Multiple sequence alignment - TraesCS1B01G263700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G263700 chr1B 100.000 6094 0 0 1 6094 464145962 464152055 0.000000e+00 11254.0
1 TraesCS1B01G263700 chr1B 86.176 1765 192 22 3409 5170 464479377 464481092 0.000000e+00 1860.0
2 TraesCS1B01G263700 chr1B 86.491 1251 122 25 1723 2962 464477680 464478894 0.000000e+00 1330.0
3 TraesCS1B01G263700 chr1B 90.749 227 21 0 985 1211 464477379 464477605 2.760000e-78 303.0
4 TraesCS1B01G263700 chr1B 78.926 242 51 0 3745 3986 464134617 464134858 1.360000e-36 165.0
5 TraesCS1B01G263700 chr1B 83.495 103 17 0 1098 1200 464126108 464126210 5.030000e-16 97.1
6 TraesCS1B01G263700 chr1B 76.364 165 39 0 1751 1915 464130059 464130223 8.410000e-14 89.8
7 TraesCS1B01G263700 chr1B 100.000 37 0 0 5533 5569 289096922 289096958 1.100000e-07 69.4
8 TraesCS1B01G263700 chr1D 93.485 5065 238 42 696 5724 345725861 345720853 0.000000e+00 7441.0
9 TraesCS1B01G263700 chr1D 86.229 1750 182 31 3418 5159 345717119 345715421 0.000000e+00 1842.0
10 TraesCS1B01G263700 chr1D 87.285 1282 125 25 1695 2965 345718931 345717677 0.000000e+00 1430.0
11 TraesCS1B01G263700 chr1D 86.107 619 71 12 1 616 345726576 345725970 0.000000e+00 652.0
12 TraesCS1B01G263700 chr1D 92.810 306 20 2 5717 6022 334450415 334450112 5.610000e-120 442.0
13 TraesCS1B01G263700 chr1D 89.754 244 24 1 980 1222 345719242 345718999 1.650000e-80 311.0
14 TraesCS1B01G263700 chr1D 80.165 242 48 0 3745 3986 345811977 345811736 1.350000e-41 182.0
15 TraesCS1B01G263700 chr1D 85.577 104 15 0 1098 1201 345820200 345820097 6.460000e-20 110.0
16 TraesCS1B01G263700 chr1D 92.857 70 4 1 6025 6094 345720861 345720793 3.890000e-17 100.0
17 TraesCS1B01G263700 chr1D 76.536 179 42 0 1737 1915 345816334 345816156 1.400000e-16 99.0
18 TraesCS1B01G263700 chr1D 95.745 47 2 0 651 697 345725958 345725912 6.550000e-10 76.8
19 TraesCS1B01G263700 chr1A 91.899 2802 142 41 696 3454 445939125 445936366 0.000000e+00 3838.0
20 TraesCS1B01G263700 chr1A 93.740 1917 95 7 3361 5262 445936409 445934503 0.000000e+00 2852.0
21 TraesCS1B01G263700 chr1A 88.135 1753 156 27 3422 5170 445919505 445917801 0.000000e+00 2037.0
22 TraesCS1B01G263700 chr1A 85.069 576 56 20 1702 2248 445930798 445930224 1.480000e-155 560.0
23 TraesCS1B01G263700 chr1A 92.126 381 30 0 2234 2614 445929869 445929489 6.950000e-149 538.0
24 TraesCS1B01G263700 chr1A 92.278 259 20 0 2704 2962 445920288 445920030 9.650000e-98 368.0
25 TraesCS1B01G263700 chr1A 89.754 244 24 1 980 1222 445931096 445930853 1.650000e-80 311.0
26 TraesCS1B01G263700 chr1A 85.169 236 32 1 393 625 445939458 445939223 7.890000e-59 239.0
27 TraesCS1B01G263700 chr1A 79.339 242 50 0 3745 3986 446125037 446124796 2.920000e-38 171.0
28 TraesCS1B01G263700 chr1A 90.323 93 9 0 1110 1202 448897721 448897813 8.290000e-24 122.0
29 TraesCS1B01G263700 chr1A 81.429 140 23 2 1062 1201 446132381 446132245 1.800000e-20 111.0
30 TraesCS1B01G263700 chr1A 77.095 179 41 0 1737 1915 446129486 446129308 3.000000e-18 104.0
31 TraesCS1B01G263700 chr2D 92.381 315 22 2 5708 6022 482892783 482892471 1.200000e-121 448.0
32 TraesCS1B01G263700 chr6D 91.531 307 25 1 5717 6023 386276454 386276149 7.300000e-114 422.0
33 TraesCS1B01G263700 chr6B 90.735 313 23 6 5713 6023 473058024 473057716 4.400000e-111 412.0
34 TraesCS1B01G263700 chr5D 89.610 308 29 3 5717 6023 242638176 242637871 7.410000e-104 388.0
35 TraesCS1B01G263700 chr5B 89.103 312 32 1 5714 6023 207575973 207576284 2.660000e-103 387.0
36 TraesCS1B01G263700 chr3A 88.608 316 35 1 5708 6023 291788329 291788643 3.450000e-102 383.0
37 TraesCS1B01G263700 chr2B 88.535 314 36 0 5714 6027 26119971 26120284 1.240000e-101 381.0
38 TraesCS1B01G263700 chr2A 88.571 315 34 2 5725 6037 241962694 241962380 1.240000e-101 381.0
39 TraesCS1B01G263700 chr4D 86.607 112 14 1 408 519 341920823 341920713 8.290000e-24 122.0
40 TraesCS1B01G263700 chr3B 84.211 57 9 0 5305 5361 761958087 761958031 8.530000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G263700 chr1B 464145962 464152055 6093 False 11254.000000 11254 100.000000 1 6094 1 chr1B.!!$F3 6093
1 TraesCS1B01G263700 chr1B 464477379 464481092 3713 False 1164.333333 1860 87.805333 985 5170 3 chr1B.!!$F5 4185
2 TraesCS1B01G263700 chr1D 345715421 345726576 11155 True 1693.257143 7441 90.208857 1 6094 7 chr1D.!!$R3 6093
3 TraesCS1B01G263700 chr1A 445929489 445939458 9969 True 1389.666667 3838 89.626167 393 5262 6 chr1A.!!$R3 4869
4 TraesCS1B01G263700 chr1A 445917801 445920288 2487 True 1202.500000 2037 90.206500 2704 5170 2 chr1A.!!$R2 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.167470 CCGCAGTAACTTCGACGAGA 59.833 55.0 0.00 0.00 0.00 4.04 F
1264 1346 0.102300 TCTGTACCATGTCATCGCCG 59.898 55.0 0.00 0.00 0.00 6.46 F
2729 2851 0.304098 GCTTTCTCTAGCATGCGCAG 59.696 55.0 18.32 13.73 42.27 5.18 F
4063 4488 0.709467 TTACACGGTTTTCGATCGCG 59.291 50.0 11.09 10.41 42.43 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 1443 0.179111 GACCTGACCGATGCGATCAA 60.179 55.000 0.00 0.0 0.00 2.57 R
2846 2968 2.184167 CCAAACTTGGGTGTCGCGT 61.184 57.895 5.77 0.0 44.70 6.01 R
4218 4643 0.917533 AGCTTGCATCCCTGTCAGAT 59.082 50.000 0.00 0.0 0.00 2.90 R
5377 5890 0.106708 CACTATGTGGACCGATGGGG 59.893 60.000 0.00 0.0 43.62 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.833227 TGCCACCCGCAGTAACTT 59.167 55.556 0.00 0.00 44.64 2.66
29 30 1.012486 CCACCCGCAGTAACTTCGAC 61.012 60.000 0.00 0.00 0.00 4.20
33 34 0.167470 CCGCAGTAACTTCGACGAGA 59.833 55.000 0.00 0.00 0.00 4.04
39 40 4.730903 GCAGTAACTTCGACGAGATCATGA 60.731 45.833 0.00 0.00 0.00 3.07
50 51 0.683973 AGATCATGACCGATGCCCTC 59.316 55.000 0.00 0.00 31.32 4.30
60 61 0.460109 CGATGCCCTCGTTGATGTCA 60.460 55.000 0.00 0.00 42.56 3.58
65 66 2.224281 TGCCCTCGTTGATGTCATATCC 60.224 50.000 0.00 0.00 0.00 2.59
66 67 2.677199 CCCTCGTTGATGTCATATCCG 58.323 52.381 0.00 0.00 0.00 4.18
68 69 2.035961 CCTCGTTGATGTCATATCCGGT 59.964 50.000 0.00 0.00 0.00 5.28
74 75 2.365293 TGATGTCATATCCGGTGTCAGG 59.635 50.000 0.00 0.00 0.00 3.86
75 76 2.153034 TGTCATATCCGGTGTCAGGA 57.847 50.000 0.00 0.00 42.69 3.86
89 90 0.461870 TCAGGAATGAACGCATCCCG 60.462 55.000 0.00 0.00 33.46 5.14
91 92 2.715624 GAATGAACGCATCCCGGC 59.284 61.111 0.00 0.00 42.52 6.13
128 129 0.391263 CCCACGTCAAGGCTACCTTC 60.391 60.000 0.00 0.00 42.67 3.46
132 133 0.809385 CGTCAAGGCTACCTTCGAGA 59.191 55.000 0.00 0.00 42.67 4.04
155 156 1.565390 AAGGCCAGGCAGCAGATACA 61.565 55.000 15.19 0.00 0.00 2.29
156 157 1.525535 GGCCAGGCAGCAGATACAG 60.526 63.158 15.19 0.00 0.00 2.74
169 170 1.482593 AGATACAGAAGGCAACGAGGG 59.517 52.381 0.00 0.00 46.39 4.30
170 171 1.207329 GATACAGAAGGCAACGAGGGT 59.793 52.381 0.00 0.00 46.39 4.34
194 196 1.160329 GCCATGACATGCTACCCGAC 61.160 60.000 10.10 0.00 0.00 4.79
203 205 2.494918 CTACCCGACGCCCTCTTG 59.505 66.667 0.00 0.00 0.00 3.02
216 218 2.351726 GCCCTCTTGTACTTACAATGCG 59.648 50.000 2.33 0.00 44.34 4.73
238 240 1.401552 TGACTCACAAGTTGCAACAGC 59.598 47.619 30.11 14.41 35.28 4.40
262 264 2.022240 GCCACATCCGAGGAGGTCTC 62.022 65.000 6.45 0.00 37.01 3.36
264 266 1.479709 CACATCCGAGGAGGTCTCTT 58.520 55.000 6.45 0.00 37.01 2.85
270 272 3.173965 TCCGAGGAGGTCTCTTCAAATT 58.826 45.455 10.08 0.00 40.30 1.82
271 273 4.350245 TCCGAGGAGGTCTCTTCAAATTA 58.650 43.478 10.08 0.00 40.30 1.40
272 274 4.159879 TCCGAGGAGGTCTCTTCAAATTAC 59.840 45.833 10.08 0.00 40.30 1.89
273 275 4.160626 CCGAGGAGGTCTCTTCAAATTACT 59.839 45.833 10.08 0.00 40.30 2.24
274 276 5.360144 CCGAGGAGGTCTCTTCAAATTACTA 59.640 44.000 10.08 0.00 40.30 1.82
275 277 6.267070 CGAGGAGGTCTCTTCAAATTACTAC 58.733 44.000 10.08 0.00 40.30 2.73
276 278 6.095720 CGAGGAGGTCTCTTCAAATTACTACT 59.904 42.308 10.08 0.00 40.30 2.57
277 279 7.282675 CGAGGAGGTCTCTTCAAATTACTACTA 59.717 40.741 10.08 0.00 40.30 1.82
278 280 9.138596 GAGGAGGTCTCTTCAAATTACTACTAT 57.861 37.037 5.40 0.00 39.38 2.12
279 281 9.138596 AGGAGGTCTCTTCAAATTACTACTATC 57.861 37.037 0.00 0.00 0.00 2.08
335 338 6.579292 TGTTTTACTGCAATGCACGTTAATAC 59.421 34.615 2.72 8.15 33.79 1.89
336 339 6.489127 TTTACTGCAATGCACGTTAATACT 57.511 33.333 2.72 0.00 33.79 2.12
475 481 9.849166 TTAATGCTGACAATGATATTATGCATG 57.151 29.630 10.16 0.00 38.41 4.06
477 483 6.905578 TGCTGACAATGATATTATGCATGTC 58.094 36.000 10.16 6.90 0.00 3.06
536 543 0.248661 CACCAGAGCGATGTAGACCG 60.249 60.000 0.00 0.00 0.00 4.79
549 556 4.729227 TGTAGACCGTTGAATAGATGCA 57.271 40.909 0.00 0.00 0.00 3.96
552 559 4.207891 AGACCGTTGAATAGATGCAGTT 57.792 40.909 0.00 0.00 0.00 3.16
588 595 8.656849 AGATTACTACGTGATGTTGAACATTTC 58.343 33.333 12.62 7.75 39.27 2.17
589 596 7.956420 TTACTACGTGATGTTGAACATTTCT 57.044 32.000 12.62 0.00 39.27 2.52
590 597 6.228273 ACTACGTGATGTTGAACATTTCTG 57.772 37.500 12.62 5.86 39.27 3.02
605 612 5.198207 ACATTTCTGAATGAGATGGATGCA 58.802 37.500 6.17 0.00 44.37 3.96
607 614 2.830104 TCTGAATGAGATGGATGCACG 58.170 47.619 0.00 0.00 0.00 5.34
630 637 3.451402 AAAAAGCCGGGAGTTATTCCT 57.549 42.857 2.18 0.00 45.98 3.36
631 638 2.711978 AAAGCCGGGAGTTATTCCTC 57.288 50.000 2.18 0.00 45.98 3.71
632 639 1.580059 AAGCCGGGAGTTATTCCTCA 58.420 50.000 2.18 0.00 45.98 3.86
633 640 1.123928 AGCCGGGAGTTATTCCTCAG 58.876 55.000 2.18 0.00 45.98 3.35
634 641 1.120530 GCCGGGAGTTATTCCTCAGA 58.879 55.000 2.18 0.00 45.98 3.27
635 642 1.485066 GCCGGGAGTTATTCCTCAGAA 59.515 52.381 2.18 0.00 45.98 3.02
636 643 2.093128 GCCGGGAGTTATTCCTCAGAAA 60.093 50.000 2.18 0.00 45.98 2.52
637 644 3.621461 GCCGGGAGTTATTCCTCAGAAAA 60.621 47.826 2.18 0.00 45.98 2.29
638 645 4.585879 CCGGGAGTTATTCCTCAGAAAAA 58.414 43.478 0.00 0.00 45.98 1.94
688 695 2.089936 GTGTCCGCGCATACGTTCA 61.090 57.895 8.75 0.00 42.83 3.18
707 770 3.908213 TCAAACGTGTCTGAATCGATGA 58.092 40.909 0.00 9.42 0.00 2.92
766 830 3.248029 GATGGATGCATCGGTCGC 58.752 61.111 20.15 6.77 0.00 5.19
840 910 4.771577 TCGTACCCCTATACAACTGTTTCA 59.228 41.667 0.00 0.00 0.00 2.69
850 920 4.184649 ACAACTGTTTCAAATCCCCTCT 57.815 40.909 0.00 0.00 0.00 3.69
996 1071 2.698855 AGTCGTAGTACCGCCTTCTA 57.301 50.000 0.00 0.00 0.00 2.10
1214 1289 0.601057 AAGGTAATTTGGTGCCGTGC 59.399 50.000 0.00 0.00 0.00 5.34
1228 1303 2.801631 CGTGCCCTCCTCCATCTCC 61.802 68.421 0.00 0.00 0.00 3.71
1229 1304 1.383803 GTGCCCTCCTCCATCTCCT 60.384 63.158 0.00 0.00 0.00 3.69
1250 1325 0.459063 CTCGTGCTGCATGCTCTGTA 60.459 55.000 20.33 5.95 43.37 2.74
1251 1326 0.737367 TCGTGCTGCATGCTCTGTAC 60.737 55.000 20.33 16.14 43.37 2.90
1253 1328 0.674581 GTGCTGCATGCTCTGTACCA 60.675 55.000 20.33 2.61 43.37 3.25
1264 1346 0.102300 TCTGTACCATGTCATCGCCG 59.898 55.000 0.00 0.00 0.00 6.46
1280 1362 0.601558 GCCGCCCAGTAATCGATCTA 59.398 55.000 0.00 0.00 0.00 1.98
1282 1364 1.067776 CCGCCCAGTAATCGATCTACC 60.068 57.143 0.00 0.00 0.00 3.18
1283 1365 1.401148 CGCCCAGTAATCGATCTACCG 60.401 57.143 0.00 0.18 0.00 4.02
1284 1366 1.884579 GCCCAGTAATCGATCTACCGA 59.115 52.381 0.00 0.00 43.16 4.69
1301 1383 4.891727 ATTACCTGGCCGCGCTCG 62.892 66.667 5.56 0.00 0.00 5.03
1358 1443 4.481930 TTTTGCGAATCGAATGTTCTGT 57.518 36.364 6.91 0.00 0.00 3.41
1395 1480 1.068832 TCGTGTTCGCTCGTGCATAC 61.069 55.000 10.43 7.09 39.64 2.39
1562 1650 5.151454 TCTCAGAGAGAAAAAGAGGAAGGT 58.849 41.667 0.00 0.00 35.59 3.50
1645 1733 1.535462 CCTTTGACTGCGTCGGATTTT 59.465 47.619 0.00 0.00 34.95 1.82
1646 1734 2.412847 CCTTTGACTGCGTCGGATTTTC 60.413 50.000 0.00 0.00 34.95 2.29
1647 1735 2.163818 TTGACTGCGTCGGATTTTCT 57.836 45.000 0.00 0.00 34.95 2.52
1648 1736 1.710013 TGACTGCGTCGGATTTTCTC 58.290 50.000 0.00 0.00 34.95 2.87
1649 1737 1.272490 TGACTGCGTCGGATTTTCTCT 59.728 47.619 0.00 0.00 34.95 3.10
1650 1738 1.921230 GACTGCGTCGGATTTTCTCTC 59.079 52.381 0.00 0.00 0.00 3.20
1656 1744 3.790789 GCGTCGGATTTTCTCTCTCTCTC 60.791 52.174 0.00 0.00 0.00 3.20
1700 1791 7.658575 ACTCTACTAGTAGTGCATTACTCTAGC 59.341 40.741 23.48 0.00 40.89 3.42
1959 2069 3.488553 GCCAAGCCACGAATTACCATTAC 60.489 47.826 0.00 0.00 0.00 1.89
2457 2573 0.597072 GTCACCGAGGAGTTCTTCGT 59.403 55.000 11.81 0.00 42.83 3.85
2580 2696 3.485431 CAGCACGGCAAGCTCTCG 61.485 66.667 0.00 0.00 41.14 4.04
2591 2707 3.242673 GGCAAGCTCTCGATTCAATTCAG 60.243 47.826 0.00 0.00 0.00 3.02
2729 2851 0.304098 GCTTTCTCTAGCATGCGCAG 59.696 55.000 18.32 13.73 42.27 5.18
2805 2927 2.296190 GGTGATCACTTCCAACAAACCC 59.704 50.000 24.50 0.02 0.00 4.11
2813 2935 2.329614 CCAACAAACCCTACGGCGG 61.330 63.158 13.24 0.00 0.00 6.13
2994 3117 3.979948 TGTGTCACTCATGCCAAAAATG 58.020 40.909 4.27 0.00 0.00 2.32
3100 3409 3.103911 GGAGTCCGCGTTCGTGTG 61.104 66.667 4.92 0.00 0.00 3.82
3179 3489 4.468153 CCAAGAACTTCCTAGAGGTAAGCT 59.532 45.833 0.00 0.00 36.34 3.74
3181 3491 3.949113 AGAACTTCCTAGAGGTAAGCTCG 59.051 47.826 0.00 0.00 36.34 5.03
3191 3505 3.067461 AGAGGTAAGCTCGAAGCAGTATG 59.933 47.826 9.09 0.00 45.56 2.39
3241 3558 7.005062 AGTTTGCGTGCTAATTTAGTATCTG 57.995 36.000 5.38 0.00 0.00 2.90
3350 3685 5.462530 TTTCACTGTCTACGAGGAATCAA 57.537 39.130 0.00 0.00 0.00 2.57
3353 3688 6.037786 TCACTGTCTACGAGGAATCAAAAT 57.962 37.500 0.00 0.00 0.00 1.82
3407 3820 7.998964 ACTCTTTTCTTCAGGTCCTAAATTGAA 59.001 33.333 0.00 0.00 0.00 2.69
3408 3821 8.760980 TCTTTTCTTCAGGTCCTAAATTGAAA 57.239 30.769 0.00 0.00 0.00 2.69
3409 3822 9.196139 TCTTTTCTTCAGGTCCTAAATTGAAAA 57.804 29.630 0.00 4.57 32.44 2.29
3410 3823 9.987272 CTTTTCTTCAGGTCCTAAATTGAAAAT 57.013 29.630 13.16 0.00 32.79 1.82
3412 3825 9.762933 TTTCTTCAGGTCCTAAATTGAAAATTG 57.237 29.630 0.00 0.00 0.00 2.32
3413 3826 8.704849 TCTTCAGGTCCTAAATTGAAAATTGA 57.295 30.769 0.00 0.00 0.00 2.57
3909 4326 4.282068 CAACAATGTGTATGCTATTCCGC 58.718 43.478 0.00 0.00 0.00 5.54
3991 4409 7.100409 CCAAGAAGTCCTAGAAGGTAAAGAAG 58.900 42.308 0.00 0.00 36.53 2.85
4009 4427 3.817647 AGAAGAAGTTCTGCATTCGCTTT 59.182 39.130 13.58 0.00 41.78 3.51
4010 4428 3.549299 AGAAGTTCTGCATTCGCTTTG 57.451 42.857 4.10 0.00 39.64 2.77
4040 4465 1.154413 GTGTGACAATGGCGCGAAG 60.154 57.895 12.10 0.00 0.00 3.79
4042 4467 1.154413 GTGACAATGGCGCGAAGTG 60.154 57.895 12.10 9.47 43.41 3.16
4063 4488 0.709467 TTACACGGTTTTCGATCGCG 59.291 50.000 11.09 10.41 42.43 5.87
4218 4643 4.346418 ACCAATTTGGCCAACATTTCACTA 59.654 37.500 20.35 0.00 42.67 2.74
4350 4777 7.337938 TCTCCATGTGCAGAGAATTTATGTTA 58.662 34.615 1.13 0.00 36.22 2.41
4598 5025 1.904144 TTGTCCGAGAGTTATTCGCG 58.096 50.000 0.00 0.00 46.86 5.87
4675 5102 3.703556 TGCAAATCACCCTGTTTTTCTGA 59.296 39.130 0.00 0.00 0.00 3.27
4879 5312 2.539338 GCGTCCTTGCCGACACAAA 61.539 57.895 0.00 0.00 32.74 2.83
5087 5520 2.582636 AGGGCCTGGACATAACAGATTT 59.417 45.455 4.50 0.00 38.20 2.17
5088 5521 2.952310 GGGCCTGGACATAACAGATTTC 59.048 50.000 0.00 0.00 38.20 2.17
5096 5529 8.424918 CCTGGACATAACAGATTTCTATAGTGT 58.575 37.037 0.00 0.00 38.20 3.55
5339 5852 2.040545 TCCAAAGCGGACCCTTAAATCA 59.959 45.455 0.00 0.00 39.64 2.57
5349 5862 1.409521 CCCTTAAATCACCCGCATCCA 60.410 52.381 0.00 0.00 0.00 3.41
5372 5885 2.049802 ATCGCGTTGTCCGAACGT 60.050 55.556 5.77 0.00 44.69 3.99
5377 5890 1.879562 GCGTTGTCCGAACGTGGTAC 61.880 60.000 9.25 0.00 44.69 3.34
5387 5900 1.891722 AACGTGGTACCCCATCGGTC 61.892 60.000 10.07 0.00 43.58 4.79
5415 5928 3.317430 AGTGGTCTAGACGTTCGTTTTCT 59.683 43.478 16.56 2.17 0.00 2.52
5493 6006 1.143277 ACCAAAATCCACCACGTACCA 59.857 47.619 0.00 0.00 0.00 3.25
5508 6021 0.328592 TACCACTCTCCTCGCTGTCT 59.671 55.000 0.00 0.00 0.00 3.41
5516 6029 0.037734 TCCTCGCTGTCTGTGTAGGA 59.962 55.000 0.00 0.00 33.39 2.94
5524 6037 0.460284 GTCTGTGTAGGATGTGGCGG 60.460 60.000 0.00 0.00 0.00 6.13
5541 6054 4.985409 GTGGCGGAAGACTAGAATGATTAG 59.015 45.833 0.00 0.00 42.42 1.73
5579 6092 3.577805 AGGCTGTTTAGACCACTTTGT 57.422 42.857 0.00 0.00 29.49 2.83
5616 6129 2.011540 AGCTACTAAGACCAAAGCGC 57.988 50.000 0.00 0.00 38.23 5.92
5624 6137 1.453155 AGACCAAAGCGCGAAATGAT 58.547 45.000 12.10 0.00 0.00 2.45
5668 6184 8.093659 ACCAAATGTTAATTACAAATGCCAAC 57.906 30.769 0.00 0.00 40.89 3.77
5693 6209 1.952367 GCTTGCTCACACCTGGCTTAT 60.952 52.381 0.00 0.00 0.00 1.73
5706 6222 3.305471 CCTGGCTTATAGTTAGTCGAGGC 60.305 52.174 0.00 0.00 0.00 4.70
5731 6247 6.925610 AAAAATTCAGGCTTTCTTTGGTTC 57.074 33.333 0.00 0.00 0.00 3.62
5732 6248 5.612725 AAATTCAGGCTTTCTTTGGTTCA 57.387 34.783 0.00 0.00 0.00 3.18
5733 6249 5.813513 AATTCAGGCTTTCTTTGGTTCAT 57.186 34.783 0.00 0.00 0.00 2.57
5734 6250 5.813513 ATTCAGGCTTTCTTTGGTTCATT 57.186 34.783 0.00 0.00 0.00 2.57
5735 6251 4.589216 TCAGGCTTTCTTTGGTTCATTG 57.411 40.909 0.00 0.00 0.00 2.82
5736 6252 3.321682 TCAGGCTTTCTTTGGTTCATTGG 59.678 43.478 0.00 0.00 0.00 3.16
5737 6253 3.321682 CAGGCTTTCTTTGGTTCATTGGA 59.678 43.478 0.00 0.00 0.00 3.53
5738 6254 4.020839 CAGGCTTTCTTTGGTTCATTGGAT 60.021 41.667 0.00 0.00 0.00 3.41
5739 6255 5.185635 CAGGCTTTCTTTGGTTCATTGGATA 59.814 40.000 0.00 0.00 0.00 2.59
5740 6256 5.420104 AGGCTTTCTTTGGTTCATTGGATAG 59.580 40.000 0.00 0.00 0.00 2.08
5741 6257 5.394553 GGCTTTCTTTGGTTCATTGGATAGG 60.395 44.000 0.00 0.00 0.00 2.57
5742 6258 5.418840 GCTTTCTTTGGTTCATTGGATAGGA 59.581 40.000 0.00 0.00 0.00 2.94
5743 6259 6.097412 GCTTTCTTTGGTTCATTGGATAGGAT 59.903 38.462 0.00 0.00 0.00 3.24
5744 6260 7.364144 GCTTTCTTTGGTTCATTGGATAGGATT 60.364 37.037 0.00 0.00 0.00 3.01
5745 6261 9.189156 CTTTCTTTGGTTCATTGGATAGGATTA 57.811 33.333 0.00 0.00 0.00 1.75
5746 6262 9.713684 TTTCTTTGGTTCATTGGATAGGATTAT 57.286 29.630 0.00 0.00 0.00 1.28
5747 6263 8.924511 TCTTTGGTTCATTGGATAGGATTATC 57.075 34.615 0.00 0.00 35.87 1.75
5748 6264 8.501904 TCTTTGGTTCATTGGATAGGATTATCA 58.498 33.333 0.00 0.00 37.92 2.15
5749 6265 8.463930 TTTGGTTCATTGGATAGGATTATCAC 57.536 34.615 0.00 0.00 37.92 3.06
5750 6266 7.147958 TGGTTCATTGGATAGGATTATCACA 57.852 36.000 0.00 0.00 37.92 3.58
5751 6267 7.581814 TGGTTCATTGGATAGGATTATCACAA 58.418 34.615 0.00 0.00 37.92 3.33
5752 6268 7.720957 TGGTTCATTGGATAGGATTATCACAAG 59.279 37.037 0.00 0.00 37.92 3.16
5753 6269 7.939039 GGTTCATTGGATAGGATTATCACAAGA 59.061 37.037 0.00 0.00 37.92 3.02
5754 6270 9.342308 GTTCATTGGATAGGATTATCACAAGAA 57.658 33.333 0.00 0.00 37.92 2.52
5781 6297 8.862550 AGAAAACTTGTTGAAAATGAGATGAC 57.137 30.769 0.00 0.00 0.00 3.06
5782 6298 8.469200 AGAAAACTTGTTGAAAATGAGATGACA 58.531 29.630 0.00 0.00 0.00 3.58
5783 6299 9.252962 GAAAACTTGTTGAAAATGAGATGACAT 57.747 29.630 0.00 0.00 0.00 3.06
5784 6300 8.583810 AAACTTGTTGAAAATGAGATGACATG 57.416 30.769 0.00 0.00 0.00 3.21
5785 6301 7.281040 ACTTGTTGAAAATGAGATGACATGT 57.719 32.000 0.00 0.00 0.00 3.21
5786 6302 8.394971 ACTTGTTGAAAATGAGATGACATGTA 57.605 30.769 0.00 0.00 0.00 2.29
5787 6303 9.017509 ACTTGTTGAAAATGAGATGACATGTAT 57.982 29.630 0.00 0.00 0.00 2.29
5788 6304 9.499585 CTTGTTGAAAATGAGATGACATGTATC 57.500 33.333 0.00 2.87 0.00 2.24
5789 6305 8.797350 TGTTGAAAATGAGATGACATGTATCT 57.203 30.769 14.05 14.05 37.59 1.98
5790 6306 8.886719 TGTTGAAAATGAGATGACATGTATCTC 58.113 33.333 24.04 24.04 46.82 2.75
5800 6316 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
5801 6317 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
5802 6318 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
5803 6319 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
5804 6320 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
5813 6329 9.828691 TCTCAAATCCTATGAGTATGATTAGGA 57.171 33.333 3.72 0.37 43.77 2.94
5820 6336 9.883293 TCCTATGAGTATGATTAGGAAAAGAGA 57.117 33.333 0.00 0.00 37.79 3.10
5824 6340 9.995003 ATGAGTATGATTAGGAAAAGAGATGTC 57.005 33.333 0.00 0.00 0.00 3.06
5825 6341 8.981659 TGAGTATGATTAGGAAAAGAGATGTCA 58.018 33.333 0.00 0.00 0.00 3.58
5826 6342 9.995003 GAGTATGATTAGGAAAAGAGATGTCAT 57.005 33.333 0.00 0.00 0.00 3.06
5830 6346 8.284945 TGATTAGGAAAAGAGATGTCATTTGG 57.715 34.615 0.00 0.00 0.00 3.28
5831 6347 7.890127 TGATTAGGAAAAGAGATGTCATTTGGT 59.110 33.333 0.00 0.00 0.00 3.67
5832 6348 8.655935 ATTAGGAAAAGAGATGTCATTTGGTT 57.344 30.769 0.00 0.00 0.00 3.67
5833 6349 6.581171 AGGAAAAGAGATGTCATTTGGTTC 57.419 37.500 0.00 0.00 0.00 3.62
5834 6350 6.070656 AGGAAAAGAGATGTCATTTGGTTCA 58.929 36.000 0.00 0.00 0.00 3.18
5835 6351 6.015940 AGGAAAAGAGATGTCATTTGGTTCAC 60.016 38.462 0.00 0.00 0.00 3.18
5836 6352 6.239008 GGAAAAGAGATGTCATTTGGTTCACA 60.239 38.462 0.00 0.00 0.00 3.58
5837 6353 6.906157 AAAGAGATGTCATTTGGTTCACAT 57.094 33.333 0.00 0.00 32.02 3.21
5838 6354 6.506500 AAGAGATGTCATTTGGTTCACATC 57.493 37.500 3.21 3.21 43.70 3.06
5839 6355 5.563592 AGAGATGTCATTTGGTTCACATCA 58.436 37.500 12.21 0.00 45.13 3.07
5840 6356 6.185511 AGAGATGTCATTTGGTTCACATCAT 58.814 36.000 12.21 0.00 45.13 2.45
5841 6357 7.341030 AGAGATGTCATTTGGTTCACATCATA 58.659 34.615 12.21 0.00 45.13 2.15
5842 6358 7.498239 AGAGATGTCATTTGGTTCACATCATAG 59.502 37.037 12.21 0.00 45.13 2.23
5843 6359 7.341030 AGATGTCATTTGGTTCACATCATAGA 58.659 34.615 12.21 0.00 45.13 1.98
5844 6360 7.830697 AGATGTCATTTGGTTCACATCATAGAA 59.169 33.333 12.21 0.00 45.13 2.10
5845 6361 7.757941 TGTCATTTGGTTCACATCATAGAAA 57.242 32.000 0.00 0.00 0.00 2.52
5846 6362 8.352137 TGTCATTTGGTTCACATCATAGAAAT 57.648 30.769 0.00 0.00 0.00 2.17
5847 6363 8.805175 TGTCATTTGGTTCACATCATAGAAATT 58.195 29.630 0.00 0.00 0.00 1.82
5848 6364 9.643693 GTCATTTGGTTCACATCATAGAAATTT 57.356 29.630 0.00 0.00 0.00 1.82
5868 6384 4.330944 TTTTTCGTTGAGTCTAGGCTCA 57.669 40.909 23.07 23.07 43.03 4.26
5869 6385 4.537135 TTTTCGTTGAGTCTAGGCTCAT 57.463 40.909 26.91 0.00 43.99 2.90
5870 6386 3.510388 TTCGTTGAGTCTAGGCTCATG 57.490 47.619 26.91 21.23 43.99 3.07
5871 6387 2.447443 TCGTTGAGTCTAGGCTCATGT 58.553 47.619 26.91 0.00 43.99 3.21
5872 6388 2.826128 TCGTTGAGTCTAGGCTCATGTT 59.174 45.455 26.91 0.00 43.99 2.71
5873 6389 3.258372 TCGTTGAGTCTAGGCTCATGTTT 59.742 43.478 26.91 0.00 43.99 2.83
5874 6390 4.461431 TCGTTGAGTCTAGGCTCATGTTTA 59.539 41.667 26.91 9.70 43.99 2.01
5875 6391 5.127194 TCGTTGAGTCTAGGCTCATGTTTAT 59.873 40.000 26.91 0.00 43.99 1.40
5876 6392 5.812642 CGTTGAGTCTAGGCTCATGTTTATT 59.187 40.000 26.91 0.00 43.99 1.40
5877 6393 6.313905 CGTTGAGTCTAGGCTCATGTTTATTT 59.686 38.462 26.91 0.00 43.99 1.40
5878 6394 7.148407 CGTTGAGTCTAGGCTCATGTTTATTTT 60.148 37.037 26.91 0.00 43.99 1.82
5879 6395 7.849804 TGAGTCTAGGCTCATGTTTATTTTC 57.150 36.000 23.07 0.00 40.23 2.29
5880 6396 6.823689 TGAGTCTAGGCTCATGTTTATTTTCC 59.176 38.462 23.07 0.00 40.23 3.13
5881 6397 6.963322 AGTCTAGGCTCATGTTTATTTTCCT 58.037 36.000 0.00 0.00 0.00 3.36
5882 6398 7.406104 AGTCTAGGCTCATGTTTATTTTCCTT 58.594 34.615 0.00 0.00 0.00 3.36
5883 6399 7.890655 AGTCTAGGCTCATGTTTATTTTCCTTT 59.109 33.333 0.00 0.00 0.00 3.11
5884 6400 7.970614 GTCTAGGCTCATGTTTATTTTCCTTTG 59.029 37.037 0.00 0.00 0.00 2.77
5885 6401 6.916360 AGGCTCATGTTTATTTTCCTTTGA 57.084 33.333 0.00 0.00 0.00 2.69
5886 6402 7.301868 AGGCTCATGTTTATTTTCCTTTGAA 57.698 32.000 0.00 0.00 0.00 2.69
5887 6403 7.734942 AGGCTCATGTTTATTTTCCTTTGAAA 58.265 30.769 0.00 0.00 38.69 2.69
5888 6404 8.377799 AGGCTCATGTTTATTTTCCTTTGAAAT 58.622 29.630 0.00 0.00 40.08 2.17
5889 6405 8.445493 GGCTCATGTTTATTTTCCTTTGAAATG 58.555 33.333 0.00 0.00 40.08 2.32
5890 6406 8.992073 GCTCATGTTTATTTTCCTTTGAAATGT 58.008 29.630 0.00 0.00 40.08 2.71
5892 6408 9.270640 TCATGTTTATTTTCCTTTGAAATGTGG 57.729 29.630 0.00 0.00 40.08 4.17
5893 6409 9.270640 CATGTTTATTTTCCTTTGAAATGTGGA 57.729 29.630 0.00 0.00 40.08 4.02
5894 6410 8.885494 TGTTTATTTTCCTTTGAAATGTGGAG 57.115 30.769 0.00 0.00 40.08 3.86
5895 6411 7.930865 TGTTTATTTTCCTTTGAAATGTGGAGG 59.069 33.333 0.00 0.00 40.08 4.30
5896 6412 7.847711 TTATTTTCCTTTGAAATGTGGAGGA 57.152 32.000 0.00 0.00 40.08 3.71
5897 6413 6.940430 ATTTTCCTTTGAAATGTGGAGGAT 57.060 33.333 0.00 0.00 40.08 3.24
5898 6414 9.540538 TTATTTTCCTTTGAAATGTGGAGGATA 57.459 29.630 0.00 0.00 40.08 2.59
5899 6415 7.466746 TTTTCCTTTGAAATGTGGAGGATAG 57.533 36.000 0.00 0.00 40.08 2.08
5900 6416 5.116084 TCCTTTGAAATGTGGAGGATAGG 57.884 43.478 0.00 0.00 31.82 2.57
5901 6417 4.788075 TCCTTTGAAATGTGGAGGATAGGA 59.212 41.667 0.00 0.00 31.82 2.94
5902 6418 5.252863 TCCTTTGAAATGTGGAGGATAGGAA 59.747 40.000 0.00 0.00 31.82 3.36
5903 6419 5.358160 CCTTTGAAATGTGGAGGATAGGAAC 59.642 44.000 0.00 0.00 0.00 3.62
5904 6420 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
5905 6421 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
5906 6422 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
5907 6423 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
5908 6424 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
5948 6464 3.631250 TCATTCCTATGAACCAAAGGGC 58.369 45.455 0.00 0.00 37.83 5.19
5949 6465 3.269381 TCATTCCTATGAACCAAAGGGCT 59.731 43.478 0.00 0.00 37.83 5.19
5950 6466 3.825908 TTCCTATGAACCAAAGGGCTT 57.174 42.857 0.00 0.00 37.90 4.35
5951 6467 3.825908 TCCTATGAACCAAAGGGCTTT 57.174 42.857 0.00 0.00 37.90 3.51
5952 6468 4.938575 TCCTATGAACCAAAGGGCTTTA 57.061 40.909 0.00 0.00 37.90 1.85
5953 6469 5.263872 TCCTATGAACCAAAGGGCTTTAA 57.736 39.130 0.00 0.00 37.90 1.52
5954 6470 5.646215 TCCTATGAACCAAAGGGCTTTAAA 58.354 37.500 0.00 0.00 37.90 1.52
5955 6471 5.714806 TCCTATGAACCAAAGGGCTTTAAAG 59.285 40.000 11.02 11.02 37.90 1.85
5956 6472 4.890158 ATGAACCAAAGGGCTTTAAAGG 57.110 40.909 16.78 1.79 37.90 3.11
5957 6473 3.917300 TGAACCAAAGGGCTTTAAAGGA 58.083 40.909 16.78 0.00 37.90 3.36
5958 6474 4.290942 TGAACCAAAGGGCTTTAAAGGAA 58.709 39.130 16.78 0.00 37.90 3.36
5959 6475 4.717280 TGAACCAAAGGGCTTTAAAGGAAA 59.283 37.500 16.78 0.00 37.90 3.13
5960 6476 5.189934 TGAACCAAAGGGCTTTAAAGGAAAA 59.810 36.000 16.78 0.00 37.90 2.29
5961 6477 5.702065 ACCAAAGGGCTTTAAAGGAAAAA 57.298 34.783 16.78 0.00 37.90 1.94
6012 6528 5.467035 TTCATGTGAAATTCCTCCAAACC 57.533 39.130 0.00 0.00 0.00 3.27
6013 6529 4.478203 TCATGTGAAATTCCTCCAAACCA 58.522 39.130 0.00 0.00 0.00 3.67
6014 6530 4.898265 TCATGTGAAATTCCTCCAAACCAA 59.102 37.500 0.00 0.00 0.00 3.67
6015 6531 5.365025 TCATGTGAAATTCCTCCAAACCAAA 59.635 36.000 0.00 0.00 0.00 3.28
6016 6532 5.275067 TGTGAAATTCCTCCAAACCAAAG 57.725 39.130 0.00 0.00 0.00 2.77
6017 6533 4.100808 TGTGAAATTCCTCCAAACCAAAGG 59.899 41.667 0.00 0.00 0.00 3.11
6018 6534 4.343814 GTGAAATTCCTCCAAACCAAAGGA 59.656 41.667 0.00 0.00 37.42 3.36
6022 6538 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
6023 6539 0.900182 CTCCAAACCAAAGGAGGCCC 60.900 60.000 0.00 0.00 46.11 5.80
6051 6567 8.691797 AGACTTTTAGGACTCTAATGATGACTC 58.308 37.037 0.00 0.00 35.61 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.201930 GGTCATGATCTCGTCGAAGTTACT 60.202 45.833 0.00 0.00 0.00 2.24
20 21 3.242641 CGGTCATGATCTCGTCGAAGTTA 60.243 47.826 4.09 0.00 0.00 2.24
25 26 1.264288 CATCGGTCATGATCTCGTCGA 59.736 52.381 4.09 5.71 33.80 4.20
29 30 0.668706 GGGCATCGGTCATGATCTCG 60.669 60.000 4.09 7.03 33.80 4.04
50 51 2.794910 GACACCGGATATGACATCAACG 59.205 50.000 9.46 0.00 0.00 4.10
60 61 3.492656 CGTTCATTCCTGACACCGGATAT 60.493 47.826 9.46 0.00 0.00 1.63
65 66 0.948623 TGCGTTCATTCCTGACACCG 60.949 55.000 0.00 0.00 0.00 4.94
66 67 1.398390 GATGCGTTCATTCCTGACACC 59.602 52.381 0.00 0.00 31.96 4.16
68 69 1.678728 GGGATGCGTTCATTCCTGACA 60.679 52.381 0.00 0.00 43.76 3.58
74 75 1.819632 AGCCGGGATGCGTTCATTC 60.820 57.895 2.18 0.00 36.02 2.67
75 76 2.114670 CAGCCGGGATGCGTTCATT 61.115 57.895 2.18 0.00 36.02 2.57
128 129 2.125350 GCCTGGCCTTCAGTCTCG 60.125 66.667 7.66 0.00 41.83 4.04
132 133 3.564345 CTGCTGCCTGGCCTTCAGT 62.564 63.158 17.53 0.00 41.83 3.41
139 140 0.107508 TTCTGTATCTGCTGCCTGGC 60.108 55.000 12.87 12.87 0.00 4.85
143 144 0.107508 TGCCTTCTGTATCTGCTGCC 60.108 55.000 0.00 0.00 0.00 4.85
147 148 1.929836 CTCGTTGCCTTCTGTATCTGC 59.070 52.381 0.00 0.00 0.00 4.26
155 156 2.113243 GACCACCCTCGTTGCCTTCT 62.113 60.000 0.00 0.00 0.00 2.85
156 157 1.671379 GACCACCCTCGTTGCCTTC 60.671 63.158 0.00 0.00 0.00 3.46
169 170 0.461870 TAGCATGTCATGGCGACCAC 60.462 55.000 14.64 0.00 44.71 4.16
170 171 0.461870 GTAGCATGTCATGGCGACCA 60.462 55.000 14.64 1.01 44.71 4.02
183 184 3.537874 GAGGGCGTCGGGTAGCAT 61.538 66.667 0.00 0.00 34.54 3.79
184 185 4.753662 AGAGGGCGTCGGGTAGCA 62.754 66.667 0.96 0.00 34.54 3.49
185 186 3.459063 AAGAGGGCGTCGGGTAGC 61.459 66.667 0.96 0.00 0.00 3.58
187 188 1.001020 TACAAGAGGGCGTCGGGTA 60.001 57.895 0.96 5.83 0.00 3.69
203 205 4.446385 TGTGAGTCAACGCATTGTAAGTAC 59.554 41.667 0.00 0.00 37.11 2.73
216 218 3.429085 CTGTTGCAACTTGTGAGTCAAC 58.571 45.455 28.61 0.00 39.35 3.18
238 240 0.816825 CTCCTCGGATGTGGCATTGG 60.817 60.000 0.00 0.00 0.00 3.16
302 304 7.007367 CGTGCATTGCAGTAAAACAATTACTAG 59.993 37.037 12.53 0.00 40.08 2.57
303 305 6.799441 CGTGCATTGCAGTAAAACAATTACTA 59.201 34.615 12.53 0.00 40.08 1.82
313 316 6.489127 AGTATTAACGTGCATTGCAGTAAA 57.511 33.333 12.53 4.95 40.08 2.01
315 318 6.474427 GTCTAGTATTAACGTGCATTGCAGTA 59.526 38.462 12.53 2.11 40.08 2.74
316 319 5.291128 GTCTAGTATTAACGTGCATTGCAGT 59.709 40.000 12.53 9.53 40.08 4.40
317 320 5.290885 TGTCTAGTATTAACGTGCATTGCAG 59.709 40.000 12.53 8.89 40.08 4.41
441 444 7.886629 ATCATTGTCAGCATTAACCAAGTAT 57.113 32.000 0.00 0.00 0.00 2.12
449 452 9.849166 CATGCATAATATCATTGTCAGCATTAA 57.151 29.630 0.00 0.00 38.03 1.40
475 481 7.817418 TTAGCACCCTCCATTAATTAATGAC 57.183 36.000 31.05 15.19 44.40 3.06
477 483 7.138736 CGTTTAGCACCCTCCATTAATTAATG 58.861 38.462 25.20 25.20 42.00 1.90
511 517 3.762288 TCTACATCGCTCTGGTGTTTAGT 59.238 43.478 0.00 0.00 0.00 2.24
536 543 4.391830 TCCGTTCAACTGCATCTATTCAAC 59.608 41.667 0.00 0.00 0.00 3.18
549 556 5.125097 ACGTAGTAATCTCATCCGTTCAACT 59.875 40.000 0.00 0.00 41.94 3.16
552 559 4.637091 TCACGTAGTAATCTCATCCGTTCA 59.363 41.667 0.00 0.00 41.61 3.18
588 595 2.558378 ACGTGCATCCATCTCATTCAG 58.442 47.619 0.00 0.00 0.00 3.02
589 596 2.696989 ACGTGCATCCATCTCATTCA 57.303 45.000 0.00 0.00 0.00 2.57
590 597 5.484173 TTTTACGTGCATCCATCTCATTC 57.516 39.130 0.00 0.00 0.00 2.67
616 623 3.906720 TTTCTGAGGAATAACTCCCGG 57.093 47.619 0.00 0.00 46.81 5.73
639 646 4.094830 TCTCTTAAACTCCCGGCTTTTT 57.905 40.909 0.00 0.00 0.00 1.94
640 647 3.782656 TCTCTTAAACTCCCGGCTTTT 57.217 42.857 0.00 0.00 0.00 2.27
641 648 3.326880 TCTTCTCTTAAACTCCCGGCTTT 59.673 43.478 0.00 0.00 0.00 3.51
642 649 2.904434 TCTTCTCTTAAACTCCCGGCTT 59.096 45.455 0.00 0.00 0.00 4.35
643 650 2.537143 TCTTCTCTTAAACTCCCGGCT 58.463 47.619 0.00 0.00 0.00 5.52
644 651 3.056035 TCTTCTTCTCTTAAACTCCCGGC 60.056 47.826 0.00 0.00 0.00 6.13
645 652 4.463186 TCTCTTCTTCTCTTAAACTCCCGG 59.537 45.833 0.00 0.00 0.00 5.73
646 653 5.646577 TCTCTTCTTCTCTTAAACTCCCG 57.353 43.478 0.00 0.00 0.00 5.14
647 654 6.816140 CACATCTCTTCTTCTCTTAAACTCCC 59.184 42.308 0.00 0.00 0.00 4.30
648 655 7.382898 ACACATCTCTTCTTCTCTTAAACTCC 58.617 38.462 0.00 0.00 0.00 3.85
649 656 7.544217 GGACACATCTCTTCTTCTCTTAAACTC 59.456 40.741 0.00 0.00 0.00 3.01
659 666 1.272781 CGCGGACACATCTCTTCTTC 58.727 55.000 0.00 0.00 0.00 2.87
688 695 4.245660 ACATCATCGATTCAGACACGTTT 58.754 39.130 0.00 0.00 0.00 3.60
707 770 5.335661 GCTCAACCCTATTTTGTTTCGACAT 60.336 40.000 0.00 0.00 0.00 3.06
766 830 1.164041 AAGCACGTTTCTTGGACCGG 61.164 55.000 0.00 0.00 0.00 5.28
840 910 3.207321 TGGGCATTAATGAGAGGGGATTT 59.793 43.478 19.73 0.00 0.00 2.17
850 920 2.421388 CCTTCTCCGTGGGCATTAATGA 60.421 50.000 19.73 0.00 0.00 2.57
962 1032 2.111384 ACGACTACTACGGACTAGGGA 58.889 52.381 0.00 0.00 34.93 4.20
996 1071 0.324738 TCCTCGCCTTCTCCATGAGT 60.325 55.000 0.00 0.00 0.00 3.41
1214 1289 1.715785 GAGAAGGAGATGGAGGAGGG 58.284 60.000 0.00 0.00 0.00 4.30
1223 1298 0.829333 ATGCAGCACGAGAAGGAGAT 59.171 50.000 0.00 0.00 0.00 2.75
1250 1325 4.856801 GGGCGGCGATGACATGGT 62.857 66.667 12.98 0.00 0.00 3.55
1251 1326 4.854924 TGGGCGGCGATGACATGG 62.855 66.667 12.98 0.00 0.00 3.66
1253 1328 1.966901 TTACTGGGCGGCGATGACAT 61.967 55.000 12.98 0.00 0.00 3.06
1264 1346 1.884579 TCGGTAGATCGATTACTGGGC 59.115 52.381 18.37 0.01 33.92 5.36
1280 1362 4.524318 CGCGGCCAGGTAATCGGT 62.524 66.667 2.24 0.00 0.00 4.69
1282 1364 4.891727 AGCGCGGCCAGGTAATCG 62.892 66.667 8.83 0.00 0.00 3.34
1283 1365 2.967615 GAGCGCGGCCAGGTAATC 60.968 66.667 8.83 0.00 0.00 1.75
1284 1366 4.891727 CGAGCGCGGCCAGGTAAT 62.892 66.667 8.83 0.00 0.00 1.89
1307 1389 2.014010 AAAAATCAGCAGGCCTTCCA 57.986 45.000 0.00 0.00 33.74 3.53
1328 1410 9.781834 AACATTCGATTCGCAAAAATAAGATTA 57.218 25.926 0.00 0.00 0.00 1.75
1331 1413 7.481483 CAGAACATTCGATTCGCAAAAATAAGA 59.519 33.333 0.00 0.00 0.00 2.10
1332 1414 7.271223 ACAGAACATTCGATTCGCAAAAATAAG 59.729 33.333 0.00 0.00 0.00 1.73
1335 1417 5.460646 ACAGAACATTCGATTCGCAAAAAT 58.539 33.333 0.00 0.00 0.00 1.82
1337 1419 4.481930 ACAGAACATTCGATTCGCAAAA 57.518 36.364 0.00 0.00 0.00 2.44
1339 1421 3.496507 TCAACAGAACATTCGATTCGCAA 59.503 39.130 0.00 0.00 0.00 4.85
1341 1423 3.722555 TCAACAGAACATTCGATTCGC 57.277 42.857 0.00 0.00 0.00 4.70
1342 1424 4.499825 CGATCAACAGAACATTCGATTCG 58.500 43.478 0.00 0.00 0.00 3.34
1347 1429 3.601356 GATGCGATCAACAGAACATTCG 58.399 45.455 0.00 0.00 0.00 3.34
1358 1443 0.179111 GACCTGACCGATGCGATCAA 60.179 55.000 0.00 0.00 0.00 2.57
1562 1650 7.831193 CCTCTTTTCCTCTCCAAAGATTGAATA 59.169 37.037 0.00 0.00 38.15 1.75
1645 1733 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1646 1734 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1647 1735 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1648 1736 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1649 1737 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1650 1738 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1656 1744 4.227197 AGAGTCTAGAGAGGGAGAGAGAG 58.773 52.174 0.00 0.00 0.00 3.20
1700 1791 4.270084 AGTGTACGTTCACATCACAACTTG 59.730 41.667 24.53 0.00 40.37 3.16
1959 2069 8.739461 CGTAACCTTTTTAGCAAGTTTGTAAAG 58.261 33.333 0.00 0.00 0.00 1.85
1980 2090 1.153509 ATGCCCTGCCGTACGTAAC 60.154 57.895 15.21 3.86 0.00 2.50
2846 2968 2.184167 CCAAACTTGGGTGTCGCGT 61.184 57.895 5.77 0.00 44.70 6.01
3179 3489 4.320608 TCATGCATACATACTGCTTCGA 57.679 40.909 0.00 0.00 40.34 3.71
3181 3491 6.148315 TGCTAATCATGCATACATACTGCTTC 59.852 38.462 0.00 0.00 40.34 3.86
3191 3505 6.147581 CACTCCAATTGCTAATCATGCATAC 58.852 40.000 0.00 0.00 40.34 2.39
3259 3576 8.763356 TGCATGTTCAAACTGTTCAATTTAATC 58.237 29.630 0.00 0.00 0.00 1.75
3350 3685 6.298361 AGTGGGCAGCAATTTAAGAAAATTT 58.702 32.000 0.00 0.00 41.50 1.82
3353 3688 4.953940 AGTGGGCAGCAATTTAAGAAAA 57.046 36.364 0.00 0.00 0.00 2.29
3407 3820 5.892348 AGTTCAGTTAGGGGACATCAATTT 58.108 37.500 0.00 0.00 0.00 1.82
3408 3821 5.251700 AGAGTTCAGTTAGGGGACATCAATT 59.748 40.000 0.00 0.00 0.00 2.32
3409 3822 4.785376 AGAGTTCAGTTAGGGGACATCAAT 59.215 41.667 0.00 0.00 0.00 2.57
3410 3823 4.168101 AGAGTTCAGTTAGGGGACATCAA 58.832 43.478 0.00 0.00 0.00 2.57
3411 3824 3.791320 AGAGTTCAGTTAGGGGACATCA 58.209 45.455 0.00 0.00 0.00 3.07
3412 3825 4.828072 AAGAGTTCAGTTAGGGGACATC 57.172 45.455 0.00 0.00 0.00 3.06
3413 3826 4.019231 GGAAAGAGTTCAGTTAGGGGACAT 60.019 45.833 0.00 0.00 35.25 3.06
3474 3887 6.358178 TGGGAACTGTGTACTGATGTTAAAA 58.642 36.000 0.00 0.00 0.00 1.52
3691 4107 6.603997 AGTCACTTGGGTGTTTAACAATACAA 59.396 34.615 0.00 4.97 43.41 2.41
3696 4112 8.749026 TTATTAGTCACTTGGGTGTTTAACAA 57.251 30.769 0.00 0.00 43.41 2.83
3706 4122 7.923414 AAGTAGCTTTTATTAGTCACTTGGG 57.077 36.000 0.00 0.00 0.00 4.12
3878 4295 4.619973 CATACACATTGTTGCAACCAAGT 58.380 39.130 26.14 15.85 0.00 3.16
3909 4326 2.428171 CAATAAATCCACCACTGCCCAG 59.572 50.000 0.00 0.00 0.00 4.45
3991 4409 3.273919 ACAAAGCGAATGCAGAACTTC 57.726 42.857 0.00 0.00 46.23 3.01
4009 4427 6.514870 GCCATTGTCACACTTCTATTCAAACA 60.515 38.462 0.00 0.00 0.00 2.83
4010 4428 5.858581 GCCATTGTCACACTTCTATTCAAAC 59.141 40.000 0.00 0.00 0.00 2.93
4040 4465 3.463127 CGATCGAAAACCGTGTAAACAC 58.537 45.455 10.26 3.08 43.15 3.32
4042 4467 2.489059 GCGATCGAAAACCGTGTAAAC 58.511 47.619 21.57 0.00 39.75 2.01
4063 4488 5.971763 ACTTTCAGGAGTGTATCTGATCAC 58.028 41.667 0.00 3.02 39.42 3.06
4122 4547 1.069823 CTGACAGACTGCCACACTTCT 59.930 52.381 1.25 0.00 0.00 2.85
4218 4643 0.917533 AGCTTGCATCCCTGTCAGAT 59.082 50.000 0.00 0.00 0.00 2.90
4350 4777 3.563223 CATCTTTGATGAGCCCTCCAAT 58.437 45.455 1.64 0.00 0.00 3.16
4598 5025 4.000988 TGCTCCGAAGTTCCTTCAATAAC 58.999 43.478 0.00 0.00 40.17 1.89
4652 5079 4.344679 TCAGAAAAACAGGGTGATTTGCAT 59.655 37.500 0.00 0.00 0.00 3.96
4675 5102 3.447586 ACACCGAGTATCAAGTATGTGCT 59.552 43.478 0.00 0.00 33.17 4.40
4746 5179 6.312399 ACACGAAAAGTTGCAGATAATTCA 57.688 33.333 0.00 0.00 0.00 2.57
4879 5312 1.074405 TCTGCCCATCTGTGCTTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
5349 5862 2.106332 GGACAACGCGATCCGGAT 59.894 61.111 19.21 19.21 42.52 4.18
5356 5869 3.025743 CACGTTCGGACAACGCGA 61.026 61.111 15.93 0.00 46.58 5.87
5357 5870 4.054455 CCACGTTCGGACAACGCG 62.054 66.667 3.53 3.53 46.58 6.01
5377 5890 0.106708 CACTATGTGGACCGATGGGG 59.893 60.000 0.00 0.00 43.62 4.96
5401 5914 1.563111 TTGCGAGAAAACGAACGTCT 58.437 45.000 0.00 0.00 35.09 4.18
5407 5920 0.530211 TCCGGTTTGCGAGAAAACGA 60.530 50.000 16.61 3.59 40.29 3.85
5415 5928 1.030488 TGTTTGGTTCCGGTTTGCGA 61.030 50.000 0.00 0.00 0.00 5.10
5462 5975 0.452122 GATTTTGGTTCGTCGTGCGG 60.452 55.000 0.00 0.00 41.72 5.69
5464 5977 0.589223 TGGATTTTGGTTCGTCGTGC 59.411 50.000 0.00 0.00 0.00 5.34
5467 5980 1.069500 GTGGTGGATTTTGGTTCGTCG 60.069 52.381 0.00 0.00 0.00 5.12
5468 5981 1.069500 CGTGGTGGATTTTGGTTCGTC 60.069 52.381 0.00 0.00 0.00 4.20
5493 6006 0.538516 ACACAGACAGCGAGGAGAGT 60.539 55.000 0.00 0.00 0.00 3.24
5508 6021 0.249120 CTTCCGCCACATCCTACACA 59.751 55.000 0.00 0.00 0.00 3.72
5516 6029 2.766263 TCATTCTAGTCTTCCGCCACAT 59.234 45.455 0.00 0.00 0.00 3.21
5524 6037 9.703892 ATACATGTGCTAATCATTCTAGTCTTC 57.296 33.333 9.11 0.00 0.00 2.87
5541 6054 1.202290 CCTTCCGCCAAATACATGTGC 60.202 52.381 9.11 1.33 0.00 4.57
5579 6092 2.625790 AGCTTTCCGCCAAATTGTGTAA 59.374 40.909 0.00 0.00 40.39 2.41
5668 6184 1.269413 CCAGGTGTGAGCAAGCTTTTG 60.269 52.381 0.00 0.00 0.00 2.44
5713 6229 4.202243 CCAATGAACCAAAGAAAGCCTGAA 60.202 41.667 0.00 0.00 0.00 3.02
5715 6231 3.321682 TCCAATGAACCAAAGAAAGCCTG 59.678 43.478 0.00 0.00 0.00 4.85
5716 6232 3.575805 TCCAATGAACCAAAGAAAGCCT 58.424 40.909 0.00 0.00 0.00 4.58
5717 6233 4.541973 ATCCAATGAACCAAAGAAAGCC 57.458 40.909 0.00 0.00 0.00 4.35
5718 6234 5.418840 TCCTATCCAATGAACCAAAGAAAGC 59.581 40.000 0.00 0.00 0.00 3.51
5719 6235 7.651027 ATCCTATCCAATGAACCAAAGAAAG 57.349 36.000 0.00 0.00 0.00 2.62
5720 6236 9.713684 ATAATCCTATCCAATGAACCAAAGAAA 57.286 29.630 0.00 0.00 0.00 2.52
5721 6237 9.354673 GATAATCCTATCCAATGAACCAAAGAA 57.645 33.333 0.00 0.00 0.00 2.52
5722 6238 8.501904 TGATAATCCTATCCAATGAACCAAAGA 58.498 33.333 0.00 0.00 34.10 2.52
5723 6239 8.571336 GTGATAATCCTATCCAATGAACCAAAG 58.429 37.037 0.00 0.00 34.10 2.77
5724 6240 8.058235 TGTGATAATCCTATCCAATGAACCAAA 58.942 33.333 0.00 0.00 34.10 3.28
5725 6241 7.581814 TGTGATAATCCTATCCAATGAACCAA 58.418 34.615 0.00 0.00 34.10 3.67
5726 6242 7.147958 TGTGATAATCCTATCCAATGAACCA 57.852 36.000 0.00 0.00 34.10 3.67
5727 6243 7.939039 TCTTGTGATAATCCTATCCAATGAACC 59.061 37.037 0.00 0.00 34.10 3.62
5728 6244 8.908786 TCTTGTGATAATCCTATCCAATGAAC 57.091 34.615 0.00 0.00 34.10 3.18
5755 6271 9.950680 GTCATCTCATTTTCAACAAGTTTTCTA 57.049 29.630 0.00 0.00 0.00 2.10
5756 6272 8.469200 TGTCATCTCATTTTCAACAAGTTTTCT 58.531 29.630 0.00 0.00 0.00 2.52
5757 6273 8.633075 TGTCATCTCATTTTCAACAAGTTTTC 57.367 30.769 0.00 0.00 0.00 2.29
5758 6274 9.037737 CATGTCATCTCATTTTCAACAAGTTTT 57.962 29.630 0.00 0.00 0.00 2.43
5759 6275 8.199449 ACATGTCATCTCATTTTCAACAAGTTT 58.801 29.630 0.00 0.00 0.00 2.66
5760 6276 7.719483 ACATGTCATCTCATTTTCAACAAGTT 58.281 30.769 0.00 0.00 0.00 2.66
5761 6277 7.281040 ACATGTCATCTCATTTTCAACAAGT 57.719 32.000 0.00 0.00 0.00 3.16
5762 6278 9.499585 GATACATGTCATCTCATTTTCAACAAG 57.500 33.333 0.00 0.00 0.00 3.16
5763 6279 9.234827 AGATACATGTCATCTCATTTTCAACAA 57.765 29.630 0.00 0.00 0.00 2.83
5764 6280 8.797350 AGATACATGTCATCTCATTTTCAACA 57.203 30.769 0.00 0.00 0.00 3.33
5774 6290 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
5775 6291 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
5776 6292 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
5777 6293 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
5778 6294 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
5787 6303 9.828691 TCCTAATCATACTCATAGGATTTGAGA 57.171 33.333 7.63 0.00 38.37 3.27
5794 6310 9.883293 TCTCTTTTCCTAATCATACTCATAGGA 57.117 33.333 0.00 0.00 41.58 2.94
5798 6314 9.995003 GACATCTCTTTTCCTAATCATACTCAT 57.005 33.333 0.00 0.00 0.00 2.90
5799 6315 8.981659 TGACATCTCTTTTCCTAATCATACTCA 58.018 33.333 0.00 0.00 0.00 3.41
5800 6316 9.995003 ATGACATCTCTTTTCCTAATCATACTC 57.005 33.333 0.00 0.00 0.00 2.59
5804 6320 8.910944 CCAAATGACATCTCTTTTCCTAATCAT 58.089 33.333 0.00 0.00 0.00 2.45
5805 6321 7.890127 ACCAAATGACATCTCTTTTCCTAATCA 59.110 33.333 0.00 0.00 0.00 2.57
5806 6322 8.286191 ACCAAATGACATCTCTTTTCCTAATC 57.714 34.615 0.00 0.00 0.00 1.75
5807 6323 8.655935 AACCAAATGACATCTCTTTTCCTAAT 57.344 30.769 0.00 0.00 0.00 1.73
5808 6324 7.723616 TGAACCAAATGACATCTCTTTTCCTAA 59.276 33.333 0.00 0.00 0.00 2.69
5809 6325 7.174946 GTGAACCAAATGACATCTCTTTTCCTA 59.825 37.037 0.00 0.00 0.00 2.94
5810 6326 6.015940 GTGAACCAAATGACATCTCTTTTCCT 60.016 38.462 0.00 0.00 0.00 3.36
5811 6327 6.152379 GTGAACCAAATGACATCTCTTTTCC 58.848 40.000 0.00 0.00 0.00 3.13
5812 6328 6.738114 TGTGAACCAAATGACATCTCTTTTC 58.262 36.000 0.00 0.00 0.00 2.29
5813 6329 6.713762 TGTGAACCAAATGACATCTCTTTT 57.286 33.333 0.00 0.00 0.00 2.27
5814 6330 6.491062 TGATGTGAACCAAATGACATCTCTTT 59.509 34.615 0.00 0.00 43.38 2.52
5815 6331 6.005823 TGATGTGAACCAAATGACATCTCTT 58.994 36.000 0.00 0.00 43.38 2.85
5816 6332 5.563592 TGATGTGAACCAAATGACATCTCT 58.436 37.500 0.00 0.00 43.38 3.10
5817 6333 5.885230 TGATGTGAACCAAATGACATCTC 57.115 39.130 0.00 0.00 43.38 2.75
5818 6334 7.341030 TCTATGATGTGAACCAAATGACATCT 58.659 34.615 0.00 0.00 43.38 2.90
5819 6335 7.558161 TCTATGATGTGAACCAAATGACATC 57.442 36.000 0.00 0.00 43.31 3.06
5820 6336 7.943079 TTCTATGATGTGAACCAAATGACAT 57.057 32.000 0.00 0.00 0.00 3.06
5821 6337 7.757941 TTTCTATGATGTGAACCAAATGACA 57.242 32.000 0.00 0.00 0.00 3.58
5822 6338 9.643693 AAATTTCTATGATGTGAACCAAATGAC 57.356 29.630 0.00 0.00 0.00 3.06
5847 6363 4.330944 TGAGCCTAGACTCAACGAAAAA 57.669 40.909 6.25 0.00 43.59 1.94
5856 6372 7.051000 AGGAAAATAAACATGAGCCTAGACTC 58.949 38.462 0.00 0.00 37.19 3.36
5857 6373 6.963322 AGGAAAATAAACATGAGCCTAGACT 58.037 36.000 0.00 0.00 0.00 3.24
5858 6374 7.631717 AAGGAAAATAAACATGAGCCTAGAC 57.368 36.000 0.00 0.00 0.00 2.59
5859 6375 7.888021 TCAAAGGAAAATAAACATGAGCCTAGA 59.112 33.333 0.00 0.00 0.00 2.43
5860 6376 8.055279 TCAAAGGAAAATAAACATGAGCCTAG 57.945 34.615 0.00 0.00 0.00 3.02
5861 6377 8.415950 TTCAAAGGAAAATAAACATGAGCCTA 57.584 30.769 0.00 0.00 0.00 3.93
5862 6378 6.916360 TCAAAGGAAAATAAACATGAGCCT 57.084 33.333 0.00 0.00 0.00 4.58
5863 6379 7.961325 TTTCAAAGGAAAATAAACATGAGCC 57.039 32.000 0.00 0.00 39.96 4.70
5864 6380 8.992073 ACATTTCAAAGGAAAATAAACATGAGC 58.008 29.630 0.00 0.00 45.52 4.26
5866 6382 9.270640 CCACATTTCAAAGGAAAATAAACATGA 57.729 29.630 0.00 0.00 45.52 3.07
5867 6383 9.270640 TCCACATTTCAAAGGAAAATAAACATG 57.729 29.630 0.00 0.00 45.52 3.21
5868 6384 9.492973 CTCCACATTTCAAAGGAAAATAAACAT 57.507 29.630 0.00 0.00 45.52 2.71
5869 6385 7.930865 CCTCCACATTTCAAAGGAAAATAAACA 59.069 33.333 0.00 0.00 45.52 2.83
5870 6386 8.147704 TCCTCCACATTTCAAAGGAAAATAAAC 58.852 33.333 0.00 0.00 45.52 2.01
5871 6387 8.256356 TCCTCCACATTTCAAAGGAAAATAAA 57.744 30.769 0.00 0.00 45.52 1.40
5872 6388 7.847711 TCCTCCACATTTCAAAGGAAAATAA 57.152 32.000 0.00 0.00 45.52 1.40
5873 6389 9.189156 CTATCCTCCACATTTCAAAGGAAAATA 57.811 33.333 0.00 0.00 45.52 1.40
5874 6390 6.940430 ATCCTCCACATTTCAAAGGAAAAT 57.060 33.333 0.00 0.00 45.52 1.82
5875 6391 6.437162 CCTATCCTCCACATTTCAAAGGAAAA 59.563 38.462 0.00 0.00 45.52 2.29
5876 6392 5.951747 CCTATCCTCCACATTTCAAAGGAAA 59.048 40.000 0.00 0.00 46.36 3.13
5877 6393 5.252863 TCCTATCCTCCACATTTCAAAGGAA 59.747 40.000 0.00 0.00 39.47 3.36
5878 6394 4.788075 TCCTATCCTCCACATTTCAAAGGA 59.212 41.667 0.00 0.00 40.27 3.36
5879 6395 5.116084 TCCTATCCTCCACATTTCAAAGG 57.884 43.478 0.00 0.00 0.00 3.11
5880 6396 5.358160 GGTTCCTATCCTCCACATTTCAAAG 59.642 44.000 0.00 0.00 0.00 2.77
5881 6397 5.222233 TGGTTCCTATCCTCCACATTTCAAA 60.222 40.000 0.00 0.00 0.00 2.69
5882 6398 4.290985 TGGTTCCTATCCTCCACATTTCAA 59.709 41.667 0.00 0.00 0.00 2.69
5883 6399 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
5884 6400 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
5885 6401 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
5886 6402 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
5887 6403 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
5888 6404 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
5889 6405 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
5926 6442 7.969517 TAAAGCCCTTTGGTTCATAGGAATGAA 60.970 37.037 3.62 0.00 40.13 2.57
5927 6443 3.269381 AGCCCTTTGGTTCATAGGAATGA 59.731 43.478 6.07 0.00 40.43 2.57
5928 6444 3.635591 AGCCCTTTGGTTCATAGGAATG 58.364 45.455 6.07 0.00 35.14 2.67
5929 6445 4.337264 AAGCCCTTTGGTTCATAGGAAT 57.663 40.909 6.07 0.00 35.14 3.01
5930 6446 3.825908 AAGCCCTTTGGTTCATAGGAA 57.174 42.857 6.07 0.00 35.14 3.36
5931 6447 3.825908 AAAGCCCTTTGGTTCATAGGA 57.174 42.857 6.07 0.00 35.14 2.94
5932 6448 5.105351 CCTTTAAAGCCCTTTGGTTCATAGG 60.105 44.000 9.86 0.00 33.40 2.57
5933 6449 5.714806 TCCTTTAAAGCCCTTTGGTTCATAG 59.285 40.000 9.86 0.00 32.32 2.23
5934 6450 5.646215 TCCTTTAAAGCCCTTTGGTTCATA 58.354 37.500 9.86 0.00 32.32 2.15
5935 6451 4.488770 TCCTTTAAAGCCCTTTGGTTCAT 58.511 39.130 9.86 0.00 32.32 2.57
5936 6452 3.917300 TCCTTTAAAGCCCTTTGGTTCA 58.083 40.909 9.86 0.00 32.32 3.18
5937 6453 4.948341 TTCCTTTAAAGCCCTTTGGTTC 57.052 40.909 9.86 0.00 32.32 3.62
5938 6454 5.702065 TTTTCCTTTAAAGCCCTTTGGTT 57.298 34.783 9.86 0.00 35.85 3.67
5939 6455 5.702065 TTTTTCCTTTAAAGCCCTTTGGT 57.298 34.783 9.86 0.00 34.23 3.67
5986 6502 8.260114 GGTTTGGAGGAATTTCACATGAATTAT 58.740 33.333 0.00 0.00 33.54 1.28
5987 6503 7.234371 TGGTTTGGAGGAATTTCACATGAATTA 59.766 33.333 0.00 0.00 33.54 1.40
5988 6504 6.043012 TGGTTTGGAGGAATTTCACATGAATT 59.957 34.615 0.00 0.00 33.54 2.17
5989 6505 5.543405 TGGTTTGGAGGAATTTCACATGAAT 59.457 36.000 0.00 0.00 33.54 2.57
5990 6506 4.898265 TGGTTTGGAGGAATTTCACATGAA 59.102 37.500 0.00 0.00 0.00 2.57
5991 6507 4.478203 TGGTTTGGAGGAATTTCACATGA 58.522 39.130 0.00 0.00 0.00 3.07
5992 6508 4.870123 TGGTTTGGAGGAATTTCACATG 57.130 40.909 0.00 0.00 0.00 3.21
5993 6509 5.221702 CCTTTGGTTTGGAGGAATTTCACAT 60.222 40.000 0.00 0.00 32.11 3.21
5994 6510 4.100808 CCTTTGGTTTGGAGGAATTTCACA 59.899 41.667 0.00 0.00 32.11 3.58
5995 6511 4.343814 TCCTTTGGTTTGGAGGAATTTCAC 59.656 41.667 0.00 0.00 36.67 3.18
5996 6512 4.551671 TCCTTTGGTTTGGAGGAATTTCA 58.448 39.130 0.00 0.00 36.67 2.69
5997 6513 5.139435 CTCCTTTGGTTTGGAGGAATTTC 57.861 43.478 0.00 0.00 44.44 2.17
6004 6520 0.900182 GGGCCTCCTTTGGTTTGGAG 60.900 60.000 0.84 0.00 46.91 3.86
6005 6521 1.155155 GGGCCTCCTTTGGTTTGGA 59.845 57.895 0.84 0.00 0.00 3.53
6006 6522 1.913262 GGGGCCTCCTTTGGTTTGG 60.913 63.158 0.84 0.00 0.00 3.28
6007 6523 1.152355 TGGGGCCTCCTTTGGTTTG 60.152 57.895 0.00 0.00 36.20 2.93
6008 6524 1.156095 CTGGGGCCTCCTTTGGTTT 59.844 57.895 0.00 0.00 36.20 3.27
6009 6525 1.778383 TCTGGGGCCTCCTTTGGTT 60.778 57.895 0.00 0.00 36.20 3.67
6010 6526 2.121506 TCTGGGGCCTCCTTTGGT 60.122 61.111 0.00 0.00 36.20 3.67
6011 6527 1.793820 AAGTCTGGGGCCTCCTTTGG 61.794 60.000 0.00 0.00 36.20 3.28
6012 6528 0.113190 AAAGTCTGGGGCCTCCTTTG 59.887 55.000 0.00 0.00 36.20 2.77
6013 6529 0.860457 AAAAGTCTGGGGCCTCCTTT 59.140 50.000 0.00 0.00 36.20 3.11
6014 6530 1.636003 CTAAAAGTCTGGGGCCTCCTT 59.364 52.381 0.00 0.00 36.20 3.36
6015 6531 1.290134 CTAAAAGTCTGGGGCCTCCT 58.710 55.000 0.00 0.00 36.20 3.69
6016 6532 0.256177 CCTAAAAGTCTGGGGCCTCC 59.744 60.000 0.00 0.72 0.00 4.30
6017 6533 1.065345 GTCCTAAAAGTCTGGGGCCTC 60.065 57.143 0.84 0.00 0.00 4.70
6018 6534 0.992695 GTCCTAAAAGTCTGGGGCCT 59.007 55.000 0.84 0.00 0.00 5.19
6019 6535 0.992695 AGTCCTAAAAGTCTGGGGCC 59.007 55.000 0.00 0.00 0.00 5.80
6020 6536 1.909986 AGAGTCCTAAAAGTCTGGGGC 59.090 52.381 0.00 0.00 0.00 5.80
6021 6537 5.425539 TCATTAGAGTCCTAAAAGTCTGGGG 59.574 44.000 0.00 0.00 38.28 4.96
6022 6538 6.546428 TCATTAGAGTCCTAAAAGTCTGGG 57.454 41.667 0.00 0.00 38.28 4.45
6023 6539 7.708752 GTCATCATTAGAGTCCTAAAAGTCTGG 59.291 40.741 0.00 0.00 38.28 3.86
6051 6567 3.055385 TCTTTGAGAGTCCAATTACCCCG 60.055 47.826 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.