Multiple sequence alignment - TraesCS1B01G263300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G263300 chr1B 100.000 3176 0 0 1 3176 462985141 462981966 0.000000e+00 5866
1 TraesCS1B01G263300 chr1B 91.877 1428 101 5 957 2373 462805140 462803717 0.000000e+00 1980
2 TraesCS1B01G263300 chr1B 84.706 170 13 4 2620 2789 462803656 462803500 1.180000e-34 158
3 TraesCS1B01G263300 chr1D 96.589 1964 49 5 436 2384 344137231 344135271 0.000000e+00 3240
4 TraesCS1B01G263300 chr1D 94.398 482 8 5 2510 2991 344135220 344134758 0.000000e+00 723
5 TraesCS1B01G263300 chr1D 96.648 179 5 1 108 286 344137541 344137364 2.400000e-76 296
6 TraesCS1B01G263300 chr1D 81.579 152 13 6 2846 2989 344134063 344133919 9.310000e-21 111
7 TraesCS1B01G263300 chr1A 96.078 1428 44 3 957 2372 443659396 443660823 0.000000e+00 2316
8 TraesCS1B01G263300 chr1A 99.459 185 1 0 2992 3176 571559850 571559666 1.410000e-88 337
9 TraesCS1B01G263300 chr1A 99.454 183 1 0 2994 3176 23429337 23429155 1.830000e-87 333
10 TraesCS1B01G263300 chr1A 82.895 152 11 6 2846 2989 443661214 443661358 4.300000e-24 122
11 TraesCS1B01G263300 chr6A 99.476 191 0 1 2986 3176 60080235 60080424 2.350000e-91 346
12 TraesCS1B01G263300 chr6B 100.000 186 0 0 2991 3176 715691026 715690841 8.430000e-91 344
13 TraesCS1B01G263300 chr6B 93.000 100 7 0 2382 2481 130325768 130325867 2.550000e-31 147
14 TraesCS1B01G263300 chr6B 98.734 79 1 0 1 79 301848924 301849002 1.190000e-29 141
15 TraesCS1B01G263300 chr6B 98.734 79 1 0 1 79 714383835 714383757 1.190000e-29 141
16 TraesCS1B01G263300 chr6B 88.496 113 11 2 2372 2483 685337189 685337300 5.530000e-28 135
17 TraesCS1B01G263300 chr2B 98.964 193 1 1 2985 3176 241134601 241134409 8.430000e-91 344
18 TraesCS1B01G263300 chr2B 98.734 79 1 0 1 79 495010048 495010126 1.190000e-29 141
19 TraesCS1B01G263300 chr5B 100.000 183 0 0 2994 3176 552832629 552832811 3.920000e-89 339
20 TraesCS1B01G263300 chr5B 92.079 101 8 0 2382 2482 36231611 36231711 3.300000e-30 143
21 TraesCS1B01G263300 chr5A 98.936 188 1 1 2990 3176 553366855 553367042 5.080000e-88 335
22 TraesCS1B01G263300 chr4B 99.457 184 1 0 2993 3176 671904758 671904575 5.080000e-88 335
23 TraesCS1B01G263300 chr4B 90.654 107 10 0 2379 2485 265516007 265515901 3.300000e-30 143
24 TraesCS1B01G263300 chr4B 98.750 80 1 0 1 80 346530165 346530244 3.300000e-30 143
25 TraesCS1B01G263300 chr4B 92.079 101 8 0 2383 2483 524845598 524845698 3.300000e-30 143
26 TraesCS1B01G263300 chr3A 98.361 183 3 0 2994 3176 546607167 546607349 3.950000e-84 322
27 TraesCS1B01G263300 chr3A 98.734 79 1 0 1 79 256457018 256456940 1.190000e-29 141
28 TraesCS1B01G263300 chr3A 98.734 79 1 0 1 79 659769846 659769768 1.190000e-29 141
29 TraesCS1B01G263300 chr2A 98.750 80 1 0 1 80 652615783 652615862 3.300000e-30 143
30 TraesCS1B01G263300 chr2A 100.000 77 0 0 1 77 694374368 694374444 3.300000e-30 143
31 TraesCS1B01G263300 chr7A 91.262 103 9 0 2382 2484 704896218 704896116 1.190000e-29 141
32 TraesCS1B01G263300 chr6D 98.734 79 1 0 1 79 460408219 460408141 1.190000e-29 141
33 TraesCS1B01G263300 chr6D 87.395 119 11 4 2362 2479 200398695 200398810 1.990000e-27 134
34 TraesCS1B01G263300 chr5D 89.189 111 11 1 2376 2486 500862445 500862554 1.540000e-28 137
35 TraesCS1B01G263300 chr7B 86.885 122 12 4 2365 2483 591048783 591048663 1.990000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G263300 chr1B 462981966 462985141 3175 True 5866.0 5866 100.0000 1 3176 1 chr1B.!!$R1 3175
1 TraesCS1B01G263300 chr1B 462803500 462805140 1640 True 1069.0 1980 88.2915 957 2789 2 chr1B.!!$R2 1832
2 TraesCS1B01G263300 chr1D 344133919 344137541 3622 True 1092.5 3240 92.3035 108 2991 4 chr1D.!!$R1 2883
3 TraesCS1B01G263300 chr1A 443659396 443661358 1962 False 1219.0 2316 89.4865 957 2989 2 chr1A.!!$F1 2032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 373 0.033504 TTGCGAACCAGTCAGAGTCC 59.966 55.0 0.00 0.0 0.0 3.85 F
466 467 0.110056 CACTGTCTCATTGGCGCAAC 60.110 55.0 10.83 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 1990 0.034670 AGGATGCACTTCTCCAAGCC 60.035 55.0 6.83 0.0 33.75 4.35 R
2465 2553 0.106116 ACCATCTACTCCCTCCGTCC 60.106 60.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.595124 TTGTCGCTCTGTTGACTTCA 57.405 45.000 0.00 0.00 36.10 3.02
20 21 2.595124 TGTCGCTCTGTTGACTTCAA 57.405 45.000 0.00 0.00 36.10 2.69
21 22 2.899976 TGTCGCTCTGTTGACTTCAAA 58.100 42.857 0.00 0.00 37.63 2.69
22 23 2.607635 TGTCGCTCTGTTGACTTCAAAC 59.392 45.455 0.00 0.00 37.63 2.93
23 24 2.607635 GTCGCTCTGTTGACTTCAAACA 59.392 45.455 0.00 0.00 37.63 2.83
24 25 2.607635 TCGCTCTGTTGACTTCAAACAC 59.392 45.455 0.00 0.00 37.63 3.32
25 26 2.351418 CGCTCTGTTGACTTCAAACACA 59.649 45.455 0.00 0.00 37.63 3.72
26 27 3.002656 CGCTCTGTTGACTTCAAACACAT 59.997 43.478 0.00 0.00 37.63 3.21
27 28 4.531332 GCTCTGTTGACTTCAAACACATC 58.469 43.478 0.00 0.00 37.63 3.06
28 29 4.555511 GCTCTGTTGACTTCAAACACATCC 60.556 45.833 0.00 0.00 37.63 3.51
29 30 4.522114 TCTGTTGACTTCAAACACATCCA 58.478 39.130 0.00 0.00 37.63 3.41
30 31 4.576053 TCTGTTGACTTCAAACACATCCAG 59.424 41.667 0.00 0.00 37.63 3.86
31 32 3.066621 TGTTGACTTCAAACACATCCAGC 59.933 43.478 0.00 0.00 37.63 4.85
32 33 2.229792 TGACTTCAAACACATCCAGCC 58.770 47.619 0.00 0.00 0.00 4.85
33 34 2.229792 GACTTCAAACACATCCAGCCA 58.770 47.619 0.00 0.00 0.00 4.75
34 35 2.622942 GACTTCAAACACATCCAGCCAA 59.377 45.455 0.00 0.00 0.00 4.52
35 36 2.362077 ACTTCAAACACATCCAGCCAAC 59.638 45.455 0.00 0.00 0.00 3.77
36 37 1.327303 TCAAACACATCCAGCCAACC 58.673 50.000 0.00 0.00 0.00 3.77
37 38 0.318120 CAAACACATCCAGCCAACCC 59.682 55.000 0.00 0.00 0.00 4.11
38 39 0.831711 AAACACATCCAGCCAACCCC 60.832 55.000 0.00 0.00 0.00 4.95
39 40 1.729267 AACACATCCAGCCAACCCCT 61.729 55.000 0.00 0.00 0.00 4.79
40 41 1.379044 CACATCCAGCCAACCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
41 42 1.542375 ACATCCAGCCAACCCCTCT 60.542 57.895 0.00 0.00 0.00 3.69
42 43 1.077212 CATCCAGCCAACCCCTCTG 60.077 63.158 0.00 0.00 0.00 3.35
43 44 1.542375 ATCCAGCCAACCCCTCTGT 60.542 57.895 0.00 0.00 0.00 3.41
44 45 1.856539 ATCCAGCCAACCCCTCTGTG 61.857 60.000 0.00 0.00 0.00 3.66
45 46 2.034687 CAGCCAACCCCTCTGTGG 59.965 66.667 0.00 0.00 0.00 4.17
46 47 2.121963 AGCCAACCCCTCTGTGGA 60.122 61.111 0.00 0.00 38.35 4.02
47 48 1.774217 AGCCAACCCCTCTGTGGAA 60.774 57.895 0.00 0.00 38.35 3.53
48 49 1.142688 AGCCAACCCCTCTGTGGAAT 61.143 55.000 0.00 0.00 38.35 3.01
49 50 0.681243 GCCAACCCCTCTGTGGAATC 60.681 60.000 0.00 0.00 38.35 2.52
50 51 0.034089 CCAACCCCTCTGTGGAATCC 60.034 60.000 0.00 0.00 38.35 3.01
51 52 0.995024 CAACCCCTCTGTGGAATCCT 59.005 55.000 0.00 0.00 38.35 3.24
52 53 1.065126 CAACCCCTCTGTGGAATCCTC 60.065 57.143 0.00 0.00 38.35 3.71
53 54 0.419459 ACCCCTCTGTGGAATCCTCT 59.581 55.000 0.00 0.00 38.35 3.69
54 55 1.203492 ACCCCTCTGTGGAATCCTCTT 60.203 52.381 0.00 0.00 38.35 2.85
55 56 1.488393 CCCCTCTGTGGAATCCTCTTC 59.512 57.143 0.00 0.00 38.35 2.87
56 57 2.191400 CCCTCTGTGGAATCCTCTTCA 58.809 52.381 0.00 0.00 38.35 3.02
57 58 2.776536 CCCTCTGTGGAATCCTCTTCAT 59.223 50.000 0.00 0.00 38.35 2.57
58 59 3.181456 CCCTCTGTGGAATCCTCTTCATC 60.181 52.174 0.00 0.00 38.35 2.92
59 60 3.453717 CCTCTGTGGAATCCTCTTCATCA 59.546 47.826 0.00 0.00 38.35 3.07
60 61 4.102838 CCTCTGTGGAATCCTCTTCATCAT 59.897 45.833 0.00 0.00 38.35 2.45
61 62 5.306419 CCTCTGTGGAATCCTCTTCATCATA 59.694 44.000 0.00 0.00 38.35 2.15
62 63 6.013553 CCTCTGTGGAATCCTCTTCATCATAT 60.014 42.308 0.00 0.00 38.35 1.78
63 64 7.002250 TCTGTGGAATCCTCTTCATCATATC 57.998 40.000 0.00 0.00 0.00 1.63
64 65 6.556116 TCTGTGGAATCCTCTTCATCATATCA 59.444 38.462 0.00 0.00 0.00 2.15
65 66 7.071572 TCTGTGGAATCCTCTTCATCATATCAA 59.928 37.037 0.00 0.00 0.00 2.57
66 67 7.752638 TGTGGAATCCTCTTCATCATATCAAT 58.247 34.615 0.00 0.00 0.00 2.57
67 68 7.664318 TGTGGAATCCTCTTCATCATATCAATG 59.336 37.037 0.00 0.00 0.00 2.82
68 69 7.881751 GTGGAATCCTCTTCATCATATCAATGA 59.118 37.037 0.00 0.00 46.01 2.57
86 87 7.792374 TCAATGATATAGACCTCAACTTTGC 57.208 36.000 0.00 0.00 0.00 3.68
87 88 6.767902 TCAATGATATAGACCTCAACTTTGCC 59.232 38.462 0.00 0.00 0.00 4.52
88 89 5.036117 TGATATAGACCTCAACTTTGCCC 57.964 43.478 0.00 0.00 0.00 5.36
89 90 4.721776 TGATATAGACCTCAACTTTGCCCT 59.278 41.667 0.00 0.00 0.00 5.19
90 91 2.859165 TAGACCTCAACTTTGCCCTG 57.141 50.000 0.00 0.00 0.00 4.45
91 92 0.111253 AGACCTCAACTTTGCCCTGG 59.889 55.000 0.00 0.00 0.00 4.45
92 93 1.527433 GACCTCAACTTTGCCCTGGC 61.527 60.000 0.00 0.00 42.35 4.85
105 106 3.026630 GCCCTGGCAAAAACTAAGTTC 57.973 47.619 2.58 0.00 41.49 3.01
106 107 2.364002 GCCCTGGCAAAAACTAAGTTCA 59.636 45.455 2.58 0.00 41.49 3.18
125 126 2.030363 TCACATGGCAAAAACATCGACC 60.030 45.455 0.00 0.00 0.00 4.79
134 135 5.344933 GGCAAAAACATCGACCAAACTAATC 59.655 40.000 0.00 0.00 0.00 1.75
257 258 8.519492 TTACAAAAAGAATAGCAGCAACAATC 57.481 30.769 0.00 0.00 0.00 2.67
261 262 8.500773 CAAAAAGAATAGCAGCAACAATCAAAT 58.499 29.630 0.00 0.00 0.00 2.32
287 288 8.887036 AAGTCATTCCTAAAAATCAAAACCAC 57.113 30.769 0.00 0.00 0.00 4.16
288 289 8.250143 AGTCATTCCTAAAAATCAAAACCACT 57.750 30.769 0.00 0.00 0.00 4.00
289 290 8.143835 AGTCATTCCTAAAAATCAAAACCACTG 58.856 33.333 0.00 0.00 0.00 3.66
290 291 7.926018 GTCATTCCTAAAAATCAAAACCACTGT 59.074 33.333 0.00 0.00 0.00 3.55
291 292 8.141268 TCATTCCTAAAAATCAAAACCACTGTC 58.859 33.333 0.00 0.00 0.00 3.51
292 293 6.399639 TCCTAAAAATCAAAACCACTGTCC 57.600 37.500 0.00 0.00 0.00 4.02
293 294 5.894393 TCCTAAAAATCAAAACCACTGTCCA 59.106 36.000 0.00 0.00 0.00 4.02
294 295 5.983118 CCTAAAAATCAAAACCACTGTCCAC 59.017 40.000 0.00 0.00 0.00 4.02
295 296 5.675684 AAAAATCAAAACCACTGTCCACT 57.324 34.783 0.00 0.00 0.00 4.00
296 297 6.783708 AAAAATCAAAACCACTGTCCACTA 57.216 33.333 0.00 0.00 0.00 2.74
297 298 5.767816 AAATCAAAACCACTGTCCACTAC 57.232 39.130 0.00 0.00 0.00 2.73
298 299 3.916359 TCAAAACCACTGTCCACTACA 57.084 42.857 0.00 0.00 36.42 2.74
299 300 4.431416 TCAAAACCACTGTCCACTACAT 57.569 40.909 0.00 0.00 37.50 2.29
300 301 4.133820 TCAAAACCACTGTCCACTACATG 58.866 43.478 0.00 0.00 37.50 3.21
301 302 3.857157 AAACCACTGTCCACTACATGT 57.143 42.857 2.69 2.69 37.50 3.21
302 303 3.857157 AACCACTGTCCACTACATGTT 57.143 42.857 2.30 0.00 37.50 2.71
303 304 3.402628 ACCACTGTCCACTACATGTTC 57.597 47.619 2.30 0.00 37.50 3.18
304 305 2.703536 ACCACTGTCCACTACATGTTCA 59.296 45.455 2.30 0.00 37.50 3.18
305 306 3.067106 CCACTGTCCACTACATGTTCAC 58.933 50.000 2.30 0.00 37.50 3.18
306 307 3.067106 CACTGTCCACTACATGTTCACC 58.933 50.000 2.30 0.00 37.50 4.02
307 308 2.703536 ACTGTCCACTACATGTTCACCA 59.296 45.455 2.30 0.00 37.50 4.17
308 309 3.067106 CTGTCCACTACATGTTCACCAC 58.933 50.000 2.30 0.00 37.50 4.16
309 310 2.436173 TGTCCACTACATGTTCACCACA 59.564 45.455 2.30 0.00 40.71 4.17
310 311 2.806244 GTCCACTACATGTTCACCACAC 59.194 50.000 2.30 0.00 38.61 3.82
311 312 2.703536 TCCACTACATGTTCACCACACT 59.296 45.455 2.30 0.00 38.61 3.55
312 313 2.807967 CCACTACATGTTCACCACACTG 59.192 50.000 2.30 0.00 38.61 3.66
313 314 3.466836 CACTACATGTTCACCACACTGT 58.533 45.455 2.30 0.00 38.61 3.55
314 315 3.494626 CACTACATGTTCACCACACTGTC 59.505 47.826 2.30 0.00 38.61 3.51
315 316 1.967319 ACATGTTCACCACACTGTCC 58.033 50.000 0.00 0.00 38.61 4.02
316 317 1.490490 ACATGTTCACCACACTGTCCT 59.510 47.619 0.00 0.00 38.61 3.85
317 318 2.146342 CATGTTCACCACACTGTCCTC 58.854 52.381 0.00 0.00 38.61 3.71
318 319 1.496060 TGTTCACCACACTGTCCTCT 58.504 50.000 0.00 0.00 0.00 3.69
319 320 1.138859 TGTTCACCACACTGTCCTCTG 59.861 52.381 0.00 0.00 0.00 3.35
320 321 0.106708 TTCACCACACTGTCCTCTGC 59.893 55.000 0.00 0.00 0.00 4.26
321 322 1.048160 TCACCACACTGTCCTCTGCA 61.048 55.000 0.00 0.00 0.00 4.41
322 323 0.035881 CACCACACTGTCCTCTGCAT 59.964 55.000 0.00 0.00 0.00 3.96
323 324 0.767375 ACCACACTGTCCTCTGCATT 59.233 50.000 0.00 0.00 0.00 3.56
324 325 1.162698 CCACACTGTCCTCTGCATTG 58.837 55.000 0.00 0.00 0.00 2.82
325 326 1.162698 CACACTGTCCTCTGCATTGG 58.837 55.000 0.00 0.00 0.00 3.16
326 327 0.037303 ACACTGTCCTCTGCATTGGG 59.963 55.000 5.45 0.08 0.00 4.12
327 328 0.679002 CACTGTCCTCTGCATTGGGG 60.679 60.000 5.45 0.00 0.00 4.96
328 329 0.842030 ACTGTCCTCTGCATTGGGGA 60.842 55.000 5.45 0.00 0.00 4.81
329 330 0.549950 CTGTCCTCTGCATTGGGGAT 59.450 55.000 0.00 0.00 0.00 3.85
330 331 0.548031 TGTCCTCTGCATTGGGGATC 59.452 55.000 0.00 0.00 0.00 3.36
331 332 0.533755 GTCCTCTGCATTGGGGATCG 60.534 60.000 0.00 0.00 0.00 3.69
332 333 0.690744 TCCTCTGCATTGGGGATCGA 60.691 55.000 5.45 0.00 0.00 3.59
333 334 0.250209 CCTCTGCATTGGGGATCGAG 60.250 60.000 0.00 0.00 0.00 4.04
334 335 0.883814 CTCTGCATTGGGGATCGAGC 60.884 60.000 0.00 0.00 0.00 5.03
335 336 1.153107 CTGCATTGGGGATCGAGCA 60.153 57.895 1.84 0.00 0.00 4.26
336 337 1.153107 TGCATTGGGGATCGAGCAG 60.153 57.895 1.84 0.00 0.00 4.24
337 338 1.146930 GCATTGGGGATCGAGCAGA 59.853 57.895 1.84 0.00 0.00 4.26
338 339 0.464373 GCATTGGGGATCGAGCAGAA 60.464 55.000 1.84 0.00 0.00 3.02
339 340 2.018644 GCATTGGGGATCGAGCAGAAA 61.019 52.381 1.84 0.00 0.00 2.52
340 341 1.672881 CATTGGGGATCGAGCAGAAAC 59.327 52.381 1.84 0.00 0.00 2.78
341 342 0.035439 TTGGGGATCGAGCAGAAACC 60.035 55.000 1.84 0.00 0.00 3.27
342 343 0.909610 TGGGGATCGAGCAGAAACCT 60.910 55.000 1.84 0.00 32.56 3.50
343 344 0.179070 GGGGATCGAGCAGAAACCTC 60.179 60.000 1.84 0.00 32.56 3.85
344 345 0.537188 GGGATCGAGCAGAAACCTCA 59.463 55.000 1.84 0.00 32.56 3.86
345 346 1.646189 GGATCGAGCAGAAACCTCAC 58.354 55.000 1.84 0.00 0.00 3.51
346 347 1.646189 GATCGAGCAGAAACCTCACC 58.354 55.000 0.00 0.00 0.00 4.02
347 348 0.976641 ATCGAGCAGAAACCTCACCA 59.023 50.000 0.00 0.00 0.00 4.17
348 349 0.318441 TCGAGCAGAAACCTCACCAG 59.682 55.000 0.00 0.00 0.00 4.00
349 350 1.294659 CGAGCAGAAACCTCACCAGC 61.295 60.000 0.00 0.00 0.00 4.85
350 351 0.036022 GAGCAGAAACCTCACCAGCT 59.964 55.000 0.00 0.00 0.00 4.24
351 352 0.475906 AGCAGAAACCTCACCAGCTT 59.524 50.000 0.00 0.00 0.00 3.74
352 353 1.133668 AGCAGAAACCTCACCAGCTTT 60.134 47.619 0.00 0.00 0.00 3.51
353 354 1.683385 GCAGAAACCTCACCAGCTTTT 59.317 47.619 0.00 0.00 0.00 2.27
354 355 2.101415 GCAGAAACCTCACCAGCTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
355 356 3.709987 CAGAAACCTCACCAGCTTTTTG 58.290 45.455 0.00 0.00 0.00 2.44
356 357 2.101415 AGAAACCTCACCAGCTTTTTGC 59.899 45.455 0.00 0.00 43.29 3.68
366 367 3.936585 GCTTTTTGCGAACCAGTCA 57.063 47.368 0.00 0.00 0.00 3.41
367 368 1.758783 GCTTTTTGCGAACCAGTCAG 58.241 50.000 0.00 0.00 0.00 3.51
368 369 1.333619 GCTTTTTGCGAACCAGTCAGA 59.666 47.619 0.00 0.00 0.00 3.27
369 370 2.603173 GCTTTTTGCGAACCAGTCAGAG 60.603 50.000 0.00 0.00 0.00 3.35
370 371 2.325583 TTTTGCGAACCAGTCAGAGT 57.674 45.000 0.00 0.00 0.00 3.24
371 372 1.865865 TTTGCGAACCAGTCAGAGTC 58.134 50.000 0.00 0.00 0.00 3.36
372 373 0.033504 TTGCGAACCAGTCAGAGTCC 59.966 55.000 0.00 0.00 0.00 3.85
373 374 0.827925 TGCGAACCAGTCAGAGTCCT 60.828 55.000 0.00 0.00 0.00 3.85
374 375 1.174783 GCGAACCAGTCAGAGTCCTA 58.825 55.000 0.00 0.00 0.00 2.94
375 376 1.133407 GCGAACCAGTCAGAGTCCTAG 59.867 57.143 0.00 0.00 0.00 3.02
376 377 2.712709 CGAACCAGTCAGAGTCCTAGA 58.287 52.381 0.00 0.00 0.00 2.43
377 378 3.283751 CGAACCAGTCAGAGTCCTAGAT 58.716 50.000 0.00 0.00 0.00 1.98
378 379 3.314080 CGAACCAGTCAGAGTCCTAGATC 59.686 52.174 0.00 0.00 0.00 2.75
379 380 3.306472 ACCAGTCAGAGTCCTAGATCC 57.694 52.381 0.00 0.00 0.00 3.36
380 381 2.091555 ACCAGTCAGAGTCCTAGATCCC 60.092 54.545 0.00 0.00 0.00 3.85
381 382 2.593026 CAGTCAGAGTCCTAGATCCCC 58.407 57.143 0.00 0.00 0.00 4.81
382 383 2.176798 CAGTCAGAGTCCTAGATCCCCT 59.823 54.545 0.00 0.00 0.00 4.79
383 384 2.176798 AGTCAGAGTCCTAGATCCCCTG 59.823 54.545 0.00 0.00 0.00 4.45
384 385 2.091555 GTCAGAGTCCTAGATCCCCTGT 60.092 54.545 0.00 0.00 0.00 4.00
385 386 2.587777 TCAGAGTCCTAGATCCCCTGTT 59.412 50.000 0.00 0.00 0.00 3.16
386 387 2.962421 CAGAGTCCTAGATCCCCTGTTC 59.038 54.545 0.00 0.00 0.00 3.18
387 388 2.587777 AGAGTCCTAGATCCCCTGTTCA 59.412 50.000 0.00 0.00 0.00 3.18
388 389 2.696187 GAGTCCTAGATCCCCTGTTCAC 59.304 54.545 0.00 0.00 0.00 3.18
389 390 1.763545 GTCCTAGATCCCCTGTTCACC 59.236 57.143 0.00 0.00 0.00 4.02
390 391 1.132500 CCTAGATCCCCTGTTCACCC 58.868 60.000 0.00 0.00 0.00 4.61
391 392 1.132500 CTAGATCCCCTGTTCACCCC 58.868 60.000 0.00 0.00 0.00 4.95
392 393 0.327191 TAGATCCCCTGTTCACCCCC 60.327 60.000 0.00 0.00 0.00 5.40
393 394 3.015145 ATCCCCTGTTCACCCCCG 61.015 66.667 0.00 0.00 0.00 5.73
411 412 2.354188 CGACGACCGCAACACAGA 60.354 61.111 0.00 0.00 0.00 3.41
412 413 2.645510 CGACGACCGCAACACAGAC 61.646 63.158 0.00 0.00 0.00 3.51
413 414 1.590525 GACGACCGCAACACAGACA 60.591 57.895 0.00 0.00 0.00 3.41
414 415 0.944311 GACGACCGCAACACAGACAT 60.944 55.000 0.00 0.00 0.00 3.06
415 416 1.221466 ACGACCGCAACACAGACATG 61.221 55.000 0.00 0.00 0.00 3.21
416 417 1.868997 GACCGCAACACAGACATGG 59.131 57.895 0.00 0.00 0.00 3.66
417 418 0.602638 GACCGCAACACAGACATGGA 60.603 55.000 0.00 0.00 0.00 3.41
418 419 0.603707 ACCGCAACACAGACATGGAG 60.604 55.000 0.00 0.00 0.00 3.86
419 420 0.603707 CCGCAACACAGACATGGAGT 60.604 55.000 0.00 0.00 0.00 3.85
420 421 0.514255 CGCAACACAGACATGGAGTG 59.486 55.000 11.40 11.40 39.12 3.51
421 422 0.877071 GCAACACAGACATGGAGTGG 59.123 55.000 15.69 3.91 37.58 4.00
422 423 1.527034 CAACACAGACATGGAGTGGG 58.473 55.000 15.69 5.83 37.58 4.61
423 424 0.250901 AACACAGACATGGAGTGGGC 60.251 55.000 15.69 0.00 37.58 5.36
424 425 1.130054 ACACAGACATGGAGTGGGCT 61.130 55.000 15.69 0.00 37.58 5.19
425 426 0.675837 CACAGACATGGAGTGGGCTG 60.676 60.000 0.00 0.00 39.09 4.85
426 427 1.748122 CAGACATGGAGTGGGCTGC 60.748 63.158 0.00 0.00 30.96 5.25
427 428 2.439156 GACATGGAGTGGGCTGCC 60.439 66.667 11.05 11.05 31.52 4.85
428 429 3.259314 ACATGGAGTGGGCTGCCA 61.259 61.111 22.05 3.69 35.91 4.92
429 430 2.753043 CATGGAGTGGGCTGCCAC 60.753 66.667 22.05 16.04 40.64 5.01
430 431 4.052518 ATGGAGTGGGCTGCCACC 62.053 66.667 22.05 17.01 41.19 4.61
443 444 2.581354 CCACCGGAGAAGAGGCAG 59.419 66.667 9.46 0.00 0.00 4.85
466 467 0.110056 CACTGTCTCATTGGCGCAAC 60.110 55.000 10.83 0.00 0.00 4.17
491 492 2.818274 GGATCCACCAACGACGGC 60.818 66.667 6.95 0.00 38.79 5.68
510 511 0.993746 CTTGCGCTGCGTCTCAAAAC 60.994 55.000 24.04 4.48 0.00 2.43
511 512 1.710103 TTGCGCTGCGTCTCAAAACA 61.710 50.000 24.04 7.27 0.00 2.83
587 588 2.822701 GCCTTAAACGGGAGCGGG 60.823 66.667 0.00 0.00 0.00 6.13
590 591 3.945304 CTTAAACGGGAGCGGGCGT 62.945 63.158 0.00 0.00 0.00 5.68
665 666 2.591715 GTGTGCGGCAGGACTTGT 60.592 61.111 10.16 0.00 39.62 3.16
707 714 3.522731 CCTGAGGAGTCGGAGGCG 61.523 72.222 0.00 0.00 36.95 5.52
752 759 0.864455 GAGGCGTCATTCTGCATAGC 59.136 55.000 0.52 0.00 0.00 2.97
800 807 1.409982 GCGAGCAGAGCGAGAGAAAC 61.410 60.000 0.00 0.00 0.00 2.78
891 898 1.065551 GGCCGAATTGATAAGTGGCAC 59.934 52.381 10.29 10.29 44.21 5.01
892 899 1.742831 GCCGAATTGATAAGTGGCACA 59.257 47.619 21.41 0.00 42.03 4.57
933 940 3.912907 CCGCGAAGGTATCCGGCT 61.913 66.667 8.23 0.00 35.87 5.52
941 948 1.049289 AGGTATCCGGCTCCCTTGTC 61.049 60.000 0.00 0.00 0.00 3.18
1019 1040 1.913951 ATGTTCGCCTCCATCTGCCA 61.914 55.000 0.00 0.00 0.00 4.92
1057 1078 1.000938 GAATCCATCAAATCGCTGGCC 60.001 52.381 0.00 0.00 30.41 5.36
1288 1309 4.441695 TGCGCGCTCTCCTCAAGG 62.442 66.667 33.29 0.00 0.00 3.61
1775 1796 0.909623 ATGTCCGGTGTTAAGAGGGG 59.090 55.000 0.00 0.00 0.00 4.79
2394 2429 3.952967 AGAAACATAGTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
2395 2430 2.361643 ACATAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
2397 2432 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
2403 2438 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2404 2439 2.026542 ACTCCCTCCGTCCCAAAATAAC 60.027 50.000 0.00 0.00 0.00 1.89
2405 2440 2.238898 CTCCCTCCGTCCCAAAATAACT 59.761 50.000 0.00 0.00 0.00 2.24
2407 2442 2.290705 CCCTCCGTCCCAAAATAACTGT 60.291 50.000 0.00 0.00 0.00 3.55
2409 2444 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2410 2445 3.933332 CTCCGTCCCAAAATAACTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2411 2446 3.325425 TCCGTCCCAAAATAACTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2413 2501 4.083484 CCGTCCCAAAATAACTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2418 2506 6.605594 TCCCAAAATAACTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 0.00 2.83
2419 2507 7.776030 TCCCAAAATAACTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 0.00 2.41
2422 2510 8.402472 CAAAATAACTGTCTCAACTTTGTACCA 58.598 33.333 0.00 0.00 0.00 3.25
2425 2513 9.436957 AATAACTGTCTCAACTTTGTACCATAG 57.563 33.333 0.00 0.00 0.00 2.23
2426 2514 5.238583 ACTGTCTCAACTTTGTACCATAGC 58.761 41.667 0.00 0.00 0.00 2.97
2429 2517 7.093289 ACTGTCTCAACTTTGTACCATAGCTAT 60.093 37.037 0.00 0.00 0.00 2.97
2431 2519 8.755028 TGTCTCAACTTTGTACCATAGCTATTA 58.245 33.333 2.64 0.00 0.00 0.98
2434 2522 9.378551 CTCAACTTTGTACCATAGCTATTACAA 57.621 33.333 20.01 20.01 33.62 2.41
2455 2543 9.616156 TTACAAATTTGTACTAAGGTTGAGACA 57.384 29.630 26.72 7.79 42.84 3.41
2456 2544 7.927048 ACAAATTTGTACTAAGGTTGAGACAC 58.073 34.615 22.10 0.00 40.16 3.67
2457 2545 7.773690 ACAAATTTGTACTAAGGTTGAGACACT 59.226 33.333 22.10 0.00 40.16 3.55
2463 2551 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
2465 2553 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
2466 2554 6.715264 ACTAAGGTTGAGACACTTATTTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
2468 2556 5.070685 AGGTTGAGACACTTATTTTGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
2501 2598 8.812972 AGTAGATGGTTTGTTGTTGTATAGAGA 58.187 33.333 0.00 0.00 0.00 3.10
2555 2672 8.514330 TGTATGTTCAACCAGTTCTTTTAACT 57.486 30.769 0.00 0.00 0.00 2.24
2596 2713 3.364889 TTATCCCGATAACTCTGTGCG 57.635 47.619 0.00 0.00 0.00 5.34
2633 2750 1.535462 GGAACGAACCCTGTGTTGATG 59.465 52.381 0.00 0.00 37.29 3.07
2670 2787 8.762645 ACTCTTTCCACTACTCATATGAATGAA 58.237 33.333 6.90 0.00 41.57 2.57
2671 2788 8.948631 TCTTTCCACTACTCATATGAATGAAC 57.051 34.615 6.90 0.00 41.57 3.18
2672 2789 8.762645 TCTTTCCACTACTCATATGAATGAACT 58.237 33.333 6.90 0.00 41.57 3.01
2709 3710 9.134734 TGGTTCTTTCAAATAAATAAATGTCGC 57.865 29.630 0.00 0.00 0.00 5.19
2716 3717 7.749808 TCAAATAAATAAATGTCGCCGTGTTA 58.250 30.769 0.00 0.00 0.00 2.41
2722 3723 0.535335 ATGTCGCCGTGTTATCCAGT 59.465 50.000 0.00 0.00 0.00 4.00
2741 3742 4.122776 CAGTGTAGAGAACTTGCACTTGT 58.877 43.478 0.00 0.00 38.26 3.16
2749 3750 5.241728 AGAGAACTTGCACTTGTTATTTCCC 59.758 40.000 0.00 0.00 0.00 3.97
2760 3761 6.329197 CACTTGTTATTTCCCCTCCCTAGATA 59.671 42.308 0.00 0.00 0.00 1.98
2773 3774 5.126869 CCTCCCTAGATATAGTGCTGATGTG 59.873 48.000 0.00 0.00 0.00 3.21
2776 3777 7.414266 TCCCTAGATATAGTGCTGATGTGTAT 58.586 38.462 0.00 0.00 0.00 2.29
2778 3779 7.413644 CCTAGATATAGTGCTGATGTGTATCG 58.586 42.308 0.00 0.00 36.04 2.92
2780 3781 7.454260 AGATATAGTGCTGATGTGTATCGAA 57.546 36.000 0.00 0.00 36.04 3.71
2781 3782 7.309177 AGATATAGTGCTGATGTGTATCGAAC 58.691 38.462 0.00 0.00 36.04 3.95
2782 3783 3.592898 AGTGCTGATGTGTATCGAACA 57.407 42.857 0.00 0.00 36.04 3.18
2783 3784 3.515630 AGTGCTGATGTGTATCGAACAG 58.484 45.455 0.00 0.00 39.29 3.16
2784 3785 3.193479 AGTGCTGATGTGTATCGAACAGA 59.807 43.478 0.00 0.00 39.29 3.41
2785 3786 3.549471 GTGCTGATGTGTATCGAACAGAG 59.451 47.826 0.00 0.00 39.29 3.35
2786 3787 3.119291 GCTGATGTGTATCGAACAGAGG 58.881 50.000 0.00 0.00 39.29 3.69
2787 3788 3.429547 GCTGATGTGTATCGAACAGAGGT 60.430 47.826 0.00 0.00 39.29 3.85
2788 3789 4.108336 CTGATGTGTATCGAACAGAGGTG 58.892 47.826 0.00 0.00 39.29 4.00
2789 3790 3.509967 TGATGTGTATCGAACAGAGGTGT 59.490 43.478 0.00 0.00 39.29 4.16
2790 3791 3.297830 TGTGTATCGAACAGAGGTGTG 57.702 47.619 0.00 0.00 39.29 3.82
2791 3792 2.626266 TGTGTATCGAACAGAGGTGTGT 59.374 45.455 0.00 0.00 39.29 3.72
2792 3793 2.987149 GTGTATCGAACAGAGGTGTGTG 59.013 50.000 0.00 0.00 39.29 3.82
2793 3794 2.626266 TGTATCGAACAGAGGTGTGTGT 59.374 45.455 0.00 0.00 36.84 3.72
2794 3795 3.822167 TGTATCGAACAGAGGTGTGTGTA 59.178 43.478 0.00 0.00 36.84 2.90
2795 3796 3.577649 ATCGAACAGAGGTGTGTGTAG 57.422 47.619 0.00 0.00 36.84 2.74
2796 3797 1.611977 TCGAACAGAGGTGTGTGTAGG 59.388 52.381 0.00 0.00 36.84 3.18
2797 3798 1.340248 CGAACAGAGGTGTGTGTAGGT 59.660 52.381 0.00 0.00 36.84 3.08
2798 3799 2.607282 CGAACAGAGGTGTGTGTAGGTC 60.607 54.545 0.00 0.00 36.84 3.85
2799 3800 0.959553 ACAGAGGTGTGTGTAGGTCG 59.040 55.000 0.00 0.00 34.75 4.79
2800 3801 0.243907 CAGAGGTGTGTGTAGGTCGG 59.756 60.000 0.00 0.00 0.00 4.79
2801 3802 1.080025 GAGGTGTGTGTAGGTCGGC 60.080 63.158 0.00 0.00 0.00 5.54
2802 3803 2.047560 GGTGTGTGTAGGTCGGCC 60.048 66.667 0.00 0.00 0.00 6.13
2803 3804 2.738480 GTGTGTGTAGGTCGGCCA 59.262 61.111 9.71 0.00 37.19 5.36
2804 3805 1.295423 GTGTGTGTAGGTCGGCCAT 59.705 57.895 9.71 0.00 37.19 4.40
2805 3806 0.321298 GTGTGTGTAGGTCGGCCATT 60.321 55.000 9.71 0.00 37.19 3.16
2806 3807 0.398696 TGTGTGTAGGTCGGCCATTT 59.601 50.000 9.71 0.00 37.19 2.32
2807 3808 0.802494 GTGTGTAGGTCGGCCATTTG 59.198 55.000 9.71 0.00 37.19 2.32
2808 3809 0.958382 TGTGTAGGTCGGCCATTTGC 60.958 55.000 9.71 0.00 37.19 3.68
2809 3810 0.958382 GTGTAGGTCGGCCATTTGCA 60.958 55.000 9.71 0.00 43.89 4.08
2810 3811 0.250945 TGTAGGTCGGCCATTTGCAA 60.251 50.000 9.71 0.00 43.89 4.08
2811 3812 0.451783 GTAGGTCGGCCATTTGCAAG 59.548 55.000 9.71 0.00 43.89 4.01
2812 3813 0.037590 TAGGTCGGCCATTTGCAAGT 59.962 50.000 9.71 0.00 43.89 3.16
2813 3814 0.827507 AGGTCGGCCATTTGCAAGTT 60.828 50.000 9.71 0.00 43.89 2.66
2814 3815 0.388520 GGTCGGCCATTTGCAAGTTC 60.389 55.000 0.00 0.00 43.89 3.01
2815 3816 0.313672 GTCGGCCATTTGCAAGTTCA 59.686 50.000 2.24 0.00 43.89 3.18
2816 3817 1.035923 TCGGCCATTTGCAAGTTCAA 58.964 45.000 2.24 0.00 43.89 2.69
2817 3818 1.000385 TCGGCCATTTGCAAGTTCAAG 60.000 47.619 2.24 0.00 43.89 3.02
2818 3819 1.269726 CGGCCATTTGCAAGTTCAAGT 60.270 47.619 2.24 0.00 43.89 3.16
2819 3820 2.407090 GGCCATTTGCAAGTTCAAGTC 58.593 47.619 0.00 0.00 43.89 3.01
2820 3821 2.036346 GGCCATTTGCAAGTTCAAGTCT 59.964 45.455 0.00 0.00 43.89 3.24
2821 3822 3.054878 GCCATTTGCAAGTTCAAGTCTG 58.945 45.455 0.00 0.00 40.77 3.51
2822 3823 3.491447 GCCATTTGCAAGTTCAAGTCTGT 60.491 43.478 0.00 0.00 40.77 3.41
2823 3824 4.261572 GCCATTTGCAAGTTCAAGTCTGTA 60.262 41.667 0.00 0.00 40.77 2.74
2824 3825 5.735922 GCCATTTGCAAGTTCAAGTCTGTAA 60.736 40.000 0.00 0.00 40.77 2.41
2825 3826 6.449698 CCATTTGCAAGTTCAAGTCTGTAAT 58.550 36.000 0.00 0.00 0.00 1.89
2826 3827 6.364165 CCATTTGCAAGTTCAAGTCTGTAATG 59.636 38.462 0.00 0.00 0.00 1.90
2827 3828 6.691754 TTTGCAAGTTCAAGTCTGTAATGA 57.308 33.333 0.00 0.00 0.00 2.57
2828 3829 6.882610 TTGCAAGTTCAAGTCTGTAATGAT 57.117 33.333 0.00 0.00 0.00 2.45
2829 3830 6.245115 TGCAAGTTCAAGTCTGTAATGATG 57.755 37.500 0.00 0.00 0.00 3.07
2830 3831 5.091431 GCAAGTTCAAGTCTGTAATGATGC 58.909 41.667 0.00 0.00 0.00 3.91
2831 3832 5.319139 CAAGTTCAAGTCTGTAATGATGCG 58.681 41.667 0.00 0.00 0.00 4.73
2832 3833 4.569943 AGTTCAAGTCTGTAATGATGCGT 58.430 39.130 0.00 0.00 0.00 5.24
2833 3834 5.720202 AGTTCAAGTCTGTAATGATGCGTA 58.280 37.500 0.00 0.00 0.00 4.42
2834 3835 6.163476 AGTTCAAGTCTGTAATGATGCGTAA 58.837 36.000 0.00 0.00 0.00 3.18
2835 3836 6.649141 AGTTCAAGTCTGTAATGATGCGTAAA 59.351 34.615 0.00 0.00 0.00 2.01
2836 3837 7.172532 AGTTCAAGTCTGTAATGATGCGTAAAA 59.827 33.333 0.00 0.00 0.00 1.52
2837 3838 7.428282 TCAAGTCTGTAATGATGCGTAAAAA 57.572 32.000 0.00 0.00 0.00 1.94
2856 3857 4.344938 AAAATGGATTATGTGGGTGGGA 57.655 40.909 0.00 0.00 0.00 4.37
2857 3858 4.557899 AAATGGATTATGTGGGTGGGAT 57.442 40.909 0.00 0.00 0.00 3.85
2858 3859 3.814504 ATGGATTATGTGGGTGGGATC 57.185 47.619 0.00 0.00 0.00 3.36
2876 3877 4.038402 GGGATCATGAACTTGCTATTTGGG 59.962 45.833 0.00 0.00 0.00 4.12
2885 3888 6.014669 TGAACTTGCTATTTGGGCTAAAATGT 60.015 34.615 0.00 0.00 32.16 2.71
2886 3889 5.965922 ACTTGCTATTTGGGCTAAAATGTC 58.034 37.500 0.00 0.00 32.16 3.06
2892 3895 6.426937 GCTATTTGGGCTAAAATGTCGATCTA 59.573 38.462 0.00 0.00 32.16 1.98
2900 3903 6.639686 GGCTAAAATGTCGATCTATTCACGTA 59.360 38.462 0.00 0.00 0.00 3.57
2904 3907 5.752892 ATGTCGATCTATTCACGTACAGT 57.247 39.130 0.00 0.00 0.00 3.55
2907 3910 7.255491 TGTCGATCTATTCACGTACAGTAAT 57.745 36.000 0.00 0.00 0.00 1.89
2908 3911 8.369218 TGTCGATCTATTCACGTACAGTAATA 57.631 34.615 0.00 0.00 0.00 0.98
2909 3912 8.996271 TGTCGATCTATTCACGTACAGTAATAT 58.004 33.333 0.00 0.00 0.00 1.28
2910 3913 9.263626 GTCGATCTATTCACGTACAGTAATATG 57.736 37.037 0.00 0.00 0.00 1.78
2954 3963 6.547396 ATCCTAGAGAGACACCCCTATTTA 57.453 41.667 0.00 0.00 0.00 1.40
2958 3967 4.897051 AGAGAGACACCCCTATTTATGGT 58.103 43.478 0.00 0.00 0.00 3.55
2964 3973 5.734634 AGACACCCCTATTTATGGTAAGGTT 59.265 40.000 0.00 0.00 0.00 3.50
2971 3980 9.297037 CCCCTATTTATGGTAAGGTTTATTCTG 57.703 37.037 0.00 0.00 0.00 3.02
2985 3994 1.577736 ATTCTGGAGAGACACCCCTG 58.422 55.000 0.00 0.00 0.00 4.45
2989 3998 0.191064 TGGAGAGACACCCCTGTTCT 59.809 55.000 0.00 0.00 0.00 3.01
2990 3999 1.353091 GGAGAGACACCCCTGTTCTT 58.647 55.000 0.00 0.00 0.00 2.52
2991 4000 1.700186 GGAGAGACACCCCTGTTCTTT 59.300 52.381 0.00 0.00 0.00 2.52
2992 4001 2.106684 GGAGAGACACCCCTGTTCTTTT 59.893 50.000 0.00 0.00 0.00 2.27
2993 4002 3.435169 GGAGAGACACCCCTGTTCTTTTT 60.435 47.826 0.00 0.00 0.00 1.94
3018 4027 3.477210 TTTTTGAATTTTCACCGGGGG 57.523 42.857 2.42 0.00 36.83 5.40
3019 4028 2.383442 TTTGAATTTTCACCGGGGGA 57.617 45.000 2.42 0.00 36.83 4.81
3020 4029 1.917872 TTGAATTTTCACCGGGGGAG 58.082 50.000 2.42 0.00 36.83 4.30
3021 4030 0.039035 TGAATTTTCACCGGGGGAGG 59.961 55.000 2.42 0.00 31.01 4.30
3022 4031 0.330267 GAATTTTCACCGGGGGAGGA 59.670 55.000 2.42 0.00 34.73 3.71
3023 4032 0.331616 AATTTTCACCGGGGGAGGAG 59.668 55.000 2.42 0.00 34.73 3.69
3024 4033 1.571773 ATTTTCACCGGGGGAGGAGG 61.572 60.000 2.42 0.00 34.73 4.30
3025 4034 4.733725 TTCACCGGGGGAGGAGGG 62.734 72.222 2.42 0.00 34.73 4.30
3044 4053 3.721706 GAGCCCCTCCACCACCTG 61.722 72.222 0.00 0.00 0.00 4.00
3045 4054 4.270153 AGCCCCTCCACCACCTGA 62.270 66.667 0.00 0.00 0.00 3.86
3046 4055 3.256960 GCCCCTCCACCACCTGAA 61.257 66.667 0.00 0.00 0.00 3.02
3047 4056 2.616458 GCCCCTCCACCACCTGAAT 61.616 63.158 0.00 0.00 0.00 2.57
3048 4057 2.087248 CCCCTCCACCACCTGAATT 58.913 57.895 0.00 0.00 0.00 2.17
3049 4058 1.295020 CCCCTCCACCACCTGAATTA 58.705 55.000 0.00 0.00 0.00 1.40
3050 4059 1.852965 CCCCTCCACCACCTGAATTAT 59.147 52.381 0.00 0.00 0.00 1.28
3051 4060 3.053077 CCCCTCCACCACCTGAATTATA 58.947 50.000 0.00 0.00 0.00 0.98
3052 4061 3.657727 CCCCTCCACCACCTGAATTATAT 59.342 47.826 0.00 0.00 0.00 0.86
3053 4062 4.106341 CCCCTCCACCACCTGAATTATATT 59.894 45.833 0.00 0.00 0.00 1.28
3054 4063 5.316987 CCCTCCACCACCTGAATTATATTC 58.683 45.833 0.00 0.00 0.00 1.75
3055 4064 5.163099 CCCTCCACCACCTGAATTATATTCA 60.163 44.000 2.47 2.47 0.00 2.57
3056 4065 6.467775 CCCTCCACCACCTGAATTATATTCAT 60.468 42.308 2.84 0.00 0.00 2.57
3057 4066 7.006509 CCTCCACCACCTGAATTATATTCATT 58.993 38.462 2.84 0.00 0.00 2.57
3058 4067 7.506938 CCTCCACCACCTGAATTATATTCATTT 59.493 37.037 2.84 0.00 0.00 2.32
3059 4068 8.236585 TCCACCACCTGAATTATATTCATTTG 57.763 34.615 2.84 3.85 0.00 2.32
3060 4069 6.925165 CCACCACCTGAATTATATTCATTTGC 59.075 38.462 2.84 0.00 0.00 3.68
3061 4070 6.925165 CACCACCTGAATTATATTCATTTGCC 59.075 38.462 2.84 0.00 0.00 4.52
3062 4071 6.840705 ACCACCTGAATTATATTCATTTGCCT 59.159 34.615 2.84 0.00 0.00 4.75
3063 4072 8.004215 ACCACCTGAATTATATTCATTTGCCTA 58.996 33.333 2.84 0.00 0.00 3.93
3064 4073 9.028284 CCACCTGAATTATATTCATTTGCCTAT 57.972 33.333 2.84 0.00 0.00 2.57
3092 4101 1.435577 GCAGCCTTTTTGCAAGATGG 58.564 50.000 15.41 15.41 41.17 3.51
3093 4102 1.942586 GCAGCCTTTTTGCAAGATGGG 60.943 52.381 19.64 12.60 41.17 4.00
3094 4103 1.345415 CAGCCTTTTTGCAAGATGGGT 59.655 47.619 17.64 17.64 0.00 4.51
3095 4104 2.049372 AGCCTTTTTGCAAGATGGGTT 58.951 42.857 17.64 6.84 0.00 4.11
3096 4105 2.037641 AGCCTTTTTGCAAGATGGGTTC 59.962 45.455 17.64 5.62 0.00 3.62
3097 4106 2.224257 GCCTTTTTGCAAGATGGGTTCA 60.224 45.455 19.64 0.00 0.00 3.18
3098 4107 3.743899 GCCTTTTTGCAAGATGGGTTCAA 60.744 43.478 19.64 0.00 0.00 2.69
3099 4108 4.450053 CCTTTTTGCAAGATGGGTTCAAA 58.550 39.130 12.68 1.37 0.00 2.69
3100 4109 5.065235 CCTTTTTGCAAGATGGGTTCAAAT 58.935 37.500 12.68 0.00 0.00 2.32
3101 4110 5.049267 CCTTTTTGCAAGATGGGTTCAAATG 60.049 40.000 12.68 0.00 0.00 2.32
3102 4111 4.952071 TTTGCAAGATGGGTTCAAATGA 57.048 36.364 0.00 0.00 0.00 2.57
3103 4112 4.952071 TTGCAAGATGGGTTCAAATGAA 57.048 36.364 0.00 0.00 0.00 2.57
3117 4126 6.389906 GTTCAAATGAACCAGAATTACAGGG 58.610 40.000 14.00 0.00 46.42 4.45
3118 4127 5.016173 TCAAATGAACCAGAATTACAGGGG 58.984 41.667 0.00 0.00 0.00 4.79
3119 4128 3.669939 ATGAACCAGAATTACAGGGGG 57.330 47.619 0.00 0.00 0.00 5.40
3120 4129 2.638325 TGAACCAGAATTACAGGGGGA 58.362 47.619 0.00 0.00 0.00 4.81
3121 4130 2.307686 TGAACCAGAATTACAGGGGGAC 59.692 50.000 0.00 0.00 0.00 4.46
3122 4131 2.053747 ACCAGAATTACAGGGGGACA 57.946 50.000 0.00 0.00 0.00 4.02
3123 4132 1.633945 ACCAGAATTACAGGGGGACAC 59.366 52.381 0.00 0.00 0.00 3.67
3124 4133 1.406887 CCAGAATTACAGGGGGACACG 60.407 57.143 0.00 0.00 0.00 4.49
3125 4134 0.909623 AGAATTACAGGGGGACACGG 59.090 55.000 0.00 0.00 0.00 4.94
3126 4135 0.906775 GAATTACAGGGGGACACGGA 59.093 55.000 0.00 0.00 0.00 4.69
3127 4136 1.279846 GAATTACAGGGGGACACGGAA 59.720 52.381 0.00 0.00 0.00 4.30
3128 4137 0.909623 ATTACAGGGGGACACGGAAG 59.090 55.000 0.00 0.00 0.00 3.46
3129 4138 0.178926 TTACAGGGGGACACGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
3130 4139 0.178926 TACAGGGGGACACGGAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
3131 4140 1.296715 CAGGGGGACACGGAAGAAG 59.703 63.158 0.00 0.00 0.00 2.85
3132 4141 1.157751 AGGGGGACACGGAAGAAGA 59.842 57.895 0.00 0.00 0.00 2.87
3133 4142 0.905337 AGGGGGACACGGAAGAAGAG 60.905 60.000 0.00 0.00 0.00 2.85
3134 4143 0.903454 GGGGGACACGGAAGAAGAGA 60.903 60.000 0.00 0.00 0.00 3.10
3135 4144 1.196012 GGGGACACGGAAGAAGAGAT 58.804 55.000 0.00 0.00 0.00 2.75
3136 4145 2.385803 GGGGACACGGAAGAAGAGATA 58.614 52.381 0.00 0.00 0.00 1.98
3137 4146 2.764572 GGGGACACGGAAGAAGAGATAA 59.235 50.000 0.00 0.00 0.00 1.75
3138 4147 3.197116 GGGGACACGGAAGAAGAGATAAA 59.803 47.826 0.00 0.00 0.00 1.40
3139 4148 4.434520 GGGACACGGAAGAAGAGATAAAG 58.565 47.826 0.00 0.00 0.00 1.85
3140 4149 3.866327 GGACACGGAAGAAGAGATAAAGC 59.134 47.826 0.00 0.00 0.00 3.51
3141 4150 4.495422 GACACGGAAGAAGAGATAAAGCA 58.505 43.478 0.00 0.00 0.00 3.91
3142 4151 4.894784 ACACGGAAGAAGAGATAAAGCAA 58.105 39.130 0.00 0.00 0.00 3.91
3143 4152 5.305585 ACACGGAAGAAGAGATAAAGCAAA 58.694 37.500 0.00 0.00 0.00 3.68
3144 4153 5.763204 ACACGGAAGAAGAGATAAAGCAAAA 59.237 36.000 0.00 0.00 0.00 2.44
3145 4154 6.262273 ACACGGAAGAAGAGATAAAGCAAAAA 59.738 34.615 0.00 0.00 0.00 1.94
3146 4155 6.578919 CACGGAAGAAGAGATAAAGCAAAAAC 59.421 38.462 0.00 0.00 0.00 2.43
3147 4156 6.262273 ACGGAAGAAGAGATAAAGCAAAAACA 59.738 34.615 0.00 0.00 0.00 2.83
3148 4157 6.798959 CGGAAGAAGAGATAAAGCAAAAACAG 59.201 38.462 0.00 0.00 0.00 3.16
3149 4158 7.307989 CGGAAGAAGAGATAAAGCAAAAACAGA 60.308 37.037 0.00 0.00 0.00 3.41
3150 4159 8.352942 GGAAGAAGAGATAAAGCAAAAACAGAA 58.647 33.333 0.00 0.00 0.00 3.02
3151 4160 9.905171 GAAGAAGAGATAAAGCAAAAACAGAAT 57.095 29.630 0.00 0.00 0.00 2.40
3156 4165 8.951243 AGAGATAAAGCAAAAACAGAATACTCC 58.049 33.333 0.00 0.00 0.00 3.85
3157 4166 8.635765 AGATAAAGCAAAAACAGAATACTCCA 57.364 30.769 0.00 0.00 0.00 3.86
3158 4167 9.077885 AGATAAAGCAAAAACAGAATACTCCAA 57.922 29.630 0.00 0.00 0.00 3.53
3159 4168 9.691362 GATAAAGCAAAAACAGAATACTCCAAA 57.309 29.630 0.00 0.00 0.00 3.28
3160 4169 7.770801 AAAGCAAAAACAGAATACTCCAAAC 57.229 32.000 0.00 0.00 0.00 2.93
3161 4170 6.463995 AGCAAAAACAGAATACTCCAAACA 57.536 33.333 0.00 0.00 0.00 2.83
3162 4171 7.054491 AGCAAAAACAGAATACTCCAAACAT 57.946 32.000 0.00 0.00 0.00 2.71
3163 4172 8.177119 AGCAAAAACAGAATACTCCAAACATA 57.823 30.769 0.00 0.00 0.00 2.29
3164 4173 8.082242 AGCAAAAACAGAATACTCCAAACATAC 58.918 33.333 0.00 0.00 0.00 2.39
3165 4174 7.865385 GCAAAAACAGAATACTCCAAACATACA 59.135 33.333 0.00 0.00 0.00 2.29
3166 4175 9.743057 CAAAAACAGAATACTCCAAACATACAA 57.257 29.630 0.00 0.00 0.00 2.41
3168 4177 9.744468 AAAACAGAATACTCCAAACATACAAAC 57.256 29.630 0.00 0.00 0.00 2.93
3169 4178 8.458573 AACAGAATACTCCAAACATACAAACA 57.541 30.769 0.00 0.00 0.00 2.83
3170 4179 8.099364 ACAGAATACTCCAAACATACAAACAG 57.901 34.615 0.00 0.00 0.00 3.16
3171 4180 7.174946 ACAGAATACTCCAAACATACAAACAGG 59.825 37.037 0.00 0.00 0.00 4.00
3172 4181 6.659242 AGAATACTCCAAACATACAAACAGGG 59.341 38.462 0.00 0.00 0.00 4.45
3173 4182 3.496331 ACTCCAAACATACAAACAGGGG 58.504 45.455 0.00 0.00 0.00 4.79
3174 4183 3.139397 ACTCCAAACATACAAACAGGGGA 59.861 43.478 0.00 0.00 0.00 4.81
3175 4184 3.758554 CTCCAAACATACAAACAGGGGAG 59.241 47.826 0.00 0.00 34.11 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.595124 TGAAGTCAACAGAGCGACAA 57.405 45.000 0.00 0.00 34.48 3.18
1 2 2.595124 TTGAAGTCAACAGAGCGACA 57.405 45.000 0.00 0.00 34.48 4.35
2 3 2.607635 TGTTTGAAGTCAACAGAGCGAC 59.392 45.455 0.00 0.00 35.28 5.19
3 4 2.607635 GTGTTTGAAGTCAACAGAGCGA 59.392 45.455 0.00 0.00 35.28 4.93
4 5 2.351418 TGTGTTTGAAGTCAACAGAGCG 59.649 45.455 0.00 0.00 35.28 5.03
5 6 4.531332 GATGTGTTTGAAGTCAACAGAGC 58.469 43.478 0.00 0.00 35.28 4.09
6 7 4.576053 TGGATGTGTTTGAAGTCAACAGAG 59.424 41.667 0.00 0.00 35.28 3.35
7 8 4.522114 TGGATGTGTTTGAAGTCAACAGA 58.478 39.130 0.00 0.00 35.28 3.41
8 9 4.790766 GCTGGATGTGTTTGAAGTCAACAG 60.791 45.833 0.00 0.00 35.28 3.16
9 10 3.066621 GCTGGATGTGTTTGAAGTCAACA 59.933 43.478 0.00 0.00 35.28 3.33
10 11 3.550842 GGCTGGATGTGTTTGAAGTCAAC 60.551 47.826 0.00 0.00 35.28 3.18
11 12 2.622942 GGCTGGATGTGTTTGAAGTCAA 59.377 45.455 0.00 0.00 0.00 3.18
12 13 2.229792 GGCTGGATGTGTTTGAAGTCA 58.770 47.619 0.00 0.00 0.00 3.41
13 14 2.229792 TGGCTGGATGTGTTTGAAGTC 58.770 47.619 0.00 0.00 0.00 3.01
14 15 2.362077 GTTGGCTGGATGTGTTTGAAGT 59.638 45.455 0.00 0.00 0.00 3.01
15 16 2.288395 GGTTGGCTGGATGTGTTTGAAG 60.288 50.000 0.00 0.00 0.00 3.02
16 17 1.686052 GGTTGGCTGGATGTGTTTGAA 59.314 47.619 0.00 0.00 0.00 2.69
17 18 1.327303 GGTTGGCTGGATGTGTTTGA 58.673 50.000 0.00 0.00 0.00 2.69
18 19 0.318120 GGGTTGGCTGGATGTGTTTG 59.682 55.000 0.00 0.00 0.00 2.93
19 20 0.831711 GGGGTTGGCTGGATGTGTTT 60.832 55.000 0.00 0.00 0.00 2.83
20 21 1.228862 GGGGTTGGCTGGATGTGTT 60.229 57.895 0.00 0.00 0.00 3.32
21 22 2.142292 GAGGGGTTGGCTGGATGTGT 62.142 60.000 0.00 0.00 0.00 3.72
22 23 1.379044 GAGGGGTTGGCTGGATGTG 60.379 63.158 0.00 0.00 0.00 3.21
23 24 1.542375 AGAGGGGTTGGCTGGATGT 60.542 57.895 0.00 0.00 0.00 3.06
24 25 1.077212 CAGAGGGGTTGGCTGGATG 60.077 63.158 0.00 0.00 0.00 3.51
25 26 1.542375 ACAGAGGGGTTGGCTGGAT 60.542 57.895 0.00 0.00 34.05 3.41
26 27 2.121963 ACAGAGGGGTTGGCTGGA 60.122 61.111 0.00 0.00 34.05 3.86
27 28 2.034687 CACAGAGGGGTTGGCTGG 59.965 66.667 0.00 0.00 34.05 4.85
28 29 2.034687 CCACAGAGGGGTTGGCTG 59.965 66.667 0.00 0.00 35.81 4.85
29 30 1.142688 ATTCCACAGAGGGGTTGGCT 61.143 55.000 0.00 0.00 38.24 4.75
30 31 0.681243 GATTCCACAGAGGGGTTGGC 60.681 60.000 0.00 0.00 38.24 4.52
31 32 0.034089 GGATTCCACAGAGGGGTTGG 60.034 60.000 0.00 0.00 38.24 3.77
32 33 0.995024 AGGATTCCACAGAGGGGTTG 59.005 55.000 5.29 0.00 38.24 3.77
33 34 1.203492 AGAGGATTCCACAGAGGGGTT 60.203 52.381 5.29 0.00 38.24 4.11
34 35 0.419459 AGAGGATTCCACAGAGGGGT 59.581 55.000 5.29 0.00 38.24 4.95
35 36 1.488393 GAAGAGGATTCCACAGAGGGG 59.512 57.143 5.29 0.00 38.24 4.79
36 37 2.191400 TGAAGAGGATTCCACAGAGGG 58.809 52.381 5.29 0.00 38.24 4.30
37 38 3.453717 TGATGAAGAGGATTCCACAGAGG 59.546 47.826 5.29 0.00 39.47 3.69
38 39 4.750021 TGATGAAGAGGATTCCACAGAG 57.250 45.455 5.29 0.00 0.00 3.35
39 40 6.556116 TGATATGATGAAGAGGATTCCACAGA 59.444 38.462 5.29 0.00 0.00 3.41
40 41 6.766429 TGATATGATGAAGAGGATTCCACAG 58.234 40.000 5.29 0.00 0.00 3.66
41 42 6.752285 TGATATGATGAAGAGGATTCCACA 57.248 37.500 5.29 0.32 0.00 4.17
42 43 7.881751 TCATTGATATGATGAAGAGGATTCCAC 59.118 37.037 5.29 0.00 35.87 4.02
43 44 7.981142 TCATTGATATGATGAAGAGGATTCCA 58.019 34.615 5.29 0.00 35.87 3.53
60 61 9.494271 GCAAAGTTGAGGTCTATATCATTGATA 57.506 33.333 8.76 8.76 0.00 2.15
61 62 7.446625 GGCAAAGTTGAGGTCTATATCATTGAT 59.553 37.037 4.28 4.28 0.00 2.57
62 63 6.767902 GGCAAAGTTGAGGTCTATATCATTGA 59.232 38.462 0.00 0.00 0.00 2.57
63 64 6.016777 GGGCAAAGTTGAGGTCTATATCATTG 60.017 42.308 0.00 0.00 0.00 2.82
64 65 6.064717 GGGCAAAGTTGAGGTCTATATCATT 58.935 40.000 0.00 0.00 0.00 2.57
65 66 5.370880 AGGGCAAAGTTGAGGTCTATATCAT 59.629 40.000 0.00 0.00 0.00 2.45
66 67 4.721776 AGGGCAAAGTTGAGGTCTATATCA 59.278 41.667 0.00 0.00 0.00 2.15
67 68 5.059833 CAGGGCAAAGTTGAGGTCTATATC 58.940 45.833 0.00 0.00 0.00 1.63
68 69 4.141390 CCAGGGCAAAGTTGAGGTCTATAT 60.141 45.833 0.00 0.00 0.00 0.86
69 70 3.199946 CCAGGGCAAAGTTGAGGTCTATA 59.800 47.826 0.00 0.00 0.00 1.31
70 71 2.025887 CCAGGGCAAAGTTGAGGTCTAT 60.026 50.000 0.00 0.00 0.00 1.98
71 72 1.351017 CCAGGGCAAAGTTGAGGTCTA 59.649 52.381 0.00 0.00 0.00 2.59
72 73 0.111253 CCAGGGCAAAGTTGAGGTCT 59.889 55.000 0.00 0.00 0.00 3.85
73 74 1.527433 GCCAGGGCAAAGTTGAGGTC 61.527 60.000 5.20 0.00 41.49 3.85
74 75 1.531602 GCCAGGGCAAAGTTGAGGT 60.532 57.895 5.20 0.00 41.49 3.85
75 76 3.369921 GCCAGGGCAAAGTTGAGG 58.630 61.111 5.20 0.00 41.49 3.86
85 86 2.364002 TGAACTTAGTTTTTGCCAGGGC 59.636 45.455 2.62 2.62 42.35 5.19
86 87 3.383185 TGTGAACTTAGTTTTTGCCAGGG 59.617 43.478 0.00 0.00 0.00 4.45
87 88 4.647424 TGTGAACTTAGTTTTTGCCAGG 57.353 40.909 0.00 0.00 0.00 4.45
88 89 4.984161 CCATGTGAACTTAGTTTTTGCCAG 59.016 41.667 0.00 0.00 0.00 4.85
89 90 4.739137 GCCATGTGAACTTAGTTTTTGCCA 60.739 41.667 0.00 0.00 0.00 4.92
90 91 3.740832 GCCATGTGAACTTAGTTTTTGCC 59.259 43.478 0.00 0.00 0.00 4.52
91 92 4.367450 TGCCATGTGAACTTAGTTTTTGC 58.633 39.130 0.00 0.00 0.00 3.68
92 93 6.900568 TTTGCCATGTGAACTTAGTTTTTG 57.099 33.333 0.00 0.00 0.00 2.44
93 94 7.389053 TGTTTTTGCCATGTGAACTTAGTTTTT 59.611 29.630 0.00 0.00 0.00 1.94
94 95 6.876257 TGTTTTTGCCATGTGAACTTAGTTTT 59.124 30.769 0.00 0.00 0.00 2.43
95 96 6.402222 TGTTTTTGCCATGTGAACTTAGTTT 58.598 32.000 0.00 0.00 0.00 2.66
96 97 5.971763 TGTTTTTGCCATGTGAACTTAGTT 58.028 33.333 0.00 0.00 0.00 2.24
97 98 5.590530 TGTTTTTGCCATGTGAACTTAGT 57.409 34.783 0.00 0.00 0.00 2.24
98 99 5.343058 CGATGTTTTTGCCATGTGAACTTAG 59.657 40.000 0.00 0.00 0.00 2.18
99 100 5.009110 TCGATGTTTTTGCCATGTGAACTTA 59.991 36.000 0.00 0.00 0.00 2.24
100 101 4.050553 CGATGTTTTTGCCATGTGAACTT 58.949 39.130 0.00 0.00 0.00 2.66
101 102 3.317711 TCGATGTTTTTGCCATGTGAACT 59.682 39.130 0.00 0.00 0.00 3.01
102 103 3.425193 GTCGATGTTTTTGCCATGTGAAC 59.575 43.478 0.00 0.00 0.00 3.18
103 104 3.551863 GGTCGATGTTTTTGCCATGTGAA 60.552 43.478 0.00 0.00 0.00 3.18
104 105 2.030363 GGTCGATGTTTTTGCCATGTGA 60.030 45.455 0.00 0.00 0.00 3.58
105 106 2.288091 TGGTCGATGTTTTTGCCATGTG 60.288 45.455 0.00 0.00 0.00 3.21
106 107 1.959985 TGGTCGATGTTTTTGCCATGT 59.040 42.857 0.00 0.00 0.00 3.21
261 262 9.974980 GTGGTTTTGATTTTTAGGAATGACTTA 57.025 29.630 0.00 0.00 0.00 2.24
283 284 2.703536 TGAACATGTAGTGGACAGTGGT 59.296 45.455 0.00 0.00 42.79 4.16
286 287 2.703536 TGGTGAACATGTAGTGGACAGT 59.296 45.455 0.00 0.00 42.79 3.55
287 288 3.067106 GTGGTGAACATGTAGTGGACAG 58.933 50.000 0.00 0.00 42.79 3.51
288 289 2.436173 TGTGGTGAACATGTAGTGGACA 59.564 45.455 0.00 0.00 43.97 4.02
289 290 2.806244 GTGTGGTGAACATGTAGTGGAC 59.194 50.000 0.00 0.00 41.97 4.02
290 291 2.703536 AGTGTGGTGAACATGTAGTGGA 59.296 45.455 0.00 0.00 41.97 4.02
291 292 2.807967 CAGTGTGGTGAACATGTAGTGG 59.192 50.000 0.00 0.00 41.97 4.00
292 293 3.466836 ACAGTGTGGTGAACATGTAGTG 58.533 45.455 0.00 0.00 41.97 2.74
293 294 3.494398 GGACAGTGTGGTGAACATGTAGT 60.494 47.826 0.00 0.00 41.97 2.73
294 295 3.067106 GGACAGTGTGGTGAACATGTAG 58.933 50.000 0.00 0.00 41.97 2.74
295 296 2.703536 AGGACAGTGTGGTGAACATGTA 59.296 45.455 0.00 0.00 41.97 2.29
296 297 1.490490 AGGACAGTGTGGTGAACATGT 59.510 47.619 0.00 0.00 41.97 3.21
297 298 2.146342 GAGGACAGTGTGGTGAACATG 58.854 52.381 0.00 0.00 41.97 3.21
298 299 2.050144 AGAGGACAGTGTGGTGAACAT 58.950 47.619 0.00 0.00 41.97 2.71
299 300 1.138859 CAGAGGACAGTGTGGTGAACA 59.861 52.381 0.00 0.00 36.04 3.18
300 301 1.871080 CAGAGGACAGTGTGGTGAAC 58.129 55.000 0.00 0.00 0.00 3.18
301 302 0.106708 GCAGAGGACAGTGTGGTGAA 59.893 55.000 0.00 0.00 0.00 3.18
302 303 1.048160 TGCAGAGGACAGTGTGGTGA 61.048 55.000 0.00 0.00 0.00 4.02
303 304 0.035881 ATGCAGAGGACAGTGTGGTG 59.964 55.000 0.00 0.00 0.00 4.17
304 305 0.767375 AATGCAGAGGACAGTGTGGT 59.233 50.000 0.00 0.00 0.00 4.16
305 306 1.162698 CAATGCAGAGGACAGTGTGG 58.837 55.000 0.00 0.00 0.00 4.17
306 307 1.162698 CCAATGCAGAGGACAGTGTG 58.837 55.000 0.00 0.00 31.44 3.82
307 308 0.037303 CCCAATGCAGAGGACAGTGT 59.963 55.000 8.70 0.00 31.44 3.55
308 309 0.679002 CCCCAATGCAGAGGACAGTG 60.679 60.000 8.70 0.00 33.10 3.66
309 310 0.842030 TCCCCAATGCAGAGGACAGT 60.842 55.000 8.70 0.00 0.00 3.55
310 311 0.549950 ATCCCCAATGCAGAGGACAG 59.450 55.000 8.70 0.00 0.00 3.51
311 312 0.548031 GATCCCCAATGCAGAGGACA 59.452 55.000 8.70 0.00 0.00 4.02
312 313 0.533755 CGATCCCCAATGCAGAGGAC 60.534 60.000 8.70 0.00 0.00 3.85
313 314 0.690744 TCGATCCCCAATGCAGAGGA 60.691 55.000 8.70 4.19 0.00 3.71
314 315 0.250209 CTCGATCCCCAATGCAGAGG 60.250 60.000 0.00 0.00 0.00 3.69
315 316 0.883814 GCTCGATCCCCAATGCAGAG 60.884 60.000 0.00 0.00 0.00 3.35
316 317 1.146930 GCTCGATCCCCAATGCAGA 59.853 57.895 0.00 0.00 0.00 4.26
317 318 1.153107 TGCTCGATCCCCAATGCAG 60.153 57.895 0.00 0.00 0.00 4.41
318 319 1.153107 CTGCTCGATCCCCAATGCA 60.153 57.895 0.00 0.00 0.00 3.96
319 320 0.464373 TTCTGCTCGATCCCCAATGC 60.464 55.000 0.00 0.00 0.00 3.56
320 321 1.672881 GTTTCTGCTCGATCCCCAATG 59.327 52.381 0.00 0.00 0.00 2.82
321 322 1.408822 GGTTTCTGCTCGATCCCCAAT 60.409 52.381 0.00 0.00 0.00 3.16
322 323 0.035439 GGTTTCTGCTCGATCCCCAA 60.035 55.000 0.00 0.00 0.00 4.12
323 324 0.909610 AGGTTTCTGCTCGATCCCCA 60.910 55.000 0.00 0.00 0.00 4.96
324 325 0.179070 GAGGTTTCTGCTCGATCCCC 60.179 60.000 0.00 0.00 0.00 4.81
325 326 0.537188 TGAGGTTTCTGCTCGATCCC 59.463 55.000 0.00 0.00 0.00 3.85
326 327 1.646189 GTGAGGTTTCTGCTCGATCC 58.354 55.000 0.00 0.00 0.00 3.36
327 328 1.066858 TGGTGAGGTTTCTGCTCGATC 60.067 52.381 0.00 0.00 0.00 3.69
328 329 0.976641 TGGTGAGGTTTCTGCTCGAT 59.023 50.000 0.00 0.00 0.00 3.59
329 330 0.318441 CTGGTGAGGTTTCTGCTCGA 59.682 55.000 0.00 0.00 0.00 4.04
330 331 1.294659 GCTGGTGAGGTTTCTGCTCG 61.295 60.000 0.00 0.00 0.00 5.03
331 332 0.036022 AGCTGGTGAGGTTTCTGCTC 59.964 55.000 0.00 0.00 0.00 4.26
332 333 0.475906 AAGCTGGTGAGGTTTCTGCT 59.524 50.000 0.00 0.00 36.48 4.24
333 334 1.322442 AAAGCTGGTGAGGTTTCTGC 58.678 50.000 0.00 0.00 44.82 4.26
334 335 3.709987 CAAAAAGCTGGTGAGGTTTCTG 58.290 45.455 0.00 0.00 46.79 3.02
335 336 2.101415 GCAAAAAGCTGGTGAGGTTTCT 59.899 45.455 0.00 0.00 46.79 2.52
336 337 2.473816 GCAAAAAGCTGGTGAGGTTTC 58.526 47.619 0.00 0.00 46.79 2.78
338 339 0.385390 CGCAAAAAGCTGGTGAGGTT 59.615 50.000 0.00 0.00 41.82 3.50
339 340 0.465460 TCGCAAAAAGCTGGTGAGGT 60.465 50.000 0.00 0.00 42.61 3.85
340 341 0.667993 TTCGCAAAAAGCTGGTGAGG 59.332 50.000 0.00 0.00 42.61 3.86
341 342 1.600413 GGTTCGCAAAAAGCTGGTGAG 60.600 52.381 0.00 0.00 42.61 3.51
342 343 0.383949 GGTTCGCAAAAAGCTGGTGA 59.616 50.000 0.00 0.00 42.61 4.02
343 344 0.102120 TGGTTCGCAAAAAGCTGGTG 59.898 50.000 0.00 0.00 42.61 4.17
344 345 0.385390 CTGGTTCGCAAAAAGCTGGT 59.615 50.000 0.00 0.00 42.61 4.00
345 346 0.385390 ACTGGTTCGCAAAAAGCTGG 59.615 50.000 0.00 0.00 42.61 4.85
346 347 1.065401 TGACTGGTTCGCAAAAAGCTG 59.935 47.619 0.00 0.00 42.61 4.24
347 348 1.334869 CTGACTGGTTCGCAAAAAGCT 59.665 47.619 0.00 0.00 42.61 3.74
348 349 1.333619 TCTGACTGGTTCGCAAAAAGC 59.666 47.619 0.00 0.00 40.87 3.51
349 350 2.614057 ACTCTGACTGGTTCGCAAAAAG 59.386 45.455 0.00 0.00 0.00 2.27
350 351 2.612212 GACTCTGACTGGTTCGCAAAAA 59.388 45.455 0.00 0.00 0.00 1.94
351 352 2.210116 GACTCTGACTGGTTCGCAAAA 58.790 47.619 0.00 0.00 0.00 2.44
352 353 1.540363 GGACTCTGACTGGTTCGCAAA 60.540 52.381 0.00 0.00 0.00 3.68
353 354 0.033504 GGACTCTGACTGGTTCGCAA 59.966 55.000 0.00 0.00 0.00 4.85
354 355 0.827925 AGGACTCTGACTGGTTCGCA 60.828 55.000 0.00 0.00 0.00 5.10
355 356 1.133407 CTAGGACTCTGACTGGTTCGC 59.867 57.143 0.00 0.00 0.00 4.70
356 357 2.712709 TCTAGGACTCTGACTGGTTCG 58.287 52.381 0.00 0.00 0.00 3.95
357 358 3.634910 GGATCTAGGACTCTGACTGGTTC 59.365 52.174 0.00 0.00 0.00 3.62
358 359 3.628769 GGGATCTAGGACTCTGACTGGTT 60.629 52.174 0.00 0.00 0.00 3.67
359 360 2.091555 GGGATCTAGGACTCTGACTGGT 60.092 54.545 0.00 0.00 0.00 4.00
360 361 2.593026 GGGATCTAGGACTCTGACTGG 58.407 57.143 0.00 0.00 0.00 4.00
361 362 2.176798 AGGGGATCTAGGACTCTGACTG 59.823 54.545 0.00 0.00 0.00 3.51
362 363 2.176798 CAGGGGATCTAGGACTCTGACT 59.823 54.545 3.85 0.00 0.00 3.41
363 364 2.091555 ACAGGGGATCTAGGACTCTGAC 60.092 54.545 13.64 0.00 0.00 3.51
364 365 2.218673 ACAGGGGATCTAGGACTCTGA 58.781 52.381 13.64 0.00 0.00 3.27
365 366 2.765689 ACAGGGGATCTAGGACTCTG 57.234 55.000 7.34 7.34 0.00 3.35
366 367 2.587777 TGAACAGGGGATCTAGGACTCT 59.412 50.000 0.00 0.00 0.00 3.24
367 368 2.696187 GTGAACAGGGGATCTAGGACTC 59.304 54.545 0.00 0.00 0.00 3.36
368 369 2.627217 GGTGAACAGGGGATCTAGGACT 60.627 54.545 0.00 0.00 0.00 3.85
369 370 1.763545 GGTGAACAGGGGATCTAGGAC 59.236 57.143 0.00 0.00 0.00 3.85
370 371 1.344087 GGGTGAACAGGGGATCTAGGA 60.344 57.143 0.00 0.00 0.00 2.94
371 372 1.132500 GGGTGAACAGGGGATCTAGG 58.868 60.000 0.00 0.00 0.00 3.02
372 373 1.132500 GGGGTGAACAGGGGATCTAG 58.868 60.000 0.00 0.00 0.00 2.43
373 374 0.327191 GGGGGTGAACAGGGGATCTA 60.327 60.000 0.00 0.00 0.00 1.98
374 375 1.619669 GGGGGTGAACAGGGGATCT 60.620 63.158 0.00 0.00 0.00 2.75
375 376 3.007542 GGGGGTGAACAGGGGATC 58.992 66.667 0.00 0.00 0.00 3.36
376 377 3.015145 CGGGGGTGAACAGGGGAT 61.015 66.667 0.00 0.00 0.00 3.85
394 395 2.354188 TCTGTGTTGCGGTCGTCG 60.354 61.111 0.00 0.00 42.76 5.12
395 396 0.944311 ATGTCTGTGTTGCGGTCGTC 60.944 55.000 0.00 0.00 0.00 4.20
396 397 1.069090 ATGTCTGTGTTGCGGTCGT 59.931 52.632 0.00 0.00 0.00 4.34
397 398 1.492873 CATGTCTGTGTTGCGGTCG 59.507 57.895 0.00 0.00 0.00 4.79
398 399 0.602638 TCCATGTCTGTGTTGCGGTC 60.603 55.000 0.00 0.00 0.00 4.79
399 400 0.603707 CTCCATGTCTGTGTTGCGGT 60.604 55.000 0.00 0.00 0.00 5.68
400 401 0.603707 ACTCCATGTCTGTGTTGCGG 60.604 55.000 0.00 0.00 0.00 5.69
401 402 0.514255 CACTCCATGTCTGTGTTGCG 59.486 55.000 0.00 0.00 0.00 4.85
402 403 0.877071 CCACTCCATGTCTGTGTTGC 59.123 55.000 8.47 0.00 0.00 4.17
403 404 1.527034 CCCACTCCATGTCTGTGTTG 58.473 55.000 8.47 0.00 0.00 3.33
404 405 0.250901 GCCCACTCCATGTCTGTGTT 60.251 55.000 8.47 0.00 0.00 3.32
405 406 1.130054 AGCCCACTCCATGTCTGTGT 61.130 55.000 8.47 0.00 0.00 3.72
406 407 0.675837 CAGCCCACTCCATGTCTGTG 60.676 60.000 0.00 0.00 0.00 3.66
407 408 1.681666 CAGCCCACTCCATGTCTGT 59.318 57.895 0.00 0.00 0.00 3.41
408 409 1.748122 GCAGCCCACTCCATGTCTG 60.748 63.158 0.00 0.00 32.84 3.51
409 410 2.673523 GCAGCCCACTCCATGTCT 59.326 61.111 0.00 0.00 0.00 3.41
410 411 2.439156 GGCAGCCCACTCCATGTC 60.439 66.667 0.00 0.00 0.00 3.06
411 412 3.259314 TGGCAGCCCACTCCATGT 61.259 61.111 9.64 0.00 35.79 3.21
420 421 4.785453 CTTCTCCGGTGGCAGCCC 62.785 72.222 9.64 0.00 0.00 5.19
421 422 3.672295 CTCTTCTCCGGTGGCAGCC 62.672 68.421 11.63 3.66 0.00 4.85
422 423 2.125350 CTCTTCTCCGGTGGCAGC 60.125 66.667 6.62 6.62 0.00 5.25
423 424 2.581354 CCTCTTCTCCGGTGGCAG 59.419 66.667 0.00 0.00 0.00 4.85
424 425 3.706373 GCCTCTTCTCCGGTGGCA 61.706 66.667 0.00 0.00 41.35 4.92
425 426 3.672295 CTGCCTCTTCTCCGGTGGC 62.672 68.421 0.00 7.79 41.85 5.01
426 427 0.970937 TACTGCCTCTTCTCCGGTGG 60.971 60.000 0.00 0.00 0.00 4.61
427 428 1.067821 GATACTGCCTCTTCTCCGGTG 59.932 57.143 0.00 0.00 0.00 4.94
428 429 1.342076 TGATACTGCCTCTTCTCCGGT 60.342 52.381 0.00 0.00 0.00 5.28
429 430 1.067821 GTGATACTGCCTCTTCTCCGG 59.932 57.143 0.00 0.00 0.00 5.14
430 431 2.028130 AGTGATACTGCCTCTTCTCCG 58.972 52.381 0.00 0.00 0.00 4.63
431 432 3.451141 CAGTGATACTGCCTCTTCTCC 57.549 52.381 0.00 0.00 39.62 3.71
443 444 1.594862 GCGCCAATGAGACAGTGATAC 59.405 52.381 0.00 0.00 30.53 2.24
466 467 2.305607 TTGGTGGATCCCTTCCCCG 61.306 63.158 9.90 0.00 44.77 5.73
491 492 0.993746 GTTTTGAGACGCAGCGCAAG 60.994 55.000 16.61 2.01 43.44 4.01
529 530 2.281484 GCTTCCACCGCAACCTCA 60.281 61.111 0.00 0.00 0.00 3.86
553 554 4.785453 CCCAGCTCGTCCCCAAGC 62.785 72.222 0.00 0.00 38.84 4.01
565 566 1.749258 CTCCCGTTTAAGGCCCAGC 60.749 63.158 0.00 0.00 0.00 4.85
587 588 1.450312 CCTCCACATTCCCTCACGC 60.450 63.158 0.00 0.00 0.00 5.34
590 591 1.899437 GCGACCTCCACATTCCCTCA 61.899 60.000 0.00 0.00 0.00 3.86
594 595 0.394352 ATTGGCGACCTCCACATTCC 60.394 55.000 0.00 0.00 35.50 3.01
647 648 3.716006 CAAGTCCTGCCGCACACG 61.716 66.667 0.00 0.00 39.67 4.49
656 657 3.429547 CCCGAACTGATCTACAAGTCCTG 60.430 52.174 0.00 0.00 0.00 3.86
665 666 2.434336 CCACCATTCCCGAACTGATCTA 59.566 50.000 0.00 0.00 0.00 1.98
707 714 1.762222 CGTCCATCGTCGGAAATGCC 61.762 60.000 0.00 0.00 36.62 4.40
752 759 1.202592 TCTCATCTCTCCTCTCGACCG 60.203 57.143 0.00 0.00 0.00 4.79
868 875 1.318576 CACTTATCAATTCGGCCCCC 58.681 55.000 0.00 0.00 0.00 5.40
884 891 5.351948 AAAGTTTACCAAAATGTGCCACT 57.648 34.783 0.00 0.00 0.00 4.00
1278 1299 0.331954 AGCCGTAGACCTTGAGGAGA 59.668 55.000 3.59 0.00 38.94 3.71
1775 1796 0.526954 CATTTTCCGCAGCCATGAGC 60.527 55.000 0.00 0.00 44.25 4.26
1969 1990 0.034670 AGGATGCACTTCTCCAAGCC 60.035 55.000 6.83 0.00 33.75 4.35
2079 2103 5.670792 ACACATACCTGGTCTCGAAATAA 57.329 39.130 0.63 0.00 0.00 1.40
2080 2104 5.186215 TCAACACATACCTGGTCTCGAAATA 59.814 40.000 0.63 0.00 0.00 1.40
2383 2418 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2384 2419 2.238898 AGTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2385 2420 2.026636 CAGTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2394 2429 6.805713 ACAAAGTTGAGACAGTTATTTTGGG 58.194 36.000 0.00 0.00 0.00 4.12
2395 2430 7.860872 GGTACAAAGTTGAGACAGTTATTTTGG 59.139 37.037 0.00 0.00 0.00 3.28
2397 2432 8.514330 TGGTACAAAGTTGAGACAGTTATTTT 57.486 30.769 0.00 0.00 31.92 1.82
2429 2517 9.616156 TGTCTCAACCTTAGTACAAATTTGTAA 57.384 29.630 28.05 16.38 44.46 2.41
2431 2519 7.773690 AGTGTCTCAACCTTAGTACAAATTTGT 59.226 33.333 25.99 25.99 44.86 2.83
2440 2528 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
2442 2530 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
2443 2531 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
2444 2532 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
2445 2533 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
2446 2534 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
2447 2535 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2448 2536 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2449 2537 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2450 2538 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2453 2541 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2454 2542 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2455 2543 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2456 2544 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2457 2545 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2463 2551 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2465 2553 0.106116 ACCATCTACTCCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
2466 2554 1.777941 AACCATCTACTCCCTCCGTC 58.222 55.000 0.00 0.00 0.00 4.79
2468 2556 1.831736 ACAAACCATCTACTCCCTCCG 59.168 52.381 0.00 0.00 0.00 4.63
2555 2672 9.638239 GGATAATCAATCTAAAAAGCACAAACA 57.362 29.630 0.00 0.00 34.75 2.83
2596 2713 3.974401 CGTTCCATTGTGATGTTTGTCAC 59.026 43.478 0.30 0.30 46.75 3.67
2633 2750 7.366513 AGTAGTGGAAAGAGTAAGACGTAAAC 58.633 38.462 0.00 0.00 0.00 2.01
2667 2784 6.672266 AAGAACCAGAGACTTCATAGTTCA 57.328 37.500 0.00 0.00 34.21 3.18
2668 2785 7.155328 TGAAAGAACCAGAGACTTCATAGTTC 58.845 38.462 0.00 0.00 33.84 3.01
2670 2787 6.672266 TGAAAGAACCAGAGACTTCATAGT 57.328 37.500 0.00 0.00 37.31 2.12
2671 2788 7.969536 TTTGAAAGAACCAGAGACTTCATAG 57.030 36.000 0.00 0.00 0.00 2.23
2703 3704 0.535335 ACTGGATAACACGGCGACAT 59.465 50.000 16.62 0.40 0.00 3.06
2704 3705 0.389296 CACTGGATAACACGGCGACA 60.389 55.000 16.62 0.00 0.00 4.35
2705 3706 0.389426 ACACTGGATAACACGGCGAC 60.389 55.000 16.62 0.00 0.00 5.19
2707 3708 1.133598 TCTACACTGGATAACACGGCG 59.866 52.381 4.80 4.80 0.00 6.46
2708 3709 2.426024 TCTCTACACTGGATAACACGGC 59.574 50.000 0.00 0.00 0.00 5.68
2709 3710 4.158025 AGTTCTCTACACTGGATAACACGG 59.842 45.833 0.00 0.00 0.00 4.94
2716 3717 3.580458 AGTGCAAGTTCTCTACACTGGAT 59.420 43.478 0.00 0.00 38.73 3.41
2722 3723 7.041372 GGAAATAACAAGTGCAAGTTCTCTACA 60.041 37.037 3.99 0.00 0.00 2.74
2741 3742 6.672657 GCACTATATCTAGGGAGGGGAAATAA 59.327 42.308 0.00 0.00 28.96 1.40
2749 3750 5.126869 CACATCAGCACTATATCTAGGGAGG 59.873 48.000 0.00 0.00 28.96 4.30
2760 3761 5.067805 TCTGTTCGATACACATCAGCACTAT 59.932 40.000 0.00 0.00 32.10 2.12
2773 3774 3.299340 ACACACACCTCTGTTCGATAC 57.701 47.619 0.00 0.00 0.00 2.24
2776 3777 1.611977 CCTACACACACCTCTGTTCGA 59.388 52.381 0.00 0.00 0.00 3.71
2778 3779 2.607282 CGACCTACACACACCTCTGTTC 60.607 54.545 0.00 0.00 0.00 3.18
2780 3781 0.959553 CGACCTACACACACCTCTGT 59.040 55.000 0.00 0.00 0.00 3.41
2781 3782 0.243907 CCGACCTACACACACCTCTG 59.756 60.000 0.00 0.00 0.00 3.35
2782 3783 1.533469 GCCGACCTACACACACCTCT 61.533 60.000 0.00 0.00 0.00 3.69
2783 3784 1.080025 GCCGACCTACACACACCTC 60.080 63.158 0.00 0.00 0.00 3.85
2784 3785 2.580601 GGCCGACCTACACACACCT 61.581 63.158 0.00 0.00 0.00 4.00
2785 3786 2.047560 GGCCGACCTACACACACC 60.048 66.667 0.00 0.00 0.00 4.16
2786 3787 0.321298 AATGGCCGACCTACACACAC 60.321 55.000 0.00 0.00 36.63 3.82
2787 3788 0.398696 AAATGGCCGACCTACACACA 59.601 50.000 0.00 0.00 36.63 3.72
2788 3789 0.802494 CAAATGGCCGACCTACACAC 59.198 55.000 0.00 0.00 36.63 3.82
2789 3790 0.958382 GCAAATGGCCGACCTACACA 60.958 55.000 0.00 0.00 36.63 3.72
2790 3791 0.958382 TGCAAATGGCCGACCTACAC 60.958 55.000 0.00 0.00 43.89 2.90
2791 3792 0.250945 TTGCAAATGGCCGACCTACA 60.251 50.000 0.00 0.00 43.89 2.74
2792 3793 0.451783 CTTGCAAATGGCCGACCTAC 59.548 55.000 0.00 0.00 43.89 3.18
2793 3794 0.037590 ACTTGCAAATGGCCGACCTA 59.962 50.000 0.00 0.00 43.89 3.08
2794 3795 0.827507 AACTTGCAAATGGCCGACCT 60.828 50.000 0.00 0.00 43.89 3.85
2795 3796 0.388520 GAACTTGCAAATGGCCGACC 60.389 55.000 0.00 0.00 43.89 4.79
2796 3797 0.313672 TGAACTTGCAAATGGCCGAC 59.686 50.000 0.00 0.00 43.89 4.79
2797 3798 1.000385 CTTGAACTTGCAAATGGCCGA 60.000 47.619 0.00 0.00 43.89 5.54
2798 3799 1.269726 ACTTGAACTTGCAAATGGCCG 60.270 47.619 0.00 0.00 43.89 6.13
2799 3800 2.036346 AGACTTGAACTTGCAAATGGCC 59.964 45.455 0.00 0.00 43.89 5.36
2800 3801 3.054878 CAGACTTGAACTTGCAAATGGC 58.945 45.455 0.00 0.00 45.13 4.40
2801 3802 4.311816 ACAGACTTGAACTTGCAAATGG 57.688 40.909 0.00 0.00 0.00 3.16
2802 3803 7.140705 TCATTACAGACTTGAACTTGCAAATG 58.859 34.615 0.00 0.00 0.00 2.32
2803 3804 7.275888 TCATTACAGACTTGAACTTGCAAAT 57.724 32.000 0.00 0.00 0.00 2.32
2804 3805 6.691754 TCATTACAGACTTGAACTTGCAAA 57.308 33.333 0.00 0.00 0.00 3.68
2805 3806 6.671190 CATCATTACAGACTTGAACTTGCAA 58.329 36.000 0.00 0.00 0.00 4.08
2806 3807 5.335113 GCATCATTACAGACTTGAACTTGCA 60.335 40.000 0.00 0.00 0.00 4.08
2807 3808 5.091431 GCATCATTACAGACTTGAACTTGC 58.909 41.667 0.00 0.00 0.00 4.01
2808 3809 5.106948 ACGCATCATTACAGACTTGAACTTG 60.107 40.000 0.00 0.00 0.00 3.16
2809 3810 4.997395 ACGCATCATTACAGACTTGAACTT 59.003 37.500 0.00 0.00 0.00 2.66
2810 3811 4.569943 ACGCATCATTACAGACTTGAACT 58.430 39.130 0.00 0.00 0.00 3.01
2811 3812 4.928661 ACGCATCATTACAGACTTGAAC 57.071 40.909 0.00 0.00 0.00 3.18
2812 3813 7.428282 TTTTACGCATCATTACAGACTTGAA 57.572 32.000 0.00 0.00 0.00 2.69
2813 3814 7.428282 TTTTTACGCATCATTACAGACTTGA 57.572 32.000 0.00 0.00 0.00 3.02
2834 3835 4.693420 TCCCACCCACATAATCCATTTTT 58.307 39.130 0.00 0.00 0.00 1.94
2835 3836 4.344938 TCCCACCCACATAATCCATTTT 57.655 40.909 0.00 0.00 0.00 1.82
2836 3837 4.078688 TGATCCCACCCACATAATCCATTT 60.079 41.667 0.00 0.00 0.00 2.32
2837 3838 3.466723 TGATCCCACCCACATAATCCATT 59.533 43.478 0.00 0.00 0.00 3.16
2838 3839 3.062889 TGATCCCACCCACATAATCCAT 58.937 45.455 0.00 0.00 0.00 3.41
2839 3840 2.497368 TGATCCCACCCACATAATCCA 58.503 47.619 0.00 0.00 0.00 3.41
2840 3841 3.074390 TCATGATCCCACCCACATAATCC 59.926 47.826 0.00 0.00 0.00 3.01
2841 3842 4.371624 TCATGATCCCACCCACATAATC 57.628 45.455 0.00 0.00 0.00 1.75
2842 3843 4.168675 AGTTCATGATCCCACCCACATAAT 59.831 41.667 0.00 0.00 0.00 1.28
2843 3844 3.527253 AGTTCATGATCCCACCCACATAA 59.473 43.478 0.00 0.00 0.00 1.90
2844 3845 3.122480 AGTTCATGATCCCACCCACATA 58.878 45.455 0.00 0.00 0.00 2.29
2856 3857 4.284178 AGCCCAAATAGCAAGTTCATGAT 58.716 39.130 0.00 0.00 0.00 2.45
2857 3858 3.700538 AGCCCAAATAGCAAGTTCATGA 58.299 40.909 0.00 0.00 0.00 3.07
2858 3859 5.581126 TTAGCCCAAATAGCAAGTTCATG 57.419 39.130 0.00 0.00 0.00 3.07
2876 3877 6.512177 ACGTGAATAGATCGACATTTTAGC 57.488 37.500 0.00 0.00 0.00 3.09
2885 3888 8.996271 ACATATTACTGTACGTGAATAGATCGA 58.004 33.333 0.00 0.00 0.00 3.59
2954 3963 6.443849 TGTCTCTCCAGAATAAACCTTACCAT 59.556 38.462 0.00 0.00 0.00 3.55
2958 3967 5.189145 GGGTGTCTCTCCAGAATAAACCTTA 59.811 44.000 0.00 0.00 0.00 2.69
2964 3973 3.107601 CAGGGGTGTCTCTCCAGAATAA 58.892 50.000 0.00 0.00 39.70 1.40
2971 3980 1.353091 AAGAACAGGGGTGTCTCTCC 58.647 55.000 0.00 0.00 36.82 3.71
2998 4007 3.039011 TCCCCCGGTGAAAATTCAAAAA 58.961 40.909 0.00 0.00 39.21 1.94
2999 4008 2.630580 CTCCCCCGGTGAAAATTCAAAA 59.369 45.455 0.00 0.00 39.21 2.44
3000 4009 2.243810 CTCCCCCGGTGAAAATTCAAA 58.756 47.619 0.00 0.00 39.21 2.69
3001 4010 1.549037 CCTCCCCCGGTGAAAATTCAA 60.549 52.381 0.00 0.00 39.21 2.69
3002 4011 0.039035 CCTCCCCCGGTGAAAATTCA 59.961 55.000 0.00 0.00 34.20 2.57
3003 4012 0.330267 TCCTCCCCCGGTGAAAATTC 59.670 55.000 0.00 0.00 0.00 2.17
3004 4013 0.331616 CTCCTCCCCCGGTGAAAATT 59.668 55.000 0.00 0.00 0.00 1.82
3005 4014 1.571773 CCTCCTCCCCCGGTGAAAAT 61.572 60.000 0.00 0.00 0.00 1.82
3006 4015 2.228480 CCTCCTCCCCCGGTGAAAA 61.228 63.158 0.00 0.00 0.00 2.29
3007 4016 2.609610 CCTCCTCCCCCGGTGAAA 60.610 66.667 0.00 0.00 0.00 2.69
3008 4017 4.733725 CCCTCCTCCCCCGGTGAA 62.734 72.222 0.00 0.00 0.00 3.18
3027 4036 3.721706 CAGGTGGTGGAGGGGCTC 61.722 72.222 0.00 0.00 0.00 4.70
3028 4037 3.810687 TTCAGGTGGTGGAGGGGCT 62.811 63.158 0.00 0.00 0.00 5.19
3029 4038 2.155197 AATTCAGGTGGTGGAGGGGC 62.155 60.000 0.00 0.00 0.00 5.80
3030 4039 1.295020 TAATTCAGGTGGTGGAGGGG 58.705 55.000 0.00 0.00 0.00 4.79
3031 4040 5.163099 TGAATATAATTCAGGTGGTGGAGGG 60.163 44.000 0.00 0.00 0.00 4.30
3032 4041 5.940617 TGAATATAATTCAGGTGGTGGAGG 58.059 41.667 0.00 0.00 0.00 4.30
3033 4042 8.355169 CAAATGAATATAATTCAGGTGGTGGAG 58.645 37.037 8.20 0.00 0.00 3.86
3034 4043 7.201902 GCAAATGAATATAATTCAGGTGGTGGA 60.202 37.037 8.20 0.00 0.00 4.02
3035 4044 6.925165 GCAAATGAATATAATTCAGGTGGTGG 59.075 38.462 8.20 0.00 0.00 4.61
3036 4045 6.925165 GGCAAATGAATATAATTCAGGTGGTG 59.075 38.462 8.20 3.64 0.00 4.17
3037 4046 6.840705 AGGCAAATGAATATAATTCAGGTGGT 59.159 34.615 8.20 0.00 0.00 4.16
3038 4047 7.294017 AGGCAAATGAATATAATTCAGGTGG 57.706 36.000 8.20 0.00 0.00 4.61
3068 4077 2.692817 TGCAAAAAGGCTGCAAAGC 58.307 47.368 0.50 0.00 46.47 3.51
3073 4082 1.435577 CCATCTTGCAAAAAGGCTGC 58.564 50.000 0.00 0.00 40.35 5.25
3074 4083 1.345415 ACCCATCTTGCAAAAAGGCTG 59.655 47.619 0.00 0.00 34.04 4.85
3075 4084 1.720781 ACCCATCTTGCAAAAAGGCT 58.279 45.000 0.00 0.00 34.04 4.58
3076 4085 2.224257 TGAACCCATCTTGCAAAAAGGC 60.224 45.455 0.00 0.00 0.00 4.35
3077 4086 3.749665 TGAACCCATCTTGCAAAAAGG 57.250 42.857 0.00 2.03 0.00 3.11
3078 4087 5.759273 TCATTTGAACCCATCTTGCAAAAAG 59.241 36.000 0.00 0.00 32.91 2.27
3079 4088 5.678583 TCATTTGAACCCATCTTGCAAAAA 58.321 33.333 0.00 0.00 32.91 1.94
3080 4089 5.287674 TCATTTGAACCCATCTTGCAAAA 57.712 34.783 0.00 0.00 32.91 2.44
3081 4090 4.952071 TCATTTGAACCCATCTTGCAAA 57.048 36.364 0.00 0.00 33.59 3.68
3082 4091 4.630111 GTTCATTTGAACCCATCTTGCAA 58.370 39.130 11.54 0.00 46.42 4.08
3083 4092 4.255833 GTTCATTTGAACCCATCTTGCA 57.744 40.909 11.54 0.00 46.42 4.08
3094 4103 5.480073 CCCCTGTAATTCTGGTTCATTTGAA 59.520 40.000 0.00 0.00 33.97 2.69
3095 4104 5.016173 CCCCTGTAATTCTGGTTCATTTGA 58.984 41.667 0.00 0.00 33.97 2.69
3096 4105 4.160252 CCCCCTGTAATTCTGGTTCATTTG 59.840 45.833 0.00 0.00 33.97 2.32
3097 4106 4.045334 TCCCCCTGTAATTCTGGTTCATTT 59.955 41.667 0.00 0.00 33.97 2.32
3098 4107 3.596046 TCCCCCTGTAATTCTGGTTCATT 59.404 43.478 0.00 0.00 33.97 2.57
3099 4108 3.053619 GTCCCCCTGTAATTCTGGTTCAT 60.054 47.826 0.00 0.00 33.97 2.57
3100 4109 2.307686 GTCCCCCTGTAATTCTGGTTCA 59.692 50.000 0.00 0.00 33.97 3.18
3101 4110 2.307686 TGTCCCCCTGTAATTCTGGTTC 59.692 50.000 0.00 0.00 33.97 3.62
3102 4111 2.041216 GTGTCCCCCTGTAATTCTGGTT 59.959 50.000 0.00 0.00 33.97 3.67
3103 4112 1.633945 GTGTCCCCCTGTAATTCTGGT 59.366 52.381 0.00 0.00 33.97 4.00
3104 4113 1.406887 CGTGTCCCCCTGTAATTCTGG 60.407 57.143 0.00 0.00 35.32 3.86
3105 4114 1.406887 CCGTGTCCCCCTGTAATTCTG 60.407 57.143 0.00 0.00 0.00 3.02
3106 4115 0.909623 CCGTGTCCCCCTGTAATTCT 59.090 55.000 0.00 0.00 0.00 2.40
3107 4116 0.906775 TCCGTGTCCCCCTGTAATTC 59.093 55.000 0.00 0.00 0.00 2.17
3108 4117 1.280998 CTTCCGTGTCCCCCTGTAATT 59.719 52.381 0.00 0.00 0.00 1.40
3109 4118 0.909623 CTTCCGTGTCCCCCTGTAAT 59.090 55.000 0.00 0.00 0.00 1.89
3110 4119 0.178926 TCTTCCGTGTCCCCCTGTAA 60.179 55.000 0.00 0.00 0.00 2.41
3111 4120 0.178926 TTCTTCCGTGTCCCCCTGTA 60.179 55.000 0.00 0.00 0.00 2.74
3112 4121 1.460689 TTCTTCCGTGTCCCCCTGT 60.461 57.895 0.00 0.00 0.00 4.00
3113 4122 1.192146 TCTTCTTCCGTGTCCCCCTG 61.192 60.000 0.00 0.00 0.00 4.45
3114 4123 0.905337 CTCTTCTTCCGTGTCCCCCT 60.905 60.000 0.00 0.00 0.00 4.79
3115 4124 0.903454 TCTCTTCTTCCGTGTCCCCC 60.903 60.000 0.00 0.00 0.00 5.40
3116 4125 1.196012 ATCTCTTCTTCCGTGTCCCC 58.804 55.000 0.00 0.00 0.00 4.81
3117 4126 4.434520 CTTTATCTCTTCTTCCGTGTCCC 58.565 47.826 0.00 0.00 0.00 4.46
3118 4127 3.866327 GCTTTATCTCTTCTTCCGTGTCC 59.134 47.826 0.00 0.00 0.00 4.02
3119 4128 4.495422 TGCTTTATCTCTTCTTCCGTGTC 58.505 43.478 0.00 0.00 0.00 3.67
3120 4129 4.537135 TGCTTTATCTCTTCTTCCGTGT 57.463 40.909 0.00 0.00 0.00 4.49
3121 4130 5.862924 TTTGCTTTATCTCTTCTTCCGTG 57.137 39.130 0.00 0.00 0.00 4.94
3122 4131 6.262273 TGTTTTTGCTTTATCTCTTCTTCCGT 59.738 34.615 0.00 0.00 0.00 4.69
3123 4132 6.668323 TGTTTTTGCTTTATCTCTTCTTCCG 58.332 36.000 0.00 0.00 0.00 4.30
3124 4133 7.875971 TCTGTTTTTGCTTTATCTCTTCTTCC 58.124 34.615 0.00 0.00 0.00 3.46
3125 4134 9.905171 ATTCTGTTTTTGCTTTATCTCTTCTTC 57.095 29.630 0.00 0.00 0.00 2.87
3130 4139 8.951243 GGAGTATTCTGTTTTTGCTTTATCTCT 58.049 33.333 0.00 0.00 0.00 3.10
3131 4140 8.730680 TGGAGTATTCTGTTTTTGCTTTATCTC 58.269 33.333 0.00 0.00 0.00 2.75
3132 4141 8.635765 TGGAGTATTCTGTTTTTGCTTTATCT 57.364 30.769 0.00 0.00 0.00 1.98
3133 4142 9.691362 TTTGGAGTATTCTGTTTTTGCTTTATC 57.309 29.630 0.00 0.00 0.00 1.75
3134 4143 9.476202 GTTTGGAGTATTCTGTTTTTGCTTTAT 57.524 29.630 0.00 0.00 0.00 1.40
3135 4144 8.470805 TGTTTGGAGTATTCTGTTTTTGCTTTA 58.529 29.630 0.00 0.00 0.00 1.85
3136 4145 7.327214 TGTTTGGAGTATTCTGTTTTTGCTTT 58.673 30.769 0.00 0.00 0.00 3.51
3137 4146 6.872920 TGTTTGGAGTATTCTGTTTTTGCTT 58.127 32.000 0.00 0.00 0.00 3.91
3138 4147 6.463995 TGTTTGGAGTATTCTGTTTTTGCT 57.536 33.333 0.00 0.00 0.00 3.91
3139 4148 7.865385 TGTATGTTTGGAGTATTCTGTTTTTGC 59.135 33.333 0.00 0.00 0.00 3.68
3140 4149 9.743057 TTGTATGTTTGGAGTATTCTGTTTTTG 57.257 29.630 0.00 0.00 0.00 2.44
3142 4151 9.744468 GTTTGTATGTTTGGAGTATTCTGTTTT 57.256 29.630 0.00 0.00 0.00 2.43
3143 4152 8.908903 TGTTTGTATGTTTGGAGTATTCTGTTT 58.091 29.630 0.00 0.00 0.00 2.83
3144 4153 8.458573 TGTTTGTATGTTTGGAGTATTCTGTT 57.541 30.769 0.00 0.00 0.00 3.16
3145 4154 7.174946 CCTGTTTGTATGTTTGGAGTATTCTGT 59.825 37.037 0.00 0.00 0.00 3.41
3146 4155 7.362056 CCCTGTTTGTATGTTTGGAGTATTCTG 60.362 40.741 0.00 0.00 0.00 3.02
3147 4156 6.659242 CCCTGTTTGTATGTTTGGAGTATTCT 59.341 38.462 0.00 0.00 0.00 2.40
3148 4157 6.127730 CCCCTGTTTGTATGTTTGGAGTATTC 60.128 42.308 0.00 0.00 0.00 1.75
3149 4158 5.714806 CCCCTGTTTGTATGTTTGGAGTATT 59.285 40.000 0.00 0.00 0.00 1.89
3150 4159 5.014755 TCCCCTGTTTGTATGTTTGGAGTAT 59.985 40.000 0.00 0.00 0.00 2.12
3151 4160 4.351407 TCCCCTGTTTGTATGTTTGGAGTA 59.649 41.667 0.00 0.00 0.00 2.59
3152 4161 3.139397 TCCCCTGTTTGTATGTTTGGAGT 59.861 43.478 0.00 0.00 0.00 3.85
3153 4162 3.758554 CTCCCCTGTTTGTATGTTTGGAG 59.241 47.826 0.00 0.00 0.00 3.86
3154 4163 3.761897 CTCCCCTGTTTGTATGTTTGGA 58.238 45.455 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.