Multiple sequence alignment - TraesCS1B01G261700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G261700 chr1B 100.000 5493 0 0 1 5493 460142279 460147771 0.000000e+00 10144.0
1 TraesCS1B01G261700 chr1B 87.805 164 14 3 5010 5172 316666670 316666512 2.610000e-43 187.0
2 TraesCS1B01G261700 chr1B 82.028 217 28 4 255 466 637393894 637393684 2.030000e-39 174.0
3 TraesCS1B01G261700 chr1D 91.989 2846 132 50 2669 5493 342874651 342877421 0.000000e+00 3904.0
4 TraesCS1B01G261700 chr1D 85.850 1470 126 41 558 1966 342872511 342873959 0.000000e+00 1487.0
5 TraesCS1B01G261700 chr1D 88.376 628 60 11 2035 2659 342873968 342874585 0.000000e+00 743.0
6 TraesCS1B01G261700 chr1D 93.750 80 5 0 173 252 453461530 453461451 2.690000e-23 121.0
7 TraesCS1B01G261700 chr1D 75.625 160 31 5 1088 1243 35645488 35645333 7.630000e-09 73.1
8 TraesCS1B01G261700 chr1A 88.704 2470 169 52 253 2659 442605861 442608283 0.000000e+00 2915.0
9 TraesCS1B01G261700 chr1A 91.989 1473 59 13 2654 4118 442608339 442609760 0.000000e+00 2012.0
10 TraesCS1B01G261700 chr1A 92.429 1400 70 14 4109 5493 442612696 442614074 0.000000e+00 1965.0
11 TraesCS1B01G261700 chr4A 85.542 249 20 9 4931 5166 457449782 457450027 4.250000e-61 246.0
12 TraesCS1B01G261700 chr4A 85.259 251 21 10 4931 5168 457456957 457456710 1.530000e-60 244.0
13 TraesCS1B01G261700 chr4A 84.252 254 22 10 4928 5168 462070887 462071135 1.190000e-56 231.0
14 TraesCS1B01G261700 chr4A 80.357 224 33 3 248 466 570453471 570453688 5.700000e-35 159.0
15 TraesCS1B01G261700 chr4A 93.243 74 5 0 173 246 699175147 699175220 5.820000e-20 110.0
16 TraesCS1B01G261700 chr4A 86.813 91 12 0 162 252 570453467 570453557 9.730000e-18 102.0
17 TraesCS1B01G261700 chr2A 84.109 258 25 10 4928 5172 168478896 168479150 9.200000e-58 235.0
18 TraesCS1B01G261700 chr2D 81.250 224 31 3 248 466 112538565 112538782 2.630000e-38 171.0
19 TraesCS1B01G261700 chr2D 81.250 224 28 8 248 466 351977033 351977247 9.460000e-38 169.0
20 TraesCS1B01G261700 chr6B 81.106 217 30 3 255 466 33970797 33971007 4.400000e-36 163.0
21 TraesCS1B01G261700 chr6B 80.357 224 33 5 248 466 707617393 707617176 5.700000e-35 159.0
22 TraesCS1B01G261700 chr6B 78.947 152 22 6 1097 1243 46531652 46531506 1.630000e-15 95.3
23 TraesCS1B01G261700 chr5D 80.717 223 32 5 248 465 545151538 545151754 4.400000e-36 163.0
24 TraesCS1B01G261700 chr5D 87.097 93 12 0 162 254 8645939 8646031 7.530000e-19 106.0
25 TraesCS1B01G261700 chr5D 83.929 112 14 4 145 256 174800861 174800754 2.710000e-18 104.0
26 TraesCS1B01G261700 chrUn 80.645 217 31 3 255 466 247225200 247224990 2.050000e-34 158.0
27 TraesCS1B01G261700 chrUn 76.974 152 25 6 1097 1243 95444644 95444498 1.640000e-10 78.7
28 TraesCS1B01G261700 chr3D 80.176 227 31 6 248 466 67649276 67649056 2.050000e-34 158.0
29 TraesCS1B01G261700 chr3D 78.571 154 16 5 2460 2613 202378684 202378548 9.800000e-13 86.1
30 TraesCS1B01G261700 chr3D 82.716 81 14 0 1164 1244 326699645 326699565 7.630000e-09 73.1
31 TraesCS1B01G261700 chr4D 89.412 85 9 0 162 246 442548795 442548879 2.090000e-19 108.0
32 TraesCS1B01G261700 chr7D 89.286 84 8 1 173 256 104363174 104363256 2.710000e-18 104.0
33 TraesCS1B01G261700 chr5B 89.286 84 8 1 173 256 637133826 637133744 2.710000e-18 104.0
34 TraesCS1B01G261700 chr2B 88.235 85 10 0 162 246 673707260 673707344 9.730000e-18 102.0
35 TraesCS1B01G261700 chr5A 87.952 83 10 0 1158 1240 495028725 495028643 1.260000e-16 99.0
36 TraesCS1B01G261700 chr5A 91.071 56 5 0 106 161 619357971 619357916 5.900000e-10 76.8
37 TraesCS1B01G261700 chr6A 78.431 153 23 6 1097 1244 26815953 26815806 2.110000e-14 91.6
38 TraesCS1B01G261700 chr6A 94.000 50 3 0 2037 2086 74981617 74981568 5.900000e-10 76.8
39 TraesCS1B01G261700 chr4B 95.745 47 2 0 2040 2086 169924906 169924860 5.900000e-10 76.8
40 TraesCS1B01G261700 chr3B 94.000 50 3 0 2037 2086 805366689 805366738 5.900000e-10 76.8
41 TraesCS1B01G261700 chr3B 82.716 81 14 0 1164 1244 423810844 423810764 7.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G261700 chr1B 460142279 460147771 5492 False 10144.000000 10144 100.000000 1 5493 1 chr1B.!!$F1 5492
1 TraesCS1B01G261700 chr1D 342872511 342877421 4910 False 2044.666667 3904 88.738333 558 5493 3 chr1D.!!$F1 4935
2 TraesCS1B01G261700 chr1A 442605861 442614074 8213 False 2297.333333 2915 91.040667 253 5493 3 chr1A.!!$F1 5240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.031857 TTGGTGCAGATGTTTTGGCG 59.968 50.000 0.00 0.0 0.00 5.69 F
278 279 0.034337 TTCTGGTGCGTTGGTCCTAC 59.966 55.000 0.00 0.0 0.00 3.18 F
1394 1457 0.093705 GCTCGTCAGTGCGTGATTTC 59.906 55.000 11.39 0.0 37.56 2.17 F
1958 2055 0.107017 ATCATTCCGAGGCCAAGTGG 60.107 55.000 5.01 0.0 38.53 4.00 F
1967 2064 1.228862 GGCCAAGTGGTGATGGGTT 60.229 57.895 0.00 0.0 37.19 4.11 F
2017 2114 1.566703 TGGGTGTTTGGAGGAGAAACA 59.433 47.619 0.00 0.0 40.23 2.83 F
3011 3230 2.101582 GTCTGACGAGCATCTATTGGGT 59.898 50.000 0.00 0.0 0.00 4.51 F
3012 3231 2.362397 TCTGACGAGCATCTATTGGGTC 59.638 50.000 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1832 0.322456 TTGCTTTCCCCACAGATCCG 60.322 55.000 0.00 0.0 0.00 4.18 R
1903 1998 0.965363 AGGTGCAAAGTATTGGCCCG 60.965 55.000 0.00 0.0 37.02 6.13 R
3283 3505 3.809279 GCCCAGTTTCAAATTCCAACAAG 59.191 43.478 0.00 0.0 0.00 3.16 R
3652 3883 3.118811 TGTTGGGTCTTTGCCAAAAAGAG 60.119 43.478 0.89 0.0 36.99 2.85 R
3905 4136 6.837312 TGATATACGGAAAGGTCCAAATGAT 58.163 36.000 0.00 0.0 45.26 2.45 R
4005 4236 4.040461 CCTCTCTTTTAGTCCAACTGTCCA 59.960 45.833 0.00 0.0 0.00 4.02 R
4050 4281 0.179171 CAGCATGAGCAAAAGAGCCG 60.179 55.000 0.00 0.0 45.49 5.52 R
4972 8151 0.251608 CCCCCGGTTTTCTGTTGGAT 60.252 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.746359 GGATCTGCCCGGATCTGG 59.254 66.667 14.26 14.26 41.15 3.86
18 19 2.143419 GGATCTGCCCGGATCTGGT 61.143 63.158 19.51 0.00 41.15 4.00
19 20 1.369321 GATCTGCCCGGATCTGGTC 59.631 63.158 19.51 7.32 39.06 4.02
20 21 1.383109 ATCTGCCCGGATCTGGTCA 60.383 57.895 19.51 12.18 0.00 4.02
21 22 0.765903 ATCTGCCCGGATCTGGTCAT 60.766 55.000 19.51 0.00 0.00 3.06
22 23 0.982852 TCTGCCCGGATCTGGTCATT 60.983 55.000 19.51 0.00 0.00 2.57
23 24 0.816825 CTGCCCGGATCTGGTCATTG 60.817 60.000 19.51 4.67 0.00 2.82
24 25 1.224592 GCCCGGATCTGGTCATTGT 59.775 57.895 19.51 0.00 0.00 2.71
25 26 0.394352 GCCCGGATCTGGTCATTGTT 60.394 55.000 19.51 0.00 0.00 2.83
26 27 1.668419 CCCGGATCTGGTCATTGTTC 58.332 55.000 19.51 0.00 0.00 3.18
27 28 1.065491 CCCGGATCTGGTCATTGTTCA 60.065 52.381 19.51 0.00 0.00 3.18
28 29 2.421952 CCCGGATCTGGTCATTGTTCAT 60.422 50.000 19.51 0.00 0.00 2.57
29 30 2.874701 CCGGATCTGGTCATTGTTCATC 59.125 50.000 12.93 0.00 0.00 2.92
30 31 3.432749 CCGGATCTGGTCATTGTTCATCT 60.433 47.826 12.93 0.00 0.00 2.90
31 32 4.202253 CCGGATCTGGTCATTGTTCATCTA 60.202 45.833 12.93 0.00 0.00 1.98
32 33 4.747108 CGGATCTGGTCATTGTTCATCTAC 59.253 45.833 0.00 0.00 0.00 2.59
33 34 4.747108 GGATCTGGTCATTGTTCATCTACG 59.253 45.833 0.00 0.00 0.00 3.51
34 35 4.801330 TCTGGTCATTGTTCATCTACGT 57.199 40.909 0.00 0.00 0.00 3.57
35 36 5.147330 TCTGGTCATTGTTCATCTACGTT 57.853 39.130 0.00 0.00 0.00 3.99
36 37 5.547465 TCTGGTCATTGTTCATCTACGTTT 58.453 37.500 0.00 0.00 0.00 3.60
37 38 5.408299 TCTGGTCATTGTTCATCTACGTTTG 59.592 40.000 0.00 0.00 0.00 2.93
38 39 5.060506 TGGTCATTGTTCATCTACGTTTGT 58.939 37.500 0.00 0.00 0.00 2.83
39 40 5.049749 TGGTCATTGTTCATCTACGTTTGTG 60.050 40.000 0.00 0.00 0.00 3.33
40 41 5.049680 GGTCATTGTTCATCTACGTTTGTGT 60.050 40.000 0.00 0.00 0.00 3.72
41 42 6.071463 GTCATTGTTCATCTACGTTTGTGTC 58.929 40.000 0.00 0.00 0.00 3.67
42 43 5.989168 TCATTGTTCATCTACGTTTGTGTCT 59.011 36.000 0.00 0.00 0.00 3.41
43 44 5.900339 TTGTTCATCTACGTTTGTGTCTC 57.100 39.130 0.00 0.00 0.00 3.36
44 45 5.196341 TGTTCATCTACGTTTGTGTCTCT 57.804 39.130 0.00 0.00 0.00 3.10
45 46 5.597806 TGTTCATCTACGTTTGTGTCTCTT 58.402 37.500 0.00 0.00 0.00 2.85
46 47 6.046593 TGTTCATCTACGTTTGTGTCTCTTT 58.953 36.000 0.00 0.00 0.00 2.52
47 48 7.204604 TGTTCATCTACGTTTGTGTCTCTTTA 58.795 34.615 0.00 0.00 0.00 1.85
48 49 7.381408 TGTTCATCTACGTTTGTGTCTCTTTAG 59.619 37.037 0.00 0.00 0.00 1.85
49 50 7.210718 TCATCTACGTTTGTGTCTCTTTAGA 57.789 36.000 0.00 0.00 0.00 2.10
50 51 7.827701 TCATCTACGTTTGTGTCTCTTTAGAT 58.172 34.615 0.00 0.00 33.30 1.98
51 52 7.968956 TCATCTACGTTTGTGTCTCTTTAGATC 59.031 37.037 0.00 0.00 33.30 2.75
52 53 6.312487 TCTACGTTTGTGTCTCTTTAGATCG 58.688 40.000 0.00 0.00 33.30 3.69
53 54 5.117355 ACGTTTGTGTCTCTTTAGATCGA 57.883 39.130 0.00 0.00 33.30 3.59
54 55 5.526115 ACGTTTGTGTCTCTTTAGATCGAA 58.474 37.500 0.00 0.00 33.30 3.71
55 56 6.157211 ACGTTTGTGTCTCTTTAGATCGAAT 58.843 36.000 0.00 0.00 33.30 3.34
56 57 6.308282 ACGTTTGTGTCTCTTTAGATCGAATC 59.692 38.462 0.00 0.00 33.30 2.52
57 58 6.237595 CGTTTGTGTCTCTTTAGATCGAATCC 60.238 42.308 0.00 0.00 33.30 3.01
58 59 6.531503 TTGTGTCTCTTTAGATCGAATCCT 57.468 37.500 0.00 0.00 33.30 3.24
59 60 6.531503 TGTGTCTCTTTAGATCGAATCCTT 57.468 37.500 0.00 0.00 33.30 3.36
60 61 6.565234 TGTGTCTCTTTAGATCGAATCCTTC 58.435 40.000 0.00 0.00 33.30 3.46
61 62 5.980715 GTGTCTCTTTAGATCGAATCCTTCC 59.019 44.000 0.00 0.00 33.30 3.46
62 63 5.216648 GTCTCTTTAGATCGAATCCTTCCG 58.783 45.833 0.00 0.00 33.30 4.30
63 64 5.008811 GTCTCTTTAGATCGAATCCTTCCGA 59.991 44.000 0.00 0.00 39.25 4.55
64 65 5.239744 TCTCTTTAGATCGAATCCTTCCGAG 59.760 44.000 0.00 0.00 38.25 4.63
65 66 3.644884 TTAGATCGAATCCTTCCGAGC 57.355 47.619 0.00 0.00 40.95 5.03
66 67 1.698506 AGATCGAATCCTTCCGAGCT 58.301 50.000 0.00 0.00 45.13 4.09
68 69 2.936316 GATCGAATCCTTCCGAGCTAC 58.064 52.381 0.00 0.00 38.08 3.58
69 70 1.758936 TCGAATCCTTCCGAGCTACA 58.241 50.000 0.00 0.00 0.00 2.74
70 71 1.404391 TCGAATCCTTCCGAGCTACAC 59.596 52.381 0.00 0.00 0.00 2.90
71 72 1.405821 CGAATCCTTCCGAGCTACACT 59.594 52.381 0.00 0.00 0.00 3.55
72 73 2.617308 CGAATCCTTCCGAGCTACACTA 59.383 50.000 0.00 0.00 0.00 2.74
73 74 3.548415 CGAATCCTTCCGAGCTACACTAC 60.548 52.174 0.00 0.00 0.00 2.73
74 75 2.803030 TCCTTCCGAGCTACACTACT 57.197 50.000 0.00 0.00 0.00 2.57
75 76 3.920231 TCCTTCCGAGCTACACTACTA 57.080 47.619 0.00 0.00 0.00 1.82
76 77 4.434545 TCCTTCCGAGCTACACTACTAT 57.565 45.455 0.00 0.00 0.00 2.12
77 78 4.789807 TCCTTCCGAGCTACACTACTATT 58.210 43.478 0.00 0.00 0.00 1.73
78 79 4.820716 TCCTTCCGAGCTACACTACTATTC 59.179 45.833 0.00 0.00 0.00 1.75
79 80 4.579340 CCTTCCGAGCTACACTACTATTCA 59.421 45.833 0.00 0.00 0.00 2.57
80 81 5.241949 CCTTCCGAGCTACACTACTATTCAT 59.758 44.000 0.00 0.00 0.00 2.57
81 82 6.239064 CCTTCCGAGCTACACTACTATTCATT 60.239 42.308 0.00 0.00 0.00 2.57
82 83 6.073327 TCCGAGCTACACTACTATTCATTG 57.927 41.667 0.00 0.00 0.00 2.82
83 84 5.009710 TCCGAGCTACACTACTATTCATTGG 59.990 44.000 0.00 0.00 0.00 3.16
84 85 5.221263 CCGAGCTACACTACTATTCATTGGT 60.221 44.000 0.00 0.00 0.00 3.67
85 86 5.687730 CGAGCTACACTACTATTCATTGGTG 59.312 44.000 0.00 0.00 0.00 4.17
86 87 5.360591 AGCTACACTACTATTCATTGGTGC 58.639 41.667 0.00 0.00 0.00 5.01
87 88 5.104941 AGCTACACTACTATTCATTGGTGCA 60.105 40.000 0.00 0.00 0.00 4.57
88 89 5.235186 GCTACACTACTATTCATTGGTGCAG 59.765 44.000 0.00 0.00 0.00 4.41
89 90 5.420725 ACACTACTATTCATTGGTGCAGA 57.579 39.130 0.00 0.00 0.00 4.26
90 91 5.994250 ACACTACTATTCATTGGTGCAGAT 58.006 37.500 0.00 0.00 0.00 2.90
91 92 5.819379 ACACTACTATTCATTGGTGCAGATG 59.181 40.000 0.00 0.00 0.00 2.90
92 93 5.819379 CACTACTATTCATTGGTGCAGATGT 59.181 40.000 0.00 0.00 0.00 3.06
93 94 6.317140 CACTACTATTCATTGGTGCAGATGTT 59.683 38.462 0.00 0.00 0.00 2.71
94 95 6.886459 ACTACTATTCATTGGTGCAGATGTTT 59.114 34.615 0.00 0.00 0.00 2.83
95 96 6.594788 ACTATTCATTGGTGCAGATGTTTT 57.405 33.333 0.00 0.00 0.00 2.43
96 97 6.392354 ACTATTCATTGGTGCAGATGTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
97 98 3.663995 TCATTGGTGCAGATGTTTTGG 57.336 42.857 0.00 0.00 0.00 3.28
98 99 2.070783 CATTGGTGCAGATGTTTTGGC 58.929 47.619 0.00 0.00 0.00 4.52
99 100 0.031857 TTGGTGCAGATGTTTTGGCG 59.968 50.000 0.00 0.00 0.00 5.69
100 101 1.734117 GGTGCAGATGTTTTGGCGC 60.734 57.895 0.00 0.00 36.11 6.53
101 102 2.082366 GTGCAGATGTTTTGGCGCG 61.082 57.895 0.00 0.00 0.00 6.86
102 103 3.174573 GCAGATGTTTTGGCGCGC 61.175 61.111 25.94 25.94 0.00 6.86
103 104 2.562912 CAGATGTTTTGGCGCGCT 59.437 55.556 32.29 9.15 0.00 5.92
104 105 1.512734 CAGATGTTTTGGCGCGCTC 60.513 57.895 32.29 21.22 0.00 5.03
105 106 2.574212 GATGTTTTGGCGCGCTCG 60.574 61.111 32.29 0.00 39.07 5.03
106 107 3.308878 GATGTTTTGGCGCGCTCGT 62.309 57.895 32.29 16.58 38.14 4.18
107 108 3.308878 ATGTTTTGGCGCGCTCGTC 62.309 57.895 32.29 15.04 41.43 4.20
108 109 4.736631 GTTTTGGCGCGCTCGTCC 62.737 66.667 32.29 14.61 40.09 4.79
109 110 4.980805 TTTTGGCGCGCTCGTCCT 62.981 61.111 32.29 0.00 40.09 3.85
110 111 3.576932 TTTTGGCGCGCTCGTCCTA 62.577 57.895 32.29 7.77 40.09 2.94
111 112 2.845752 TTTTGGCGCGCTCGTCCTAT 62.846 55.000 32.29 0.00 40.09 2.57
112 113 4.569023 TGGCGCGCTCGTCCTATG 62.569 66.667 32.29 0.00 40.09 2.23
115 116 4.647615 CGCGCTCGTCCTATGGGG 62.648 72.222 5.56 0.00 0.00 4.96
116 117 3.537874 GCGCTCGTCCTATGGGGT 61.538 66.667 0.00 0.00 36.25 4.95
117 118 2.728817 CGCTCGTCCTATGGGGTC 59.271 66.667 0.00 0.00 36.25 4.46
118 119 1.828660 CGCTCGTCCTATGGGGTCT 60.829 63.158 0.00 0.00 36.25 3.85
119 120 1.392710 CGCTCGTCCTATGGGGTCTT 61.393 60.000 0.00 0.00 36.25 3.01
120 121 0.105039 GCTCGTCCTATGGGGTCTTG 59.895 60.000 0.00 0.00 36.25 3.02
121 122 0.753262 CTCGTCCTATGGGGTCTTGG 59.247 60.000 0.00 0.00 36.25 3.61
122 123 1.146263 CGTCCTATGGGGTCTTGGC 59.854 63.158 0.00 0.00 36.25 4.52
123 124 1.622607 CGTCCTATGGGGTCTTGGCA 61.623 60.000 0.00 0.00 36.25 4.92
124 125 0.107165 GTCCTATGGGGTCTTGGCAC 60.107 60.000 0.00 0.00 36.25 5.01
125 126 1.153168 CCTATGGGGTCTTGGCACG 60.153 63.158 0.00 0.00 0.00 5.34
126 127 1.622607 CCTATGGGGTCTTGGCACGA 61.623 60.000 0.00 0.00 0.00 4.35
127 128 0.462047 CTATGGGGTCTTGGCACGAC 60.462 60.000 15.16 15.16 0.00 4.34
128 129 1.195442 TATGGGGTCTTGGCACGACA 61.195 55.000 23.30 5.91 33.11 4.35
129 130 2.063015 ATGGGGTCTTGGCACGACAA 62.063 55.000 23.30 10.39 33.11 3.18
130 131 2.258726 GGGGTCTTGGCACGACAAC 61.259 63.158 23.30 15.65 33.11 3.32
131 132 1.227853 GGGTCTTGGCACGACAACT 60.228 57.895 23.30 0.00 33.11 3.16
132 133 0.818040 GGGTCTTGGCACGACAACTT 60.818 55.000 23.30 0.00 33.11 2.66
133 134 1.021968 GGTCTTGGCACGACAACTTT 58.978 50.000 23.30 0.00 33.11 2.66
134 135 1.404035 GGTCTTGGCACGACAACTTTT 59.596 47.619 23.30 0.00 33.11 2.27
135 136 2.540973 GGTCTTGGCACGACAACTTTTC 60.541 50.000 23.30 2.96 33.11 2.29
136 137 1.329292 TCTTGGCACGACAACTTTTCG 59.671 47.619 0.00 0.00 42.36 3.46
137 138 1.329292 CTTGGCACGACAACTTTTCGA 59.671 47.619 4.37 0.00 39.83 3.71
138 139 0.653636 TGGCACGACAACTTTTCGAC 59.346 50.000 4.37 0.00 39.83 4.20
139 140 0.935196 GGCACGACAACTTTTCGACT 59.065 50.000 4.37 0.00 39.83 4.18
140 141 1.332904 GGCACGACAACTTTTCGACTG 60.333 52.381 4.37 0.00 39.83 3.51
141 142 1.326548 GCACGACAACTTTTCGACTGT 59.673 47.619 4.37 0.00 39.83 3.55
142 143 2.222953 GCACGACAACTTTTCGACTGTT 60.223 45.455 4.37 0.00 39.83 3.16
143 144 3.726782 GCACGACAACTTTTCGACTGTTT 60.727 43.478 4.37 0.00 39.83 2.83
144 145 4.399978 CACGACAACTTTTCGACTGTTTT 58.600 39.130 4.37 0.00 39.83 2.43
145 146 4.490890 CACGACAACTTTTCGACTGTTTTC 59.509 41.667 4.37 0.00 39.83 2.29
146 147 4.390909 ACGACAACTTTTCGACTGTTTTCT 59.609 37.500 4.37 0.00 39.83 2.52
147 148 5.577945 ACGACAACTTTTCGACTGTTTTCTA 59.422 36.000 4.37 0.00 39.83 2.10
148 149 5.894807 CGACAACTTTTCGACTGTTTTCTAC 59.105 40.000 0.00 0.00 38.85 2.59
149 150 6.454583 CGACAACTTTTCGACTGTTTTCTACA 60.455 38.462 0.00 0.00 38.85 2.74
150 151 7.136289 ACAACTTTTCGACTGTTTTCTACAA 57.864 32.000 0.00 0.00 36.02 2.41
151 152 7.758495 ACAACTTTTCGACTGTTTTCTACAAT 58.242 30.769 0.00 0.00 36.02 2.71
152 153 8.885722 ACAACTTTTCGACTGTTTTCTACAATA 58.114 29.630 0.00 0.00 36.02 1.90
153 154 9.710979 CAACTTTTCGACTGTTTTCTACAATAA 57.289 29.630 0.00 0.00 36.02 1.40
154 155 9.931210 AACTTTTCGACTGTTTTCTACAATAAG 57.069 29.630 0.00 0.00 36.02 1.73
155 156 9.106070 ACTTTTCGACTGTTTTCTACAATAAGT 57.894 29.630 0.00 0.00 36.02 2.24
156 157 9.931210 CTTTTCGACTGTTTTCTACAATAAGTT 57.069 29.630 0.00 0.00 36.02 2.66
159 160 9.710979 TTCGACTGTTTTCTACAATAAGTTTTG 57.289 29.630 0.00 0.00 36.02 2.44
160 161 7.853929 TCGACTGTTTTCTACAATAAGTTTTGC 59.146 33.333 0.00 0.00 36.02 3.68
161 162 7.855904 CGACTGTTTTCTACAATAAGTTTTGCT 59.144 33.333 0.00 0.00 36.02 3.91
162 163 9.170584 GACTGTTTTCTACAATAAGTTTTGCTC 57.829 33.333 0.00 0.00 36.02 4.26
163 164 7.855904 ACTGTTTTCTACAATAAGTTTTGCTCG 59.144 33.333 0.00 0.00 36.02 5.03
164 165 7.136119 TGTTTTCTACAATAAGTTTTGCTCGG 58.864 34.615 0.00 0.00 32.64 4.63
165 166 4.939509 TCTACAATAAGTTTTGCTCGGC 57.060 40.909 0.00 0.00 0.00 5.54
166 167 4.575885 TCTACAATAAGTTTTGCTCGGCT 58.424 39.130 0.00 0.00 0.00 5.52
167 168 3.559238 ACAATAAGTTTTGCTCGGCTG 57.441 42.857 0.00 0.00 0.00 4.85
168 169 2.253603 CAATAAGTTTTGCTCGGCTGC 58.746 47.619 0.00 0.00 0.00 5.25
169 170 1.826385 ATAAGTTTTGCTCGGCTGCT 58.174 45.000 0.00 0.00 0.00 4.24
170 171 0.874390 TAAGTTTTGCTCGGCTGCTG 59.126 50.000 0.95 0.95 0.00 4.41
171 172 2.412037 AAGTTTTGCTCGGCTGCTGC 62.412 55.000 7.10 7.10 38.76 5.25
172 173 2.595463 TTTTGCTCGGCTGCTGCT 60.595 55.556 15.64 0.00 39.59 4.24
173 174 2.911484 TTTTGCTCGGCTGCTGCTG 61.911 57.895 17.69 17.69 46.48 4.41
178 179 4.631247 TCGGCTGCTGCTGCTGTT 62.631 61.111 30.83 0.00 44.83 3.16
179 180 4.099170 CGGCTGCTGCTGCTGTTC 62.099 66.667 26.34 12.36 38.88 3.18
180 181 2.672307 GGCTGCTGCTGCTGTTCT 60.672 61.111 26.79 0.00 39.81 3.01
181 182 2.561885 GCTGCTGCTGCTGTTCTG 59.438 61.111 22.10 5.09 39.81 3.02
182 183 2.979197 GCTGCTGCTGCTGTTCTGG 61.979 63.158 22.10 3.65 39.81 3.86
183 184 1.600076 CTGCTGCTGCTGTTCTGGT 60.600 57.895 17.00 0.00 40.48 4.00
184 185 1.853114 CTGCTGCTGCTGTTCTGGTG 61.853 60.000 17.00 0.00 40.48 4.17
185 186 2.952245 CTGCTGCTGTTCTGGTGC 59.048 61.111 0.00 0.00 0.00 5.01
186 187 2.962827 CTGCTGCTGTTCTGGTGCG 61.963 63.158 0.00 0.00 0.00 5.34
187 188 4.395583 GCTGCTGTTCTGGTGCGC 62.396 66.667 0.00 0.00 0.00 6.09
188 189 2.667536 CTGCTGTTCTGGTGCGCT 60.668 61.111 9.73 0.00 0.00 5.92
189 190 2.962827 CTGCTGTTCTGGTGCGCTG 61.963 63.158 9.73 0.00 0.00 5.18
190 191 3.730761 GCTGTTCTGGTGCGCTGG 61.731 66.667 9.73 0.00 0.00 4.85
191 192 2.281070 CTGTTCTGGTGCGCTGGT 60.281 61.111 9.73 0.00 0.00 4.00
192 193 2.280797 TGTTCTGGTGCGCTGGTC 60.281 61.111 9.73 0.00 0.00 4.02
193 194 3.050275 GTTCTGGTGCGCTGGTCC 61.050 66.667 9.73 6.75 0.00 4.46
194 195 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
195 196 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
196 197 2.125512 CTGGTGCGCTGGTCCTAC 60.126 66.667 9.73 0.00 0.00 3.18
197 198 3.989698 CTGGTGCGCTGGTCCTACG 62.990 68.421 9.73 0.30 0.00 3.51
198 199 4.814294 GGTGCGCTGGTCCTACGG 62.814 72.222 9.73 0.00 0.00 4.02
199 200 4.814294 GTGCGCTGGTCCTACGGG 62.814 72.222 9.73 0.00 0.00 5.28
207 208 2.820261 GTCCTACGGGGCCTTAGC 59.180 66.667 0.84 0.00 38.76 3.09
208 209 2.062177 GTCCTACGGGGCCTTAGCA 61.062 63.158 0.84 0.00 42.56 3.49
209 210 2.062177 TCCTACGGGGCCTTAGCAC 61.062 63.158 0.84 0.00 43.97 4.40
210 211 2.106332 CTACGGGGCCTTAGCACG 59.894 66.667 0.84 0.00 46.55 5.34
211 212 2.362760 TACGGGGCCTTAGCACGA 60.363 61.111 0.84 0.00 46.55 4.35
212 213 2.351336 CTACGGGGCCTTAGCACGAG 62.351 65.000 0.84 0.00 46.55 4.18
213 214 4.530857 CGGGGCCTTAGCACGAGG 62.531 72.222 0.84 0.00 46.55 4.63
214 215 3.081409 GGGGCCTTAGCACGAGGA 61.081 66.667 0.84 0.00 46.55 3.71
215 216 2.444256 GGGGCCTTAGCACGAGGAT 61.444 63.158 0.84 0.00 46.55 3.24
216 217 1.527370 GGGCCTTAGCACGAGGATT 59.473 57.895 0.84 0.00 42.56 3.01
217 218 0.107165 GGGCCTTAGCACGAGGATTT 60.107 55.000 0.84 0.00 42.56 2.17
218 219 1.682087 GGGCCTTAGCACGAGGATTTT 60.682 52.381 0.84 0.00 42.56 1.82
219 220 2.092323 GGCCTTAGCACGAGGATTTTT 58.908 47.619 0.00 0.00 42.56 1.94
220 221 2.159379 GGCCTTAGCACGAGGATTTTTG 60.159 50.000 0.00 0.00 42.56 2.44
221 222 2.159379 GCCTTAGCACGAGGATTTTTGG 60.159 50.000 4.42 0.00 39.53 3.28
222 223 3.343617 CCTTAGCACGAGGATTTTTGGA 58.656 45.455 0.00 0.00 36.33 3.53
223 224 3.127030 CCTTAGCACGAGGATTTTTGGAC 59.873 47.826 0.00 0.00 36.33 4.02
224 225 2.568623 AGCACGAGGATTTTTGGACT 57.431 45.000 0.00 0.00 0.00 3.85
225 226 2.154462 AGCACGAGGATTTTTGGACTG 58.846 47.619 0.00 0.00 0.00 3.51
226 227 1.880027 GCACGAGGATTTTTGGACTGT 59.120 47.619 0.00 0.00 0.00 3.55
227 228 2.095718 GCACGAGGATTTTTGGACTGTC 60.096 50.000 0.00 0.00 0.00 3.51
228 229 3.403038 CACGAGGATTTTTGGACTGTCT 58.597 45.455 7.85 0.00 0.00 3.41
229 230 3.815401 CACGAGGATTTTTGGACTGTCTT 59.185 43.478 7.85 0.00 0.00 3.01
230 231 4.065789 ACGAGGATTTTTGGACTGTCTTC 58.934 43.478 7.85 0.00 0.00 2.87
231 232 4.202367 ACGAGGATTTTTGGACTGTCTTCT 60.202 41.667 7.85 0.00 0.00 2.85
232 233 5.011738 ACGAGGATTTTTGGACTGTCTTCTA 59.988 40.000 7.85 0.00 0.00 2.10
233 234 5.348997 CGAGGATTTTTGGACTGTCTTCTAC 59.651 44.000 7.85 0.00 0.00 2.59
234 235 6.187727 AGGATTTTTGGACTGTCTTCTACA 57.812 37.500 7.85 0.00 36.42 2.74
235 236 6.601332 AGGATTTTTGGACTGTCTTCTACAA 58.399 36.000 7.85 0.22 37.74 2.41
236 237 6.486993 AGGATTTTTGGACTGTCTTCTACAAC 59.513 38.462 7.85 0.00 37.74 3.32
237 238 6.262273 GGATTTTTGGACTGTCTTCTACAACA 59.738 38.462 7.85 0.00 37.74 3.33
238 239 7.201785 GGATTTTTGGACTGTCTTCTACAACAA 60.202 37.037 7.85 3.28 37.74 2.83
239 240 6.677781 TTTTGGACTGTCTTCTACAACAAG 57.322 37.500 7.85 0.00 37.74 3.16
240 241 5.353394 TTGGACTGTCTTCTACAACAAGT 57.647 39.130 7.85 0.00 37.74 3.16
241 242 5.353394 TGGACTGTCTTCTACAACAAGTT 57.647 39.130 7.85 0.00 37.74 2.66
242 243 5.741011 TGGACTGTCTTCTACAACAAGTTT 58.259 37.500 7.85 0.00 37.74 2.66
243 244 6.177610 TGGACTGTCTTCTACAACAAGTTTT 58.822 36.000 7.85 0.00 37.74 2.43
244 245 6.093495 TGGACTGTCTTCTACAACAAGTTTTG 59.907 38.462 7.85 0.00 37.74 2.44
245 246 5.880341 ACTGTCTTCTACAACAAGTTTTGC 58.120 37.500 0.00 0.00 37.74 3.68
246 247 5.648092 ACTGTCTTCTACAACAAGTTTTGCT 59.352 36.000 0.00 0.00 37.74 3.91
247 248 6.119144 TGTCTTCTACAACAAGTTTTGCTC 57.881 37.500 0.00 0.00 34.29 4.26
248 249 5.198274 GTCTTCTACAACAAGTTTTGCTCG 58.802 41.667 0.00 0.00 0.00 5.03
249 250 4.272504 TCTTCTACAACAAGTTTTGCTCGG 59.727 41.667 0.00 0.00 0.00 4.63
250 251 2.289547 TCTACAACAAGTTTTGCTCGGC 59.710 45.455 0.00 0.00 0.00 5.54
251 252 1.102978 ACAACAAGTTTTGCTCGGCT 58.897 45.000 0.00 0.00 0.00 5.52
269 270 2.974698 GCTGCTGTTCTGGTGCGT 60.975 61.111 0.00 0.00 0.00 5.24
275 276 1.507141 CTGTTCTGGTGCGTTGGTCC 61.507 60.000 0.00 0.00 0.00 4.46
278 279 0.034337 TTCTGGTGCGTTGGTCCTAC 59.966 55.000 0.00 0.00 0.00 3.18
280 281 2.433664 GGTGCGTTGGTCCTACGG 60.434 66.667 24.09 8.93 39.31 4.02
282 283 3.697747 TGCGTTGGTCCTACGGGG 61.698 66.667 24.09 0.82 39.31 5.73
297 298 1.302993 GGGGCCTTAGCACGACAAA 60.303 57.895 0.84 0.00 46.55 2.83
305 306 4.671766 GCCTTAGCACGACAAATTTTCGAT 60.672 41.667 21.41 12.94 39.83 3.59
307 308 5.283717 CCTTAGCACGACAAATTTTCGATTG 59.716 40.000 21.41 14.37 39.83 2.67
334 335 9.802039 TCTACCACAAAATCTATAAGTTTTGGT 57.198 29.630 18.79 13.99 45.12 3.67
338 339 6.526674 CACAAAATCTATAAGTTTTGGTCGGC 59.473 38.462 18.79 0.00 45.12 5.54
339 340 6.433093 ACAAAATCTATAAGTTTTGGTCGGCT 59.567 34.615 18.79 3.06 45.12 5.52
341 342 3.267483 TCTATAAGTTTTGGTCGGCTGC 58.733 45.455 0.00 0.00 0.00 5.25
342 343 0.802494 ATAAGTTTTGGTCGGCTGCG 59.198 50.000 0.00 0.00 0.00 5.18
343 344 0.249953 TAAGTTTTGGTCGGCTGCGA 60.250 50.000 0.00 0.00 0.00 5.10
345 346 1.154225 GTTTTGGTCGGCTGCGATG 60.154 57.895 0.00 0.00 0.00 3.84
346 347 1.302112 TTTTGGTCGGCTGCGATGA 60.302 52.632 0.00 0.00 0.00 2.92
347 348 0.676466 TTTTGGTCGGCTGCGATGAT 60.676 50.000 0.00 0.00 0.00 2.45
348 349 1.368345 TTTGGTCGGCTGCGATGATG 61.368 55.000 0.00 0.00 0.00 3.07
349 350 2.969238 GGTCGGCTGCGATGATGG 60.969 66.667 0.00 0.00 0.00 3.51
350 351 2.106938 GTCGGCTGCGATGATGGA 59.893 61.111 0.00 0.00 0.00 3.41
351 352 1.953138 GTCGGCTGCGATGATGGAG 60.953 63.158 0.00 0.00 0.00 3.86
354 355 2.281345 GCTGCGATGATGGAGGGG 60.281 66.667 0.00 0.00 0.00 4.79
355 356 2.429058 CTGCGATGATGGAGGGGG 59.571 66.667 0.00 0.00 0.00 5.40
369 370 2.592861 GGGGGATGATGACAGCGC 60.593 66.667 0.00 0.00 43.01 5.92
370 371 2.969238 GGGGATGATGACAGCGCG 60.969 66.667 0.00 0.00 44.30 6.86
371 372 2.202932 GGGATGATGACAGCGCGT 60.203 61.111 8.43 2.53 35.86 6.01
376 377 4.169102 GATGACAGCGCGTCTTCA 57.831 55.556 26.97 18.58 44.43 3.02
378 379 0.734253 GATGACAGCGCGTCTTCAGT 60.734 55.000 26.97 11.74 44.43 3.41
382 383 1.729484 CAGCGCGTCTTCAGTTCGA 60.729 57.895 8.43 0.00 0.00 3.71
389 390 3.663908 GCGTCTTCAGTTCGATTCAATG 58.336 45.455 0.00 0.00 0.00 2.82
410 411 2.479219 GCTTGTACGCTAGGTGGTCTAC 60.479 54.545 0.00 0.00 0.00 2.59
412 413 0.659957 GTACGCTAGGTGGTCTACGG 59.340 60.000 0.00 0.00 31.54 4.02
417 418 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
418 419 2.748798 GCTAGGTGGTCTACGGATCTGA 60.749 54.545 9.00 0.00 0.00 3.27
456 457 2.627945 TCTGGTGTTCATTGTATCGCC 58.372 47.619 0.00 0.00 0.00 5.54
457 458 1.670811 CTGGTGTTCATTGTATCGCCC 59.329 52.381 0.00 0.00 0.00 6.13
468 469 3.342377 TGTATCGCCCTGATTGAACAA 57.658 42.857 0.00 0.00 38.57 2.83
469 470 3.680490 TGTATCGCCCTGATTGAACAAA 58.320 40.909 0.00 0.00 38.57 2.83
470 471 4.075682 TGTATCGCCCTGATTGAACAAAA 58.924 39.130 0.00 0.00 38.57 2.44
471 472 4.704540 TGTATCGCCCTGATTGAACAAAAT 59.295 37.500 0.00 0.00 38.57 1.82
472 473 5.883115 TGTATCGCCCTGATTGAACAAAATA 59.117 36.000 0.00 0.00 38.57 1.40
473 474 5.913137 ATCGCCCTGATTGAACAAAATAA 57.087 34.783 0.00 0.00 31.57 1.40
477 478 6.644592 TCGCCCTGATTGAACAAAATAAAAAG 59.355 34.615 0.00 0.00 0.00 2.27
478 479 6.602179 GCCCTGATTGAACAAAATAAAAAGC 58.398 36.000 0.00 0.00 0.00 3.51
503 504 8.254178 CAGAACATGCTATCCAAGATAGAATC 57.746 38.462 14.37 0.89 0.00 2.52
519 520 8.343168 AGATAGAATCTGGAATAACGTCTAGG 57.657 38.462 0.00 0.00 38.44 3.02
539 540 4.973168 AGGTCACTTATCTTCACTGCAAA 58.027 39.130 0.00 0.00 0.00 3.68
543 544 6.803807 GGTCACTTATCTTCACTGCAAAATTC 59.196 38.462 0.00 0.00 0.00 2.17
545 546 7.536622 GTCACTTATCTTCACTGCAAAATTCAG 59.463 37.037 0.00 0.00 37.56 3.02
547 548 7.749570 CACTTATCTTCACTGCAAAATTCAGAG 59.250 37.037 0.00 0.00 35.61 3.35
548 549 7.663081 ACTTATCTTCACTGCAAAATTCAGAGA 59.337 33.333 0.00 0.00 35.61 3.10
550 551 6.889301 TCTTCACTGCAAAATTCAGAGAAT 57.111 33.333 6.14 0.00 39.28 2.40
551 552 7.281040 TCTTCACTGCAAAATTCAGAGAATT 57.719 32.000 6.14 0.00 39.28 2.17
552 553 7.719483 TCTTCACTGCAAAATTCAGAGAATTT 58.281 30.769 10.92 10.92 39.28 1.82
553 554 8.199449 TCTTCACTGCAAAATTCAGAGAATTTT 58.801 29.630 19.30 19.30 39.28 1.82
554 555 8.721019 TTCACTGCAAAATTCAGAGAATTTTT 57.279 26.923 21.37 9.63 37.64 1.94
601 608 6.296026 TGAGTAAAACAACTCCTTGCATACT 58.704 36.000 1.82 0.00 44.40 2.12
647 654 1.564348 TGCCCCCTCTCAAGGAATTAC 59.436 52.381 0.00 0.00 46.67 1.89
650 657 3.653352 GCCCCCTCTCAAGGAATTACTAT 59.347 47.826 0.00 0.00 46.67 2.12
652 659 5.309806 GCCCCCTCTCAAGGAATTACTATTA 59.690 44.000 0.00 0.00 46.67 0.98
653 660 6.520913 GCCCCCTCTCAAGGAATTACTATTAG 60.521 46.154 0.00 0.00 46.67 1.73
654 661 6.559157 CCCCCTCTCAAGGAATTACTATTAGT 59.441 42.308 1.30 1.30 46.67 2.24
656 663 9.155785 CCCCTCTCAAGGAATTACTATTAGTTA 57.844 37.037 0.85 0.00 46.67 2.24
674 684 7.859325 TTAGTTACCAGAATAATTCAGCACC 57.141 36.000 0.00 0.00 0.00 5.01
690 700 1.817740 GCACCACAAGGGCTAAACTGA 60.818 52.381 0.00 0.00 42.05 3.41
767 787 0.337082 TAATGGTCTCCCCCTCGTCA 59.663 55.000 0.00 0.00 0.00 4.35
817 841 3.464111 AAACTGCAAAGCTTCAAGCAT 57.536 38.095 13.10 0.00 45.56 3.79
822 846 1.336517 GCAAAGCTTCAAGCATCAGCA 60.337 47.619 13.10 0.00 45.56 4.41
823 847 2.596452 CAAAGCTTCAAGCATCAGCAG 58.404 47.619 13.10 0.00 45.56 4.24
828 852 1.022982 TTCAAGCATCAGCAGCCTCG 61.023 55.000 0.00 0.00 45.49 4.63
832 856 2.960659 CATCAGCAGCCTCGCTCG 60.961 66.667 0.00 0.00 41.38 5.03
833 857 4.887987 ATCAGCAGCCTCGCTCGC 62.888 66.667 0.00 0.00 41.38 5.03
846 871 2.124942 CTCGCTGCCCCTTCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
852 879 0.322906 CTGCCCCTTCTTCCACTTCC 60.323 60.000 0.00 0.00 0.00 3.46
915 953 0.176680 ACAAGATAGTGCAGCGGAGG 59.823 55.000 0.00 0.00 0.00 4.30
918 956 3.164269 ATAGTGCAGCGGAGGGGG 61.164 66.667 0.00 0.00 0.00 5.40
919 957 4.715130 TAGTGCAGCGGAGGGGGT 62.715 66.667 0.00 0.00 0.00 4.95
939 977 1.295423 GCGTAGGGAGCTGGTCAAA 59.705 57.895 9.30 0.00 0.00 2.69
940 978 0.321298 GCGTAGGGAGCTGGTCAAAA 60.321 55.000 9.30 0.00 0.00 2.44
963 1001 1.442567 CAGCCTAGCTCAGCTCCAG 59.557 63.158 0.00 0.00 40.44 3.86
965 1003 2.729479 GCCTAGCTCAGCTCCAGCA 61.729 63.158 0.00 0.00 45.16 4.41
1050 1091 4.821589 GTCCTCTGCTTCGGCGGG 62.822 72.222 7.21 1.20 46.64 6.13
1107 1148 4.084888 GCGGCGTTCAACTTCGGG 62.085 66.667 9.37 0.00 0.00 5.14
1291 1344 0.393944 ACTCGGCTCGTCTCCACATA 60.394 55.000 0.00 0.00 0.00 2.29
1394 1457 0.093705 GCTCGTCAGTGCGTGATTTC 59.906 55.000 11.39 0.00 37.56 2.17
1401 1464 0.880278 AGTGCGTGATTTCTGCGTGT 60.880 50.000 0.00 0.00 0.00 4.49
1408 1471 0.955428 GATTTCTGCGTGTGCCCTCA 60.955 55.000 0.00 0.00 41.78 3.86
1419 1482 0.895100 GTGCCCTCAGGATGTTGCAA 60.895 55.000 0.00 0.00 36.90 4.08
1430 1493 2.353839 GTTGCAACAGCAGCACGG 60.354 61.111 24.52 0.00 42.54 4.94
1470 1535 4.226427 TGATACTACCACCGTCTACAGT 57.774 45.455 0.00 0.00 0.00 3.55
1608 1681 1.831736 CGGTGGTTAGGAGTGGAGATT 59.168 52.381 0.00 0.00 0.00 2.40
1615 1688 1.198713 AGGAGTGGAGATTGACGCAT 58.801 50.000 0.00 0.00 0.00 4.73
1651 1724 4.564821 GGTCCTTGGTAGTTGCATTCACTA 60.565 45.833 0.00 0.00 0.00 2.74
1654 1727 5.647658 TCCTTGGTAGTTGCATTCACTATTG 59.352 40.000 0.28 0.00 0.00 1.90
1656 1729 6.071952 CCTTGGTAGTTGCATTCACTATTGTT 60.072 38.462 0.28 0.00 0.00 2.83
1730 1809 0.318120 GTTTGGCACCCCTGATTGTG 59.682 55.000 0.00 0.00 35.58 3.33
1753 1832 1.359848 ACATTTCGGTGAGATCGTGC 58.640 50.000 0.00 0.00 0.00 5.34
1792 1871 1.239968 GCTCTGCTTCTTGGGTGGTG 61.240 60.000 0.00 0.00 0.00 4.17
1811 1892 5.294799 GTGGTGTTGTTCATACAGTGTACAA 59.705 40.000 4.80 5.17 43.18 2.41
1818 1899 9.169468 GTTGTTCATACAGTGTACAAAGAATTG 57.831 33.333 4.80 0.00 45.64 2.32
1851 1938 2.599757 GGGTGCCTAACTTCCCGGT 61.600 63.158 0.00 0.00 0.00 5.28
1852 1939 1.078637 GGTGCCTAACTTCCCGGTC 60.079 63.158 0.00 0.00 0.00 4.79
1858 1945 2.643551 CCTAACTTCCCGGTCGTAGTA 58.356 52.381 0.00 0.00 0.00 1.82
1860 1947 3.443681 CCTAACTTCCCGGTCGTAGTAAA 59.556 47.826 0.00 0.00 0.00 2.01
1862 1949 2.238521 ACTTCCCGGTCGTAGTAAACA 58.761 47.619 0.00 0.00 0.00 2.83
1863 1950 2.827921 ACTTCCCGGTCGTAGTAAACAT 59.172 45.455 0.00 0.00 0.00 2.71
1864 1951 3.119352 ACTTCCCGGTCGTAGTAAACATC 60.119 47.826 0.00 0.00 0.00 3.06
1865 1952 2.726821 TCCCGGTCGTAGTAAACATCT 58.273 47.619 0.00 0.00 0.00 2.90
1866 1953 3.884895 TCCCGGTCGTAGTAAACATCTA 58.115 45.455 0.00 0.00 0.00 1.98
1868 1955 4.704540 TCCCGGTCGTAGTAAACATCTAAA 59.295 41.667 0.00 0.00 0.00 1.85
1869 1956 5.360714 TCCCGGTCGTAGTAAACATCTAAAT 59.639 40.000 0.00 0.00 0.00 1.40
1903 1998 7.817962 TGCTCTCATTTAACTAGTAGTTTGACC 59.182 37.037 20.28 8.23 39.51 4.02
1925 2020 2.102578 GGCCAATACTTTGCACCTGAT 58.897 47.619 0.00 0.00 0.00 2.90
1937 2034 7.962441 ACTTTGCACCTGATTTTTATAGGTTT 58.038 30.769 0.00 0.00 42.72 3.27
1958 2055 0.107017 ATCATTCCGAGGCCAAGTGG 60.107 55.000 5.01 0.00 38.53 4.00
1967 2064 1.228862 GGCCAAGTGGTGATGGGTT 60.229 57.895 0.00 0.00 37.19 4.11
1979 2076 4.888239 TGGTGATGGGTTTTTACTTTTCGA 59.112 37.500 0.00 0.00 0.00 3.71
1980 2077 5.360144 TGGTGATGGGTTTTTACTTTTCGAA 59.640 36.000 0.00 0.00 0.00 3.71
2017 2114 1.566703 TGGGTGTTTGGAGGAGAAACA 59.433 47.619 0.00 0.00 40.23 2.83
2092 2189 6.486993 AGTTCTCCTTGTAGGAACAACATTTC 59.513 38.462 14.83 0.00 45.28 2.17
2095 2192 4.105697 TCCTTGTAGGAACAACATTTCCCT 59.894 41.667 0.00 0.00 45.65 4.20
2097 2194 4.028993 TGTAGGAACAACATTTCCCTCC 57.971 45.455 0.00 0.00 45.65 4.30
2198 2296 7.424227 ACATTTTTGCAGTATTGGTTTCATG 57.576 32.000 0.00 0.00 0.00 3.07
2406 2505 7.250569 AGAAAAATAATGGCGTGTTCTGTATG 58.749 34.615 0.00 0.00 0.00 2.39
2446 2545 2.906389 ACTTCTCCTTGTAGTGGATGCA 59.094 45.455 0.00 0.00 32.56 3.96
2843 3061 8.175925 TGATTGATTACCATGTTTGTGAAAGA 57.824 30.769 0.00 0.00 0.00 2.52
2848 3066 3.290710 ACCATGTTTGTGAAAGAGCACT 58.709 40.909 0.00 0.00 39.49 4.40
2849 3067 4.460263 ACCATGTTTGTGAAAGAGCACTA 58.540 39.130 0.00 0.00 39.49 2.74
2899 3118 9.770097 AATAGACAATACAACATAGGATGACAG 57.230 33.333 0.00 0.00 0.00 3.51
2936 3155 9.979578 TTTGAAATTATTGTACTGAGTGCAATT 57.020 25.926 28.77 15.18 44.00 2.32
3004 3223 4.991153 TTGAATAGTCTGACGAGCATCT 57.009 40.909 1.52 0.00 0.00 2.90
3005 3224 6.318900 TCTTTGAATAGTCTGACGAGCATCTA 59.681 38.462 1.52 0.00 0.00 1.98
3009 3228 3.724508 AGTCTGACGAGCATCTATTGG 57.275 47.619 1.52 0.00 0.00 3.16
3011 3230 2.101582 GTCTGACGAGCATCTATTGGGT 59.898 50.000 0.00 0.00 0.00 4.51
3012 3231 2.362397 TCTGACGAGCATCTATTGGGTC 59.638 50.000 0.00 0.00 0.00 4.46
3021 3240 5.079643 AGCATCTATTGGGTCACAAAGTTT 58.920 37.500 0.00 0.00 43.46 2.66
3022 3241 5.539955 AGCATCTATTGGGTCACAAAGTTTT 59.460 36.000 0.00 0.00 43.46 2.43
3065 3284 9.905713 TGACAAGTAAATAATGATAAGCTCCTT 57.094 29.630 0.00 0.00 0.00 3.36
3083 3302 5.294552 GCTCCTTGATACAACAGATAACCAC 59.705 44.000 0.00 0.00 0.00 4.16
3091 3310 2.824936 CAACAGATAACCACCCAATGCA 59.175 45.455 0.00 0.00 0.00 3.96
3121 3340 4.843728 TCACCAATTCAGACTATGGAACC 58.156 43.478 0.00 0.00 36.75 3.62
3125 3347 5.222337 ACCAATTCAGACTATGGAACCCTTT 60.222 40.000 0.00 0.00 36.75 3.11
3130 3352 9.547279 AATTCAGACTATGGAACCCTTTTTATT 57.453 29.630 0.00 0.00 0.00 1.40
3158 3380 6.855763 TTTTTACAGGAGATAGGTACCGAA 57.144 37.500 6.18 0.00 0.00 4.30
3244 3466 2.932614 CCTTGCTGGTCAATTCTACTCG 59.067 50.000 0.00 0.00 33.57 4.18
3283 3505 4.153117 GTCATTGCATCCATTCCGACTATC 59.847 45.833 0.00 0.00 0.00 2.08
3327 3549 6.459710 GGGCTCAAGGTTTGTAAATACATAGC 60.460 42.308 5.45 5.45 35.89 2.97
3344 3566 5.126067 ACATAGCGCTTCATGGTTCTAATT 58.874 37.500 18.68 0.00 0.00 1.40
3407 3629 6.389091 TCATTGCACTTTGGTAATCACATTC 58.611 36.000 0.00 0.00 0.00 2.67
3652 3883 3.181496 GGCTGCTTACCTCAAAACATAGC 60.181 47.826 0.00 0.00 0.00 2.97
3878 4109 9.706691 CAAACTAGAGTTAACCACATTCTCTTA 57.293 33.333 0.88 0.00 37.25 2.10
3966 4197 9.092876 GTCTAGGAAGATGTTTCAAGATTACTG 57.907 37.037 0.00 0.00 33.30 2.74
4012 4243 8.585471 ATCATTTTGACTATCATTTGGACAGT 57.415 30.769 0.00 0.00 0.00 3.55
4013 4244 8.408043 TCATTTTGACTATCATTTGGACAGTT 57.592 30.769 0.00 0.00 0.00 3.16
4014 4245 8.298854 TCATTTTGACTATCATTTGGACAGTTG 58.701 33.333 0.00 0.00 0.00 3.16
4015 4246 6.573664 TTTGACTATCATTTGGACAGTTGG 57.426 37.500 0.00 0.00 0.00 3.77
4016 4247 5.497464 TGACTATCATTTGGACAGTTGGA 57.503 39.130 0.00 0.00 0.00 3.53
4017 4248 5.245531 TGACTATCATTTGGACAGTTGGAC 58.754 41.667 0.00 0.00 0.00 4.02
4050 4281 5.179555 AGGAAACAGTGACGCTTTAGATTTC 59.820 40.000 0.00 0.00 0.00 2.17
4058 4289 3.335579 ACGCTTTAGATTTCGGCTCTTT 58.664 40.909 0.00 0.00 0.00 2.52
4164 7340 5.464389 TCATCATCAGAATATCAACGCAGTG 59.536 40.000 0.00 0.00 45.00 3.66
4241 7417 2.171003 CAGGATTTGAAAGTCCCACCC 58.829 52.381 1.27 0.00 35.00 4.61
4473 7649 0.652592 GTCGACAAGATGCCATTCCG 59.347 55.000 11.55 0.00 0.00 4.30
4508 7684 6.465084 AGGTTCTAATGAGCGGGTATTTATC 58.535 40.000 0.00 0.00 0.00 1.75
4509 7685 6.270231 AGGTTCTAATGAGCGGGTATTTATCT 59.730 38.462 0.00 0.00 0.00 1.98
4524 7700 9.403583 GGGTATTTATCTCCACAACTGAATTAA 57.596 33.333 0.00 0.00 0.00 1.40
4638 7814 4.016444 TCCTATTCTTTTGGTGATGTGCC 58.984 43.478 0.00 0.00 0.00 5.01
4646 7822 1.357137 TGGTGATGTGCCCTGTTCTA 58.643 50.000 0.00 0.00 0.00 2.10
4647 7823 1.702401 TGGTGATGTGCCCTGTTCTAA 59.298 47.619 0.00 0.00 0.00 2.10
4650 7826 3.609853 GTGATGTGCCCTGTTCTAATGA 58.390 45.455 0.00 0.00 0.00 2.57
4652 7828 2.489938 TGTGCCCTGTTCTAATGACC 57.510 50.000 0.00 0.00 0.00 4.02
4655 7831 2.488153 GTGCCCTGTTCTAATGACCAAC 59.512 50.000 0.00 0.00 0.00 3.77
4656 7832 2.092323 GCCCTGTTCTAATGACCAACC 58.908 52.381 0.00 0.00 0.00 3.77
4657 7833 2.356135 CCCTGTTCTAATGACCAACCG 58.644 52.381 0.00 0.00 0.00 4.44
4659 7835 3.262420 CCTGTTCTAATGACCAACCGAG 58.738 50.000 0.00 0.00 0.00 4.63
4660 7836 3.262420 CTGTTCTAATGACCAACCGAGG 58.738 50.000 0.00 0.00 0.00 4.63
4661 7837 2.635915 TGTTCTAATGACCAACCGAGGT 59.364 45.455 0.00 0.00 46.82 3.85
4662 7838 3.071892 TGTTCTAATGACCAACCGAGGTT 59.928 43.478 0.93 0.93 43.38 3.50
4663 7839 3.604875 TCTAATGACCAACCGAGGTTC 57.395 47.619 4.25 0.00 43.38 3.62
4690 7866 5.425577 TTCGTTGTAGCATGCAAGTTTTA 57.574 34.783 21.98 0.00 42.67 1.52
4786 7962 8.737168 TCCAAATTAATCTCCAGTAATCACAG 57.263 34.615 0.00 0.00 0.00 3.66
4852 8030 4.458989 TGGGTGAGAATCTTTTTCCGAATG 59.541 41.667 0.00 0.00 34.92 2.67
4953 8131 3.533547 GCTTGCATTGATCTCTCTCTGT 58.466 45.455 0.00 0.00 0.00 3.41
4966 8145 8.085296 TGATCTCTCTCTGTTTCACTTCTAAAC 58.915 37.037 0.00 0.00 37.35 2.01
4967 8146 6.750148 TCTCTCTCTGTTTCACTTCTAAACC 58.250 40.000 0.00 0.00 36.26 3.27
4970 8149 5.855045 TCTCTGTTTCACTTCTAAACCTCC 58.145 41.667 0.00 0.00 36.26 4.30
4972 8151 5.996644 TCTGTTTCACTTCTAAACCTCCAA 58.003 37.500 0.00 0.00 36.26 3.53
4973 8152 6.601332 TCTGTTTCACTTCTAAACCTCCAAT 58.399 36.000 0.00 0.00 36.26 3.16
4974 8153 6.710744 TCTGTTTCACTTCTAAACCTCCAATC 59.289 38.462 0.00 0.00 36.26 2.67
4975 8154 5.768164 TGTTTCACTTCTAAACCTCCAATCC 59.232 40.000 0.00 0.00 36.26 3.01
4976 8155 5.576563 TTCACTTCTAAACCTCCAATCCA 57.423 39.130 0.00 0.00 0.00 3.41
4977 8156 5.576563 TCACTTCTAAACCTCCAATCCAA 57.423 39.130 0.00 0.00 0.00 3.53
5021 8206 6.345961 CGAAAAATTACTGTACTGTACACGCA 60.346 38.462 16.26 3.96 34.46 5.24
5024 8209 0.662374 ACTGTACTGTACACGCACGC 60.662 55.000 16.26 0.00 34.46 5.34
5339 8528 4.764336 CGTCGCCGCCGTAGTGAA 62.764 66.667 0.00 0.00 35.54 3.18
5340 8529 3.177249 GTCGCCGCCGTAGTGAAC 61.177 66.667 0.00 0.00 35.54 3.18
5342 8531 2.508439 CGCCGCCGTAGTGAACAT 60.508 61.111 0.00 0.00 0.00 2.71
5346 8535 1.537348 GCCGCCGTAGTGAACATCATA 60.537 52.381 0.00 0.00 0.00 2.15
5347 8536 2.124903 CCGCCGTAGTGAACATCATAC 58.875 52.381 0.00 0.00 0.00 2.39
5351 8540 4.496840 CGCCGTAGTGAACATCATACTACA 60.497 45.833 12.52 0.00 44.26 2.74
5361 8550 9.529325 GTGAACATCATACTACAGTAGCATTTA 57.471 33.333 7.57 0.00 33.52 1.40
5375 8564 2.092103 AGCATTTAACGGCCATTAGGGA 60.092 45.455 2.24 0.00 40.01 4.20
5379 8568 5.683770 GCATTTAACGGCCATTAGGGAAAAT 60.684 40.000 2.24 0.00 40.01 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.105806 GACCAGATCCGGGCAGATCC 62.106 65.000 0.00 0.00 43.14 3.36
1 2 1.369321 GACCAGATCCGGGCAGATC 59.631 63.158 0.00 8.31 42.57 2.75
2 3 1.383109 TGACCAGATCCGGGCAGAT 60.383 57.895 0.00 0.00 40.00 2.90
3 4 2.038813 TGACCAGATCCGGGCAGA 59.961 61.111 0.00 0.00 40.00 4.26
6 7 0.394352 AACAATGACCAGATCCGGGC 60.394 55.000 0.00 0.00 33.00 6.13
7 8 1.065491 TGAACAATGACCAGATCCGGG 60.065 52.381 0.00 0.00 0.00 5.73
8 9 2.401583 TGAACAATGACCAGATCCGG 57.598 50.000 0.00 0.00 0.00 5.14
9 10 3.801698 AGATGAACAATGACCAGATCCG 58.198 45.455 0.00 0.00 0.00 4.18
10 11 4.747108 CGTAGATGAACAATGACCAGATCC 59.253 45.833 0.00 0.00 0.00 3.36
11 12 5.352284 ACGTAGATGAACAATGACCAGATC 58.648 41.667 0.00 0.00 0.00 2.75
12 13 5.344743 ACGTAGATGAACAATGACCAGAT 57.655 39.130 0.00 0.00 0.00 2.90
13 14 4.801330 ACGTAGATGAACAATGACCAGA 57.199 40.909 0.00 0.00 0.00 3.86
14 15 5.179368 ACAAACGTAGATGAACAATGACCAG 59.821 40.000 0.00 0.00 0.00 4.00
15 16 5.049749 CACAAACGTAGATGAACAATGACCA 60.050 40.000 0.00 0.00 0.00 4.02
16 17 5.049680 ACACAAACGTAGATGAACAATGACC 60.050 40.000 0.00 0.00 0.00 4.02
17 18 5.985781 ACACAAACGTAGATGAACAATGAC 58.014 37.500 0.00 0.00 0.00 3.06
18 19 5.989168 AGACACAAACGTAGATGAACAATGA 59.011 36.000 0.00 0.00 0.00 2.57
19 20 6.146184 AGAGACACAAACGTAGATGAACAATG 59.854 38.462 0.00 0.00 0.00 2.82
20 21 6.223852 AGAGACACAAACGTAGATGAACAAT 58.776 36.000 0.00 0.00 0.00 2.71
21 22 5.597806 AGAGACACAAACGTAGATGAACAA 58.402 37.500 0.00 0.00 0.00 2.83
22 23 5.196341 AGAGACACAAACGTAGATGAACA 57.804 39.130 0.00 0.00 0.00 3.18
23 24 6.526566 AAAGAGACACAAACGTAGATGAAC 57.473 37.500 0.00 0.00 0.00 3.18
24 25 7.654568 TCTAAAGAGACACAAACGTAGATGAA 58.345 34.615 0.00 0.00 0.00 2.57
25 26 7.210718 TCTAAAGAGACACAAACGTAGATGA 57.789 36.000 0.00 0.00 0.00 2.92
26 27 7.044641 CGATCTAAAGAGACACAAACGTAGATG 60.045 40.741 0.00 0.00 33.41 2.90
27 28 6.967767 CGATCTAAAGAGACACAAACGTAGAT 59.032 38.462 0.00 0.00 33.41 1.98
28 29 6.148315 TCGATCTAAAGAGACACAAACGTAGA 59.852 38.462 0.00 0.00 33.41 2.59
29 30 6.312487 TCGATCTAAAGAGACACAAACGTAG 58.688 40.000 0.00 0.00 33.41 3.51
30 31 6.245115 TCGATCTAAAGAGACACAAACGTA 57.755 37.500 0.00 0.00 33.41 3.57
31 32 5.117355 TCGATCTAAAGAGACACAAACGT 57.883 39.130 0.00 0.00 33.41 3.99
32 33 6.237595 GGATTCGATCTAAAGAGACACAAACG 60.238 42.308 0.00 0.00 33.41 3.60
33 34 6.814146 AGGATTCGATCTAAAGAGACACAAAC 59.186 38.462 0.00 0.00 33.41 2.93
34 35 6.936279 AGGATTCGATCTAAAGAGACACAAA 58.064 36.000 0.00 0.00 33.41 2.83
35 36 6.531503 AGGATTCGATCTAAAGAGACACAA 57.468 37.500 0.00 0.00 33.41 3.33
36 37 6.531503 AAGGATTCGATCTAAAGAGACACA 57.468 37.500 0.00 0.00 33.41 3.72
52 53 3.633065 AGTAGTGTAGCTCGGAAGGATTC 59.367 47.826 0.00 0.00 46.67 2.52
53 54 3.633418 AGTAGTGTAGCTCGGAAGGATT 58.367 45.455 0.00 0.00 0.00 3.01
54 55 3.300239 AGTAGTGTAGCTCGGAAGGAT 57.700 47.619 0.00 0.00 0.00 3.24
55 56 2.803030 AGTAGTGTAGCTCGGAAGGA 57.197 50.000 0.00 0.00 0.00 3.36
56 57 4.579340 TGAATAGTAGTGTAGCTCGGAAGG 59.421 45.833 0.00 0.00 0.00 3.46
57 58 5.752892 TGAATAGTAGTGTAGCTCGGAAG 57.247 43.478 0.00 0.00 0.00 3.46
58 59 6.461092 CCAATGAATAGTAGTGTAGCTCGGAA 60.461 42.308 0.00 0.00 0.00 4.30
59 60 5.009710 CCAATGAATAGTAGTGTAGCTCGGA 59.990 44.000 0.00 0.00 0.00 4.55
60 61 5.221263 ACCAATGAATAGTAGTGTAGCTCGG 60.221 44.000 0.00 0.00 0.00 4.63
61 62 5.687730 CACCAATGAATAGTAGTGTAGCTCG 59.312 44.000 0.00 0.00 0.00 5.03
62 63 5.463724 GCACCAATGAATAGTAGTGTAGCTC 59.536 44.000 0.00 0.00 0.00 4.09
63 64 5.104941 TGCACCAATGAATAGTAGTGTAGCT 60.105 40.000 0.00 0.00 0.00 3.32
64 65 5.116180 TGCACCAATGAATAGTAGTGTAGC 58.884 41.667 0.00 0.00 0.00 3.58
65 66 6.573434 TCTGCACCAATGAATAGTAGTGTAG 58.427 40.000 0.00 0.00 38.71 2.74
66 67 6.538945 TCTGCACCAATGAATAGTAGTGTA 57.461 37.500 0.00 0.00 0.00 2.90
67 68 5.420725 TCTGCACCAATGAATAGTAGTGT 57.579 39.130 0.00 0.00 0.00 3.55
68 69 5.819379 ACATCTGCACCAATGAATAGTAGTG 59.181 40.000 6.09 0.00 0.00 2.74
69 70 5.994250 ACATCTGCACCAATGAATAGTAGT 58.006 37.500 6.09 0.00 0.00 2.73
70 71 6.932356 AACATCTGCACCAATGAATAGTAG 57.068 37.500 6.09 0.00 0.00 2.57
71 72 7.362834 CCAAAACATCTGCACCAATGAATAGTA 60.363 37.037 6.09 0.00 0.00 1.82
72 73 6.392354 CAAAACATCTGCACCAATGAATAGT 58.608 36.000 6.09 0.00 0.00 2.12
73 74 5.808540 CCAAAACATCTGCACCAATGAATAG 59.191 40.000 6.09 0.00 0.00 1.73
74 75 5.722263 CCAAAACATCTGCACCAATGAATA 58.278 37.500 6.09 0.00 0.00 1.75
75 76 4.571919 CCAAAACATCTGCACCAATGAAT 58.428 39.130 6.09 0.00 0.00 2.57
76 77 3.803021 GCCAAAACATCTGCACCAATGAA 60.803 43.478 6.09 0.00 0.00 2.57
77 78 2.288948 GCCAAAACATCTGCACCAATGA 60.289 45.455 6.09 0.00 0.00 2.57
78 79 2.070783 GCCAAAACATCTGCACCAATG 58.929 47.619 0.00 0.00 0.00 2.82
79 80 1.337074 CGCCAAAACATCTGCACCAAT 60.337 47.619 0.00 0.00 0.00 3.16
80 81 0.031857 CGCCAAAACATCTGCACCAA 59.968 50.000 0.00 0.00 0.00 3.67
81 82 1.659233 CGCCAAAACATCTGCACCA 59.341 52.632 0.00 0.00 0.00 4.17
82 83 1.734117 GCGCCAAAACATCTGCACC 60.734 57.895 0.00 0.00 0.00 5.01
83 84 2.082366 CGCGCCAAAACATCTGCAC 61.082 57.895 0.00 0.00 0.00 4.57
84 85 2.254951 CGCGCCAAAACATCTGCA 59.745 55.556 0.00 0.00 0.00 4.41
85 86 3.174573 GCGCGCCAAAACATCTGC 61.175 61.111 23.24 0.00 0.00 4.26
86 87 1.512734 GAGCGCGCCAAAACATCTG 60.513 57.895 30.33 0.00 0.00 2.90
87 88 2.870372 GAGCGCGCCAAAACATCT 59.130 55.556 30.33 5.17 0.00 2.90
88 89 2.574212 CGAGCGCGCCAAAACATC 60.574 61.111 30.33 16.04 0.00 3.06
89 90 3.308878 GACGAGCGCGCCAAAACAT 62.309 57.895 30.33 7.05 42.48 2.71
90 91 4.007940 GACGAGCGCGCCAAAACA 62.008 61.111 30.33 0.00 42.48 2.83
91 92 4.736631 GGACGAGCGCGCCAAAAC 62.737 66.667 30.33 15.50 42.48 2.43
92 93 2.845752 ATAGGACGAGCGCGCCAAAA 62.846 55.000 30.33 7.54 42.48 2.44
93 94 3.365291 ATAGGACGAGCGCGCCAAA 62.365 57.895 30.33 6.92 42.48 3.28
94 95 3.833645 ATAGGACGAGCGCGCCAA 61.834 61.111 30.33 5.71 42.48 4.52
95 96 4.569023 CATAGGACGAGCGCGCCA 62.569 66.667 30.33 4.52 42.48 5.69
98 99 4.647615 CCCCATAGGACGAGCGCG 62.648 72.222 8.75 8.75 44.79 6.86
99 100 3.501458 GACCCCATAGGACGAGCGC 62.501 68.421 0.00 0.00 39.89 5.92
100 101 1.392710 AAGACCCCATAGGACGAGCG 61.393 60.000 0.00 0.00 39.89 5.03
101 102 0.105039 CAAGACCCCATAGGACGAGC 59.895 60.000 0.00 0.00 39.89 5.03
102 103 0.753262 CCAAGACCCCATAGGACGAG 59.247 60.000 0.00 0.00 39.89 4.18
103 104 1.335132 GCCAAGACCCCATAGGACGA 61.335 60.000 0.00 0.00 39.89 4.20
104 105 1.146263 GCCAAGACCCCATAGGACG 59.854 63.158 0.00 0.00 39.89 4.79
105 106 0.107165 GTGCCAAGACCCCATAGGAC 60.107 60.000 0.00 0.00 39.89 3.85
106 107 1.622607 CGTGCCAAGACCCCATAGGA 61.623 60.000 0.00 0.00 39.89 2.94
107 108 1.153168 CGTGCCAAGACCCCATAGG 60.153 63.158 0.00 0.00 43.78 2.57
108 109 0.462047 GTCGTGCCAAGACCCCATAG 60.462 60.000 0.00 0.00 32.78 2.23
109 110 1.195442 TGTCGTGCCAAGACCCCATA 61.195 55.000 8.30 0.00 37.80 2.74
110 111 2.063015 TTGTCGTGCCAAGACCCCAT 62.063 55.000 8.30 0.00 37.80 4.00
111 112 2.747443 TTGTCGTGCCAAGACCCCA 61.747 57.895 8.30 0.00 37.80 4.96
112 113 2.112297 TTGTCGTGCCAAGACCCC 59.888 61.111 8.30 0.00 37.80 4.95
113 114 0.818040 AAGTTGTCGTGCCAAGACCC 60.818 55.000 8.30 0.00 37.80 4.46
114 115 1.021968 AAAGTTGTCGTGCCAAGACC 58.978 50.000 8.30 0.00 37.80 3.85
115 116 2.716398 GAAAAGTTGTCGTGCCAAGAC 58.284 47.619 3.67 3.67 38.98 3.01
116 117 1.329292 CGAAAAGTTGTCGTGCCAAGA 59.671 47.619 7.32 0.00 33.80 3.02
117 118 1.329292 TCGAAAAGTTGTCGTGCCAAG 59.671 47.619 14.92 0.00 39.52 3.61
118 119 1.062880 GTCGAAAAGTTGTCGTGCCAA 59.937 47.619 14.92 0.00 39.52 4.52
119 120 0.653636 GTCGAAAAGTTGTCGTGCCA 59.346 50.000 14.92 0.00 39.52 4.92
120 121 0.935196 AGTCGAAAAGTTGTCGTGCC 59.065 50.000 14.92 5.14 39.52 5.01
121 122 1.326548 ACAGTCGAAAAGTTGTCGTGC 59.673 47.619 14.92 9.44 39.52 5.34
122 123 3.651562 AACAGTCGAAAAGTTGTCGTG 57.348 42.857 14.92 9.54 39.52 4.35
123 124 4.390909 AGAAAACAGTCGAAAAGTTGTCGT 59.609 37.500 14.92 0.00 39.52 4.34
124 125 4.893795 AGAAAACAGTCGAAAAGTTGTCG 58.106 39.130 9.27 9.27 35.24 4.35
125 126 6.768078 TGTAGAAAACAGTCGAAAAGTTGTC 58.232 36.000 7.59 7.59 33.01 3.18
126 127 6.730960 TGTAGAAAACAGTCGAAAAGTTGT 57.269 33.333 0.00 0.00 33.01 3.32
127 128 9.710979 TTATTGTAGAAAACAGTCGAAAAGTTG 57.289 29.630 0.00 0.00 39.87 3.16
128 129 9.931210 CTTATTGTAGAAAACAGTCGAAAAGTT 57.069 29.630 0.00 0.00 39.87 2.66
129 130 9.106070 ACTTATTGTAGAAAACAGTCGAAAAGT 57.894 29.630 0.00 0.00 39.87 2.66
130 131 9.931210 AACTTATTGTAGAAAACAGTCGAAAAG 57.069 29.630 0.00 0.00 39.87 2.27
133 134 9.710979 CAAAACTTATTGTAGAAAACAGTCGAA 57.289 29.630 0.00 0.00 39.87 3.71
134 135 7.853929 GCAAAACTTATTGTAGAAAACAGTCGA 59.146 33.333 0.00 0.00 39.87 4.20
135 136 7.855904 AGCAAAACTTATTGTAGAAAACAGTCG 59.144 33.333 0.00 0.00 39.87 4.18
136 137 9.170584 GAGCAAAACTTATTGTAGAAAACAGTC 57.829 33.333 0.00 0.00 39.87 3.51
137 138 7.855904 CGAGCAAAACTTATTGTAGAAAACAGT 59.144 33.333 0.00 0.00 39.87 3.55
138 139 7.323656 CCGAGCAAAACTTATTGTAGAAAACAG 59.676 37.037 0.00 0.00 39.87 3.16
139 140 7.136119 CCGAGCAAAACTTATTGTAGAAAACA 58.864 34.615 0.00 0.00 35.88 2.83
140 141 6.087687 GCCGAGCAAAACTTATTGTAGAAAAC 59.912 38.462 0.00 0.00 32.80 2.43
141 142 6.016610 AGCCGAGCAAAACTTATTGTAGAAAA 60.017 34.615 0.00 0.00 32.80 2.29
142 143 5.472137 AGCCGAGCAAAACTTATTGTAGAAA 59.528 36.000 0.00 0.00 32.80 2.52
143 144 5.001232 AGCCGAGCAAAACTTATTGTAGAA 58.999 37.500 0.00 0.00 32.80 2.10
144 145 4.391830 CAGCCGAGCAAAACTTATTGTAGA 59.608 41.667 0.00 0.00 32.80 2.59
145 146 4.651994 CAGCCGAGCAAAACTTATTGTAG 58.348 43.478 0.00 0.00 32.80 2.74
146 147 3.119990 GCAGCCGAGCAAAACTTATTGTA 60.120 43.478 0.00 0.00 32.80 2.41
147 148 2.351738 GCAGCCGAGCAAAACTTATTGT 60.352 45.455 0.00 0.00 32.80 2.71
148 149 2.095059 AGCAGCCGAGCAAAACTTATTG 60.095 45.455 0.00 0.00 36.85 1.90
149 150 2.095059 CAGCAGCCGAGCAAAACTTATT 60.095 45.455 0.00 0.00 36.85 1.40
150 151 1.470098 CAGCAGCCGAGCAAAACTTAT 59.530 47.619 0.00 0.00 36.85 1.73
151 152 0.874390 CAGCAGCCGAGCAAAACTTA 59.126 50.000 0.00 0.00 36.85 2.24
152 153 1.656441 CAGCAGCCGAGCAAAACTT 59.344 52.632 0.00 0.00 36.85 2.66
153 154 2.912624 GCAGCAGCCGAGCAAAACT 61.913 57.895 0.00 0.00 36.85 2.66
154 155 2.429739 GCAGCAGCCGAGCAAAAC 60.430 61.111 0.00 0.00 36.85 2.43
155 156 2.595463 AGCAGCAGCCGAGCAAAA 60.595 55.556 0.00 0.00 43.56 2.44
156 157 3.359523 CAGCAGCAGCCGAGCAAA 61.360 61.111 0.00 0.00 43.56 3.68
161 162 4.631247 AACAGCAGCAGCAGCCGA 62.631 61.111 6.10 0.00 45.49 5.54
162 163 4.099170 GAACAGCAGCAGCAGCCG 62.099 66.667 6.10 0.00 45.49 5.52
163 164 2.672307 AGAACAGCAGCAGCAGCC 60.672 61.111 6.10 0.00 45.49 4.85
164 165 2.561885 CAGAACAGCAGCAGCAGC 59.438 61.111 3.17 0.46 45.49 5.25
165 166 1.600076 ACCAGAACAGCAGCAGCAG 60.600 57.895 3.17 0.00 45.49 4.24
166 167 1.895231 CACCAGAACAGCAGCAGCA 60.895 57.895 3.17 0.00 45.49 4.41
167 168 2.952245 CACCAGAACAGCAGCAGC 59.048 61.111 0.00 0.00 42.56 5.25
168 169 2.952245 GCACCAGAACAGCAGCAG 59.048 61.111 0.00 0.00 0.00 4.24
169 170 2.974148 CGCACCAGAACAGCAGCA 60.974 61.111 0.00 0.00 0.00 4.41
170 171 4.395583 GCGCACCAGAACAGCAGC 62.396 66.667 0.30 0.00 0.00 5.25
171 172 2.667536 AGCGCACCAGAACAGCAG 60.668 61.111 11.47 0.00 0.00 4.24
172 173 2.974148 CAGCGCACCAGAACAGCA 60.974 61.111 11.47 0.00 0.00 4.41
173 174 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
174 175 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
175 176 2.280797 GACCAGCGCACCAGAACA 60.281 61.111 11.47 0.00 0.00 3.18
176 177 2.167398 TAGGACCAGCGCACCAGAAC 62.167 60.000 11.47 0.00 0.00 3.01
177 178 1.911269 TAGGACCAGCGCACCAGAA 60.911 57.895 11.47 0.00 0.00 3.02
178 179 2.283604 TAGGACCAGCGCACCAGA 60.284 61.111 11.47 0.00 0.00 3.86
179 180 2.125512 GTAGGACCAGCGCACCAG 60.126 66.667 11.47 0.00 0.00 4.00
180 181 4.063967 CGTAGGACCAGCGCACCA 62.064 66.667 11.47 0.00 0.00 4.17
191 192 2.062177 GTGCTAAGGCCCCGTAGGA 61.062 63.158 0.00 0.00 45.58 2.94
192 193 2.504519 GTGCTAAGGCCCCGTAGG 59.495 66.667 0.00 0.00 41.97 3.18
193 194 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
194 195 2.362760 TCGTGCTAAGGCCCCGTA 60.363 61.111 0.00 0.00 37.74 4.02
195 196 3.771160 CTCGTGCTAAGGCCCCGT 61.771 66.667 0.00 0.00 37.74 5.28
196 197 4.530857 CCTCGTGCTAAGGCCCCG 62.531 72.222 0.00 0.00 37.74 5.73
197 198 1.984288 AATCCTCGTGCTAAGGCCCC 61.984 60.000 0.00 0.00 37.74 5.80
198 199 0.107165 AAATCCTCGTGCTAAGGCCC 60.107 55.000 0.00 0.00 37.74 5.80
199 200 1.751437 AAAATCCTCGTGCTAAGGCC 58.249 50.000 0.00 0.00 37.74 5.19
200 201 2.159379 CCAAAAATCCTCGTGCTAAGGC 60.159 50.000 0.00 0.00 39.26 4.35
201 202 3.127030 GTCCAAAAATCCTCGTGCTAAGG 59.873 47.826 0.00 0.00 35.05 2.69
202 203 4.003648 AGTCCAAAAATCCTCGTGCTAAG 58.996 43.478 0.00 0.00 0.00 2.18
203 204 3.751175 CAGTCCAAAAATCCTCGTGCTAA 59.249 43.478 0.00 0.00 0.00 3.09
204 205 3.244422 ACAGTCCAAAAATCCTCGTGCTA 60.244 43.478 0.00 0.00 0.00 3.49
205 206 2.154462 CAGTCCAAAAATCCTCGTGCT 58.846 47.619 0.00 0.00 0.00 4.40
206 207 1.880027 ACAGTCCAAAAATCCTCGTGC 59.120 47.619 0.00 0.00 0.00 5.34
207 208 3.403038 AGACAGTCCAAAAATCCTCGTG 58.597 45.455 0.00 0.00 0.00 4.35
208 209 3.771577 AGACAGTCCAAAAATCCTCGT 57.228 42.857 0.00 0.00 0.00 4.18
209 210 4.319177 AGAAGACAGTCCAAAAATCCTCG 58.681 43.478 0.00 0.00 0.00 4.63
210 211 6.231211 TGTAGAAGACAGTCCAAAAATCCTC 58.769 40.000 0.00 0.00 32.86 3.71
211 212 6.187727 TGTAGAAGACAGTCCAAAAATCCT 57.812 37.500 0.00 0.00 32.86 3.24
212 213 6.262273 TGTTGTAGAAGACAGTCCAAAAATCC 59.738 38.462 0.00 0.00 39.88 3.01
213 214 7.259290 TGTTGTAGAAGACAGTCCAAAAATC 57.741 36.000 0.00 0.00 39.88 2.17
214 215 7.339466 ACTTGTTGTAGAAGACAGTCCAAAAAT 59.661 33.333 0.00 0.00 39.88 1.82
215 216 6.657541 ACTTGTTGTAGAAGACAGTCCAAAAA 59.342 34.615 0.00 0.00 39.88 1.94
216 217 6.177610 ACTTGTTGTAGAAGACAGTCCAAAA 58.822 36.000 0.00 0.00 39.88 2.44
217 218 5.741011 ACTTGTTGTAGAAGACAGTCCAAA 58.259 37.500 0.00 0.00 39.88 3.28
218 219 5.353394 ACTTGTTGTAGAAGACAGTCCAA 57.647 39.130 0.00 0.00 39.88 3.53
219 220 5.353394 AACTTGTTGTAGAAGACAGTCCA 57.647 39.130 0.00 0.00 39.88 4.02
220 221 6.487103 CAAAACTTGTTGTAGAAGACAGTCC 58.513 40.000 0.00 0.00 39.88 3.85
221 222 5.965918 GCAAAACTTGTTGTAGAAGACAGTC 59.034 40.000 0.00 0.00 39.88 3.51
222 223 5.648092 AGCAAAACTTGTTGTAGAAGACAGT 59.352 36.000 0.00 0.00 39.88 3.55
223 224 6.124088 AGCAAAACTTGTTGTAGAAGACAG 57.876 37.500 0.00 0.00 39.88 3.51
224 225 5.220586 CGAGCAAAACTTGTTGTAGAAGACA 60.221 40.000 0.00 0.00 35.78 3.41
225 226 5.198274 CGAGCAAAACTTGTTGTAGAAGAC 58.802 41.667 0.00 0.00 0.00 3.01
226 227 4.272504 CCGAGCAAAACTTGTTGTAGAAGA 59.727 41.667 0.00 0.00 0.00 2.87
227 228 4.527564 CCGAGCAAAACTTGTTGTAGAAG 58.472 43.478 0.00 0.00 0.00 2.85
228 229 3.242936 GCCGAGCAAAACTTGTTGTAGAA 60.243 43.478 0.00 0.00 0.00 2.10
229 230 2.289547 GCCGAGCAAAACTTGTTGTAGA 59.710 45.455 0.00 0.00 0.00 2.59
230 231 2.290641 AGCCGAGCAAAACTTGTTGTAG 59.709 45.455 0.00 0.00 0.00 2.74
231 232 2.032799 CAGCCGAGCAAAACTTGTTGTA 59.967 45.455 0.00 0.00 0.00 2.41
232 233 1.102978 AGCCGAGCAAAACTTGTTGT 58.897 45.000 0.00 0.00 0.00 3.32
233 234 1.480205 CAGCCGAGCAAAACTTGTTG 58.520 50.000 0.00 0.00 0.00 3.33
234 235 0.249031 GCAGCCGAGCAAAACTTGTT 60.249 50.000 0.00 0.00 0.00 2.83
235 236 1.103398 AGCAGCCGAGCAAAACTTGT 61.103 50.000 0.00 0.00 36.85 3.16
236 237 0.662374 CAGCAGCCGAGCAAAACTTG 60.662 55.000 0.00 0.00 36.85 3.16
237 238 1.656441 CAGCAGCCGAGCAAAACTT 59.344 52.632 0.00 0.00 36.85 2.66
238 239 2.912624 GCAGCAGCCGAGCAAAACT 61.913 57.895 0.00 0.00 36.85 2.66
239 240 2.429739 GCAGCAGCCGAGCAAAAC 60.430 61.111 0.00 0.00 36.85 2.43
240 241 2.595463 AGCAGCAGCCGAGCAAAA 60.595 55.556 0.00 0.00 43.56 2.44
241 242 3.359523 CAGCAGCAGCCGAGCAAA 61.360 61.111 0.00 0.00 43.56 3.68
242 243 4.631247 ACAGCAGCAGCCGAGCAA 62.631 61.111 0.00 0.00 43.56 3.91
243 244 4.631247 AACAGCAGCAGCCGAGCA 62.631 61.111 0.00 0.00 43.56 4.26
244 245 3.797546 GAACAGCAGCAGCCGAGC 61.798 66.667 0.00 0.00 43.56 5.03
245 246 2.047465 AGAACAGCAGCAGCCGAG 60.047 61.111 0.00 0.00 43.56 4.63
246 247 2.357881 CAGAACAGCAGCAGCCGA 60.358 61.111 0.00 0.00 43.56 5.54
247 248 3.429141 CCAGAACAGCAGCAGCCG 61.429 66.667 0.00 0.00 43.56 5.52
248 249 2.282040 ACCAGAACAGCAGCAGCC 60.282 61.111 0.00 0.00 43.56 4.85
249 250 2.952245 CACCAGAACAGCAGCAGC 59.048 61.111 0.00 0.00 42.56 5.25
250 251 2.952245 GCACCAGAACAGCAGCAG 59.048 61.111 0.00 0.00 0.00 4.24
251 252 2.974148 CGCACCAGAACAGCAGCA 60.974 61.111 0.00 0.00 0.00 4.41
275 276 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
278 279 3.599285 TTGTCGTGCTAAGGCCCCG 62.599 63.158 0.00 0.00 37.74 5.73
280 281 1.173913 AATTTGTCGTGCTAAGGCCC 58.826 50.000 0.00 0.00 37.74 5.80
282 283 2.908626 CGAAAATTTGTCGTGCTAAGGC 59.091 45.455 0.63 0.00 39.26 4.35
297 298 8.110860 AGATTTTGTGGTAGACAATCGAAAAT 57.889 30.769 0.00 0.00 44.23 1.82
312 313 7.027161 CCGACCAAAACTTATAGATTTTGTGG 58.973 38.462 16.35 12.78 41.95 4.17
313 314 6.526674 GCCGACCAAAACTTATAGATTTTGTG 59.473 38.462 16.35 12.28 41.95 3.33
318 319 4.335594 GCAGCCGACCAAAACTTATAGATT 59.664 41.667 0.00 0.00 0.00 2.40
320 321 3.267483 GCAGCCGACCAAAACTTATAGA 58.733 45.455 0.00 0.00 0.00 1.98
321 322 2.030457 CGCAGCCGACCAAAACTTATAG 59.970 50.000 0.00 0.00 36.29 1.31
323 324 0.802494 CGCAGCCGACCAAAACTTAT 59.198 50.000 0.00 0.00 36.29 1.73
325 326 1.525077 TCGCAGCCGACCAAAACTT 60.525 52.632 0.00 0.00 38.82 2.66
326 327 2.110213 TCGCAGCCGACCAAAACT 59.890 55.556 0.00 0.00 38.82 2.66
335 336 2.664185 CCTCCATCATCGCAGCCG 60.664 66.667 0.00 0.00 0.00 5.52
338 339 2.429058 CCCCCTCCATCATCGCAG 59.571 66.667 0.00 0.00 0.00 5.18
354 355 2.202932 ACGCGCTGTCATCATCCC 60.203 61.111 5.73 0.00 0.00 3.85
363 364 2.016704 CGAACTGAAGACGCGCTGT 61.017 57.895 5.73 5.01 0.00 4.40
364 365 1.073216 ATCGAACTGAAGACGCGCTG 61.073 55.000 5.73 1.02 0.00 5.18
365 366 0.388649 AATCGAACTGAAGACGCGCT 60.389 50.000 5.73 0.50 0.00 5.92
366 367 0.023858 GAATCGAACTGAAGACGCGC 59.976 55.000 5.73 0.00 0.00 6.86
367 368 1.336877 TGAATCGAACTGAAGACGCG 58.663 50.000 3.53 3.53 0.00 6.01
368 369 3.663908 CATTGAATCGAACTGAAGACGC 58.336 45.455 0.00 0.00 0.00 5.19
369 370 3.369147 AGCATTGAATCGAACTGAAGACG 59.631 43.478 0.00 0.00 0.00 4.18
370 371 4.935885 AGCATTGAATCGAACTGAAGAC 57.064 40.909 0.00 0.00 0.00 3.01
389 390 0.531200 AGACCACCTAGCGTACAAGC 59.469 55.000 0.00 0.00 37.41 4.01
435 436 3.006940 GGCGATACAATGAACACCAGAA 58.993 45.455 0.00 0.00 0.00 3.02
439 440 1.670811 CAGGGCGATACAATGAACACC 59.329 52.381 0.00 0.00 0.00 4.16
446 447 3.884895 TGTTCAATCAGGGCGATACAAT 58.115 40.909 0.00 0.00 32.51 2.71
449 450 4.695217 TTTTGTTCAATCAGGGCGATAC 57.305 40.909 0.00 0.00 32.51 2.24
452 453 5.713792 TTTATTTTGTTCAATCAGGGCGA 57.286 34.783 0.00 0.00 0.00 5.54
453 454 6.618379 GCTTTTTATTTTGTTCAATCAGGGCG 60.618 38.462 0.00 0.00 0.00 6.13
456 457 8.592105 TCTGCTTTTTATTTTGTTCAATCAGG 57.408 30.769 0.00 0.00 0.00 3.86
457 458 9.853921 GTTCTGCTTTTTATTTTGTTCAATCAG 57.146 29.630 0.00 0.00 0.00 2.90
478 479 8.095792 AGATTCTATCTTGGATAGCATGTTCTG 58.904 37.037 9.06 0.00 35.76 3.02
485 486 7.565190 ATTCCAGATTCTATCTTGGATAGCA 57.435 36.000 9.06 0.59 37.58 3.49
486 487 9.377312 GTTATTCCAGATTCTATCTTGGATAGC 57.623 37.037 9.06 0.00 37.58 2.97
497 498 7.013083 GTGACCTAGACGTTATTCCAGATTCTA 59.987 40.741 0.00 0.00 0.00 2.10
498 499 5.892119 TGACCTAGACGTTATTCCAGATTCT 59.108 40.000 0.00 0.00 0.00 2.40
503 504 4.985538 AGTGACCTAGACGTTATTCCAG 57.014 45.455 0.00 0.00 0.00 3.86
519 520 7.362662 TGAATTTTGCAGTGAAGATAAGTGAC 58.637 34.615 0.00 0.00 0.00 3.67
566 567 7.027778 AGTTGTTTTACTCAACATCCTTCAC 57.972 36.000 10.59 0.00 44.97 3.18
567 568 6.262273 GGAGTTGTTTTACTCAACATCCTTCA 59.738 38.462 10.59 0.00 45.07 3.02
581 588 5.626142 TGGAGTATGCAAGGAGTTGTTTTA 58.374 37.500 0.00 0.00 35.92 1.52
623 630 2.212752 TCCTTGAGAGGGGGCATATT 57.787 50.000 0.00 0.00 43.72 1.28
650 657 7.335924 GTGGTGCTGAATTATTCTGGTAACTAA 59.664 37.037 12.51 0.00 37.61 2.24
652 659 5.648092 GTGGTGCTGAATTATTCTGGTAACT 59.352 40.000 12.51 0.00 37.61 2.24
653 660 5.414454 TGTGGTGCTGAATTATTCTGGTAAC 59.586 40.000 12.51 6.01 0.00 2.50
654 661 5.565509 TGTGGTGCTGAATTATTCTGGTAA 58.434 37.500 12.51 0.00 0.00 2.85
656 663 4.032960 TGTGGTGCTGAATTATTCTGGT 57.967 40.909 12.51 0.00 0.00 4.00
667 677 0.476338 TTTAGCCCTTGTGGTGCTGA 59.524 50.000 0.00 0.00 39.23 4.26
696 706 4.887071 TGATGACTTTTGTGTAGGCTGTTT 59.113 37.500 0.00 0.00 0.00 2.83
697 707 4.460263 TGATGACTTTTGTGTAGGCTGTT 58.540 39.130 0.00 0.00 0.00 3.16
767 787 5.185828 GGCAGATTTGATTTCTGTTTAGGGT 59.814 40.000 2.97 0.00 42.12 4.34
828 852 2.821810 GAAGAAGGGGCAGCGAGC 60.822 66.667 0.00 0.00 44.65 5.03
832 856 0.962855 GAAGTGGAAGAAGGGGCAGC 60.963 60.000 0.00 0.00 0.00 5.25
833 857 0.322906 GGAAGTGGAAGAAGGGGCAG 60.323 60.000 0.00 0.00 0.00 4.85
835 859 1.000771 GGGAAGTGGAAGAAGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
836 860 0.038310 GTGGGAAGTGGAAGAAGGGG 59.962 60.000 0.00 0.00 0.00 4.79
839 863 0.771127 TGGGTGGGAAGTGGAAGAAG 59.229 55.000 0.00 0.00 0.00 2.85
841 865 0.991920 GATGGGTGGGAAGTGGAAGA 59.008 55.000 0.00 0.00 0.00 2.87
846 871 1.609783 GGGAGATGGGTGGGAAGTG 59.390 63.158 0.00 0.00 0.00 3.16
852 879 2.929483 CCATGGGGAGATGGGTGG 59.071 66.667 2.85 0.00 39.53 4.61
918 956 3.372554 GACCAGCTCCCTACGCCAC 62.373 68.421 0.00 0.00 0.00 5.01
919 957 3.075005 GACCAGCTCCCTACGCCA 61.075 66.667 0.00 0.00 0.00 5.69
920 958 2.180159 TTTGACCAGCTCCCTACGCC 62.180 60.000 0.00 0.00 0.00 5.68
921 959 0.321298 TTTTGACCAGCTCCCTACGC 60.321 55.000 0.00 0.00 0.00 4.42
939 977 1.221293 CTGAGCTAGGCTGCTGCTT 59.779 57.895 15.64 10.62 44.17 3.91
940 978 2.901813 CTGAGCTAGGCTGCTGCT 59.098 61.111 15.64 12.54 44.17 4.24
963 1001 0.737219 GAGGTTGGATGCTGTGATGC 59.263 55.000 0.00 0.00 0.00 3.91
965 1003 0.994247 TGGAGGTTGGATGCTGTGAT 59.006 50.000 0.00 0.00 0.00 3.06
1074 1115 2.404995 CGCCGGGTAGTCGAAGTCT 61.405 63.158 2.18 0.00 0.00 3.24
1107 1148 1.080705 CGTGTCGGAGTTGGAGTCC 60.081 63.158 0.73 0.73 34.30 3.85
1272 1325 0.393944 TATGTGGAGACGAGCCGAGT 60.394 55.000 1.50 0.00 0.00 4.18
1274 1327 0.678684 TGTATGTGGAGACGAGCCGA 60.679 55.000 1.50 0.00 0.00 5.54
1367 1423 1.970917 GCACTGACGAGCCATTTCGG 61.971 60.000 0.00 0.00 44.57 4.30
1394 1457 3.320879 ATCCTGAGGGCACACGCAG 62.321 63.158 0.00 0.00 41.24 5.18
1401 1464 0.895100 GTTGCAACATCCTGAGGGCA 60.895 55.000 24.52 0.00 0.00 5.36
1419 1482 1.291877 GATTCGTTCCGTGCTGCTGT 61.292 55.000 0.00 0.00 0.00 4.40
1430 1493 1.850441 CATCCGTACACCGATTCGTTC 59.150 52.381 5.20 0.00 39.56 3.95
1470 1535 1.066502 TGCCATCAAGGAAACGATCGA 60.067 47.619 24.34 0.00 41.22 3.59
1615 1688 3.695606 GGACCAGCCGCAGAGTGA 61.696 66.667 0.00 0.00 0.00 3.41
1627 1700 2.107378 TGAATGCAACTACCAAGGACCA 59.893 45.455 0.00 0.00 0.00 4.02
1730 1809 1.062587 CGATCTCACCGAAATGTTGCC 59.937 52.381 0.00 0.00 0.00 4.52
1740 1819 1.658717 GATCCGCACGATCTCACCG 60.659 63.158 0.00 0.00 43.65 4.94
1753 1832 0.322456 TTGCTTTCCCCACAGATCCG 60.322 55.000 0.00 0.00 0.00 4.18
1792 1871 9.169468 CAATTCTTTGTACACTGTATGAACAAC 57.831 33.333 0.00 0.00 34.49 3.32
1811 1892 3.611530 CGGATCGCAACAAACCAATTCTT 60.612 43.478 0.00 0.00 0.00 2.52
1818 1899 1.969589 ACCCGGATCGCAACAAACC 60.970 57.895 0.73 0.00 0.00 3.27
1858 1945 9.399797 TGAGAGCACATGATAATTTAGATGTTT 57.600 29.630 0.00 0.00 0.00 2.83
1860 1947 9.570468 AATGAGAGCACATGATAATTTAGATGT 57.430 29.630 0.00 0.00 0.00 3.06
1903 1998 0.965363 AGGTGCAAAGTATTGGCCCG 60.965 55.000 0.00 0.00 37.02 6.13
1925 2020 8.626526 GCCTCGGAATGATTAAACCTATAAAAA 58.373 33.333 0.00 0.00 0.00 1.94
1937 2034 2.421388 CCACTTGGCCTCGGAATGATTA 60.421 50.000 3.32 0.00 0.00 1.75
1945 2042 1.746615 CATCACCACTTGGCCTCGG 60.747 63.158 3.32 1.01 39.32 4.63
1958 2055 7.758613 TTTTCGAAAAGTAAAAACCCATCAC 57.241 32.000 19.08 0.00 0.00 3.06
1980 2077 6.484364 ACACCCATCATCAGTTTTCTTTTT 57.516 33.333 0.00 0.00 0.00 1.94
1985 2082 4.280677 TCCAAACACCCATCATCAGTTTTC 59.719 41.667 0.00 0.00 30.68 2.29
1987 2084 3.828451 CTCCAAACACCCATCATCAGTTT 59.172 43.478 0.00 0.00 33.09 2.66
2041 2138 4.511082 GCAAGCCATTTGTTTGCTTCTTAA 59.489 37.500 6.51 0.00 43.10 1.85
2092 2189 4.162320 TGATCAACAGCTTAACTAGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2095 2192 6.946340 TCATTGATCAACAGCTTAACTAGGA 58.054 36.000 11.07 0.00 0.00 2.94
2097 2194 8.429493 TGATCATTGATCAACAGCTTAACTAG 57.571 34.615 23.72 0.00 44.70 2.57
2170 2268 9.383519 TGAAACCAATACTGCAAAAATGTTTTA 57.616 25.926 0.00 0.00 0.00 1.52
2189 2287 4.963318 TTTATTTGTGCCCATGAAACCA 57.037 36.364 0.00 0.00 0.00 3.67
2190 2288 6.816134 AATTTTATTTGTGCCCATGAAACC 57.184 33.333 0.00 0.00 0.00 3.27
2198 2296 6.746822 GCTTTGCATAAATTTTATTTGTGCCC 59.253 34.615 22.49 10.73 43.08 5.36
2394 2493 4.805719 ACACATATCAGCATACAGAACACG 59.194 41.667 0.00 0.00 0.00 4.49
2406 2505 6.578023 AGAAGTAGAGGAAACACATATCAGC 58.422 40.000 0.00 0.00 0.00 4.26
2666 2882 9.883142 CTAAGGAATAAATGCTTCTAGGATAGG 57.117 37.037 0.00 0.00 40.56 2.57
2843 3061 5.010922 TGGTGAAATGCAGAAATTTAGTGCT 59.989 36.000 20.20 5.97 38.09 4.40
2849 3067 9.729281 ATTTATTCTGGTGAAATGCAGAAATTT 57.271 25.926 0.00 0.00 37.25 1.82
2936 3155 9.647797 TTACGACATCAAGCTTTAGATTTTCTA 57.352 29.630 0.00 0.00 0.00 2.10
3004 3223 9.802039 ATACTCTTAAAACTTTGTGACCCAATA 57.198 29.630 0.00 0.00 31.81 1.90
3005 3224 8.706322 ATACTCTTAAAACTTTGTGACCCAAT 57.294 30.769 0.00 0.00 31.81 3.16
3065 3284 5.506730 TTGGGTGGTTATCTGTTGTATCA 57.493 39.130 0.00 0.00 0.00 2.15
3083 3302 3.940319 TGGTGAAATCAAATGCATTGGG 58.060 40.909 13.82 8.84 39.62 4.12
3091 3310 8.472413 CCATAGTCTGAATTGGTGAAATCAAAT 58.528 33.333 0.00 0.00 0.00 2.32
3157 3379 8.568617 AGTAATCCAACTGAGGAATATACCTT 57.431 34.615 0.00 0.00 41.92 3.50
3158 3380 8.568617 AAGTAATCCAACTGAGGAATATACCT 57.431 34.615 0.00 0.00 41.92 3.08
3244 3466 3.971245 ATGACTTGGTCCTCTGTTCTC 57.029 47.619 0.00 0.00 0.00 2.87
3283 3505 3.809279 GCCCAGTTTCAAATTCCAACAAG 59.191 43.478 0.00 0.00 0.00 3.16
3652 3883 3.118811 TGTTGGGTCTTTGCCAAAAAGAG 60.119 43.478 0.89 0.00 36.99 2.85
3905 4136 6.837312 TGATATACGGAAAGGTCCAAATGAT 58.163 36.000 0.00 0.00 45.26 2.45
3916 4147 9.751542 GACCCTATTGATATGATATACGGAAAG 57.248 37.037 0.00 0.00 0.00 2.62
3921 4152 9.794719 TCCTAGACCCTATTGATATGATATACG 57.205 37.037 0.00 0.00 0.00 3.06
3994 4225 5.013079 AGTCCAACTGTCCAAATGATAGTCA 59.987 40.000 0.00 0.00 43.83 3.41
3998 4229 8.160765 TCTTTTAGTCCAACTGTCCAAATGATA 58.839 33.333 0.00 0.00 0.00 2.15
3999 4230 7.004086 TCTTTTAGTCCAACTGTCCAAATGAT 58.996 34.615 0.00 0.00 0.00 2.45
4000 4231 6.361433 TCTTTTAGTCCAACTGTCCAAATGA 58.639 36.000 0.00 0.00 0.00 2.57
4001 4232 6.486657 TCTCTTTTAGTCCAACTGTCCAAATG 59.513 38.462 0.00 0.00 0.00 2.32
4002 4233 6.601332 TCTCTTTTAGTCCAACTGTCCAAAT 58.399 36.000 0.00 0.00 0.00 2.32
4003 4234 5.996644 TCTCTTTTAGTCCAACTGTCCAAA 58.003 37.500 0.00 0.00 0.00 3.28
4004 4235 5.454755 CCTCTCTTTTAGTCCAACTGTCCAA 60.455 44.000 0.00 0.00 0.00 3.53
4005 4236 4.040461 CCTCTCTTTTAGTCCAACTGTCCA 59.960 45.833 0.00 0.00 0.00 4.02
4006 4237 4.283722 TCCTCTCTTTTAGTCCAACTGTCC 59.716 45.833 0.00 0.00 0.00 4.02
4007 4238 5.470047 TCCTCTCTTTTAGTCCAACTGTC 57.530 43.478 0.00 0.00 0.00 3.51
4008 4239 5.888982 TTCCTCTCTTTTAGTCCAACTGT 57.111 39.130 0.00 0.00 0.00 3.55
4009 4240 6.055588 TGTTTCCTCTCTTTTAGTCCAACTG 58.944 40.000 0.00 0.00 0.00 3.16
4010 4241 6.126739 ACTGTTTCCTCTCTTTTAGTCCAACT 60.127 38.462 0.00 0.00 0.00 3.16
4011 4242 6.017852 CACTGTTTCCTCTCTTTTAGTCCAAC 60.018 42.308 0.00 0.00 0.00 3.77
4012 4243 6.055588 CACTGTTTCCTCTCTTTTAGTCCAA 58.944 40.000 0.00 0.00 0.00 3.53
4013 4244 5.365605 TCACTGTTTCCTCTCTTTTAGTCCA 59.634 40.000 0.00 0.00 0.00 4.02
4014 4245 5.697178 GTCACTGTTTCCTCTCTTTTAGTCC 59.303 44.000 0.00 0.00 0.00 3.85
4015 4246 5.402867 CGTCACTGTTTCCTCTCTTTTAGTC 59.597 44.000 0.00 0.00 0.00 2.59
4016 4247 5.290386 CGTCACTGTTTCCTCTCTTTTAGT 58.710 41.667 0.00 0.00 0.00 2.24
4017 4248 4.150804 GCGTCACTGTTTCCTCTCTTTTAG 59.849 45.833 0.00 0.00 0.00 1.85
4050 4281 0.179171 CAGCATGAGCAAAAGAGCCG 60.179 55.000 0.00 0.00 45.49 5.52
4058 4289 3.969287 ACTAGAAGACAGCATGAGCAA 57.031 42.857 0.00 0.00 45.49 3.91
4208 7384 9.586435 ACTTTCAAATCCTGTAAAAGTTTGAAG 57.414 29.630 10.30 8.29 44.57 3.02
4241 7417 0.659427 CCGTATCCACAGCATGCTTG 59.341 55.000 19.98 18.52 42.53 4.01
4473 7649 6.074463 CGCTCATTAGAACCTCGGTTTTATAC 60.074 42.308 2.39 0.00 38.60 1.47
4508 7684 9.357652 CATTGGTTTATTAATTCAGTTGTGGAG 57.642 33.333 0.00 0.00 0.00 3.86
4509 7685 8.865090 ACATTGGTTTATTAATTCAGTTGTGGA 58.135 29.630 0.00 0.00 0.00 4.02
4606 7782 9.753674 TCACCAAAAGAATAGGATTTGAACTAT 57.246 29.630 0.00 0.00 36.41 2.12
4618 7794 4.019174 AGGGCACATCACCAAAAGAATAG 58.981 43.478 0.00 0.00 0.00 1.73
4620 7796 2.564062 CAGGGCACATCACCAAAAGAAT 59.436 45.455 0.00 0.00 0.00 2.40
4638 7814 3.262420 CTCGGTTGGTCATTAGAACAGG 58.738 50.000 0.00 0.00 43.57 4.00
4646 7822 2.649531 TTGAACCTCGGTTGGTCATT 57.350 45.000 5.98 0.00 39.83 2.57
4647 7823 2.649531 TTTGAACCTCGGTTGGTCAT 57.350 45.000 5.98 0.00 39.83 3.06
4650 7826 2.292292 CGAAATTTGAACCTCGGTTGGT 59.708 45.455 5.98 0.00 43.11 3.67
4652 7828 3.619233 ACGAAATTTGAACCTCGGTTG 57.381 42.857 5.98 0.00 38.60 3.77
4655 7831 3.619233 ACAACGAAATTTGAACCTCGG 57.381 42.857 0.00 0.00 35.64 4.63
4656 7832 4.148891 GCTACAACGAAATTTGAACCTCG 58.851 43.478 0.00 0.00 37.33 4.63
4657 7833 5.103290 TGCTACAACGAAATTTGAACCTC 57.897 39.130 0.00 0.00 0.00 3.85
4659 7835 4.089923 GCATGCTACAACGAAATTTGAACC 59.910 41.667 11.37 0.00 0.00 3.62
4660 7836 4.679197 TGCATGCTACAACGAAATTTGAAC 59.321 37.500 20.33 0.00 0.00 3.18
4661 7837 4.864633 TGCATGCTACAACGAAATTTGAA 58.135 34.783 20.33 0.00 0.00 2.69
4662 7838 4.495911 TGCATGCTACAACGAAATTTGA 57.504 36.364 20.33 0.00 0.00 2.69
4663 7839 4.681025 ACTTGCATGCTACAACGAAATTTG 59.319 37.500 20.33 0.00 0.00 2.32
4690 7866 3.638160 TGCAAAATGTGAAGCTCTCCTTT 59.362 39.130 0.00 0.00 32.78 3.11
4786 7962 6.315091 TCTTACGATAGCTCAACTGGATAC 57.685 41.667 0.00 0.00 42.67 2.24
4852 8030 1.598130 ACACTTCAGTTCCCGCAGC 60.598 57.895 0.00 0.00 0.00 5.25
4953 8131 5.947663 TGGATTGGAGGTTTAGAAGTGAAA 58.052 37.500 0.00 0.00 0.00 2.69
4966 8145 2.228822 CGGTTTTCTGTTGGATTGGAGG 59.771 50.000 0.00 0.00 0.00 4.30
4967 8146 2.228822 CCGGTTTTCTGTTGGATTGGAG 59.771 50.000 0.00 0.00 0.00 3.86
4970 8149 1.272212 CCCCGGTTTTCTGTTGGATTG 59.728 52.381 0.00 0.00 0.00 2.67
4972 8151 0.251608 CCCCCGGTTTTCTGTTGGAT 60.252 55.000 0.00 0.00 0.00 3.41
4973 8152 1.151908 CCCCCGGTTTTCTGTTGGA 59.848 57.895 0.00 0.00 0.00 3.53
4974 8153 3.771978 CCCCCGGTTTTCTGTTGG 58.228 61.111 0.00 0.00 0.00 3.77
4994 8173 7.434764 CGTGTACAGTACAGTAATTTTTCGAG 58.565 38.462 14.03 0.00 39.77 4.04
5021 8206 4.239203 GATCGAGTCGAGCGGCGT 62.239 66.667 21.36 2.19 39.91 5.68
5024 8209 0.590230 GAAGTGATCGAGTCGAGCGG 60.590 60.000 24.15 0.00 45.61 5.52
5029 8214 2.420372 TCTCCAAGAAGTGATCGAGTCG 59.580 50.000 6.09 6.09 0.00 4.18
5032 8217 4.383850 ACATCTCCAAGAAGTGATCGAG 57.616 45.455 0.00 0.00 0.00 4.04
5034 8219 4.615949 CCTACATCTCCAAGAAGTGATCG 58.384 47.826 0.00 0.00 28.29 3.69
5339 8528 7.652105 CCGTTAAATGCTACTGTAGTATGATGT 59.348 37.037 17.33 7.67 31.27 3.06
5340 8529 7.359264 GCCGTTAAATGCTACTGTAGTATGATG 60.359 40.741 17.33 11.94 31.27 3.07
5342 8531 5.981315 GCCGTTAAATGCTACTGTAGTATGA 59.019 40.000 17.33 7.67 31.27 2.15
5346 8535 3.055675 TGGCCGTTAAATGCTACTGTAGT 60.056 43.478 15.71 0.00 0.00 2.73
5347 8536 3.527533 TGGCCGTTAAATGCTACTGTAG 58.472 45.455 10.48 10.48 0.00 2.74
5351 8540 4.134563 CCTAATGGCCGTTAAATGCTACT 58.865 43.478 18.03 0.00 0.00 2.57
5361 8550 2.107366 CCATTTTCCCTAATGGCCGTT 58.893 47.619 16.02 16.02 45.75 4.44
5375 8564 4.962362 CCCAGGTAATTAGCTTCCCATTTT 59.038 41.667 14.43 0.00 30.45 1.82
5379 8568 2.777692 CTCCCAGGTAATTAGCTTCCCA 59.222 50.000 14.43 0.00 30.45 4.37
5473 8666 2.612115 ACCAGCCAGAAGGAGGGG 60.612 66.667 0.00 0.00 36.31 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.