Multiple sequence alignment - TraesCS1B01G263500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G263500 chr1B 100.000 3185 0 0 1 3185 463830759 463833943 0.000000e+00 5882
1 TraesCS1B01G263500 chr1B 100.000 98 0 0 1 98 463824052 463824149 7.020000e-42 182
2 TraesCS1B01G263500 chr1A 91.243 2695 127 42 104 2750 446235540 446238173 0.000000e+00 3568
3 TraesCS1B01G263500 chr1A 82.500 320 33 8 2773 3087 446238289 446238590 3.150000e-65 259
4 TraesCS1B01G263500 chr1A 98.980 98 0 1 1 98 13750125 13750029 1.170000e-39 174
5 TraesCS1B01G263500 chr1A 98.980 98 0 1 1 98 505535274 505535178 1.170000e-39 174
6 TraesCS1B01G263500 chr1D 93.734 2378 76 21 650 3003 346021326 346023654 0.000000e+00 3498
7 TraesCS1B01G263500 chr1D 92.958 568 19 4 104 653 346020730 346021294 0.000000e+00 808
8 TraesCS1B01G263500 chrUn 98.980 98 0 1 1 98 333427995 333428091 1.170000e-39 174
9 TraesCS1B01G263500 chr6A 98.980 98 0 1 1 98 583038229 583038133 1.170000e-39 174
10 TraesCS1B01G263500 chr3A 98.980 98 0 1 1 98 667298658 667298754 1.170000e-39 174
11 TraesCS1B01G263500 chr3A 98.980 98 0 1 1 98 711243606 711243702 1.170000e-39 174
12 TraesCS1B01G263500 chr2A 98.980 98 0 1 1 98 115422588 115422684 1.170000e-39 174
13 TraesCS1B01G263500 chr2A 98.980 98 0 1 1 98 727628516 727628612 1.170000e-39 174
14 TraesCS1B01G263500 chr5A 83.929 168 23 3 1640 1807 11754084 11754247 1.180000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G263500 chr1B 463830759 463833943 3184 False 5882.0 5882 100.0000 1 3185 1 chr1B.!!$F2 3184
1 TraesCS1B01G263500 chr1A 446235540 446238590 3050 False 1913.5 3568 86.8715 104 3087 2 chr1A.!!$F1 2983
2 TraesCS1B01G263500 chr1D 346020730 346023654 2924 False 2153.0 3498 93.3460 104 3003 2 chr1D.!!$F1 2899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.036164 AAAGTGGCACCGACATAGCA 59.964 50.0 15.27 0.0 0.0 3.49 F
251 252 0.103208 GACCACGGATGAATCTCGCT 59.897 55.0 0.00 0.0 0.0 4.93 F
382 384 0.323633 TGTCATCCCCTCCGAACGTA 60.324 55.0 0.00 0.0 0.0 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1760 0.383124 GCAGCACAAAGTCGACGTTC 60.383 55.000 14.0 3.68 0.0 3.95 R
2169 2252 1.271054 CCATCTTAGCCCCTCCATTCG 60.271 57.143 0.0 0.00 0.0 3.34 R
2200 2283 1.831389 CGTGTTGTCGTGGCTTCTGG 61.831 60.000 0.0 0.00 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.571372 TTACAAGGCGGTTACAAAAAGG 57.429 40.909 0.00 0.00 0.00 3.11
22 23 2.657143 ACAAGGCGGTTACAAAAAGGA 58.343 42.857 0.00 0.00 0.00 3.36
23 24 2.621526 ACAAGGCGGTTACAAAAAGGAG 59.378 45.455 0.00 0.00 0.00 3.69
24 25 1.905637 AGGCGGTTACAAAAAGGAGG 58.094 50.000 0.00 0.00 0.00 4.30
25 26 0.242825 GGCGGTTACAAAAAGGAGGC 59.757 55.000 0.00 0.00 0.00 4.70
26 27 0.955905 GCGGTTACAAAAAGGAGGCA 59.044 50.000 0.00 0.00 0.00 4.75
27 28 1.068541 GCGGTTACAAAAAGGAGGCAG 60.069 52.381 0.00 0.00 0.00 4.85
28 29 2.227194 CGGTTACAAAAAGGAGGCAGT 58.773 47.619 0.00 0.00 0.00 4.40
29 30 2.621526 CGGTTACAAAAAGGAGGCAGTT 59.378 45.455 0.00 0.00 0.00 3.16
30 31 3.550030 CGGTTACAAAAAGGAGGCAGTTG 60.550 47.826 0.00 0.00 0.00 3.16
31 32 3.381045 GTTACAAAAAGGAGGCAGTTGC 58.619 45.455 0.00 0.00 41.14 4.17
48 49 3.834726 CCAAAAGTGGCACCGACA 58.165 55.556 15.27 0.00 38.35 4.35
49 50 2.340427 CCAAAAGTGGCACCGACAT 58.660 52.632 15.27 0.00 38.35 3.06
50 51 1.529226 CCAAAAGTGGCACCGACATA 58.471 50.000 15.27 0.00 38.35 2.29
51 52 1.468520 CCAAAAGTGGCACCGACATAG 59.531 52.381 15.27 0.00 38.35 2.23
52 53 1.135689 CAAAAGTGGCACCGACATAGC 60.136 52.381 15.27 0.00 0.00 2.97
53 54 0.036164 AAAGTGGCACCGACATAGCA 59.964 50.000 15.27 0.00 0.00 3.49
54 55 0.391661 AAGTGGCACCGACATAGCAG 60.392 55.000 15.27 0.00 0.00 4.24
55 56 1.079127 GTGGCACCGACATAGCAGT 60.079 57.895 6.29 0.00 0.00 4.40
56 57 1.079197 TGGCACCGACATAGCAGTG 60.079 57.895 0.00 0.00 0.00 3.66
57 58 1.218047 GGCACCGACATAGCAGTGA 59.782 57.895 0.00 0.00 31.79 3.41
58 59 0.179073 GGCACCGACATAGCAGTGAT 60.179 55.000 0.00 0.00 31.79 3.06
59 60 1.656652 GCACCGACATAGCAGTGATT 58.343 50.000 0.00 0.00 31.79 2.57
60 61 2.483013 GGCACCGACATAGCAGTGATTA 60.483 50.000 0.00 0.00 31.79 1.75
61 62 3.194861 GCACCGACATAGCAGTGATTAA 58.805 45.455 0.00 0.00 31.79 1.40
62 63 3.809832 GCACCGACATAGCAGTGATTAAT 59.190 43.478 0.00 0.00 31.79 1.40
63 64 4.988540 GCACCGACATAGCAGTGATTAATA 59.011 41.667 0.00 0.00 31.79 0.98
64 65 5.119279 GCACCGACATAGCAGTGATTAATAG 59.881 44.000 0.00 0.00 31.79 1.73
65 66 6.216569 CACCGACATAGCAGTGATTAATAGT 58.783 40.000 0.00 0.00 31.79 2.12
66 67 6.701841 CACCGACATAGCAGTGATTAATAGTT 59.298 38.462 0.00 0.00 31.79 2.24
67 68 7.865889 CACCGACATAGCAGTGATTAATAGTTA 59.134 37.037 0.00 0.00 31.79 2.24
68 69 8.418662 ACCGACATAGCAGTGATTAATAGTTAA 58.581 33.333 0.00 0.00 0.00 2.01
69 70 9.424319 CCGACATAGCAGTGATTAATAGTTAAT 57.576 33.333 0.00 0.00 38.49 1.40
106 107 2.249309 TCCTAACACTCTTCTCCCCC 57.751 55.000 0.00 0.00 0.00 5.40
122 123 1.210538 CCCCTCCTAAACCCCAGTAC 58.789 60.000 0.00 0.00 0.00 2.73
123 124 1.274242 CCCCTCCTAAACCCCAGTACT 60.274 57.143 0.00 0.00 0.00 2.73
124 125 2.022722 CCCCTCCTAAACCCCAGTACTA 60.023 54.545 0.00 0.00 0.00 1.82
177 178 0.988678 GGTAGATCCAGCAACCCCCT 60.989 60.000 0.00 0.00 35.97 4.79
251 252 0.103208 GACCACGGATGAATCTCGCT 59.897 55.000 0.00 0.00 0.00 4.93
382 384 0.323633 TGTCATCCCCTCCGAACGTA 60.324 55.000 0.00 0.00 0.00 3.57
617 641 3.376636 GCTAGTTTCTTACTCCTCCCCT 58.623 50.000 0.00 0.00 38.33 4.79
735 799 0.533755 GCCATCTCCATTCCTCCACG 60.534 60.000 0.00 0.00 0.00 4.94
736 800 1.123077 CCATCTCCATTCCTCCACGA 58.877 55.000 0.00 0.00 0.00 4.35
737 801 1.069823 CCATCTCCATTCCTCCACGAG 59.930 57.143 0.00 0.00 0.00 4.18
738 802 2.034878 CATCTCCATTCCTCCACGAGA 58.965 52.381 0.00 0.00 34.29 4.04
739 803 2.231716 TCTCCATTCCTCCACGAGAA 57.768 50.000 0.00 0.00 0.00 2.87
740 804 2.536066 TCTCCATTCCTCCACGAGAAA 58.464 47.619 0.00 0.00 0.00 2.52
741 805 2.497675 TCTCCATTCCTCCACGAGAAAG 59.502 50.000 0.00 0.00 0.00 2.62
742 806 1.555075 TCCATTCCTCCACGAGAAAGG 59.445 52.381 0.00 0.00 0.00 3.11
743 807 1.407437 CCATTCCTCCACGAGAAAGGG 60.407 57.143 0.00 0.00 0.00 3.95
744 808 0.912486 ATTCCTCCACGAGAAAGGGG 59.088 55.000 0.00 0.00 35.56 4.79
745 809 2.990479 CCTCCACGAGAAAGGGGG 59.010 66.667 0.00 0.00 39.69 5.40
746 810 2.269241 CTCCACGAGAAAGGGGGC 59.731 66.667 0.00 0.00 34.80 5.80
747 811 2.203938 TCCACGAGAAAGGGGGCT 60.204 61.111 0.00 0.00 34.80 5.19
752 816 1.261238 ACGAGAAAGGGGGCTGAGAG 61.261 60.000 0.00 0.00 0.00 3.20
759 823 1.457455 GGGGGCTGAGAGAGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
959 1036 2.865492 CTTCTTGCAGAAGGCCTCC 58.135 57.895 5.23 0.00 46.03 4.30
960 1037 0.679321 CTTCTTGCAGAAGGCCTCCC 60.679 60.000 5.23 0.23 46.03 4.30
961 1038 2.437359 CTTGCAGAAGGCCTCCCG 60.437 66.667 5.23 0.00 43.89 5.14
965 1042 4.168291 CAGAAGGCCTCCCGCTCC 62.168 72.222 5.23 0.00 37.74 4.70
966 1043 4.722535 AGAAGGCCTCCCGCTCCA 62.723 66.667 5.23 0.00 37.74 3.86
967 1044 3.483869 GAAGGCCTCCCGCTCCAT 61.484 66.667 5.23 0.00 37.74 3.41
1031 1114 2.587753 CGCTGTCGTGGTGGTGTT 60.588 61.111 0.00 0.00 0.00 3.32
2025 2108 0.536006 ACCTGCAGCACAACTTCCTC 60.536 55.000 8.66 0.00 0.00 3.71
2185 2268 1.451936 CCCGAATGGAGGGGCTAAG 59.548 63.158 0.00 0.00 45.14 2.18
2190 2273 0.480252 AATGGAGGGGCTAAGATGGC 59.520 55.000 0.00 0.00 0.00 4.40
2200 2283 0.534652 CTAAGATGGCTGGCTGCTCC 60.535 60.000 16.14 5.82 42.39 4.70
2226 2310 1.502990 CCACGACAACACGATTGCCA 61.503 55.000 0.00 0.00 37.03 4.92
2265 2355 2.503356 GAGGAGGAGCAAGGAAGAATGA 59.497 50.000 0.00 0.00 0.00 2.57
2279 2369 5.956563 AGGAAGAATGAAGGAGATTGCAAAT 59.043 36.000 1.71 0.00 0.00 2.32
2337 2427 6.589139 AGTTTACTAGCGTTTTACTGTGGATC 59.411 38.462 0.00 0.00 0.00 3.36
2405 2499 9.346725 CAGAAGAAGTTGGTGCTTTAATAATTC 57.653 33.333 0.00 0.00 0.00 2.17
2406 2500 9.077885 AGAAGAAGTTGGTGCTTTAATAATTCA 57.922 29.630 0.00 0.00 0.00 2.57
2503 2597 2.488153 GAGTAAGTGGTGAACATTGGGC 59.512 50.000 0.00 0.00 0.00 5.36
2514 2608 0.609662 ACATTGGGCCTTGATGTTGC 59.390 50.000 4.53 0.00 30.22 4.17
2522 2616 1.308069 CCTTGATGTTGCCCTGACGG 61.308 60.000 0.00 0.00 0.00 4.79
2530 2624 1.191489 TTGCCCTGACGGTGAGATGA 61.191 55.000 0.00 0.00 0.00 2.92
2636 2733 7.214449 CGATGTTGTACGAGATTGAATGAAAAC 59.786 37.037 1.80 0.00 0.00 2.43
2639 2736 6.148270 TGTACGAGATTGAATGAAAACGAC 57.852 37.500 0.00 0.00 0.00 4.34
2645 2742 5.679906 AGATTGAATGAAAACGACGAACAG 58.320 37.500 0.00 0.00 0.00 3.16
2674 2771 8.400186 GTTACAAGCTTACAGTTCTTTTGGTTA 58.600 33.333 0.00 0.00 0.00 2.85
2688 2785 6.646267 TCTTTTGGTTAGCGTGGTCTATAAT 58.354 36.000 0.00 0.00 0.00 1.28
2766 2873 5.632244 ACCTTTTGTTCACGTTGTACTTT 57.368 34.783 0.00 0.00 0.00 2.66
2831 3021 3.036819 TGCAGATCTCAAGCCTGACTAT 58.963 45.455 0.00 0.00 0.00 2.12
2844 3036 5.574188 AGCCTGACTATGAAACCTGATTTT 58.426 37.500 0.00 0.00 0.00 1.82
2845 3037 5.649831 AGCCTGACTATGAAACCTGATTTTC 59.350 40.000 0.00 0.00 36.23 2.29
2856 3048 8.463930 TGAAACCTGATTTTCTGATTACTTGT 57.536 30.769 0.00 0.00 36.58 3.16
2857 3049 8.912988 TGAAACCTGATTTTCTGATTACTTGTT 58.087 29.630 0.00 0.00 36.58 2.83
2858 3050 9.185192 GAAACCTGATTTTCTGATTACTTGTTG 57.815 33.333 0.00 0.00 33.41 3.33
2859 3051 7.823745 ACCTGATTTTCTGATTACTTGTTGT 57.176 32.000 0.00 0.00 0.00 3.32
2860 3052 7.875971 ACCTGATTTTCTGATTACTTGTTGTC 58.124 34.615 0.00 0.00 0.00 3.18
2861 3053 7.502226 ACCTGATTTTCTGATTACTTGTTGTCA 59.498 33.333 0.00 0.00 0.00 3.58
2867 3059 6.631971 TCTGATTACTTGTTGTCAATTGCA 57.368 33.333 0.00 0.00 32.82 4.08
2871 3063 7.935520 TGATTACTTGTTGTCAATTGCAAGTA 58.064 30.769 22.18 22.18 46.39 2.24
2873 3065 5.835113 ACTTGTTGTCAATTGCAAGTAGT 57.165 34.783 20.74 17.89 46.39 2.73
2906 3098 2.669569 AGATTTGCGCCGCTGTGT 60.670 55.556 11.67 0.00 0.00 3.72
2907 3099 2.502510 GATTTGCGCCGCTGTGTG 60.503 61.111 11.67 0.00 0.00 3.82
2933 3125 8.244113 GCTTATTAAACAACTTATGGCAGAGTT 58.756 33.333 11.85 11.85 36.58 3.01
2940 3132 9.461312 AAACAACTTATGGCAGAGTTATTATGA 57.539 29.630 15.85 0.00 34.52 2.15
2946 3138 9.941664 CTTATGGCAGAGTTATTATGACAAAAG 57.058 33.333 0.00 0.00 35.13 2.27
3008 3205 2.287909 TGATTTTCTTTTTGACCCCGCG 60.288 45.455 0.00 0.00 0.00 6.46
3014 3211 2.905935 TTTTTGACCCCGCGTTCCCA 62.906 55.000 4.92 0.00 0.00 4.37
3040 3237 0.106708 TCACTTTGCTCTGTTCGGCT 59.893 50.000 0.00 0.00 0.00 5.52
3041 3238 0.514691 CACTTTGCTCTGTTCGGCTC 59.485 55.000 0.00 0.00 0.00 4.70
3049 3246 0.040646 TCTGTTCGGCTCTTCCCCTA 59.959 55.000 0.00 0.00 0.00 3.53
3053 3250 2.289565 GTTCGGCTCTTCCCCTATTTG 58.710 52.381 0.00 0.00 0.00 2.32
3054 3251 1.580059 TCGGCTCTTCCCCTATTTGT 58.420 50.000 0.00 0.00 0.00 2.83
3062 3259 4.918588 TCTTCCCCTATTTGTTCTTGTCC 58.081 43.478 0.00 0.00 0.00 4.02
3064 3261 4.301072 TCCCCTATTTGTTCTTGTCCTG 57.699 45.455 0.00 0.00 0.00 3.86
3071 3268 5.712152 ATTTGTTCTTGTCCTGATCAACC 57.288 39.130 0.00 0.00 0.00 3.77
3081 3278 1.081892 CTGATCAACCGGTCAAGCTG 58.918 55.000 8.04 1.12 0.00 4.24
3087 3284 1.134175 CAACCGGTCAAGCTGTTTTGT 59.866 47.619 8.04 0.00 0.00 2.83
3088 3285 0.738389 ACCGGTCAAGCTGTTTTGTG 59.262 50.000 0.00 0.00 0.00 3.33
3089 3286 0.738389 CCGGTCAAGCTGTTTTGTGT 59.262 50.000 0.00 0.00 0.00 3.72
3090 3287 1.268539 CCGGTCAAGCTGTTTTGTGTC 60.269 52.381 0.00 0.00 0.00 3.67
3091 3288 1.400142 CGGTCAAGCTGTTTTGTGTCA 59.600 47.619 0.00 0.00 0.00 3.58
3092 3289 2.791158 CGGTCAAGCTGTTTTGTGTCAC 60.791 50.000 0.00 0.00 0.00 3.67
3093 3290 2.423538 GGTCAAGCTGTTTTGTGTCACT 59.576 45.455 4.27 0.00 0.00 3.41
3094 3291 3.625764 GGTCAAGCTGTTTTGTGTCACTA 59.374 43.478 4.27 0.00 0.00 2.74
3095 3292 4.275936 GGTCAAGCTGTTTTGTGTCACTAT 59.724 41.667 4.27 0.00 0.00 2.12
3096 3293 5.207768 GTCAAGCTGTTTTGTGTCACTATG 58.792 41.667 4.27 0.00 0.00 2.23
3097 3294 4.275689 TCAAGCTGTTTTGTGTCACTATGG 59.724 41.667 4.27 0.00 0.00 2.74
3098 3295 4.085357 AGCTGTTTTGTGTCACTATGGA 57.915 40.909 4.27 0.00 0.00 3.41
3099 3296 4.067896 AGCTGTTTTGTGTCACTATGGAG 58.932 43.478 4.27 0.00 0.00 3.86
3100 3297 4.065088 GCTGTTTTGTGTCACTATGGAGA 58.935 43.478 4.27 0.00 0.00 3.71
3101 3298 4.697352 GCTGTTTTGTGTCACTATGGAGAT 59.303 41.667 4.27 0.00 0.00 2.75
3102 3299 5.874810 GCTGTTTTGTGTCACTATGGAGATA 59.125 40.000 4.27 0.00 0.00 1.98
3103 3300 6.183360 GCTGTTTTGTGTCACTATGGAGATAC 60.183 42.308 4.27 0.00 0.00 2.24
3104 3301 7.004555 TGTTTTGTGTCACTATGGAGATACT 57.995 36.000 4.27 0.00 0.00 2.12
3105 3302 6.873605 TGTTTTGTGTCACTATGGAGATACTG 59.126 38.462 4.27 0.00 0.00 2.74
3106 3303 6.605471 TTTGTGTCACTATGGAGATACTGT 57.395 37.500 4.27 0.00 0.00 3.55
3107 3304 5.836821 TGTGTCACTATGGAGATACTGTC 57.163 43.478 4.27 0.00 0.00 3.51
3108 3305 5.261216 TGTGTCACTATGGAGATACTGTCA 58.739 41.667 4.27 0.00 0.00 3.58
3109 3306 5.125578 TGTGTCACTATGGAGATACTGTCAC 59.874 44.000 4.27 0.00 0.00 3.67
3110 3307 5.358442 GTGTCACTATGGAGATACTGTCACT 59.642 44.000 0.00 0.00 0.00 3.41
3111 3308 6.542735 GTGTCACTATGGAGATACTGTCACTA 59.457 42.308 0.00 0.00 0.00 2.74
3112 3309 7.067129 GTGTCACTATGGAGATACTGTCACTAA 59.933 40.741 0.00 0.00 0.00 2.24
3113 3310 7.067129 TGTCACTATGGAGATACTGTCACTAAC 59.933 40.741 0.00 0.00 0.00 2.34
3114 3311 6.546403 TCACTATGGAGATACTGTCACTAACC 59.454 42.308 0.00 0.00 0.00 2.85
3115 3312 4.920640 ATGGAGATACTGTCACTAACCG 57.079 45.455 0.00 0.00 0.00 4.44
3116 3313 3.693807 TGGAGATACTGTCACTAACCGT 58.306 45.455 0.00 0.00 0.00 4.83
3117 3314 3.693085 TGGAGATACTGTCACTAACCGTC 59.307 47.826 0.00 0.00 0.00 4.79
3118 3315 3.693085 GGAGATACTGTCACTAACCGTCA 59.307 47.826 0.00 0.00 0.00 4.35
3119 3316 4.157289 GGAGATACTGTCACTAACCGTCAA 59.843 45.833 0.00 0.00 0.00 3.18
3120 3317 5.336213 GGAGATACTGTCACTAACCGTCAAA 60.336 44.000 0.00 0.00 0.00 2.69
3121 3318 5.467705 AGATACTGTCACTAACCGTCAAAC 58.532 41.667 0.00 0.00 0.00 2.93
3122 3319 3.530265 ACTGTCACTAACCGTCAAACA 57.470 42.857 0.00 0.00 0.00 2.83
3123 3320 4.067972 ACTGTCACTAACCGTCAAACAT 57.932 40.909 0.00 0.00 0.00 2.71
3124 3321 3.807622 ACTGTCACTAACCGTCAAACATG 59.192 43.478 0.00 0.00 0.00 3.21
3125 3322 3.135225 TGTCACTAACCGTCAAACATGG 58.865 45.455 0.00 0.00 37.17 3.66
3127 3324 3.059188 GTCACTAACCGTCAAACATGGTG 60.059 47.826 0.00 0.00 44.59 4.17
3128 3325 2.225491 CACTAACCGTCAAACATGGTGG 59.775 50.000 0.00 0.00 44.59 4.61
3129 3326 2.105134 ACTAACCGTCAAACATGGTGGA 59.895 45.455 0.00 0.00 44.59 4.02
3130 3327 2.060050 AACCGTCAAACATGGTGGAA 57.940 45.000 0.00 0.00 44.59 3.53
3131 3328 1.604604 ACCGTCAAACATGGTGGAAG 58.395 50.000 0.00 0.00 43.56 3.46
3132 3329 1.133915 ACCGTCAAACATGGTGGAAGT 60.134 47.619 0.15 0.00 43.56 3.01
3133 3330 1.535462 CCGTCAAACATGGTGGAAGTC 59.465 52.381 0.15 0.00 0.00 3.01
3134 3331 1.194547 CGTCAAACATGGTGGAAGTCG 59.805 52.381 0.00 0.00 0.00 4.18
3135 3332 2.218603 GTCAAACATGGTGGAAGTCGT 58.781 47.619 0.00 0.00 0.00 4.34
3136 3333 3.395639 GTCAAACATGGTGGAAGTCGTA 58.604 45.455 0.00 0.00 0.00 3.43
3137 3334 4.000988 GTCAAACATGGTGGAAGTCGTAT 58.999 43.478 0.00 0.00 0.00 3.06
3138 3335 4.454504 GTCAAACATGGTGGAAGTCGTATT 59.545 41.667 0.00 0.00 0.00 1.89
3139 3336 4.693566 TCAAACATGGTGGAAGTCGTATTC 59.306 41.667 0.00 0.00 0.00 1.75
3140 3337 3.973206 ACATGGTGGAAGTCGTATTCA 57.027 42.857 0.00 0.00 0.00 2.57
3141 3338 3.861840 ACATGGTGGAAGTCGTATTCAG 58.138 45.455 0.00 0.00 0.00 3.02
3142 3339 3.513912 ACATGGTGGAAGTCGTATTCAGA 59.486 43.478 0.00 0.00 0.00 3.27
3143 3340 4.020573 ACATGGTGGAAGTCGTATTCAGAA 60.021 41.667 0.00 0.00 0.00 3.02
3144 3341 4.188247 TGGTGGAAGTCGTATTCAGAAG 57.812 45.455 5.08 0.00 0.00 2.85
3145 3342 3.830178 TGGTGGAAGTCGTATTCAGAAGA 59.170 43.478 5.08 0.00 0.00 2.87
3146 3343 4.174762 GGTGGAAGTCGTATTCAGAAGAC 58.825 47.826 0.00 0.00 0.00 3.01
3147 3344 3.852536 GTGGAAGTCGTATTCAGAAGACG 59.147 47.826 21.77 21.77 46.59 4.18
3165 3362 0.110373 CGAAGGCGTAAAGTGTTGGC 60.110 55.000 0.00 0.00 0.00 4.52
3166 3363 0.110373 GAAGGCGTAAAGTGTTGGCG 60.110 55.000 0.00 0.00 0.00 5.69
3167 3364 1.512156 AAGGCGTAAAGTGTTGGCGG 61.512 55.000 0.00 0.00 0.00 6.13
3168 3365 2.559330 GCGTAAAGTGTTGGCGGG 59.441 61.111 0.00 0.00 0.00 6.13
3169 3366 1.962306 GCGTAAAGTGTTGGCGGGA 60.962 57.895 0.00 0.00 0.00 5.14
3170 3367 1.908066 GCGTAAAGTGTTGGCGGGAG 61.908 60.000 0.00 0.00 0.00 4.30
3171 3368 1.296056 CGTAAAGTGTTGGCGGGAGG 61.296 60.000 0.00 0.00 0.00 4.30
3172 3369 0.250597 GTAAAGTGTTGGCGGGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
3173 3370 0.475044 TAAAGTGTTGGCGGGAGGTT 59.525 50.000 0.00 0.00 0.00 3.50
3174 3371 0.396556 AAAGTGTTGGCGGGAGGTTT 60.397 50.000 0.00 0.00 0.00 3.27
3175 3372 1.106944 AAGTGTTGGCGGGAGGTTTG 61.107 55.000 0.00 0.00 0.00 2.93
3176 3373 1.527380 GTGTTGGCGGGAGGTTTGA 60.527 57.895 0.00 0.00 0.00 2.69
3177 3374 1.104577 GTGTTGGCGGGAGGTTTGAA 61.105 55.000 0.00 0.00 0.00 2.69
3178 3375 0.178975 TGTTGGCGGGAGGTTTGAAT 60.179 50.000 0.00 0.00 0.00 2.57
3179 3376 1.074084 TGTTGGCGGGAGGTTTGAATA 59.926 47.619 0.00 0.00 0.00 1.75
3180 3377 1.743394 GTTGGCGGGAGGTTTGAATAG 59.257 52.381 0.00 0.00 0.00 1.73
3181 3378 1.281419 TGGCGGGAGGTTTGAATAGA 58.719 50.000 0.00 0.00 0.00 1.98
3182 3379 1.843851 TGGCGGGAGGTTTGAATAGAT 59.156 47.619 0.00 0.00 0.00 1.98
3183 3380 2.241176 TGGCGGGAGGTTTGAATAGATT 59.759 45.455 0.00 0.00 0.00 2.40
3184 3381 2.618709 GGCGGGAGGTTTGAATAGATTG 59.381 50.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.205587 TCCTTTTTGTAACCGCCTTGTAA 58.794 39.130 0.00 0.00 0.00 2.41
1 2 3.816523 CTCCTTTTTGTAACCGCCTTGTA 59.183 43.478 0.00 0.00 0.00 2.41
2 3 2.621526 CTCCTTTTTGTAACCGCCTTGT 59.378 45.455 0.00 0.00 0.00 3.16
3 4 2.030274 CCTCCTTTTTGTAACCGCCTTG 60.030 50.000 0.00 0.00 0.00 3.61
4 5 2.235891 CCTCCTTTTTGTAACCGCCTT 58.764 47.619 0.00 0.00 0.00 4.35
5 6 1.905637 CCTCCTTTTTGTAACCGCCT 58.094 50.000 0.00 0.00 0.00 5.52
6 7 0.242825 GCCTCCTTTTTGTAACCGCC 59.757 55.000 0.00 0.00 0.00 6.13
7 8 0.955905 TGCCTCCTTTTTGTAACCGC 59.044 50.000 0.00 0.00 0.00 5.68
8 9 2.227194 ACTGCCTCCTTTTTGTAACCG 58.773 47.619 0.00 0.00 0.00 4.44
9 10 3.798889 GCAACTGCCTCCTTTTTGTAACC 60.799 47.826 0.00 0.00 34.31 2.85
10 11 3.381045 GCAACTGCCTCCTTTTTGTAAC 58.619 45.455 0.00 0.00 34.31 2.50
11 12 3.726291 GCAACTGCCTCCTTTTTGTAA 57.274 42.857 0.00 0.00 34.31 2.41
32 33 1.135689 GCTATGTCGGTGCCACTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
33 34 1.165270 GCTATGTCGGTGCCACTTTT 58.835 50.000 0.00 0.00 0.00 2.27
34 35 0.036164 TGCTATGTCGGTGCCACTTT 59.964 50.000 0.00 0.00 0.00 2.66
35 36 0.391661 CTGCTATGTCGGTGCCACTT 60.392 55.000 0.00 0.00 0.00 3.16
36 37 1.219124 CTGCTATGTCGGTGCCACT 59.781 57.895 0.00 0.00 0.00 4.00
37 38 1.079127 ACTGCTATGTCGGTGCCAC 60.079 57.895 0.00 0.00 0.00 5.01
38 39 1.079197 CACTGCTATGTCGGTGCCA 60.079 57.895 0.00 0.00 36.65 4.92
39 40 0.179073 ATCACTGCTATGTCGGTGCC 60.179 55.000 3.83 0.00 41.79 5.01
40 41 1.656652 AATCACTGCTATGTCGGTGC 58.343 50.000 3.83 0.00 41.79 5.01
41 42 6.216569 ACTATTAATCACTGCTATGTCGGTG 58.783 40.000 0.00 0.00 43.03 4.94
42 43 6.406692 ACTATTAATCACTGCTATGTCGGT 57.593 37.500 0.00 0.00 0.00 4.69
43 44 8.812147 TTAACTATTAATCACTGCTATGTCGG 57.188 34.615 0.00 0.00 0.00 4.79
78 79 9.901172 GGGAGAAGAGTGTTAGGAATTAATTAA 57.099 33.333 0.00 0.00 0.00 1.40
79 80 8.491958 GGGGAGAAGAGTGTTAGGAATTAATTA 58.508 37.037 0.00 0.00 0.00 1.40
80 81 7.347252 GGGGAGAAGAGTGTTAGGAATTAATT 58.653 38.462 0.00 0.00 0.00 1.40
81 82 6.126449 GGGGGAGAAGAGTGTTAGGAATTAAT 60.126 42.308 0.00 0.00 0.00 1.40
82 83 5.191124 GGGGGAGAAGAGTGTTAGGAATTAA 59.809 44.000 0.00 0.00 0.00 1.40
83 84 4.720273 GGGGGAGAAGAGTGTTAGGAATTA 59.280 45.833 0.00 0.00 0.00 1.40
84 85 3.523972 GGGGGAGAAGAGTGTTAGGAATT 59.476 47.826 0.00 0.00 0.00 2.17
85 86 3.116174 GGGGGAGAAGAGTGTTAGGAAT 58.884 50.000 0.00 0.00 0.00 3.01
86 87 2.113777 AGGGGGAGAAGAGTGTTAGGAA 59.886 50.000 0.00 0.00 0.00 3.36
87 88 1.722851 AGGGGGAGAAGAGTGTTAGGA 59.277 52.381 0.00 0.00 0.00 2.94
88 89 2.112190 GAGGGGGAGAAGAGTGTTAGG 58.888 57.143 0.00 0.00 0.00 2.69
89 90 2.112190 GGAGGGGGAGAAGAGTGTTAG 58.888 57.143 0.00 0.00 0.00 2.34
90 91 1.722851 AGGAGGGGGAGAAGAGTGTTA 59.277 52.381 0.00 0.00 0.00 2.41
91 92 0.494095 AGGAGGGGGAGAAGAGTGTT 59.506 55.000 0.00 0.00 0.00 3.32
92 93 1.394532 TAGGAGGGGGAGAAGAGTGT 58.605 55.000 0.00 0.00 0.00 3.55
93 94 2.502130 GTTTAGGAGGGGGAGAAGAGTG 59.498 54.545 0.00 0.00 0.00 3.51
94 95 2.562443 GGTTTAGGAGGGGGAGAAGAGT 60.562 54.545 0.00 0.00 0.00 3.24
95 96 2.120312 GGTTTAGGAGGGGGAGAAGAG 58.880 57.143 0.00 0.00 0.00 2.85
96 97 1.274242 GGGTTTAGGAGGGGGAGAAGA 60.274 57.143 0.00 0.00 0.00 2.87
97 98 1.214217 GGGTTTAGGAGGGGGAGAAG 58.786 60.000 0.00 0.00 0.00 2.85
98 99 0.253488 GGGGTTTAGGAGGGGGAGAA 60.253 60.000 0.00 0.00 0.00 2.87
99 100 1.399057 GGGGTTTAGGAGGGGGAGA 59.601 63.158 0.00 0.00 0.00 3.71
100 101 0.988678 CTGGGGTTTAGGAGGGGGAG 60.989 65.000 0.00 0.00 0.00 4.30
101 102 1.084084 CTGGGGTTTAGGAGGGGGA 59.916 63.158 0.00 0.00 0.00 4.81
102 103 0.045162 TACTGGGGTTTAGGAGGGGG 59.955 60.000 0.00 0.00 0.00 5.40
106 107 3.036819 GGGTAGTACTGGGGTTTAGGAG 58.963 54.545 5.39 0.00 0.00 3.69
122 123 1.573108 TTTCTGAGCTGGAGGGGTAG 58.427 55.000 0.00 0.00 0.00 3.18
123 124 2.038863 TTTTCTGAGCTGGAGGGGTA 57.961 50.000 0.00 0.00 0.00 3.69
124 125 1.149101 TTTTTCTGAGCTGGAGGGGT 58.851 50.000 0.00 0.00 0.00 4.95
177 178 1.824760 TGTCAGTGACGGTGGTCGA 60.825 57.895 18.17 0.00 46.49 4.20
230 231 0.595053 CGAGATTCATCCGTGGTCCG 60.595 60.000 0.00 0.00 0.00 4.79
251 252 0.457853 GCTGTTGGCGATACGTGAGA 60.458 55.000 0.00 0.00 0.00 3.27
444 446 4.065281 GCCCACTACCTGTCGCGT 62.065 66.667 5.77 0.00 0.00 6.01
682 741 1.304952 CCTTTAATGGGGGCGTGGA 59.695 57.895 0.00 0.00 0.00 4.02
710 774 1.153086 GAATGGAGATGGCGGTGCT 60.153 57.895 0.00 0.00 0.00 4.40
720 784 2.231716 TTCTCGTGGAGGAATGGAGA 57.768 50.000 0.00 0.00 32.30 3.71
735 799 0.829990 CTCTCTCAGCCCCCTTTCTC 59.170 60.000 0.00 0.00 0.00 2.87
736 800 0.415429 TCTCTCTCAGCCCCCTTTCT 59.585 55.000 0.00 0.00 0.00 2.52
737 801 0.829990 CTCTCTCTCAGCCCCCTTTC 59.170 60.000 0.00 0.00 0.00 2.62
738 802 0.415429 TCTCTCTCTCAGCCCCCTTT 59.585 55.000 0.00 0.00 0.00 3.11
739 803 0.032217 CTCTCTCTCTCAGCCCCCTT 60.032 60.000 0.00 0.00 0.00 3.95
740 804 1.620259 CTCTCTCTCTCAGCCCCCT 59.380 63.158 0.00 0.00 0.00 4.79
741 805 1.457455 CCTCTCTCTCTCAGCCCCC 60.457 68.421 0.00 0.00 0.00 5.40
742 806 2.133641 GCCTCTCTCTCTCAGCCCC 61.134 68.421 0.00 0.00 0.00 5.80
743 807 1.076044 AGCCTCTCTCTCTCAGCCC 60.076 63.158 0.00 0.00 0.00 5.19
744 808 2.019897 GCAGCCTCTCTCTCTCAGCC 62.020 65.000 0.00 0.00 0.00 4.85
745 809 1.438814 GCAGCCTCTCTCTCTCAGC 59.561 63.158 0.00 0.00 0.00 4.26
746 810 1.031571 ACGCAGCCTCTCTCTCTCAG 61.032 60.000 0.00 0.00 0.00 3.35
747 811 1.001517 ACGCAGCCTCTCTCTCTCA 60.002 57.895 0.00 0.00 0.00 3.27
752 816 4.427661 ACGCACGCAGCCTCTCTC 62.428 66.667 0.00 0.00 41.38 3.20
959 1036 0.734942 CAAGCTTGCAAATGGAGCGG 60.735 55.000 14.65 0.00 41.19 5.52
960 1037 0.241749 TCAAGCTTGCAAATGGAGCG 59.758 50.000 21.99 0.00 41.19 5.03
961 1038 2.064014 GTTCAAGCTTGCAAATGGAGC 58.936 47.619 21.99 0.00 36.68 4.70
963 1040 1.000385 CGGTTCAAGCTTGCAAATGGA 60.000 47.619 21.99 0.00 0.00 3.41
965 1042 2.322161 CTCGGTTCAAGCTTGCAAATG 58.678 47.619 21.99 9.95 0.00 2.32
966 1043 1.270550 CCTCGGTTCAAGCTTGCAAAT 59.729 47.619 21.99 0.00 0.00 2.32
967 1044 0.667993 CCTCGGTTCAAGCTTGCAAA 59.332 50.000 21.99 9.04 0.00 3.68
1053 1136 1.078143 GTCAAGAATGCCCTCCGCT 60.078 57.895 0.00 0.00 38.78 5.52
1179 1262 3.687102 CCGTCGCAGTACACCCCA 61.687 66.667 0.00 0.00 0.00 4.96
1182 1265 1.735559 GTTCCCGTCGCAGTACACC 60.736 63.158 0.00 0.00 0.00 4.16
1482 1565 4.373116 AGCGACGCAATGGACGGT 62.373 61.111 23.70 0.00 34.00 4.83
1677 1760 0.383124 GCAGCACAAAGTCGACGTTC 60.383 55.000 14.00 3.68 0.00 3.95
1989 2072 3.639361 TACAGCAGCTGCAGCCCA 61.639 61.111 38.24 17.74 45.16 5.36
2169 2252 1.271054 CCATCTTAGCCCCTCCATTCG 60.271 57.143 0.00 0.00 0.00 3.34
2190 2273 2.438075 GCTTCTGGGAGCAGCCAG 60.438 66.667 0.00 0.00 42.25 4.85
2200 2283 1.831389 CGTGTTGTCGTGGCTTCTGG 61.831 60.000 0.00 0.00 0.00 3.86
2226 2310 1.905843 CCCCGATCAGAGGCGATCT 60.906 63.158 0.00 0.00 39.78 2.75
2265 2355 2.827921 GACCACCATTTGCAATCTCCTT 59.172 45.455 0.00 0.00 0.00 3.36
2279 2369 4.916041 ATCAAAGAATCAGAGACCACCA 57.084 40.909 0.00 0.00 0.00 4.17
2337 2427 5.338300 CCCTCCCCCAACAAAAAGAATAATG 60.338 44.000 0.00 0.00 0.00 1.90
2503 2597 1.308069 CCGTCAGGGCAACATCAAGG 61.308 60.000 0.00 0.00 39.74 3.61
2514 2608 0.105593 CCATCATCTCACCGTCAGGG 59.894 60.000 0.00 0.00 43.47 4.45
2522 2616 5.163364 ACTGATCCTAACACCATCATCTCAC 60.163 44.000 0.00 0.00 0.00 3.51
2530 2624 2.912956 ACACCACTGATCCTAACACCAT 59.087 45.455 0.00 0.00 0.00 3.55
2636 2733 1.191647 GCTTGTAACCACTGTTCGTCG 59.808 52.381 0.00 0.00 35.87 5.12
2639 2736 3.805422 TGTAAGCTTGTAACCACTGTTCG 59.195 43.478 9.86 0.00 35.87 3.95
2645 2742 6.373186 AAAGAACTGTAAGCTTGTAACCAC 57.627 37.500 9.86 0.00 37.60 4.16
2674 2771 4.672587 ACACATGATTATAGACCACGCT 57.327 40.909 0.00 0.00 0.00 5.07
2688 2785 4.587584 ATGCAATCAACACAACACATGA 57.412 36.364 0.00 0.00 0.00 3.07
2743 2840 5.632244 AAGTACAACGTGAACAAAAGGTT 57.368 34.783 0.00 0.00 44.10 3.50
2766 2873 1.107538 AGGGCTATCGCGTAGAAGCA 61.108 55.000 20.05 0.00 35.87 3.91
2831 3021 8.463930 ACAAGTAATCAGAAAATCAGGTTTCA 57.536 30.769 0.97 0.00 39.52 2.69
2844 3036 6.631971 TGCAATTGACAACAAGTAATCAGA 57.368 33.333 10.34 0.00 39.46 3.27
2845 3037 7.329438 CTTGCAATTGACAACAAGTAATCAG 57.671 36.000 10.34 0.00 39.46 2.90
2867 3059 2.814336 GCAAGCCAAGCAAGTACTACTT 59.186 45.455 0.00 0.00 39.39 2.24
2871 3063 1.202806 TCTGCAAGCCAAGCAAGTACT 60.203 47.619 0.00 0.00 42.17 2.73
2873 3065 2.205022 ATCTGCAAGCCAAGCAAGTA 57.795 45.000 0.00 0.00 42.17 2.24
2906 3098 7.393234 ACTCTGCCATAAGTTGTTTAATAAGCA 59.607 33.333 0.00 0.00 0.00 3.91
2907 3099 7.762382 ACTCTGCCATAAGTTGTTTAATAAGC 58.238 34.615 0.00 0.00 0.00 3.09
2933 3125 8.934023 AAGACCACTTTCCTTTTGTCATAATA 57.066 30.769 0.00 0.00 31.71 0.98
2937 3129 5.449553 AGAAGACCACTTTCCTTTTGTCAT 58.550 37.500 0.00 0.00 36.39 3.06
2940 3132 5.261216 TCAAGAAGACCACTTTCCTTTTGT 58.739 37.500 0.00 0.00 36.39 2.83
2946 3138 4.451900 TCACTTCAAGAAGACCACTTTCC 58.548 43.478 16.16 0.00 40.79 3.13
3032 3229 1.580059 AATAGGGGAAGAGCCGAACA 58.420 50.000 0.00 0.00 37.63 3.18
3040 3237 4.601857 AGGACAAGAACAAATAGGGGAAGA 59.398 41.667 0.00 0.00 0.00 2.87
3041 3238 4.702131 CAGGACAAGAACAAATAGGGGAAG 59.298 45.833 0.00 0.00 0.00 3.46
3049 3246 4.216257 CGGTTGATCAGGACAAGAACAAAT 59.784 41.667 0.00 0.00 31.06 2.32
3053 3250 2.076863 CCGGTTGATCAGGACAAGAAC 58.923 52.381 0.00 0.00 33.18 3.01
3054 3251 1.697432 ACCGGTTGATCAGGACAAGAA 59.303 47.619 0.00 0.00 35.40 2.52
3062 3259 1.081892 CAGCTTGACCGGTTGATCAG 58.918 55.000 9.42 1.57 0.00 2.90
3064 3261 1.523758 AACAGCTTGACCGGTTGATC 58.476 50.000 9.42 0.00 0.00 2.92
3071 3268 1.400142 TGACACAAAACAGCTTGACCG 59.600 47.619 0.00 0.00 0.00 4.79
3081 3278 6.874134 ACAGTATCTCCATAGTGACACAAAAC 59.126 38.462 8.59 0.00 37.94 2.43
3087 3284 5.510430 AGTGACAGTATCTCCATAGTGACA 58.490 41.667 4.22 1.94 37.94 3.58
3088 3285 7.419204 GTTAGTGACAGTATCTCCATAGTGAC 58.581 42.308 4.22 0.00 37.94 3.67
3089 3286 6.546403 GGTTAGTGACAGTATCTCCATAGTGA 59.454 42.308 4.22 0.00 37.94 3.41
3090 3287 6.513556 CGGTTAGTGACAGTATCTCCATAGTG 60.514 46.154 0.00 0.00 40.55 2.74
3091 3288 5.531659 CGGTTAGTGACAGTATCTCCATAGT 59.468 44.000 0.00 0.00 0.00 2.12
3092 3289 5.531659 ACGGTTAGTGACAGTATCTCCATAG 59.468 44.000 0.00 0.00 34.80 2.23
3093 3290 5.443283 ACGGTTAGTGACAGTATCTCCATA 58.557 41.667 0.00 0.00 34.80 2.74
3094 3291 4.279145 ACGGTTAGTGACAGTATCTCCAT 58.721 43.478 0.00 0.00 34.80 3.41
3095 3292 3.693085 GACGGTTAGTGACAGTATCTCCA 59.307 47.826 0.00 0.00 36.78 3.86
3096 3293 3.693085 TGACGGTTAGTGACAGTATCTCC 59.307 47.826 0.00 0.00 36.78 3.71
3097 3294 4.959596 TGACGGTTAGTGACAGTATCTC 57.040 45.455 0.00 0.00 36.78 2.75
3098 3295 5.010314 TGTTTGACGGTTAGTGACAGTATCT 59.990 40.000 0.00 0.00 36.78 1.98
3099 3296 5.224888 TGTTTGACGGTTAGTGACAGTATC 58.775 41.667 0.00 0.00 36.78 2.24
3100 3297 5.204409 TGTTTGACGGTTAGTGACAGTAT 57.796 39.130 0.00 0.00 36.78 2.12
3101 3298 4.652421 TGTTTGACGGTTAGTGACAGTA 57.348 40.909 0.00 0.00 36.78 2.74
3102 3299 3.530265 TGTTTGACGGTTAGTGACAGT 57.470 42.857 0.00 0.00 39.47 3.55
3103 3300 3.186409 CCATGTTTGACGGTTAGTGACAG 59.814 47.826 0.00 0.00 0.00 3.51
3104 3301 3.135225 CCATGTTTGACGGTTAGTGACA 58.865 45.455 0.00 0.00 0.00 3.58
3105 3302 3.059188 CACCATGTTTGACGGTTAGTGAC 60.059 47.826 0.00 0.00 0.00 3.67
3106 3303 3.135225 CACCATGTTTGACGGTTAGTGA 58.865 45.455 0.00 0.00 0.00 3.41
3107 3304 2.225491 CCACCATGTTTGACGGTTAGTG 59.775 50.000 0.00 0.00 0.00 2.74
3108 3305 2.105134 TCCACCATGTTTGACGGTTAGT 59.895 45.455 0.00 0.00 0.00 2.24
3109 3306 2.773487 TCCACCATGTTTGACGGTTAG 58.227 47.619 0.00 0.00 0.00 2.34
3110 3307 2.932855 TCCACCATGTTTGACGGTTA 57.067 45.000 0.00 0.00 0.00 2.85
3111 3308 1.953686 CTTCCACCATGTTTGACGGTT 59.046 47.619 0.00 0.00 0.00 4.44
3112 3309 1.133915 ACTTCCACCATGTTTGACGGT 60.134 47.619 0.00 0.00 0.00 4.83
3113 3310 1.535462 GACTTCCACCATGTTTGACGG 59.465 52.381 0.00 0.00 0.00 4.79
3114 3311 1.194547 CGACTTCCACCATGTTTGACG 59.805 52.381 0.00 0.00 0.00 4.35
3115 3312 2.218603 ACGACTTCCACCATGTTTGAC 58.781 47.619 0.00 0.00 0.00 3.18
3116 3313 2.631160 ACGACTTCCACCATGTTTGA 57.369 45.000 0.00 0.00 0.00 2.69
3117 3314 4.454161 TGAATACGACTTCCACCATGTTTG 59.546 41.667 0.00 0.00 0.00 2.93
3118 3315 4.647611 TGAATACGACTTCCACCATGTTT 58.352 39.130 0.00 0.00 0.00 2.83
3119 3316 4.020573 TCTGAATACGACTTCCACCATGTT 60.021 41.667 0.00 0.00 0.00 2.71
3120 3317 3.513912 TCTGAATACGACTTCCACCATGT 59.486 43.478 0.00 0.00 0.00 3.21
3121 3318 4.123497 TCTGAATACGACTTCCACCATG 57.877 45.455 0.00 0.00 0.00 3.66
3122 3319 4.466370 TCTTCTGAATACGACTTCCACCAT 59.534 41.667 0.00 0.00 0.00 3.55
3123 3320 3.830178 TCTTCTGAATACGACTTCCACCA 59.170 43.478 0.00 0.00 0.00 4.17
3124 3321 4.174762 GTCTTCTGAATACGACTTCCACC 58.825 47.826 0.00 0.00 0.00 4.61
3125 3322 3.852536 CGTCTTCTGAATACGACTTCCAC 59.147 47.826 19.63 0.00 38.89 4.02
3126 3323 3.754850 TCGTCTTCTGAATACGACTTCCA 59.245 43.478 21.99 4.50 40.43 3.53
3127 3324 4.352600 TCGTCTTCTGAATACGACTTCC 57.647 45.455 21.99 0.00 40.43 3.46
3128 3325 4.794246 CCTTCGTCTTCTGAATACGACTTC 59.206 45.833 24.52 0.00 44.53 3.01
3129 3326 4.734917 CCTTCGTCTTCTGAATACGACTT 58.265 43.478 24.52 0.00 44.53 3.01
3130 3327 3.427773 GCCTTCGTCTTCTGAATACGACT 60.428 47.826 24.52 0.00 44.53 4.18
3131 3328 2.853003 GCCTTCGTCTTCTGAATACGAC 59.147 50.000 24.52 13.52 44.53 4.34
3132 3329 2.477357 CGCCTTCGTCTTCTGAATACGA 60.477 50.000 21.99 21.99 43.31 3.43
3133 3330 1.846782 CGCCTTCGTCTTCTGAATACG 59.153 52.381 18.64 18.64 37.96 3.06
3146 3343 0.110373 GCCAACACTTTACGCCTTCG 60.110 55.000 0.00 0.00 42.43 3.79
3147 3344 0.110373 CGCCAACACTTTACGCCTTC 60.110 55.000 0.00 0.00 0.00 3.46
3148 3345 1.512156 CCGCCAACACTTTACGCCTT 61.512 55.000 0.00 0.00 0.00 4.35
3149 3346 1.964373 CCGCCAACACTTTACGCCT 60.964 57.895 0.00 0.00 0.00 5.52
3150 3347 2.559330 CCGCCAACACTTTACGCC 59.441 61.111 0.00 0.00 0.00 5.68
3151 3348 1.908066 CTCCCGCCAACACTTTACGC 61.908 60.000 0.00 0.00 0.00 4.42
3152 3349 1.296056 CCTCCCGCCAACACTTTACG 61.296 60.000 0.00 0.00 0.00 3.18
3153 3350 0.250597 ACCTCCCGCCAACACTTTAC 60.251 55.000 0.00 0.00 0.00 2.01
3154 3351 0.475044 AACCTCCCGCCAACACTTTA 59.525 50.000 0.00 0.00 0.00 1.85
3155 3352 0.396556 AAACCTCCCGCCAACACTTT 60.397 50.000 0.00 0.00 0.00 2.66
3156 3353 1.106944 CAAACCTCCCGCCAACACTT 61.107 55.000 0.00 0.00 0.00 3.16
3157 3354 1.528309 CAAACCTCCCGCCAACACT 60.528 57.895 0.00 0.00 0.00 3.55
3158 3355 1.104577 TTCAAACCTCCCGCCAACAC 61.105 55.000 0.00 0.00 0.00 3.32
3159 3356 0.178975 ATTCAAACCTCCCGCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
3160 3357 1.743394 CTATTCAAACCTCCCGCCAAC 59.257 52.381 0.00 0.00 0.00 3.77
3161 3358 1.631388 TCTATTCAAACCTCCCGCCAA 59.369 47.619 0.00 0.00 0.00 4.52
3162 3359 1.281419 TCTATTCAAACCTCCCGCCA 58.719 50.000 0.00 0.00 0.00 5.69
3163 3360 2.618709 CAATCTATTCAAACCTCCCGCC 59.381 50.000 0.00 0.00 0.00 6.13
3164 3361 3.971032 CAATCTATTCAAACCTCCCGC 57.029 47.619 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.