Multiple sequence alignment - TraesCS1B01G261800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G261800 chr1B 100.000 3079 0 0 1 3079 460149394 460146316 0.000000e+00 5686.0
1 TraesCS1B01G261800 chr1B 97.869 704 14 1 1 704 544793926 544793224 0.000000e+00 1216.0
2 TraesCS1B01G261800 chr1B 87.805 164 14 3 1945 2107 316666512 316666670 1.460000e-43 187.0
3 TraesCS1B01G261800 chr1D 92.571 2396 113 36 705 3079 342878346 342875995 0.000000e+00 3378.0
4 TraesCS1B01G261800 chr1D 91.667 612 49 2 91 700 30064851 30064240 0.000000e+00 846.0
5 TraesCS1B01G261800 chr1A 91.441 2290 117 40 751 3008 442614938 442612696 0.000000e+00 3070.0
6 TraesCS1B01G261800 chr1A 93.827 81 4 1 2999 3079 442609760 442609681 1.500000e-23 121.0
7 TraesCS1B01G261800 chr2B 97.106 691 20 0 1 691 69358178 69358868 0.000000e+00 1166.0
8 TraesCS1B01G261800 chr2B 98.438 64 1 0 1 64 750448260 750448197 2.510000e-21 113.0
9 TraesCS1B01G261800 chr2B 90.625 64 4 2 56 118 750448083 750448021 1.970000e-12 84.2
10 TraesCS1B01G261800 chr6B 94.617 613 26 6 91 699 230757085 230756476 0.000000e+00 942.0
11 TraesCS1B01G261800 chr6B 98.438 64 1 0 1 64 230757342 230757279 2.510000e-21 113.0
12 TraesCS1B01G261800 chr6B 89.231 65 4 3 56 118 230757166 230757103 9.150000e-11 78.7
13 TraesCS1B01G261800 chr5A 94.318 616 32 3 91 704 647573242 647573856 0.000000e+00 941.0
14 TraesCS1B01G261800 chr5A 92.821 599 41 2 108 704 650157602 650158200 0.000000e+00 867.0
15 TraesCS1B01G261800 chr4A 92.727 605 42 2 108 710 604384876 604384272 0.000000e+00 872.0
16 TraesCS1B01G261800 chr4A 85.542 249 20 9 1951 2186 457450027 457449782 2.370000e-61 246.0
17 TraesCS1B01G261800 chr4A 85.259 251 21 10 1949 2186 457456710 457456957 8.530000e-61 244.0
18 TraesCS1B01G261800 chr4A 84.252 254 22 10 1949 2189 462071135 462070887 6.640000e-57 231.0
19 TraesCS1B01G261800 chr6A 91.640 622 45 3 91 705 162661025 162661646 0.000000e+00 854.0
20 TraesCS1B01G261800 chr3D 91.220 615 52 2 92 704 20295268 20295882 0.000000e+00 835.0
21 TraesCS1B01G261800 chr2A 84.109 258 25 10 1945 2189 168479150 168478896 5.130000e-58 235.0
22 TraesCS1B01G261800 chr5B 96.875 64 2 0 1 64 69037388 69037451 1.170000e-19 108.0
23 TraesCS1B01G261800 chrUn 95.312 64 3 0 1 64 347395984 347396047 5.430000e-18 102.0
24 TraesCS1B01G261800 chrUn 95.312 64 3 0 1 64 379922139 379922076 5.430000e-18 102.0
25 TraesCS1B01G261800 chrUn 95.312 64 3 0 1 64 384283279 384283216 5.430000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G261800 chr1B 460146316 460149394 3078 True 5686.0 5686 100.000000 1 3079 1 chr1B.!!$R1 3078
1 TraesCS1B01G261800 chr1B 544793224 544793926 702 True 1216.0 1216 97.869000 1 704 1 chr1B.!!$R2 703
2 TraesCS1B01G261800 chr1D 342875995 342878346 2351 True 3378.0 3378 92.571000 705 3079 1 chr1D.!!$R2 2374
3 TraesCS1B01G261800 chr1D 30064240 30064851 611 True 846.0 846 91.667000 91 700 1 chr1D.!!$R1 609
4 TraesCS1B01G261800 chr1A 442609681 442614938 5257 True 1595.5 3070 92.634000 751 3079 2 chr1A.!!$R1 2328
5 TraesCS1B01G261800 chr2B 69358178 69358868 690 False 1166.0 1166 97.106000 1 691 1 chr2B.!!$F1 690
6 TraesCS1B01G261800 chr6B 230756476 230757342 866 True 377.9 942 94.095333 1 699 3 chr6B.!!$R1 698
7 TraesCS1B01G261800 chr5A 647573242 647573856 614 False 941.0 941 94.318000 91 704 1 chr5A.!!$F1 613
8 TraesCS1B01G261800 chr5A 650157602 650158200 598 False 867.0 867 92.821000 108 704 1 chr5A.!!$F2 596
9 TraesCS1B01G261800 chr4A 604384272 604384876 604 True 872.0 872 92.727000 108 710 1 chr4A.!!$R3 602
10 TraesCS1B01G261800 chr6A 162661025 162661646 621 False 854.0 854 91.640000 91 705 1 chr6A.!!$F1 614
11 TraesCS1B01G261800 chr3D 20295268 20295882 614 False 835.0 835 91.220000 92 704 1 chr3D.!!$F1 612


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 1010 2.124983 CGACAGGGACAGGCATGG 60.125 66.667 2.31 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2642 2865 0.652592 GTCGACAAGATGCCATTCCG 59.347 55.0 11.55 0.0 0.0 4.3 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
454 629 2.143925 GTGAGAGAACAAGAAACCCGG 58.856 52.381 0.00 0.00 0.00 5.73
755 932 4.498894 TCCGTTCACCATCTCTCTAGTA 57.501 45.455 0.00 0.00 0.00 1.82
766 946 6.030849 CCATCTCTCTAGTAAGACACAAACG 58.969 44.000 0.00 0.00 0.00 3.60
813 993 2.923854 CGAACTCCATCGCATCGC 59.076 61.111 0.00 0.00 35.85 4.58
825 1005 2.202797 CATCGCGACAGGGACAGG 60.203 66.667 12.93 0.00 42.26 4.00
830 1010 2.124983 CGACAGGGACAGGCATGG 60.125 66.667 2.31 0.00 0.00 3.66
957 1137 3.195698 GCAACTCCGGCGTGATCC 61.196 66.667 6.01 0.00 0.00 3.36
1020 1203 2.123640 GAGACCCTCCTCTCCCCG 60.124 72.222 0.00 0.00 31.88 5.73
1126 1315 3.504021 CTCAAGAAGCAGACGCAGA 57.496 52.632 0.00 0.00 42.27 4.26
1446 1641 2.199117 GGTACGTGCCTGATCTCCA 58.801 57.895 16.23 0.00 0.00 3.86
1447 1642 0.535335 GGTACGTGCCTGATCTCCAA 59.465 55.000 16.23 0.00 0.00 3.53
1448 1643 1.641577 GTACGTGCCTGATCTCCAAC 58.358 55.000 0.00 0.00 0.00 3.77
1449 1644 1.067142 GTACGTGCCTGATCTCCAACA 60.067 52.381 0.00 0.00 0.00 3.33
1451 1646 1.364626 CGTGCCTGATCTCCAACAGC 61.365 60.000 0.00 0.00 33.40 4.40
1452 1647 0.321919 GTGCCTGATCTCCAACAGCA 60.322 55.000 0.00 0.00 33.40 4.41
1453 1648 0.035725 TGCCTGATCTCCAACAGCAG 60.036 55.000 0.00 0.00 33.40 4.24
1454 1649 0.747283 GCCTGATCTCCAACAGCAGG 60.747 60.000 0.00 0.00 46.82 4.85
1455 1650 0.747283 CCTGATCTCCAACAGCAGGC 60.747 60.000 0.00 0.00 39.60 4.85
1456 1651 0.035725 CTGATCTCCAACAGCAGGCA 60.036 55.000 0.00 0.00 0.00 4.75
1457 1652 0.622136 TGATCTCCAACAGCAGGCAT 59.378 50.000 0.00 0.00 0.00 4.40
1514 1713 3.507597 TGCTCTCGCATTGTTACGT 57.492 47.368 0.00 0.00 42.25 3.57
1515 1714 1.067693 TGCTCTCGCATTGTTACGTG 58.932 50.000 0.00 0.00 42.25 4.49
1516 1715 1.068474 GCTCTCGCATTGTTACGTGT 58.932 50.000 0.00 0.00 35.78 4.49
1517 1716 1.201812 GCTCTCGCATTGTTACGTGTG 60.202 52.381 0.00 0.00 35.78 3.82
1518 1717 2.058798 CTCTCGCATTGTTACGTGTGT 58.941 47.619 0.00 0.00 0.00 3.72
1519 1718 3.239254 CTCTCGCATTGTTACGTGTGTA 58.761 45.455 0.00 0.00 0.00 2.90
1537 1741 0.249868 TACGTGTGCAGAGCAAAGCT 60.250 50.000 0.00 0.00 41.47 3.74
1546 1750 1.160329 AGAGCAAAGCTGACGCGTTT 61.160 50.000 15.53 0.00 39.88 3.60
1567 1771 2.092882 GTACGCGGACCAAGTGCTC 61.093 63.158 11.40 0.00 0.00 4.26
1594 1798 2.044650 TACCCGACGGTGGAGGAG 60.045 66.667 13.94 0.00 44.40 3.69
1621 1825 1.450312 CAAGGGGATCGTGGTGCTC 60.450 63.158 0.00 0.00 0.00 4.26
1642 1846 2.612115 ACCAGCCAGAAGGAGGGG 60.612 66.667 0.00 0.00 36.31 4.79
1736 1944 2.777692 CTCCCAGGTAATTAGCTTCCCA 59.222 50.000 14.43 0.00 30.45 4.37
1740 1948 4.962362 CCCAGGTAATTAGCTTCCCATTTT 59.038 41.667 14.43 0.00 30.45 1.82
1754 1962 2.107366 CCATTTTCCCTAATGGCCGTT 58.893 47.619 16.02 16.02 45.75 4.44
1764 1975 4.134563 CCTAATGGCCGTTAAATGCTACT 58.865 43.478 18.03 0.00 0.00 2.57
1765 1976 4.024048 CCTAATGGCCGTTAAATGCTACTG 60.024 45.833 18.03 3.72 0.00 2.74
1767 1978 3.613494 TGGCCGTTAAATGCTACTGTA 57.387 42.857 0.00 0.00 0.00 2.74
1768 1979 3.527533 TGGCCGTTAAATGCTACTGTAG 58.472 45.455 10.48 10.48 0.00 2.74
1770 1981 4.160065 TGGCCGTTAAATGCTACTGTAGTA 59.840 41.667 15.71 12.06 0.00 1.82
1771 1982 5.163385 TGGCCGTTAAATGCTACTGTAGTAT 60.163 40.000 15.71 13.81 32.22 2.12
1772 1983 5.176958 GGCCGTTAAATGCTACTGTAGTATG 59.823 44.000 17.33 6.71 31.27 2.39
1773 1984 5.981315 GCCGTTAAATGCTACTGTAGTATGA 59.019 40.000 17.33 7.67 31.27 2.15
1774 1985 6.645415 GCCGTTAAATGCTACTGTAGTATGAT 59.355 38.462 17.33 12.45 31.27 2.45
1775 1986 7.359264 GCCGTTAAATGCTACTGTAGTATGATG 60.359 40.741 17.33 11.94 31.27 3.07
1776 1987 7.652105 CCGTTAAATGCTACTGTAGTATGATGT 59.348 37.037 17.33 7.67 31.27 3.06
2081 2296 4.615949 CCTACATCTCCAAGAAGTGATCG 58.384 47.826 0.00 0.00 28.29 3.69
2091 2306 0.590230 GAAGTGATCGAGTCGAGCGG 60.590 60.000 24.15 0.00 45.61 5.52
2094 2309 4.239203 GATCGAGTCGAGCGGCGT 62.239 66.667 21.36 2.19 39.91 5.68
2121 2342 7.434764 CGTGTACAGTACAGTAATTTTTCGAG 58.565 38.462 14.03 0.00 39.77 4.04
2143 2364 0.251608 CCCCCGGTTTTCTGTTGGAT 60.252 55.000 0.00 0.00 0.00 3.41
2145 2366 1.272212 CCCCGGTTTTCTGTTGGATTG 59.728 52.381 0.00 0.00 0.00 2.67
2146 2367 1.272212 CCCGGTTTTCTGTTGGATTGG 59.728 52.381 0.00 0.00 0.00 3.16
2147 2368 2.235016 CCGGTTTTCTGTTGGATTGGA 58.765 47.619 0.00 0.00 0.00 3.53
2148 2369 2.228822 CCGGTTTTCTGTTGGATTGGAG 59.771 50.000 0.00 0.00 0.00 3.86
2149 2370 2.228822 CGGTTTTCTGTTGGATTGGAGG 59.771 50.000 0.00 0.00 0.00 4.30
2162 2383 5.947663 TGGATTGGAGGTTTAGAAGTGAAA 58.052 37.500 0.00 0.00 0.00 2.69
2263 2484 1.598130 ACACTTCAGTTCCCGCAGC 60.598 57.895 0.00 0.00 0.00 5.25
2329 2552 6.315091 TCTTACGATAGCTCAACTGGATAC 57.685 41.667 0.00 0.00 42.67 2.24
2425 2648 3.638160 TGCAAAATGTGAAGCTCTCCTTT 59.362 39.130 0.00 0.00 32.78 3.11
2452 2675 4.681025 ACTTGCATGCTACAACGAAATTTG 59.319 37.500 20.33 0.00 0.00 2.32
2453 2676 4.495911 TGCATGCTACAACGAAATTTGA 57.504 36.364 20.33 0.00 0.00 2.69
2455 2678 4.679197 TGCATGCTACAACGAAATTTGAAC 59.321 37.500 20.33 0.00 0.00 3.18
2456 2679 4.089923 GCATGCTACAACGAAATTTGAACC 59.910 41.667 11.37 0.00 0.00 3.62
2457 2680 5.460646 CATGCTACAACGAAATTTGAACCT 58.539 37.500 0.00 0.00 0.00 3.50
2458 2681 5.103290 TGCTACAACGAAATTTGAACCTC 57.897 39.130 0.00 0.00 0.00 3.85
2459 2682 4.148891 GCTACAACGAAATTTGAACCTCG 58.851 43.478 0.00 0.00 37.33 4.63
2460 2683 3.619233 ACAACGAAATTTGAACCTCGG 57.381 42.857 0.00 0.00 35.64 4.63
2464 2687 2.292292 ACGAAATTTGAACCTCGGTTGG 59.708 45.455 5.98 0.00 38.60 3.77
2465 2688 2.292292 CGAAATTTGAACCTCGGTTGGT 59.708 45.455 5.98 0.00 43.11 3.67
2466 2689 3.608474 CGAAATTTGAACCTCGGTTGGTC 60.608 47.826 5.98 0.00 39.83 4.02
2468 2691 2.649531 TTTGAACCTCGGTTGGTCAT 57.350 45.000 5.98 0.00 39.83 3.06
2469 2692 2.649531 TTGAACCTCGGTTGGTCATT 57.350 45.000 5.98 0.00 39.83 2.57
2477 2700 3.262420 CTCGGTTGGTCATTAGAACAGG 58.738 50.000 0.00 0.00 43.57 4.00
2495 2718 2.564062 CAGGGCACATCACCAAAAGAAT 59.436 45.455 0.00 0.00 0.00 2.40
2497 2720 4.019174 AGGGCACATCACCAAAAGAATAG 58.981 43.478 0.00 0.00 0.00 1.73
2509 2732 9.753674 TCACCAAAAGAATAGGATTTGAACTAT 57.246 29.630 0.00 0.00 36.41 2.12
2606 2829 8.865090 ACATTGGTTTATTAATTCAGTTGTGGA 58.135 29.630 0.00 0.00 0.00 4.02
2607 2830 9.357652 CATTGGTTTATTAATTCAGTTGTGGAG 57.642 33.333 0.00 0.00 0.00 3.86
2642 2865 6.074463 CGCTCATTAGAACCTCGGTTTTATAC 60.074 42.308 2.39 0.00 38.60 1.47
2874 3097 0.659427 CCGTATCCACAGCATGCTTG 59.341 55.000 19.98 18.52 42.53 4.01
2907 3130 9.586435 ACTTTCAAATCCTGTAAAAGTTTGAAG 57.414 29.630 10.30 8.29 44.57 3.02
3059 6227 4.645535 ACTAGAAGACAGCATGAGCAAAA 58.354 39.130 0.00 0.00 45.49 2.44
3065 6233 0.179171 CAGCATGAGCAAAAGAGCCG 60.179 55.000 0.00 0.00 45.49 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
454 629 0.321298 TCGGAACCAAAGTAGGCTGC 60.321 55.000 0.00 0.00 0.00 5.25
488 665 1.743995 GGCAGTTCACGGCCGTTAT 60.744 57.895 32.11 12.11 46.44 1.89
710 887 9.927668 GGAAATGAAAAGATCCAAAGATAACAA 57.072 29.630 0.00 0.00 30.90 2.83
711 888 8.243426 CGGAAATGAAAAGATCCAAAGATAACA 58.757 33.333 0.00 0.00 30.90 2.41
755 932 3.859411 TTTTTCTGCCGTTTGTGTCTT 57.141 38.095 0.00 0.00 0.00 3.01
813 993 2.124983 CCATGCCTGTCCCTGTCG 60.125 66.667 0.00 0.00 0.00 4.35
1299 1494 1.372128 GTCCACCACGTACGTGTCC 60.372 63.158 37.86 20.96 44.02 4.02
1436 1631 0.747283 GCCTGCTGTTGGAGATCAGG 60.747 60.000 0.00 2.43 45.26 3.86
1437 1632 0.035725 TGCCTGCTGTTGGAGATCAG 60.036 55.000 0.00 0.00 33.10 2.90
1438 1633 0.622136 ATGCCTGCTGTTGGAGATCA 59.378 50.000 0.00 0.00 33.10 2.92
1439 1634 1.022735 CATGCCTGCTGTTGGAGATC 58.977 55.000 0.00 0.00 33.10 2.75
1440 1635 1.035932 GCATGCCTGCTGTTGGAGAT 61.036 55.000 6.36 0.00 45.32 2.75
1451 1646 2.780643 CGACGAACTGCATGCCTG 59.219 61.111 16.68 10.76 0.00 4.85
1452 1647 3.121030 GCGACGAACTGCATGCCT 61.121 61.111 16.68 0.00 0.00 4.75
1453 1648 4.166011 GGCGACGAACTGCATGCC 62.166 66.667 16.68 0.00 35.04 4.40
1478 1674 1.686052 GCATGAGTGAGCTAGCTACCT 59.314 52.381 19.38 16.14 0.00 3.08
1480 1676 2.622942 AGAGCATGAGTGAGCTAGCTAC 59.377 50.000 19.38 15.58 42.04 3.58
1513 1712 0.874175 TGCTCTGCACACGTACACAC 60.874 55.000 0.00 0.00 31.71 3.82
1514 1713 0.179097 TTGCTCTGCACACGTACACA 60.179 50.000 0.00 0.00 38.71 3.72
1515 1714 0.934496 TTTGCTCTGCACACGTACAC 59.066 50.000 0.00 0.00 38.71 2.90
1516 1715 1.217001 CTTTGCTCTGCACACGTACA 58.783 50.000 0.00 0.00 38.71 2.90
1517 1716 0.110644 GCTTTGCTCTGCACACGTAC 60.111 55.000 0.00 0.00 38.71 3.67
1518 1717 0.249868 AGCTTTGCTCTGCACACGTA 60.250 50.000 0.00 0.00 38.71 3.57
1519 1718 1.524621 AGCTTTGCTCTGCACACGT 60.525 52.632 0.00 0.00 38.71 4.49
1546 1750 1.287815 CACTTGGTCCGCGTACTCA 59.712 57.895 4.92 0.00 0.00 3.41
1594 1798 2.037847 ATCCCCTTGTTGCTGCCC 59.962 61.111 0.00 0.00 0.00 5.36
1621 1825 1.079543 CTCCTTCTGGCTGGTGACG 60.080 63.158 0.00 0.00 0.00 4.35
1736 1944 5.683770 GCATTTAACGGCCATTAGGGAAAAT 60.684 40.000 2.24 0.00 40.01 1.82
1740 1948 2.092103 AGCATTTAACGGCCATTAGGGA 60.092 45.455 2.24 0.00 40.01 4.20
1754 1962 9.529325 GTGAACATCATACTACAGTAGCATTTA 57.471 33.333 7.57 0.00 33.52 1.40
1764 1975 4.496840 CGCCGTAGTGAACATCATACTACA 60.497 45.833 12.52 0.00 44.26 2.74
1765 1976 3.973135 CGCCGTAGTGAACATCATACTAC 59.027 47.826 0.00 0.00 41.94 2.73
1767 1978 2.223735 CCGCCGTAGTGAACATCATACT 60.224 50.000 0.00 0.00 0.00 2.12
1768 1979 2.124903 CCGCCGTAGTGAACATCATAC 58.875 52.381 0.00 0.00 0.00 2.39
1770 1981 0.810031 GCCGCCGTAGTGAACATCAT 60.810 55.000 0.00 0.00 0.00 2.45
1771 1982 1.447140 GCCGCCGTAGTGAACATCA 60.447 57.895 0.00 0.00 0.00 3.07
1772 1983 2.514013 CGCCGCCGTAGTGAACATC 61.514 63.158 0.00 0.00 0.00 3.06
1773 1984 2.508439 CGCCGCCGTAGTGAACAT 60.508 61.111 0.00 0.00 0.00 2.71
1774 1985 3.672447 TCGCCGCCGTAGTGAACA 61.672 61.111 0.00 0.00 35.54 3.18
1775 1986 3.177249 GTCGCCGCCGTAGTGAAC 61.177 66.667 0.00 0.00 35.54 3.18
1776 1987 4.764336 CGTCGCCGCCGTAGTGAA 62.764 66.667 0.00 0.00 35.54 3.18
2091 2306 0.662374 ACTGTACTGTACACGCACGC 60.662 55.000 16.26 0.00 34.46 5.34
2094 2309 6.345961 CGAAAAATTACTGTACTGTACACGCA 60.346 38.462 16.26 3.96 34.46 5.24
2138 2359 5.576563 TCACTTCTAAACCTCCAATCCAA 57.423 39.130 0.00 0.00 0.00 3.53
2140 2361 5.768164 TGTTTCACTTCTAAACCTCCAATCC 59.232 40.000 0.00 0.00 36.26 3.01
2143 2364 5.996644 TCTGTTTCACTTCTAAACCTCCAA 58.003 37.500 0.00 0.00 36.26 3.53
2145 2366 5.855045 TCTCTGTTTCACTTCTAAACCTCC 58.145 41.667 0.00 0.00 36.26 4.30
2146 2367 6.750148 TCTCTCTGTTTCACTTCTAAACCTC 58.250 40.000 0.00 0.00 36.26 3.85
2147 2368 6.551601 TCTCTCTCTGTTTCACTTCTAAACCT 59.448 38.462 0.00 0.00 36.26 3.50
2148 2369 6.750148 TCTCTCTCTGTTTCACTTCTAAACC 58.250 40.000 0.00 0.00 36.26 3.27
2149 2370 8.085296 TGATCTCTCTCTGTTTCACTTCTAAAC 58.915 37.037 0.00 0.00 37.35 2.01
2162 2383 3.533547 GCTTGCATTGATCTCTCTCTGT 58.466 45.455 0.00 0.00 0.00 3.41
2263 2484 4.458989 TGGGTGAGAATCTTTTTCCGAATG 59.541 41.667 0.00 0.00 34.92 2.67
2329 2552 8.737168 TCCAAATTAATCTCCAGTAATCACAG 57.263 34.615 0.00 0.00 0.00 3.66
2425 2648 5.425577 TTCGTTGTAGCATGCAAGTTTTA 57.574 34.783 21.98 0.00 42.67 1.52
2452 2675 3.604875 TCTAATGACCAACCGAGGTTC 57.395 47.619 4.25 0.00 43.38 3.62
2453 2676 3.071892 TGTTCTAATGACCAACCGAGGTT 59.928 43.478 0.93 0.93 43.38 3.50
2455 2678 3.262420 CTGTTCTAATGACCAACCGAGG 58.738 50.000 0.00 0.00 0.00 4.63
2456 2679 3.262420 CCTGTTCTAATGACCAACCGAG 58.738 50.000 0.00 0.00 0.00 4.63
2457 2680 2.027561 CCCTGTTCTAATGACCAACCGA 60.028 50.000 0.00 0.00 0.00 4.69
2458 2681 2.356135 CCCTGTTCTAATGACCAACCG 58.644 52.381 0.00 0.00 0.00 4.44
2459 2682 2.092323 GCCCTGTTCTAATGACCAACC 58.908 52.381 0.00 0.00 0.00 3.77
2460 2683 2.488153 GTGCCCTGTTCTAATGACCAAC 59.512 50.000 0.00 0.00 0.00 3.77
2464 2687 3.375299 GTGATGTGCCCTGTTCTAATGAC 59.625 47.826 0.00 0.00 0.00 3.06
2465 2688 3.609853 GTGATGTGCCCTGTTCTAATGA 58.390 45.455 0.00 0.00 0.00 2.57
2466 2689 2.684881 GGTGATGTGCCCTGTTCTAATG 59.315 50.000 0.00 0.00 0.00 1.90
2468 2691 1.702401 TGGTGATGTGCCCTGTTCTAA 59.298 47.619 0.00 0.00 0.00 2.10
2469 2692 1.357137 TGGTGATGTGCCCTGTTCTA 58.643 50.000 0.00 0.00 0.00 2.10
2477 2700 4.016444 TCCTATTCTTTTGGTGATGTGCC 58.984 43.478 0.00 0.00 0.00 5.01
2591 2814 9.403583 GGGTATTTATCTCCACAACTGAATTAA 57.596 33.333 0.00 0.00 0.00 1.40
2606 2829 6.270231 AGGTTCTAATGAGCGGGTATTTATCT 59.730 38.462 0.00 0.00 0.00 1.98
2607 2830 6.465084 AGGTTCTAATGAGCGGGTATTTATC 58.535 40.000 0.00 0.00 0.00 1.75
2642 2865 0.652592 GTCGACAAGATGCCATTCCG 59.347 55.000 11.55 0.00 0.00 4.30
2874 3097 2.171003 CAGGATTTGAAAGTCCCACCC 58.829 52.381 1.27 0.00 35.00 4.61
2951 3174 5.464389 TCATCATCAGAATATCAACGCAGTG 59.536 40.000 0.00 0.00 45.00 3.66
3059 6227 2.674796 ACGCTTTAGATTTCGGCTCT 57.325 45.000 0.00 0.00 0.00 4.09



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.