 TCATGGCCTGGATTGCAAATTAAT 59.590 37.500 1.71 0.00 0.00 1.40
1857 2828 9.706691 TTTACGATTTCAGAGTCTAAAGATTGT 57.293 29.630 0.00 0.00 0.00 2.71
1964 2935 6.650120 AGATGATGACAAACCCGTAAGTTAT 58.350 36.000 0.00 0.00 0.00 1.89
2009 2985 2.897271 TAATTCCTGCAAGAGCCCAA 57.103 45.000 0.00 0.00 41.13 4.12
2122 3098 1.363744 CAAGGCTAAGCTCACCGAAG 58.636 55.000 0.00 0.00 0.00 3.79
2142 3118 0.321671 CTTCGAGTTTCTCCCCTGCA 59.678 55.000 0.00 0.00 0.00 4.41
2149 3125 0.620556 TTTCTCCCCTGCACCATCTC 59.379 55.000 0.00 0.00 0.00 2.75
2151 3127 0.252881 TCTCCCCTGCACCATCTCTT 60.253 55.000 0.00 0.00 0.00 2.85
2179 3155 7.458397 AGGTACTGTAGAATTTTCATGGTTCA 58.542 34.615 0.00 0.00 37.18 3.18
2183 3159 7.596494 ACTGTAGAATTTTCATGGTTCATGTG 58.404 34.615 7.63 0.00 41.98 3.21
2187 3163 7.230849 AGAATTTTCATGGTTCATGTGCTAA 57.769 32.000 7.63 0.59 41.98 3.09
2188 3164 7.318141 AGAATTTTCATGGTTCATGTGCTAAG 58.682 34.615 7.63 0.00 41.98 2.18
2236 3212 5.831997 ACCACAAGAATTAACTTGACTTGC 58.168 37.500 12.48 0.00 46.85 4.01
2250 3226 5.122396 ACTTGACTTGCGGATTTTATCAGAC 59.878 40.000 0.00 0.00 0.00 3.51
2612 3589 2.631062 TCTTCGGTCTTTTCCAGTAGCA 59.369 45.455 0.00 0.00 0.00 3.49
2818 3796 7.572759 ACATAACGCTGGTTCATAAATTATCG 58.427 34.615 0.00 0.00 37.58 2.92
2877 3855 1.336517 GGACGAACACGAGTTGATGGA 60.337 52.381 2.02 0.00 38.30 3.41
2950 3928 4.307432 ACTCTGGAACACACAGTATTTCG 58.693 43.478 0.00 0.00 37.25 3.46
2957 3935 5.062308 GGAACACACAGTATTTCGATCTGTC 59.938 44.000 9.12 1.39 39.89 3.51
2976 3954 3.209410 GTCATTAGGCAGGAAGTGGATG 58.791 50.000 0.00 0.00 0.00 3.51
2978 3956 2.787473 TTAGGCAGGAAGTGGATGTG 57.213 50.000 0.00 0.00 0.00 3.21
3051 4029 4.196971 GGGTCTCCGCTTTTATGTACAAT 58.803 43.478 0.00 0.00 0.00 2.71
3052 4030 4.035208 GGGTCTCCGCTTTTATGTACAATG 59.965 45.833 0.00 0.00 0.00 2.82
3053 4031 4.495844 GGTCTCCGCTTTTATGTACAATGC 60.496 45.833 0.00 0.00 0.00 3.56
3057 4035 5.636837 TCCGCTTTTATGTACAATGCTTTC 58.363 37.500 0.00 0.00 0.00 2.62
3103 4090 9.192642 TGTTTATGGCTATTCACTACTAGTACA 57.807 33.333 0.00 0.00 0.00 2.90
3159 4146 1.080569 CAACCATGCAGAAACCGCC 60.081 57.895 0.00 0.00 0.00 6.13
3259 4246 6.940739 ACTGTTTCTCTGCTATGTATCAAGT 58.059 36.000 0.00 0.00 0.00 3.16
3260 4247 8.067751 ACTGTTTCTCTGCTATGTATCAAGTA 57.932 34.615 0.00 0.00 0.00 2.24
3261 4248 7.976734 ACTGTTTCTCTGCTATGTATCAAGTAC 59.023 37.037 0.00 0.00 0.00 2.73
3262 4249 8.067751 TGTTTCTCTGCTATGTATCAAGTACT 57.932 34.615 0.00 0.00 34.27 2.73
3263 4250 8.191446 TGTTTCTCTGCTATGTATCAAGTACTC 58.809 37.037 0.00 0.00 34.27 2.59
3264 4251 6.885952 TCTCTGCTATGTATCAAGTACTCC 57.114 41.667 0.00 0.00 34.27 3.85
3265 4252 5.770663 TCTCTGCTATGTATCAAGTACTCCC 59.229 44.000 0.00 0.00 34.27 4.30
3266 4253 4.833380 TCTGCTATGTATCAAGTACTCCCC 59.167 45.833 0.00 0.00 34.27 4.81
3267 4254 3.901844 TGCTATGTATCAAGTACTCCCCC 59.098 47.826 0.00 0.00 34.27 5.40
3284 4271 2.797786 CCCCCGTTCCAAATTACTTGA 58.202 47.619 0.00 0.00 37.17 3.02
3285 4272 2.490509 CCCCCGTTCCAAATTACTTGAC 59.509 50.000 0.00 0.00 37.17 3.18
3286 4273 3.418047 CCCCGTTCCAAATTACTTGACT 58.582 45.455 0.00 0.00 37.17 3.41
3287 4274 3.824443 CCCCGTTCCAAATTACTTGACTT 59.176 43.478 0.00 0.00 37.17 3.01
3288 4275 4.279922 CCCCGTTCCAAATTACTTGACTTT 59.720 41.667 0.00 0.00 37.17 2.66
3289 4276 5.458015 CCCGTTCCAAATTACTTGACTTTC 58.542 41.667 0.00 0.00 37.17 2.62
3290 4277 5.009210 CCCGTTCCAAATTACTTGACTTTCA 59.991 40.000 0.00 0.00 37.17 2.69
3291 4278 6.294508 CCCGTTCCAAATTACTTGACTTTCAT 60.295 38.462 0.00 0.00 37.17 2.57
3292 4279 7.145323 CCGTTCCAAATTACTTGACTTTCATT 58.855 34.615 0.00 0.00 37.17 2.57
3293 4280 7.651704 CCGTTCCAAATTACTTGACTTTCATTT 59.348 33.333 0.00 0.00 37.17 2.32
3294 4281 8.479280 CGTTCCAAATTACTTGACTTTCATTTG 58.521 33.333 0.00 0.00 37.17 2.32
3295 4282 9.313118 GTTCCAAATTACTTGACTTTCATTTGT 57.687 29.630 0.00 0.00 37.17 2.83
3296 4283 9.528018 TTCCAAATTACTTGACTTTCATTTGTC 57.472 29.630 0.00 0.00 37.17 3.18
3297 4284 8.912988 TCCAAATTACTTGACTTTCATTTGTCT 58.087 29.630 0.00 0.00 37.17 3.41
3304 4291 8.467402 ACTTGACTTTCATTTGTCTAGATACG 57.533 34.615 10.42 0.00 38.64 3.06
3305 4292 8.304596 ACTTGACTTTCATTTGTCTAGATACGA 58.695 33.333 10.42 0.00 38.64 3.43
3306 4293 9.140286 CTTGACTTTCATTTGTCTAGATACGAA 57.860 33.333 0.00 0.00 37.94 3.85
3307 4294 9.653287 TTGACTTTCATTTGTCTAGATACGAAT 57.347 29.630 0.00 0.00 34.42 3.34
3308 4295 9.087424 TGACTTTCATTTGTCTAGATACGAATG 57.913 33.333 14.40 14.40 46.23 2.67
3309 4296 9.088512 GACTTTCATTTGTCTAGATACGAATGT 57.911 33.333 17.75 14.18 45.54 2.71
3341 4328 7.481642 ACTTGTTTAGTGTCTAGATACATCCG 58.518 38.462 20.24 5.79 35.19 4.18
3342 4329 7.122353 ACTTGTTTAGTGTCTAGATACATCCGT 59.878 37.037 20.24 3.37 35.19 4.69
3343 4330 8.510243 TTGTTTAGTGTCTAGATACATCCGTA 57.490 34.615 20.24 2.45 0.00 4.02
3344 4331 8.687292 TGTTTAGTGTCTAGATACATCCGTAT 57.313 34.615 20.24 2.04 41.16 3.06
3357 4344 7.776618 ATACATCCGTATCTAGACAAATGGA 57.223 36.000 12.58 12.58 32.66 3.41
3358 4345 6.090483 ACATCCGTATCTAGACAAATGGAG 57.910 41.667 14.58 10.55 30.79 3.86
3359 4346 5.011125 ACATCCGTATCTAGACAAATGGAGG 59.989 44.000 16.90 16.90 35.47 4.30
3360 4347 4.543689 TCCGTATCTAGACAAATGGAGGT 58.456 43.478 0.00 0.00 0.00 3.85
3361 4348 4.583489 TCCGTATCTAGACAAATGGAGGTC 59.417 45.833 0.00 0.00 0.00 3.85
3362 4349 4.341235 CCGTATCTAGACAAATGGAGGTCA 59.659 45.833 0.00 0.00 36.50 4.02
3363 4350 5.163447 CCGTATCTAGACAAATGGAGGTCAA 60.163 44.000 0.00 0.00 36.50 3.18
3364 4351 5.980116 CGTATCTAGACAAATGGAGGTCAAG 59.020 44.000 0.00 0.00 36.50 3.02
3365 4352 6.405953 CGTATCTAGACAAATGGAGGTCAAGT 60.406 42.308 0.00 0.00 36.50 3.16
3366 4353 7.201794 CGTATCTAGACAAATGGAGGTCAAGTA 60.202 40.741 0.00 0.00 36.50 2.24
3367 4354 6.928348 TCTAGACAAATGGAGGTCAAGTAA 57.072 37.500 0.00 0.00 36.50 2.24
3368 4355 7.496346 TCTAGACAAATGGAGGTCAAGTAAT 57.504 36.000 0.00 0.00 36.50 1.89
3369 4356 7.918076 TCTAGACAAATGGAGGTCAAGTAATT 58.082 34.615 0.00 0.00 36.50 1.40
3370 4357 8.383175 TCTAGACAAATGGAGGTCAAGTAATTT 58.617 33.333 0.00 0.00 36.50 1.82
3371 4358 7.219484 AGACAAATGGAGGTCAAGTAATTTG 57.781 36.000 0.00 0.00 39.65 2.32
3372 4359 6.209391 AGACAAATGGAGGTCAAGTAATTTGG 59.791 38.462 9.85 0.00 38.63 3.28
3373 4360 6.074648 ACAAATGGAGGTCAAGTAATTTGGA 58.925 36.000 9.85 0.00 38.63 3.53
3374 4361 6.553100 ACAAATGGAGGTCAAGTAATTTGGAA 59.447 34.615 9.85 0.00 38.63 3.53
3375 4362 6.590234 AATGGAGGTCAAGTAATTTGGAAC 57.410 37.500 0.00 0.00 37.39 3.62
3376 4363 4.069304 TGGAGGTCAAGTAATTTGGAACG 58.931 43.478 0.00 0.00 37.39 3.95
3377 4364 3.439129 GGAGGTCAAGTAATTTGGAACGG 59.561 47.826 0.00 0.00 37.39 4.44
3378 4365 4.320870 GAGGTCAAGTAATTTGGAACGGA 58.679 43.478 0.00 0.00 37.39 4.69
3379 4366 4.324267 AGGTCAAGTAATTTGGAACGGAG 58.676 43.478 0.00 0.00 37.39 4.63
3380 4367 3.439129 GGTCAAGTAATTTGGAACGGAGG 59.561 47.826 0.00 0.00 37.39 4.30
3381 4368 3.439129 GTCAAGTAATTTGGAACGGAGGG 59.561 47.826 0.00 0.00 37.39 4.30
3382 4369 3.328343 TCAAGTAATTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 37.39 4.20
3548 4535 7.862873 CGCACTCATCATTAGAGTTCTACAATA 59.137 37.037 0.00 0.00 43.47 1.90
3866 5225 7.538303 TTCAGAAGCAAAACAAGAAATTTCC 57.462 32.000 14.61 0.00 0.00 3.13
3890 5249 2.431954 AGTGCCAGAATCAATGGAGG 57.568 50.000 0.00 0.00 40.51 4.30
4030 5393 1.215423 GGCCCTGAATTATCTGGTGGT 59.785 52.381 0.00 0.00 41.74 4.16
4102 5465 6.920210 ACTGCTTCTTGTTTGCTAAAGAATTC 59.080 34.615 0.00 0.00 40.60 2.17
4155 5518 5.243507 TGAAATCACTTAACACATGCACCAT 59.756 36.000 0.00 0.00 0.00 3.55
4381 5777 2.688507 AGTTACACGGAGCATCAAGTG 58.311 47.619 0.00 0.00 46.15 3.16
4506 5908 4.464008 ACTTTGATTCAGGAGTTTGCTGA 58.536 39.130 0.00 0.00 43.20 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.469657 TGGTTCATGGCAAGTCTAGTTTT 58.530 39.130 0.00 0.00 0.00 2.43
48 49 9.816354 GTATCATGGCAATTTTAGTTTATGGTT 57.184 29.630 0.00 0.00 0.00 3.67
74 75 9.859427 ATGAACCATGACAATTTTAAGTGTATG 57.141 29.630 0.00 2.00 37.34 2.39
77 78 8.855110 TGTATGAACCATGACAATTTTAAGTGT 58.145 29.630 0.00 0.00 40.27 3.55
119 120 4.098914 TGGCAATTCCACTACTTTGACT 57.901 40.909 0.00 0.00 40.72 3.41
150 151 9.502091 AGTTTGTAGAGCATGACAATTTTAGTA 57.498 29.630 0.00 0.00 35.57 1.82
161 162 6.208402 TGGCAATTTTAGTTTGTAGAGCATGA 59.792 34.615 0.00 0.00 0.00 3.07
199 200 4.698304 TGTAGTTGCCATAGTGCTTAAACC 59.302 41.667 0.00 0.00 0.00 3.27
221 222 4.771590 AGTTGCCATGATGTTTACACTG 57.228 40.909 0.00 0.00 0.00 3.66
233 234 4.640364 ACATTTACCCAAAAGTTGCCATG 58.360 39.130 0.00 0.00 0.00 3.66
273 274 4.394729 TCAAAACTAGACCCCATGTTGAC 58.605 43.478 0.00 0.00 0.00 3.18
307 308 6.626302 TCACAAATTAAATCCAAATCCGTCC 58.374 36.000 0.00 0.00 0.00 4.79
310 311 7.949428 CGTTTTCACAAATTAAATCCAAATCCG 59.051 33.333 0.00 0.00 0.00 4.18
389 390 9.293404 AGATGACATCAGAAAGAATCTTTTTGA 57.707 29.630 24.71 24.71 35.73 2.69
390 391 9.343103 CAGATGACATCAGAAAGAATCTTTTTG 57.657 33.333 17.15 17.15 35.73 2.44
391 392 9.075678 ACAGATGACATCAGAAAGAATCTTTTT 57.924 29.630 17.57 0.95 35.73 1.94
392 393 8.632906 ACAGATGACATCAGAAAGAATCTTTT 57.367 30.769 17.57 0.00 35.73 2.27
393 394 7.336427 GGACAGATGACATCAGAAAGAATCTTT 59.664 37.037 17.57 8.12 35.73 2.52
394 395 6.822676 GGACAGATGACATCAGAAAGAATCTT 59.177 38.462 17.57 0.00 35.73 2.40
395 396 6.070366 TGGACAGATGACATCAGAAAGAATCT 60.070 38.462 17.57 0.00 39.68 2.40
396 397 6.036953 GTGGACAGATGACATCAGAAAGAATC 59.963 42.308 17.57 2.40 0.00 2.52
397 398 5.879223 GTGGACAGATGACATCAGAAAGAAT 59.121 40.000 17.57 0.00 0.00 2.40
398 399 5.221702 TGTGGACAGATGACATCAGAAAGAA 60.222 40.000 17.57 0.00 0.00 2.52
399 400 4.284234 TGTGGACAGATGACATCAGAAAGA 59.716 41.667 17.57 0.00 0.00 2.52
400 401 4.391216 GTGTGGACAGATGACATCAGAAAG 59.609 45.833 17.57 4.63 0.00 2.62
401 402 4.318332 GTGTGGACAGATGACATCAGAAA 58.682 43.478 17.57 0.00 0.00 2.52
402 403 3.614870 CGTGTGGACAGATGACATCAGAA 60.615 47.826 17.57 0.00 0.00 3.02
403 404 2.094545 CGTGTGGACAGATGACATCAGA 60.095 50.000 17.57 0.00 0.00 3.27
404 405 2.265683 CGTGTGGACAGATGACATCAG 58.734 52.381 17.57 11.95 0.00 2.90
405 406 1.618343 ACGTGTGGACAGATGACATCA 59.382 47.619 17.57 0.00 0.00 3.07
406 407 1.995484 CACGTGTGGACAGATGACATC 59.005 52.381 7.58 7.39 0.00 3.06
407 408 1.618343 TCACGTGTGGACAGATGACAT 59.382 47.619 16.51 0.00 0.00 3.06
408 409 1.036707 TCACGTGTGGACAGATGACA 58.963 50.000 16.51 0.00 0.00 3.58
409 410 1.269569 TGTCACGTGTGGACAGATGAC 60.270 52.381 16.51 13.12 40.16 3.06
410 411 1.036707 TGTCACGTGTGGACAGATGA 58.963 50.000 16.51 0.00 40.16 2.92
411 412 1.864565 TTGTCACGTGTGGACAGATG 58.135 50.000 16.51 0.00 45.20 2.90
412 413 2.613026 TTTGTCACGTGTGGACAGAT 57.387 45.000 16.51 0.00 45.20 2.90
413 414 2.388310 TTTTGTCACGTGTGGACAGA 57.612 45.000 16.51 5.22 45.20 3.41
414 415 2.611751 TCATTTTGTCACGTGTGGACAG 59.388 45.455 16.51 1.33 45.20 3.51
415 416 2.611751 CTCATTTTGTCACGTGTGGACA 59.388 45.455 16.51 10.04 43.12 4.02
416 417 2.612212 ACTCATTTTGTCACGTGTGGAC 59.388 45.455 16.51 7.21 35.83 4.02
417 418 2.611751 CACTCATTTTGTCACGTGTGGA 59.388 45.455 16.51 0.00 0.00 4.02
418 419 2.286950 CCACTCATTTTGTCACGTGTGG 60.287 50.000 16.51 7.77 37.87 4.17
419 420 2.354510 ACCACTCATTTTGTCACGTGTG 59.645 45.455 16.51 5.29 0.00 3.82
420 421 2.639065 ACCACTCATTTTGTCACGTGT 58.361 42.857 16.51 0.00 0.00 4.49
421 422 4.804608 TTACCACTCATTTTGTCACGTG 57.195 40.909 9.94 9.94 0.00 4.49
422 423 5.060506 TCATTACCACTCATTTTGTCACGT 58.939 37.500 0.00 0.00 0.00 4.49
423 424 5.605564 TCATTACCACTCATTTTGTCACG 57.394 39.130 0.00 0.00 0.00 4.35
424 425 6.381801 CCTTCATTACCACTCATTTTGTCAC 58.618 40.000 0.00 0.00 0.00 3.67
425 426 5.048083 GCCTTCATTACCACTCATTTTGTCA 60.048 40.000 0.00 0.00 0.00 3.58
426 427 5.048083 TGCCTTCATTACCACTCATTTTGTC 60.048 40.000 0.00 0.00 0.00 3.18
427 428 4.832266 TGCCTTCATTACCACTCATTTTGT 59.168 37.500 0.00 0.00 0.00 2.83
428 429 5.163513 GTGCCTTCATTACCACTCATTTTG 58.836 41.667 0.00 0.00 0.00 2.44
429 430 4.082787 CGTGCCTTCATTACCACTCATTTT 60.083 41.667 0.00 0.00 0.00 1.82
430 431 3.440173 CGTGCCTTCATTACCACTCATTT 59.560 43.478 0.00 0.00 0.00 2.32
431 432 3.009723 CGTGCCTTCATTACCACTCATT 58.990 45.455 0.00 0.00 0.00 2.57
432 433 2.027192 ACGTGCCTTCATTACCACTCAT 60.027 45.455 0.00 0.00 0.00 2.90
433 434 1.346395 ACGTGCCTTCATTACCACTCA 59.654 47.619 0.00 0.00 0.00 3.41
434 435 1.732259 CACGTGCCTTCATTACCACTC 59.268 52.381 0.82 0.00 0.00 3.51
435 436 1.071699 ACACGTGCCTTCATTACCACT 59.928 47.619 17.22 0.00 0.00 4.00
436 437 1.196808 CACACGTGCCTTCATTACCAC 59.803 52.381 17.22 0.00 0.00 4.16
437 438 1.518325 CACACGTGCCTTCATTACCA 58.482 50.000 17.22 0.00 0.00 3.25
438 439 0.802494 CCACACGTGCCTTCATTACC 59.198 55.000 17.22 0.00 0.00 2.85
439 440 0.802494 CCCACACGTGCCTTCATTAC 59.198 55.000 17.22 0.00 0.00 1.89
440 441 0.687920 TCCCACACGTGCCTTCATTA 59.312 50.000 17.22 0.00 0.00 1.90
441 442 0.038166 ATCCCACACGTGCCTTCATT 59.962 50.000 17.22 0.00 0.00 2.57
442 443 0.677731 CATCCCACACGTGCCTTCAT 60.678 55.000 17.22 0.00 0.00 2.57
443 444 1.302431 CATCCCACACGTGCCTTCA 60.302 57.895 17.22 0.00 0.00 3.02
444 445 1.302511 ACATCCCACACGTGCCTTC 60.303 57.895 17.22 0.00 0.00 3.46
445 446 1.600636 CACATCCCACACGTGCCTT 60.601 57.895 17.22 0.00 0.00 4.35
446 447 2.032528 CACATCCCACACGTGCCT 59.967 61.111 17.22 0.00 0.00 4.75
449 450 0.884259 TCTTGCACATCCCACACGTG 60.884 55.000 15.48 15.48 0.00 4.49
450 451 0.036732 ATCTTGCACATCCCACACGT 59.963 50.000 0.00 0.00 0.00 4.49
451 452 2.022764 TATCTTGCACATCCCACACG 57.977 50.000 0.00 0.00 0.00 4.49
452 453 3.544684 TGATATCTTGCACATCCCACAC 58.455 45.455 3.98 0.00 0.00 3.82
453 454 3.929955 TGATATCTTGCACATCCCACA 57.070 42.857 3.98 0.00 0.00 4.17
454 455 4.389992 CGTATGATATCTTGCACATCCCAC 59.610 45.833 3.98 0.00 0.00 4.61
455 456 4.040339 ACGTATGATATCTTGCACATCCCA 59.960 41.667 3.98 0.00 0.00 4.37
456 457 4.389992 CACGTATGATATCTTGCACATCCC 59.610 45.833 3.98 0.00 0.00 3.85
457 458 4.991056 ACACGTATGATATCTTGCACATCC 59.009 41.667 3.98 0.00 0.00 3.51
458 459 5.691754 TCACACGTATGATATCTTGCACATC 59.308 40.000 3.98 0.00 0.00 3.06
459 460 5.600696 TCACACGTATGATATCTTGCACAT 58.399 37.500 3.98 0.00 0.00 3.21
460 461 5.004922 TCACACGTATGATATCTTGCACA 57.995 39.130 3.98 0.00 0.00 4.57
461 462 4.084849 GCTCACACGTATGATATCTTGCAC 60.085 45.833 0.00 0.00 0.00 4.57
462 463 4.051237 GCTCACACGTATGATATCTTGCA 58.949 43.478 0.00 0.00 0.00 4.08
463 464 3.120286 CGCTCACACGTATGATATCTTGC 59.880 47.826 0.00 0.00 0.00 4.01
464 465 4.290969 ACGCTCACACGTATGATATCTTG 58.709 43.478 0.00 0.00 46.19 3.02
465 466 4.569761 ACGCTCACACGTATGATATCTT 57.430 40.909 0.00 0.00 46.19 2.40
476 477 6.963017 AAAATAAAAACTAACGCTCACACG 57.037 33.333 0.00 0.00 39.50 4.49
491 492 9.372369 CCGTGCAATCCCTAAAATAAAATAAAA 57.628 29.630 0.00 0.00 0.00 1.52
492 493 8.532819 ACCGTGCAATCCCTAAAATAAAATAAA 58.467 29.630 0.00 0.00 0.00 1.40
493 494 7.976734 CACCGTGCAATCCCTAAAATAAAATAA 59.023 33.333 0.00 0.00 0.00 1.40
494 495 7.339721 TCACCGTGCAATCCCTAAAATAAAATA 59.660 33.333 0.00 0.00 0.00 1.40
495 496 6.153680 TCACCGTGCAATCCCTAAAATAAAAT 59.846 34.615 0.00 0.00 0.00 1.82
496 497 5.477291 TCACCGTGCAATCCCTAAAATAAAA 59.523 36.000 0.00 0.00 0.00 1.52
497 498 5.010933 TCACCGTGCAATCCCTAAAATAAA 58.989 37.500 0.00 0.00 0.00 1.40
498 499 4.590918 TCACCGTGCAATCCCTAAAATAA 58.409 39.130 0.00 0.00 0.00 1.40
499 500 4.223556 TCACCGTGCAATCCCTAAAATA 57.776 40.909 0.00 0.00 0.00 1.40
500 501 3.080300 TCACCGTGCAATCCCTAAAAT 57.920 42.857 0.00 0.00 0.00 1.82
501 502 2.570415 TCACCGTGCAATCCCTAAAA 57.430 45.000 0.00 0.00 0.00 1.52
502 503 2.570415 TTCACCGTGCAATCCCTAAA 57.430 45.000 0.00 0.00 0.00 1.85
503 504 2.026729 TGATTCACCGTGCAATCCCTAA 60.027 45.455 15.30 0.00 0.00 2.69
504 505 1.557371 TGATTCACCGTGCAATCCCTA 59.443 47.619 15.30 2.22 0.00 3.53
505 506 0.327924 TGATTCACCGTGCAATCCCT 59.672 50.000 15.30 0.00 0.00 4.20
506 507 1.334869 GATGATTCACCGTGCAATCCC 59.665 52.381 15.30 8.18 0.00 3.85
507 508 2.016318 TGATGATTCACCGTGCAATCC 58.984 47.619 15.30 6.91 0.00 3.01
508 509 2.540361 GCTGATGATTCACCGTGCAATC 60.540 50.000 12.87 12.87 0.00 2.67
509 510 1.402968 GCTGATGATTCACCGTGCAAT 59.597 47.619 0.00 0.00 0.00 3.56
562 565 6.796785 ATTTTTATACTGCTTTGGATGGCT 57.203 33.333 0.00 0.00 0.00 4.75
573 576 5.296780 TGCTGGAGCTGTATTTTTATACTGC 59.703 40.000 15.19 15.19 45.98 4.40
574 577 6.925610 TGCTGGAGCTGTATTTTTATACTG 57.074 37.500 0.00 0.00 42.66 2.74
575 578 7.229506 GGATTGCTGGAGCTGTATTTTTATACT 59.770 37.037 0.00 0.00 42.66 2.12
576 579 7.013274 TGGATTGCTGGAGCTGTATTTTTATAC 59.987 37.037 0.00 0.00 42.66 1.47
577 580 7.059788 TGGATTGCTGGAGCTGTATTTTTATA 58.940 34.615 0.00 0.00 42.66 0.98
580 583 4.088634 TGGATTGCTGGAGCTGTATTTTT 58.911 39.130 0.00 0.00 42.66 1.94
754 770 1.518302 GAGGCTTCCTCGGTTCCTC 59.482 63.158 0.00 0.00 41.08 3.71
755 771 3.715015 GAGGCTTCCTCGGTTCCT 58.285 61.111 0.00 0.00 41.08 3.36
893 925 2.282816 CCCGGTGCATGGTGGAAA 60.283 61.111 0.00 0.00 0.00 3.13
913 947 5.277857 TCTTCTGTTTTCCTCGTCTTCTT 57.722 39.130 0.00 0.00 0.00 2.52
933 967 0.618968 ACCGCCTGATTCTCCCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
934 968 0.462759 CACCGCCTGATTCTCCCTTC 60.463 60.000 0.00 0.00 0.00 3.46
935 969 1.604378 CACCGCCTGATTCTCCCTT 59.396 57.895 0.00 0.00 0.00 3.95
939 973 0.250513 ACTTCCACCGCCTGATTCTC 59.749 55.000 0.00 0.00 0.00 2.87
940 974 1.482593 CTACTTCCACCGCCTGATTCT 59.517 52.381 0.00 0.00 0.00 2.40
943 977 1.264749 TGCTACTTCCACCGCCTGAT 61.265 55.000 0.00 0.00 0.00 2.90
944 978 1.911269 TGCTACTTCCACCGCCTGA 60.911 57.895 0.00 0.00 0.00 3.86
945 979 1.741770 GTGCTACTTCCACCGCCTG 60.742 63.158 0.00 0.00 0.00 4.85
946 980 2.663196 GTGCTACTTCCACCGCCT 59.337 61.111 0.00 0.00 0.00 5.52
947 981 2.813908 CGTGCTACTTCCACCGCC 60.814 66.667 0.00 0.00 0.00 6.13
949 983 1.007336 GTGTCGTGCTACTTCCACCG 61.007 60.000 0.00 0.00 0.00 4.94
950 984 1.007336 CGTGTCGTGCTACTTCCACC 61.007 60.000 0.00 0.00 0.00 4.61
951 985 1.007336 CCGTGTCGTGCTACTTCCAC 61.007 60.000 0.00 0.00 0.00 4.02
952 986 1.174078 TCCGTGTCGTGCTACTTCCA 61.174 55.000 0.00 0.00 0.00 3.53
953 987 0.456312 CTCCGTGTCGTGCTACTTCC 60.456 60.000 0.00 0.00 0.00 3.46
954 988 0.456312 CCTCCGTGTCGTGCTACTTC 60.456 60.000 0.00 0.00 0.00 3.01
955 989 0.892358 TCCTCCGTGTCGTGCTACTT 60.892 55.000 0.00 0.00 0.00 2.24
956 990 1.303074 TCCTCCGTGTCGTGCTACT 60.303 57.895 0.00 0.00 0.00 2.57
957 991 1.136984 CTCCTCCGTGTCGTGCTAC 59.863 63.158 0.00 0.00 0.00 3.58
958 992 2.697761 GCTCCTCCGTGTCGTGCTA 61.698 63.158 0.00 0.00 0.00 3.49
959 993 4.057428 GCTCCTCCGTGTCGTGCT 62.057 66.667 0.00 0.00 0.00 4.40
1092 1348 1.446792 CACGTCCAGCTGCTCGAAT 60.447 57.895 26.69 9.81 0.00 3.34
1304 1560 1.331756 CAGTTCGCTGCAGACAAACTT 59.668 47.619 20.43 5.40 38.53 2.66
1313 1569 2.492088 ACTAGTACATCAGTTCGCTGCA 59.508 45.455 0.00 0.00 44.62 4.41
1316 1572 2.492088 TGCACTAGTACATCAGTTCGCT 59.508 45.455 0.00 0.00 0.00 4.93
1320 1576 5.105716 CCAGTAGTGCACTAGTACATCAGTT 60.106 44.000 29.26 2.88 37.61 3.16
1323 1579 4.595986 TCCAGTAGTGCACTAGTACATCA 58.404 43.478 29.26 11.97 37.61 3.07
1325 1581 5.069251 GGATTCCAGTAGTGCACTAGTACAT 59.931 44.000 29.26 21.17 37.61 2.29
1326 1582 4.401519 GGATTCCAGTAGTGCACTAGTACA 59.598 45.833 29.26 17.84 37.61 2.90
1329 1585 3.195825 GTGGATTCCAGTAGTGCACTAGT 59.804 47.826 26.70 26.04 34.98 2.57
1333 1589 1.003118 TGGTGGATTCCAGTAGTGCAC 59.997 52.381 9.40 9.40 32.34 4.57
1342 1598 1.002659 CAACGGTACTGGTGGATTCCA 59.997 52.381 12.23 0.00 36.00 3.53
1343 1599 1.677820 CCAACGGTACTGGTGGATTCC 60.678 57.143 31.87 0.00 0.00 3.01
1345 1601 0.322187 GCCAACGGTACTGGTGGATT 60.322 55.000 37.93 5.80 36.24 3.01
1346 1602 1.198759 AGCCAACGGTACTGGTGGAT 61.199 55.000 37.93 31.53 36.24 3.41
1347 1603 1.412453 AAGCCAACGGTACTGGTGGA 61.412 55.000 37.93 0.00 36.24 4.02
1348 1604 0.953960 GAAGCCAACGGTACTGGTGG 60.954 60.000 31.26 31.26 36.24 4.61
1349 1605 0.953960 GGAAGCCAACGGTACTGGTG 60.954 60.000 13.14 13.14 36.24 4.17
1350 1606 1.125711 AGGAAGCCAACGGTACTGGT 61.126 55.000 6.65 0.00 36.24 4.00
1351 1607 0.673644 CAGGAAGCCAACGGTACTGG 60.674 60.000 6.65 0.55 36.99 4.00
1352 1608 0.320374 TCAGGAAGCCAACGGTACTG 59.680 55.000 0.00 0.00 0.00 2.74
1353 1609 0.608640 CTCAGGAAGCCAACGGTACT 59.391 55.000 0.00 0.00 0.00 2.73
1354 1610 1.019805 GCTCAGGAAGCCAACGGTAC 61.020 60.000 0.00 0.00 45.92 3.34
1355 1611 1.295423 GCTCAGGAAGCCAACGGTA 59.705 57.895 0.00 0.00 45.92 4.02
1356 1612 2.032681 GCTCAGGAAGCCAACGGT 59.967 61.111 0.00 0.00 45.92 4.83
1367 1623 0.879765 CAGACAAAGCCAAGCTCAGG 59.120 55.000 0.86 0.86 38.25 3.86
1375 1631 4.381505 GGAAACACTTTTCAGACAAAGCCA 60.382 41.667 0.00 0.00 42.72 4.75
1382 1638 2.034685 GGCCTGGAAACACTTTTCAGAC 59.965 50.000 0.00 0.00 42.72 3.51
1383 1639 2.306847 GGCCTGGAAACACTTTTCAGA 58.693 47.619 0.00 0.00 42.72 3.27
1388 1644 1.402787 CTGTGGCCTGGAAACACTTT 58.597 50.000 3.32 0.00 36.16 2.66
1405 1668 4.307443 TCATGATTCGTACTGTAGGCTG 57.693 45.455 0.00 0.00 0.00 4.85
1406 1669 5.069119 TGATTCATGATTCGTACTGTAGGCT 59.931 40.000 11.83 0.00 0.00 4.58
1407 1670 5.289595 TGATTCATGATTCGTACTGTAGGC 58.710 41.667 11.83 0.00 0.00 3.93
1408 1671 6.756542 TGTTGATTCATGATTCGTACTGTAGG 59.243 38.462 11.83 1.20 0.00 3.18
1409 1672 7.755582 TGTTGATTCATGATTCGTACTGTAG 57.244 36.000 11.83 0.00 0.00 2.74
1410 1673 8.716646 ATTGTTGATTCATGATTCGTACTGTA 57.283 30.769 11.83 0.00 0.00 2.74
1411 1674 7.615582 ATTGTTGATTCATGATTCGTACTGT 57.384 32.000 11.83 0.00 0.00 3.55
1412 1675 8.791605 CAAATTGTTGATTCATGATTCGTACTG 58.208 33.333 11.83 4.97 36.83 2.74
1413 1676 8.729756 TCAAATTGTTGATTCATGATTCGTACT 58.270 29.630 11.83 0.00 38.88 2.73
1414 1677 8.894409 TCAAATTGTTGATTCATGATTCGTAC 57.106 30.769 11.83 12.09 38.88 3.67
1429 1736 6.497785 AGAGAGAGAAGCATCAAATTGTTG 57.502 37.500 0.00 0.00 35.95 3.33
1435 1742 5.716228 AGAGAGAAGAGAGAGAAGCATCAAA 59.284 40.000 0.00 0.00 0.00 2.69
1436 1743 5.263599 AGAGAGAAGAGAGAGAAGCATCAA 58.736 41.667 0.00 0.00 0.00 2.57
1442 1749 6.209391 ACCAAAAGAGAGAGAAGAGAGAGAAG 59.791 42.308 0.00 0.00 0.00 2.85
1443 1750 6.074648 ACCAAAAGAGAGAGAAGAGAGAGAA 58.925 40.000 0.00 0.00 0.00 2.87
1444 1751 5.640147 ACCAAAAGAGAGAGAAGAGAGAGA 58.360 41.667 0.00 0.00 0.00 3.10
1445 1752 5.982890 ACCAAAAGAGAGAGAAGAGAGAG 57.017 43.478 0.00 0.00 0.00 3.20
1446 1753 5.510520 GCAACCAAAAGAGAGAGAAGAGAGA 60.511 44.000 0.00 0.00 0.00 3.10
1447 1754 4.690280 GCAACCAAAAGAGAGAGAAGAGAG 59.310 45.833 0.00 0.00 0.00 3.20
1448 1755 4.101585 TGCAACCAAAAGAGAGAGAAGAGA 59.898 41.667 0.00 0.00 0.00 3.10
1449 1756 4.384056 TGCAACCAAAAGAGAGAGAAGAG 58.616 43.478 0.00 0.00 0.00 2.85
1450 1757 4.384056 CTGCAACCAAAAGAGAGAGAAGA 58.616 43.478 0.00 0.00 0.00 2.87
1451 1758 3.501445 CCTGCAACCAAAAGAGAGAGAAG 59.499 47.826 0.00 0.00 0.00 2.85
1458 1765 1.532868 CGTCTCCTGCAACCAAAAGAG 59.467 52.381 0.00 0.00 0.00 2.85
1592 1907 5.988287 TGTGTCATTGATATAGAAGGCACA 58.012 37.500 0.00 0.00 0.00 4.57
1655 1980 0.962489 AGGTGACCTCGACAAGTCAG 59.038 55.000 0.00 0.00 43.36 3.51
1664 1989 0.389391 ATTCGGCATAGGTGACCTCG 59.611 55.000 7.77 5.64 34.61 4.63
1733 2058 0.614812 ATTGGCAATCCACCCTTTGC 59.385 50.000 6.96 0.00 43.33 3.68
1788 2117 3.235200 ACAGCAGGAGAGAACTTGTAGT 58.765 45.455 0.00 0.00 0.00 2.73
1857 2828 2.094078 AGCAAACAGAAAGCAAAGCACA 60.094 40.909 0.00 0.00 0.00 4.57
1899 2870 3.561725 AGCGTCTTCTTGAAAACTTCCAG 59.438 43.478 0.00 0.00 0.00 3.86
1992 2968 0.112995 TGTTGGGCTCTTGCAGGAAT 59.887 50.000 0.00 0.00 41.91 3.01
2049 3025 7.972277 CAGAAAAATTACTTGCTATGCAGATGT 59.028 33.333 0.00 0.00 40.61 3.06
2122 3098 1.021920 GCAGGGGAGAAACTCGAAGC 61.022 60.000 0.00 0.00 0.00 3.86
2124 3100 0.034896 GTGCAGGGGAGAAACTCGAA 59.965 55.000 0.00 0.00 0.00 3.71
2129 3105 0.329596 AGATGGTGCAGGGGAGAAAC 59.670 55.000 0.00 0.00 0.00 2.78
2149 3125 7.066284 CCATGAAAATTCTACAGTACCTCCAAG 59.934 40.741 0.00 0.00 0.00 3.61
2151 3127 6.012858 ACCATGAAAATTCTACAGTACCTCCA 60.013 38.462 0.00 0.00 0.00 3.86
2162 3138 6.839124 AGCACATGAACCATGAAAATTCTA 57.161 33.333 13.22 0.00 43.81 2.10
2188 3164 7.113684 GTCTAAATATGATCTCGTGCAGTACAC 59.886 40.741 0.00 0.00 46.45 2.90
2236 3212 4.738252 TGAATCGTCGTCTGATAAAATCCG 59.262 41.667 0.00 0.00 0.00 4.18
2250 3226 2.416547 AGTTGGAAATGCTGAATCGTCG 59.583 45.455 0.00 0.00 0.00 5.12
2612 3589 3.198409 TGGAGATGTCATTGCGCTATT 57.802 42.857 9.73 0.00 0.00 1.73
2767 3745 7.712639 TCCTTAAGAATCACAGCTGTATTCATC 59.287 37.037 29.84 20.86 33.06 2.92
2877 3855 3.945285 TGACTTGGCGAAAGAACTCTTTT 59.055 39.130 6.18 0.00 45.37 2.27
2950 3928 4.125703 CACTTCCTGCCTAATGACAGATC 58.874 47.826 0.00 0.00 35.90 2.75
2957 3935 2.947652 CACATCCACTTCCTGCCTAATG 59.052 50.000 0.00 0.00 0.00 1.90
2976 3954 5.867174 GGAAGGTAAACATAACAAATGGCAC 59.133 40.000 0.00 0.00 0.00 5.01
2978 3956 6.280855 AGGAAGGTAAACATAACAAATGGC 57.719 37.500 0.00 0.00 0.00 4.40
3057 4035 5.851047 ACATTTTACGTACTCCGAAAAGG 57.149 39.130 0.00 0.00 40.70 3.11
3159 4146 2.602211 CGCTGAACTGCTCATAAGACAG 59.398 50.000 0.00 0.00 34.67 3.51
3264 4251 2.490509 GTCAAGTAATTTGGAACGGGGG 59.509 50.000 0.00 0.00 37.39 5.40
3265 4252 3.418047 AGTCAAGTAATTTGGAACGGGG 58.582 45.455 0.00 0.00 37.39 5.73
3266 4253 5.009210 TGAAAGTCAAGTAATTTGGAACGGG 59.991 40.000 0.00 0.00 37.39 5.28
3267 4254 6.067263 TGAAAGTCAAGTAATTTGGAACGG 57.933 37.500 0.00 0.00 37.39 4.44
3268 4255 8.479280 CAAATGAAAGTCAAGTAATTTGGAACG 58.521 33.333 0.00 0.00 37.39 3.95
3269 4256 9.313118 ACAAATGAAAGTCAAGTAATTTGGAAC 57.687 29.630 9.85 0.00 38.63 3.62
3270 4257 9.528018 GACAAATGAAAGTCAAGTAATTTGGAA 57.472 29.630 9.85 0.00 38.63 3.53
3271 4258 8.912988 AGACAAATGAAAGTCAAGTAATTTGGA 58.087 29.630 9.85 0.00 38.63 3.53
3278 4265 9.569167 CGTATCTAGACAAATGAAAGTCAAGTA 57.431 33.333 0.00 0.00 37.23 2.24
3279 4266 8.304596 TCGTATCTAGACAAATGAAAGTCAAGT 58.695 33.333 0.00 0.00 37.23 3.16
3280 4267 8.689251 TCGTATCTAGACAAATGAAAGTCAAG 57.311 34.615 0.00 0.00 37.23 3.02
3281 4268 9.653287 ATTCGTATCTAGACAAATGAAAGTCAA 57.347 29.630 0.00 0.00 37.23 3.18
3282 4269 9.087424 CATTCGTATCTAGACAAATGAAAGTCA 57.913 33.333 0.00 0.00 37.23 3.41
3283 4270 9.088512 ACATTCGTATCTAGACAAATGAAAGTC 57.911 33.333 18.03 0.00 35.02 3.01
3315 4302 8.618677 CGGATGTATCTAGACACTAAACAAGTA 58.381 37.037 2.29 0.00 35.76 2.24
3316 4303 7.122353 ACGGATGTATCTAGACACTAAACAAGT 59.878 37.037 2.29 0.00 39.81 3.16
3317 4304 7.481642 ACGGATGTATCTAGACACTAAACAAG 58.518 38.462 2.29 0.00 30.52 3.16
3318 4305 7.400599 ACGGATGTATCTAGACACTAAACAA 57.599 36.000 2.29 0.00 30.52 2.83
3319 4306 8.687292 ATACGGATGTATCTAGACACTAAACA 57.313 34.615 2.29 0.00 36.56 2.83
3333 4320 7.093727 CCTCCATTTGTCTAGATACGGATGTAT 60.094 40.741 0.00 0.00 43.97 2.29
3334 4321 6.208797 CCTCCATTTGTCTAGATACGGATGTA 59.791 42.308 0.00 0.00 34.45 2.29
3335 4322 5.011125 CCTCCATTTGTCTAGATACGGATGT 59.989 44.000 0.00 0.00 0.00 3.06
3336 4323 5.011125 ACCTCCATTTGTCTAGATACGGATG 59.989 44.000 0.00 0.00 0.00 3.51
3337 4324 5.148502 ACCTCCATTTGTCTAGATACGGAT 58.851 41.667 0.00 0.00 0.00 4.18
3338 4325 4.543689 ACCTCCATTTGTCTAGATACGGA 58.456 43.478 0.00 0.00 0.00 4.69
3339 4326 4.341235 TGACCTCCATTTGTCTAGATACGG 59.659 45.833 0.00 0.00 32.67 4.02
3340 4327 5.515797 TGACCTCCATTTGTCTAGATACG 57.484 43.478 0.00 0.00 32.67 3.06
3341 4328 6.879400 ACTTGACCTCCATTTGTCTAGATAC 58.121 40.000 0.00 0.00 37.64 2.24
3342 4329 8.603898 TTACTTGACCTCCATTTGTCTAGATA 57.396 34.615 0.00 0.00 37.64 1.98
3343 4330 7.496346 TTACTTGACCTCCATTTGTCTAGAT 57.504 36.000 0.00 0.00 37.64 1.98
3344 4331 6.928348 TTACTTGACCTCCATTTGTCTAGA 57.072 37.500 7.83 0.00 37.64 2.43
3345 4332 8.454106 CAAATTACTTGACCTCCATTTGTCTAG 58.546 37.037 0.00 0.00 39.31 2.43
3346 4333 7.393234 CCAAATTACTTGACCTCCATTTGTCTA 59.607 37.037 0.00 0.00 37.17 2.59
3347 4334 6.209391 CCAAATTACTTGACCTCCATTTGTCT 59.791 38.462 0.00 0.00 37.17 3.41
3348 4335 6.208599 TCCAAATTACTTGACCTCCATTTGTC 59.791 38.462 0.00 0.00 37.17 3.18
3349 4336 6.074648 TCCAAATTACTTGACCTCCATTTGT 58.925 36.000 0.00 0.00 37.17 2.83
3350 4337 6.588719 TCCAAATTACTTGACCTCCATTTG 57.411 37.500 0.00 0.00 37.17 2.32
3351 4338 6.294508 CGTTCCAAATTACTTGACCTCCATTT 60.295 38.462 0.00 0.00 37.17 2.32
3352 4339 5.183140 CGTTCCAAATTACTTGACCTCCATT 59.817 40.000 0.00 0.00 37.17 3.16
3353 4340 4.700213 CGTTCCAAATTACTTGACCTCCAT 59.300 41.667 0.00 0.00 37.17 3.41
3354 4341 4.069304 CGTTCCAAATTACTTGACCTCCA 58.931 43.478 0.00 0.00 37.17 3.86
3355 4342 3.439129 CCGTTCCAAATTACTTGACCTCC 59.561 47.826 0.00 0.00 37.17 4.30
3356 4343 4.320870 TCCGTTCCAAATTACTTGACCTC 58.679 43.478 0.00 0.00 37.17 3.85
3357 4344 4.324267 CTCCGTTCCAAATTACTTGACCT 58.676 43.478 0.00 0.00 37.17 3.85
3358 4345 3.439129 CCTCCGTTCCAAATTACTTGACC 59.561 47.826 0.00 0.00 37.17 4.02
3359 4346 3.439129 CCCTCCGTTCCAAATTACTTGAC 59.561 47.826 0.00 0.00 37.17 3.18
3360 4347 3.328343 TCCCTCCGTTCCAAATTACTTGA 59.672 43.478 0.00 0.00 37.17 3.02
3361 4348 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3362 4349 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3363 4350 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3364 4351 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3365 4352 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
3366 4353 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
3367 4354 5.368523 TGATAATACTCCCTCCGTTCCAAAT 59.631 40.000 0.00 0.00 0.00 2.32
3368 4355 4.717778 TGATAATACTCCCTCCGTTCCAAA 59.282 41.667 0.00 0.00 0.00 3.28
3369 4356 4.291792 TGATAATACTCCCTCCGTTCCAA 58.708 43.478 0.00 0.00 0.00 3.53
3370 4357 3.918566 TGATAATACTCCCTCCGTTCCA 58.081 45.455 0.00 0.00 0.00 3.53
3371 4358 4.283722 ACATGATAATACTCCCTCCGTTCC 59.716 45.833 0.00 0.00 0.00 3.62
3372 4359 5.470047 ACATGATAATACTCCCTCCGTTC 57.530 43.478 0.00 0.00 0.00 3.95
3373 4360 4.283722 GGACATGATAATACTCCCTCCGTT 59.716 45.833 0.00 0.00 0.00 4.44
3374 4361 3.833070 GGACATGATAATACTCCCTCCGT 59.167 47.826 0.00 0.00 0.00 4.69
3375 4362 4.090090 AGGACATGATAATACTCCCTCCG 58.910 47.826 0.00 0.00 0.00 4.63
3376 4363 7.455008 TCTTAAGGACATGATAATACTCCCTCC 59.545 40.741 0.00 0.00 0.00 4.30
3377 4364 8.423906 TCTTAAGGACATGATAATACTCCCTC 57.576 38.462 0.00 0.00 0.00 4.30
3378 4365 8.980832 ATCTTAAGGACATGATAATACTCCCT 57.019 34.615 0.00 0.00 0.00 4.20
3548 4535 7.122650 CACAGTTAACCATGGGAAAAGATACAT 59.877 37.037 18.09 0.00 0.00 2.29
3551 4538 6.785076 TCACAGTTAACCATGGGAAAAGATA 58.215 36.000 18.09 0.00 0.00 1.98
3693 4680 6.716628 ACAATCCATGACTTTACATTGACTGT 59.283 34.615 0.00 0.00 42.13 3.55
3816 5175 2.095853 AGTTGTGAGTTGTCTGCGTTTG 59.904 45.455 0.00 0.00 0.00 2.93
3820 5179 1.933181 TCAAGTTGTGAGTTGTCTGCG 59.067 47.619 2.11 0.00 37.45 5.18
3866 5225 3.135348 TCCATTGATTCTGGCACTAGAGG 59.865 47.826 0.00 0.00 33.56 3.69
4030 5393 2.699846 ACAAAAGGCAATTTGGAGCAGA 59.300 40.909 16.72 0.00 43.10 4.26
4102 5465 7.173419 GTGATGTATATTACAATCGATTGGCG 58.827 38.462 34.69 16.14 42.76 5.69
4122 5485 7.369607 TGTGTTAAGTGATTTCAATGGTGATG 58.630 34.615 0.00 0.00 32.48 3.07
4155 5518 6.880529 TGTGATCAGCAATCAGAGTTCAAATA 59.119 34.615 0.00 0.00 45.06 1.40
4219 5596 3.627577 CAGTAATGCCCAAGCGAATAACT 59.372 43.478 0.00 0.00 44.31 2.24
4220 5597 3.377172 ACAGTAATGCCCAAGCGAATAAC 59.623 43.478 0.00 0.00 44.31 1.89
4381 5777 0.594796 CCTTGTTTTCCTGCGCACAC 60.595 55.000 5.66 0.00 0.00 3.82
4506 5908 1.959282 CTGGAAGCCTTGAAGCAAACT 59.041 47.619 0.00 0.00 34.23 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.