Multiple sequence alignment - TraesCS1B01G260300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G260300 chr1B 100.000 6976 0 0 1 6976 457750186 457757161 0.000000e+00 12883.0
1 TraesCS1B01G260300 chr1B 80.211 475 61 23 2609 3057 670037160 670037627 6.750000e-85 326.0
2 TraesCS1B01G260300 chr1B 97.159 176 1 3 3117 3288 457753245 457753420 1.900000e-75 294.0
3 TraesCS1B01G260300 chr1B 97.159 176 1 3 3060 3235 457753302 457753473 1.900000e-75 294.0
4 TraesCS1B01G260300 chr1B 96.552 145 5 0 5368 5512 647895427 647895283 2.510000e-59 241.0
5 TraesCS1B01G260300 chr1B 95.833 120 1 3 3173 3288 457753245 457753364 2.570000e-44 191.0
6 TraesCS1B01G260300 chr1B 95.833 120 1 3 3060 3179 457753358 457753473 2.570000e-44 191.0
7 TraesCS1B01G260300 chr1B 92.562 121 9 0 4587 4707 6016164 6016284 2.590000e-39 174.0
8 TraesCS1B01G260300 chr1B 92.188 64 1 3 3229 3288 457753245 457753308 3.470000e-13 87.9
9 TraesCS1B01G260300 chr1B 92.188 64 1 3 3060 3123 457753414 457753473 3.470000e-13 87.9
10 TraesCS1B01G260300 chr1A 87.145 1797 93 38 1 1739 441750988 441752704 0.000000e+00 1912.0
11 TraesCS1B01G260300 chr1A 92.623 854 28 15 4296 5128 441754252 441755091 0.000000e+00 1195.0
12 TraesCS1B01G260300 chr1A 96.141 622 6 10 3173 3776 449553974 449554595 0.000000e+00 1000.0
13 TraesCS1B01G260300 chr1A 92.869 589 12 7 2618 3179 449553505 449554090 0.000000e+00 828.0
14 TraesCS1B01G260300 chr1A 92.424 528 21 10 5507 6016 441755833 441756359 0.000000e+00 736.0
15 TraesCS1B01G260300 chr1A 86.433 656 55 16 6077 6726 441756442 441757069 0.000000e+00 688.0
16 TraesCS1B01G260300 chr1A 80.913 854 75 32 1804 2619 441752727 441753530 1.680000e-165 593.0
17 TraesCS1B01G260300 chr1A 86.717 527 35 20 3772 4279 441753527 441754037 2.840000e-153 553.0
18 TraesCS1B01G260300 chr1A 91.411 163 12 2 6798 6960 441757526 441757686 9.110000e-54 222.0
19 TraesCS1B01G260300 chr1A 88.398 181 8 8 5175 5350 441755636 441755808 9.170000e-49 206.0
20 TraesCS1B01G260300 chr1A 92.188 64 1 3 3060 3123 449554031 449554090 3.470000e-13 87.9
21 TraesCS1B01G260300 chr1D 91.069 1254 57 25 4167 5371 341839338 341838091 0.000000e+00 1644.0
22 TraesCS1B01G260300 chr1D 91.042 960 32 17 795 1739 341841560 341840640 0.000000e+00 1247.0
23 TraesCS1B01G260300 chr1D 91.922 817 44 10 5532 6334 341838082 341837274 0.000000e+00 1123.0
24 TraesCS1B01G260300 chr1D 87.225 681 36 23 149 796 341842262 341841600 0.000000e+00 728.0
25 TraesCS1B01G260300 chr1D 84.816 652 37 26 1786 2403 341840640 341840017 3.600000e-167 599.0
26 TraesCS1B01G260300 chr1D 79.713 488 37 28 3165 3630 186715709 186716156 5.290000e-76 296.0
27 TraesCS1B01G260300 chr1D 90.449 178 10 4 3916 4087 341839560 341839384 1.960000e-55 228.0
28 TraesCS1B01G260300 chr1D 85.849 212 17 11 2417 2619 341839958 341839751 5.480000e-51 213.0
29 TraesCS1B01G260300 chr1D 95.192 104 3 2 1197 1300 475248660 475248559 5.600000e-36 163.0
30 TraesCS1B01G260300 chr1D 93.519 108 7 0 3772 3879 341839754 341839647 2.010000e-35 161.0
31 TraesCS1B01G260300 chr1D 93.478 46 3 0 1061 1106 475248715 475248670 1.260000e-07 69.4
32 TraesCS1B01G260300 chr1D 97.436 39 0 1 5507 5544 426933833 426933871 1.620000e-06 65.8
33 TraesCS1B01G260300 chr1D 97.368 38 0 1 5507 5543 441286238 441286275 5.840000e-06 63.9
34 TraesCS1B01G260300 chr7B 93.604 641 12 11 3173 3784 345496650 345496010 0.000000e+00 929.0
35 TraesCS1B01G260300 chr7B 87.639 631 50 17 2618 3235 345497149 345496534 0.000000e+00 708.0
36 TraesCS1B01G260300 chr7B 95.982 224 5 3 2957 3179 345496754 345496534 1.850000e-95 361.0
37 TraesCS1B01G260300 chr7B 97.902 143 3 0 5368 5510 702592032 702592174 1.500000e-61 248.0
38 TraesCS1B01G260300 chr7B 95.890 146 5 1 5368 5512 698510722 698510867 1.170000e-57 235.0
39 TraesCS1B01G260300 chr7B 80.488 164 15 3 3631 3778 23098681 23098519 7.400000e-20 110.0
40 TraesCS1B01G260300 chr7B 93.478 46 1 2 5499 5543 145547381 145547425 4.520000e-07 67.6
41 TraesCS1B01G260300 chr7B 97.368 38 0 1 5507 5543 594214544 594214581 5.840000e-06 63.9
42 TraesCS1B01G260300 chr2A 91.846 650 5 12 3173 3777 602612502 602611856 0.000000e+00 863.0
43 TraesCS1B01G260300 chr2A 90.134 598 22 22 2616 3179 602612980 602612386 0.000000e+00 743.0
44 TraesCS1B01G260300 chr2A 84.973 366 39 14 2613 2968 88726372 88726013 2.390000e-94 357.0
45 TraesCS1B01G260300 chr2A 92.188 64 1 3 3229 3288 602612502 602612439 3.470000e-13 87.9
46 TraesCS1B01G260300 chr2A 90.625 64 2 3 3060 3123 602612445 602612386 1.610000e-11 82.4
47 TraesCS1B01G260300 chr2A 97.368 38 0 1 5507 5543 677170492 677170455 5.840000e-06 63.9
48 TraesCS1B01G260300 chr6A 90.101 495 18 6 2618 3084 419488663 419488172 1.290000e-171 614.0
49 TraesCS1B01G260300 chr6A 100.000 29 0 0 6453 6481 71055467 71055495 4.000000e-03 54.7
50 TraesCS1B01G260300 chr3A 92.784 388 16 7 2619 2996 108910361 108910746 1.020000e-152 551.0
51 TraesCS1B01G260300 chr3A 95.455 66 3 0 4683 4748 733311401 733311466 9.570000e-19 106.0
52 TraesCS1B01G260300 chr5A 90.452 398 19 3 2618 2996 598302212 598302609 2.250000e-139 507.0
53 TraesCS1B01G260300 chr5A 90.511 274 23 3 2614 2885 649232368 649232640 6.650000e-95 359.0
54 TraesCS1B01G260300 chr5A 96.053 152 6 0 5365 5516 382843809 382843960 1.500000e-61 248.0
55 TraesCS1B01G260300 chr5A 93.939 66 4 0 4683 4748 1817352 1817287 4.450000e-17 100.0
56 TraesCS1B01G260300 chr5A 77.206 136 24 7 6443 6572 549941633 549941499 9.710000e-09 73.1
57 TraesCS1B01G260300 chr2B 89.071 366 25 10 2611 2968 439353763 439354121 2.310000e-119 440.0
58 TraesCS1B01G260300 chr2B 94.444 144 7 1 5370 5512 641175540 641175397 3.280000e-53 220.0
59 TraesCS1B01G260300 chr2B 82.407 108 13 4 6474 6575 36257471 36257364 9.640000e-14 89.8
60 TraesCS1B01G260300 chr6B 88.674 362 26 10 2615 2968 132422899 132423253 1.800000e-115 427.0
61 TraesCS1B01G260300 chr6B 97.368 38 0 1 5508 5544 2069638 2069601 5.840000e-06 63.9
62 TraesCS1B01G260300 chr6B 97.368 38 0 1 5507 5543 70877381 70877418 5.840000e-06 63.9
63 TraesCS1B01G260300 chr6B 100.000 29 0 0 4679 4707 65657806 65657778 4.000000e-03 54.7
64 TraesCS1B01G260300 chr4B 91.385 325 6 9 3470 3772 223847029 223847353 6.470000e-115 425.0
65 TraesCS1B01G260300 chr4B 88.636 264 28 2 2610 2873 529349290 529349551 3.140000e-83 320.0
66 TraesCS1B01G260300 chr4B 86.038 265 30 6 3512 3771 209000903 209000641 1.920000e-70 278.0
67 TraesCS1B01G260300 chr4B 100.000 64 0 0 3470 3533 209000972 209000909 1.230000e-22 119.0
68 TraesCS1B01G260300 chr4B 91.463 82 7 0 3221 3302 223846844 223846925 5.720000e-21 113.0
69 TraesCS1B01G260300 chr4B 97.436 39 1 0 4587 4625 219274357 219274319 4.520000e-07 67.6
70 TraesCS1B01G260300 chr5D 88.365 318 28 8 2612 2922 382873347 382873662 2.380000e-99 374.0
71 TraesCS1B01G260300 chr5D 95.041 121 6 0 4587 4707 165177779 165177659 2.570000e-44 191.0
72 TraesCS1B01G260300 chr7D 87.302 315 30 9 2616 2922 116236251 116236563 1.110000e-92 351.0
73 TraesCS1B01G260300 chr5B 97.945 146 3 0 5367 5512 445449139 445448994 3.230000e-63 254.0
74 TraesCS1B01G260300 chr5B 80.128 156 15 3 3633 3772 254346043 254346198 1.240000e-17 102.0
75 TraesCS1B01G260300 chr5B 91.803 61 5 0 4652 4712 37737942 37737882 1.250000e-12 86.1
76 TraesCS1B01G260300 chr5B 97.368 38 0 1 5507 5543 281583068 281583031 5.840000e-06 63.9
77 TraesCS1B01G260300 chr5B 94.872 39 2 0 4587 4625 37321423 37321461 2.100000e-05 62.1
78 TraesCS1B01G260300 chrUn 85.161 155 19 4 5368 5520 302944705 302944553 9.370000e-34 156.0
79 TraesCS1B01G260300 chrUn 85.161 155 19 4 5368 5520 322239453 322239605 9.370000e-34 156.0
80 TraesCS1B01G260300 chr3B 89.256 121 13 0 4587 4707 321023842 321023722 1.210000e-32 152.0
81 TraesCS1B01G260300 chr3B 92.000 50 3 1 3723 3772 475650160 475650208 1.260000e-07 69.4
82 TraesCS1B01G260300 chr6D 82.979 141 15 6 6435 6567 467976875 467976736 1.230000e-22 119.0
83 TraesCS1B01G260300 chr7A 81.295 139 23 3 3632 3769 33760397 33760533 7.400000e-20 110.0
84 TraesCS1B01G260300 chr7A 81.343 134 19 3 6435 6564 228264166 228264297 3.440000e-18 104.0
85 TraesCS1B01G260300 chr7A 80.435 138 19 6 6435 6572 682176715 682176844 1.600000e-16 99.0
86 TraesCS1B01G260300 chr2D 88.312 77 9 0 4932 5008 468131503 468131579 7.450000e-15 93.5
87 TraesCS1B01G260300 chr3D 97.436 39 1 0 4587 4625 160295466 160295428 4.520000e-07 67.6
88 TraesCS1B01G260300 chr3D 100.000 28 0 0 1527 1554 445502644 445502617 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G260300 chr1B 457750186 457757161 6975 False 2004.114286 12883 95.765714 1 6976 7 chr1B.!!$F3 6975
1 TraesCS1B01G260300 chr1A 441750988 441757686 6698 False 763.125000 1912 88.258000 1 6960 8 chr1A.!!$F1 6959
2 TraesCS1B01G260300 chr1A 449553505 449554595 1090 False 638.633333 1000 93.732667 2618 3776 3 chr1A.!!$F2 1158
3 TraesCS1B01G260300 chr1D 341837274 341842262 4988 True 742.875000 1644 89.486375 149 6334 8 chr1D.!!$R1 6185
4 TraesCS1B01G260300 chr7B 345496010 345497149 1139 True 666.000000 929 92.408333 2618 3784 3 chr7B.!!$R2 1166
5 TraesCS1B01G260300 chr2A 602611856 602612980 1124 True 444.075000 863 91.198250 2616 3777 4 chr2A.!!$R3 1161
6 TraesCS1B01G260300 chr4B 223846844 223847353 509 False 269.000000 425 91.424000 3221 3772 2 chr4B.!!$F2 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.250901 AACTCGCAGCCCAATTCACT 60.251 50.000 0.00 0.00 0.00 3.41 F
1413 1555 0.108138 AATGCAGCAGTACTCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79 F
1743 1891 0.031857 TTCCGCGTCGAGGTACAAAA 59.968 50.000 14.98 0.00 0.00 2.44 F
2439 2709 0.179100 TGACTCTGCTAGCAATCCGC 60.179 55.000 19.86 7.97 42.91 5.54 F
2586 2867 1.377202 GCCTTGTCTCATCGGCCAA 60.377 57.895 2.24 0.00 36.56 4.52 F
4174 4714 0.242017 GCCGCAATGTTTCTCTGCTT 59.758 50.000 0.00 0.00 33.82 3.91 F
4229 4770 0.031585 TCCACGTGTGTGTCTGTAGC 59.968 55.000 15.65 0.00 44.92 3.58 F
4231 4772 0.032130 CACGTGTGTGTCTGTAGCCT 59.968 55.000 7.58 0.00 41.34 4.58 F
4233 4774 0.032130 CGTGTGTGTCTGTAGCCTGT 59.968 55.000 0.00 0.00 0.00 4.00 F
4880 5675 0.172578 CATGGCTGATGGTGCTGTTG 59.827 55.000 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1614 0.028902 GTGCCACACCGTCAAAAGTC 59.971 55.0 0.00 0.00 0.00 3.01 R
2439 2709 0.030908 GAGCCAGGACGATAAGACCG 59.969 60.0 0.00 0.00 39.69 4.79 R
2546 2827 0.035630 CAAGAGAAGGTCCCAGGCTG 60.036 60.0 7.75 7.75 0.00 4.85 R
3809 4272 0.175760 ATTCTACACGGCGCAGTGAT 59.824 50.0 40.38 27.38 44.43 3.06 R
4223 4764 0.395311 TCGACCCCTACAGGCTACAG 60.395 60.0 0.00 0.00 0.00 2.74 R
5246 6561 0.028770 CCGTTGAAAGCAAGCGAACA 59.971 50.0 0.00 0.00 34.01 3.18 R
5466 6790 0.178068 GGCTCTGCAGAATTACGGGA 59.822 55.0 18.85 0.00 0.00 5.14 R
5501 6825 0.331954 TCGACTGAGACTTAGGGCCT 59.668 55.0 12.58 12.58 0.00 5.19 R
5502 6826 0.456628 GTCGACTGAGACTTAGGGCC 59.543 60.0 8.70 0.00 38.09 5.80 R
6786 8463 0.031314 TGCTACTGCTGCTAGCGATC 59.969 55.0 10.77 1.91 46.26 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.861837 GGATCTACGCAGCAAATCGG 59.138 55.000 0.00 0.00 0.00 4.18
55 56 3.376234 CCATGCGTTCATTCATCTCTGTT 59.624 43.478 0.00 0.00 0.00 3.16
65 66 2.457598 TCATCTCTGTTAACCTCGGCT 58.542 47.619 2.48 0.00 0.00 5.52
67 68 0.895530 TCTCTGTTAACCTCGGCTGG 59.104 55.000 2.48 0.00 0.00 4.85
68 69 0.741221 CTCTGTTAACCTCGGCTGGC 60.741 60.000 2.48 0.00 0.00 4.85
73 74 1.614241 TTAACCTCGGCTGGCTCTCC 61.614 60.000 0.00 0.00 0.00 3.71
76 77 2.739996 CCTCGGCTGGCTCTCCAAT 61.740 63.158 0.00 0.00 42.91 3.16
97 98 2.319096 CGCGGGTAAAACGAGCCAA 61.319 57.895 0.00 0.00 36.76 4.52
115 116 0.250901 AACTCGCAGCCCAATTCACT 60.251 50.000 0.00 0.00 0.00 3.41
121 123 1.474077 GCAGCCCAATTCACTTCGATT 59.526 47.619 0.00 0.00 0.00 3.34
145 150 4.322804 CGACGTGTAATAAACCTCTGACAC 59.677 45.833 0.00 0.00 35.07 3.67
147 152 3.611113 CGTGTAATAAACCTCTGACACCG 59.389 47.826 0.00 0.00 34.97 4.94
160 165 4.662961 CACCGCGACCAGCTCACA 62.663 66.667 8.23 0.00 45.59 3.58
167 172 1.229975 CGACCAGCTCACATGTGCAA 61.230 55.000 21.38 3.89 37.04 4.08
212 223 0.381089 CGTACGACCTCCTGACCATC 59.619 60.000 10.44 0.00 0.00 3.51
276 287 1.962306 TTAAGCGCGCCGTTCCTTT 60.962 52.632 30.33 16.27 0.00 3.11
277 288 0.669932 TTAAGCGCGCCGTTCCTTTA 60.670 50.000 30.33 15.12 0.00 1.85
278 289 0.460635 TAAGCGCGCCGTTCCTTTAT 60.461 50.000 30.33 0.79 0.00 1.40
384 410 1.004292 GAAGACACAACCAAACGACGG 60.004 52.381 0.00 0.00 0.00 4.79
445 472 1.089920 GGCATGTGATGTGAGGTGAC 58.910 55.000 0.00 0.00 0.00 3.67
513 540 3.088006 CTCGCGCGCATCTACTCG 61.088 66.667 32.61 12.21 0.00 4.18
563 600 0.879090 GGTGGCTTTTACCCTGTTCG 59.121 55.000 0.00 0.00 31.89 3.95
702 748 0.452122 CGCGTGAATTCACCGGAAAC 60.452 55.000 28.40 12.72 43.66 2.78
731 777 4.753233 CAGCATGTTCTACTTCTACTGCT 58.247 43.478 0.00 0.00 39.15 4.24
837 936 4.019858 CCACACTCAGGTAGATTCAGAGA 58.980 47.826 0.00 0.00 0.00 3.10
840 939 5.866633 CACACTCAGGTAGATTCAGAGAAAC 59.133 44.000 0.00 0.00 0.00 2.78
856 955 7.918076 TCAGAGAAACAATACCCACTTCTATT 58.082 34.615 0.00 0.00 0.00 1.73
906 1024 2.581216 TAATATCTCCCTCCGCGAGT 57.419 50.000 8.23 0.00 0.00 4.18
1403 1545 0.804364 TCGCTTAACCAATGCAGCAG 59.196 50.000 0.00 0.00 32.17 4.24
1404 1546 0.523072 CGCTTAACCAATGCAGCAGT 59.477 50.000 0.00 0.00 32.17 4.40
1405 1547 1.737236 CGCTTAACCAATGCAGCAGTA 59.263 47.619 0.00 0.00 32.17 2.74
1406 1548 2.476185 CGCTTAACCAATGCAGCAGTAC 60.476 50.000 0.00 0.00 32.17 2.73
1407 1549 2.749621 GCTTAACCAATGCAGCAGTACT 59.250 45.455 0.00 0.00 32.17 2.73
1408 1550 3.181506 GCTTAACCAATGCAGCAGTACTC 60.182 47.826 0.00 0.00 32.17 2.59
1409 1551 1.826385 AACCAATGCAGCAGTACTCC 58.174 50.000 0.00 0.00 0.00 3.85
1410 1552 0.391661 ACCAATGCAGCAGTACTCCG 60.392 55.000 0.00 0.00 0.00 4.63
1411 1553 0.391661 CCAATGCAGCAGTACTCCGT 60.392 55.000 0.00 0.00 0.00 4.69
1412 1554 1.002366 CAATGCAGCAGTACTCCGTC 58.998 55.000 0.00 0.00 0.00 4.79
1413 1555 0.108138 AATGCAGCAGTACTCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
1414 1556 1.257750 ATGCAGCAGTACTCCGTCCA 61.258 55.000 0.00 0.00 0.00 4.02
1415 1557 1.446272 GCAGCAGTACTCCGTCCAC 60.446 63.158 0.00 0.00 0.00 4.02
1416 1558 1.215647 CAGCAGTACTCCGTCCACC 59.784 63.158 0.00 0.00 0.00 4.61
1417 1559 2.181021 GCAGTACTCCGTCCACCG 59.819 66.667 0.00 0.00 0.00 4.94
1418 1560 2.633509 GCAGTACTCCGTCCACCGT 61.634 63.158 0.00 0.00 33.66 4.83
1419 1561 1.211969 CAGTACTCCGTCCACCGTG 59.788 63.158 0.00 0.00 33.66 4.94
1448 1590 1.557443 CGAGGAACGTTGGTGCTGAC 61.557 60.000 5.00 0.00 37.22 3.51
1454 1602 1.227999 ACGTTGGTGCTGACGGATTG 61.228 55.000 0.90 0.00 43.16 2.67
1455 1603 1.875963 GTTGGTGCTGACGGATTGG 59.124 57.895 0.00 0.00 0.00 3.16
1456 1604 0.889186 GTTGGTGCTGACGGATTGGT 60.889 55.000 0.00 0.00 0.00 3.67
1457 1605 0.179004 TTGGTGCTGACGGATTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
1458 1606 0.179004 TGGTGCTGACGGATTGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
1459 1607 0.240945 GGTGCTGACGGATTGGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
1460 1608 0.240945 GTGCTGACGGATTGGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
1461 1609 1.212751 GCTGACGGATTGGTTTGGC 59.787 57.895 0.00 0.00 0.00 4.52
1462 1610 1.244019 GCTGACGGATTGGTTTGGCT 61.244 55.000 0.00 0.00 0.00 4.75
1463 1611 1.247567 CTGACGGATTGGTTTGGCTT 58.752 50.000 0.00 0.00 0.00 4.35
1464 1612 0.958091 TGACGGATTGGTTTGGCTTG 59.042 50.000 0.00 0.00 0.00 4.01
1465 1613 0.243636 GACGGATTGGTTTGGCTTGG 59.756 55.000 0.00 0.00 0.00 3.61
1466 1614 1.184970 ACGGATTGGTTTGGCTTGGG 61.185 55.000 0.00 0.00 0.00 4.12
1467 1615 0.897863 CGGATTGGTTTGGCTTGGGA 60.898 55.000 0.00 0.00 0.00 4.37
1468 1616 0.608130 GGATTGGTTTGGCTTGGGAC 59.392 55.000 0.00 0.00 0.00 4.46
1469 1617 1.632589 GATTGGTTTGGCTTGGGACT 58.367 50.000 0.00 0.00 0.00 3.85
1470 1618 1.970640 GATTGGTTTGGCTTGGGACTT 59.029 47.619 0.00 0.00 0.00 3.01
1471 1619 1.872773 TTGGTTTGGCTTGGGACTTT 58.127 45.000 0.00 0.00 0.00 2.66
1472 1620 1.872773 TGGTTTGGCTTGGGACTTTT 58.127 45.000 0.00 0.00 0.00 2.27
1473 1621 1.484240 TGGTTTGGCTTGGGACTTTTG 59.516 47.619 0.00 0.00 0.00 2.44
1474 1622 1.760029 GGTTTGGCTTGGGACTTTTGA 59.240 47.619 0.00 0.00 0.00 2.69
1475 1623 2.483013 GGTTTGGCTTGGGACTTTTGAC 60.483 50.000 0.00 0.00 0.00 3.18
1739 1887 1.226239 GAGTTCCGCGTCGAGGTAC 60.226 63.158 15.30 15.30 0.00 3.34
1740 1888 1.915614 GAGTTCCGCGTCGAGGTACA 61.916 60.000 22.75 4.27 32.37 2.90
1741 1889 1.081242 GTTCCGCGTCGAGGTACAA 60.081 57.895 17.57 2.09 0.00 2.41
1742 1890 0.664166 GTTCCGCGTCGAGGTACAAA 60.664 55.000 17.57 1.75 0.00 2.83
1743 1891 0.031857 TTCCGCGTCGAGGTACAAAA 59.968 50.000 14.98 0.00 0.00 2.44
1744 1892 0.244450 TCCGCGTCGAGGTACAAAAT 59.756 50.000 14.98 0.00 0.00 1.82
1745 1893 0.643820 CCGCGTCGAGGTACAAAATC 59.356 55.000 6.88 0.00 0.00 2.17
1746 1894 1.342555 CGCGTCGAGGTACAAAATCA 58.657 50.000 7.01 0.00 0.00 2.57
1747 1895 1.320555 CGCGTCGAGGTACAAAATCAG 59.679 52.381 7.01 0.00 0.00 2.90
1748 1896 1.060698 GCGTCGAGGTACAAAATCAGC 59.939 52.381 7.01 0.00 0.00 4.26
1749 1897 2.333926 CGTCGAGGTACAAAATCAGCA 58.666 47.619 0.00 0.00 0.00 4.41
1750 1898 2.734606 CGTCGAGGTACAAAATCAGCAA 59.265 45.455 0.00 0.00 0.00 3.91
1751 1899 3.423123 CGTCGAGGTACAAAATCAGCAAC 60.423 47.826 0.00 0.00 0.00 4.17
1752 1900 2.734606 TCGAGGTACAAAATCAGCAACG 59.265 45.455 0.00 0.00 0.00 4.10
1753 1901 2.724839 CGAGGTACAAAATCAGCAACGC 60.725 50.000 0.00 0.00 0.00 4.84
1754 1902 2.225491 GAGGTACAAAATCAGCAACGCA 59.775 45.455 0.00 0.00 0.00 5.24
1755 1903 2.031157 AGGTACAAAATCAGCAACGCAC 60.031 45.455 0.00 0.00 0.00 5.34
1756 1904 2.315901 GTACAAAATCAGCAACGCACC 58.684 47.619 0.00 0.00 0.00 5.01
1757 1905 1.032014 ACAAAATCAGCAACGCACCT 58.968 45.000 0.00 0.00 0.00 4.00
1758 1906 1.408702 ACAAAATCAGCAACGCACCTT 59.591 42.857 0.00 0.00 0.00 3.50
1759 1907 2.621055 ACAAAATCAGCAACGCACCTTA 59.379 40.909 0.00 0.00 0.00 2.69
1760 1908 3.236816 CAAAATCAGCAACGCACCTTAG 58.763 45.455 0.00 0.00 0.00 2.18
1761 1909 2.185004 AATCAGCAACGCACCTTAGT 57.815 45.000 0.00 0.00 0.00 2.24
1762 1910 3.328382 AATCAGCAACGCACCTTAGTA 57.672 42.857 0.00 0.00 0.00 1.82
1763 1911 2.074547 TCAGCAACGCACCTTAGTAC 57.925 50.000 0.00 0.00 0.00 2.73
1764 1912 0.713883 CAGCAACGCACCTTAGTACG 59.286 55.000 0.00 0.00 38.77 3.67
1766 1914 1.541147 AGCAACGCACCTTAGTACGTA 59.459 47.619 0.00 0.00 45.15 3.57
1767 1915 1.916000 GCAACGCACCTTAGTACGTAG 59.084 52.381 0.00 0.00 45.15 3.51
1768 1916 2.414559 GCAACGCACCTTAGTACGTAGA 60.415 50.000 0.00 0.00 45.15 2.59
1769 1917 3.825308 CAACGCACCTTAGTACGTAGAA 58.175 45.455 0.00 0.00 45.15 2.10
1770 1918 4.418392 CAACGCACCTTAGTACGTAGAAT 58.582 43.478 0.00 0.00 45.15 2.40
1771 1919 4.708726 ACGCACCTTAGTACGTAGAATT 57.291 40.909 0.00 0.00 44.09 2.17
1772 1920 5.818136 ACGCACCTTAGTACGTAGAATTA 57.182 39.130 0.00 0.00 44.09 1.40
1773 1921 6.194796 ACGCACCTTAGTACGTAGAATTAA 57.805 37.500 0.00 0.00 44.09 1.40
1774 1922 6.799512 ACGCACCTTAGTACGTAGAATTAAT 58.200 36.000 0.00 0.00 44.09 1.40
1775 1923 7.260603 ACGCACCTTAGTACGTAGAATTAATT 58.739 34.615 0.00 0.00 44.09 1.40
1776 1924 8.405531 ACGCACCTTAGTACGTAGAATTAATTA 58.594 33.333 0.00 0.00 44.09 1.40
1777 1925 9.236691 CGCACCTTAGTACGTAGAATTAATTAA 57.763 33.333 0.00 0.00 0.00 1.40
1792 1940 7.816995 AGAATTAATTAATTTGTTCAAGCCGCA 59.183 29.630 21.39 0.00 36.13 5.69
1826 1979 2.652496 GATCGGCTCACGTCTCGC 60.652 66.667 0.00 0.00 44.69 5.03
1842 2009 2.819595 GCCGATGTCCATGTGCGT 60.820 61.111 0.00 0.00 0.00 5.24
1844 2011 2.400798 CGATGTCCATGTGCGTGC 59.599 61.111 0.00 0.00 0.00 5.34
1883 2057 1.495951 GCTTCGCGTACCAACCTTG 59.504 57.895 5.77 0.00 0.00 3.61
1897 2072 4.576879 CCAACCTTGGTCTAGTTTCTACC 58.423 47.826 0.00 0.00 43.43 3.18
1907 2082 4.567159 GTCTAGTTTCTACCCGCAATTGAG 59.433 45.833 10.34 5.80 0.00 3.02
1934 2118 2.686835 GCAGCAGGGAGAGGGAGT 60.687 66.667 0.00 0.00 0.00 3.85
1950 2149 1.223187 GAGTGGTACGTGGTTGTTGG 58.777 55.000 0.00 0.00 0.00 3.77
1966 2165 1.393196 GTTGGTGCTGTTTGTTGTTGC 59.607 47.619 0.00 0.00 0.00 4.17
2001 2200 3.272334 GACGGATCATGCACGGGC 61.272 66.667 0.34 0.34 41.68 6.13
2003 2202 4.552365 CGGATCATGCACGGGCCT 62.552 66.667 7.46 0.00 40.13 5.19
2004 2203 2.592861 GGATCATGCACGGGCCTC 60.593 66.667 7.46 0.00 40.13 4.70
2005 2204 2.507944 GATCATGCACGGGCCTCT 59.492 61.111 7.46 0.00 40.13 3.69
2006 2205 1.596477 GATCATGCACGGGCCTCTC 60.596 63.158 7.46 0.00 40.13 3.20
2007 2206 3.112205 ATCATGCACGGGCCTCTCC 62.112 63.158 7.46 0.00 40.13 3.71
2024 2223 3.719497 CGGGCCGGGGAGGTTTTA 61.719 66.667 20.56 0.00 43.70 1.52
2025 2224 2.274432 GGGCCGGGGAGGTTTTAG 59.726 66.667 2.18 0.00 43.70 1.85
2026 2225 2.303282 GGGCCGGGGAGGTTTTAGA 61.303 63.158 2.18 0.00 43.70 2.10
2031 2230 0.323629 CGGGGAGGTTTTAGAGCACA 59.676 55.000 0.00 0.00 0.00 4.57
2039 2238 2.796593 GGTTTTAGAGCACACGTACGTT 59.203 45.455 20.23 3.62 0.00 3.99
2043 2242 1.242076 AGAGCACACGTACGTTACCT 58.758 50.000 20.23 14.25 0.00 3.08
2051 2250 0.459063 CGTACGTTACCTGGGAAGGC 60.459 60.000 11.19 0.00 0.00 4.35
2053 2252 1.208776 GTACGTTACCTGGGAAGGCAT 59.791 52.381 11.19 0.00 0.00 4.40
2054 2253 1.575419 ACGTTACCTGGGAAGGCATA 58.425 50.000 11.19 0.00 0.00 3.14
2056 2255 1.202651 CGTTACCTGGGAAGGCATAGG 60.203 57.143 0.00 0.00 36.39 2.57
2057 2256 0.843984 TTACCTGGGAAGGCATAGGC 59.156 55.000 0.00 0.00 40.13 3.93
2136 2347 2.607892 GGCGTTGGTGACAGACTGC 61.608 63.158 1.25 0.00 44.54 4.40
2154 2365 5.031066 ACTGCTGGTGTTGTCTTTAGTTA 57.969 39.130 0.00 0.00 0.00 2.24
2181 2392 0.179124 GAGAGAGACGCATCACCACC 60.179 60.000 0.00 0.00 0.00 4.61
2182 2393 0.613292 AGAGAGACGCATCACCACCT 60.613 55.000 0.00 0.00 0.00 4.00
2183 2394 0.459237 GAGAGACGCATCACCACCTG 60.459 60.000 0.00 0.00 0.00 4.00
2250 2466 1.366111 GAAACCGCGGCAGAATAGCA 61.366 55.000 28.58 0.00 35.83 3.49
2263 2479 1.622607 AATAGCAGTGCCGGTGCCTA 61.623 55.000 12.58 4.92 42.24 3.93
2320 2539 3.361977 CGCCACGGGTGAAAAGGG 61.362 66.667 0.00 0.00 34.74 3.95
2336 2555 4.748144 GGCAGGGTCCCTTGCCTG 62.748 72.222 30.00 14.68 41.35 4.85
2361 2580 2.121538 CGATCGAGCTGGAGGGTCA 61.122 63.158 10.26 0.00 42.06 4.02
2387 2606 2.203209 CCTACCGCCCTTGCCATC 60.203 66.667 0.00 0.00 0.00 3.51
2435 2705 2.755655 AGTACGTGACTCTGCTAGCAAT 59.244 45.455 19.86 7.21 29.95 3.56
2439 2709 0.179100 TGACTCTGCTAGCAATCCGC 60.179 55.000 19.86 7.97 42.91 5.54
2528 2809 7.766278 ACATCACAGGCTAATCAAGTTAGTTAG 59.234 37.037 0.00 3.30 41.55 2.34
2529 2810 7.241042 TCACAGGCTAATCAAGTTAGTTAGT 57.759 36.000 0.00 0.00 41.55 2.24
2530 2811 7.676947 TCACAGGCTAATCAAGTTAGTTAGTT 58.323 34.615 0.00 0.00 41.55 2.24
2531 2812 8.809066 TCACAGGCTAATCAAGTTAGTTAGTTA 58.191 33.333 0.00 0.00 41.55 2.24
2549 2830 9.952188 AGTTAGTTAACTTCTGAAAAATTCAGC 57.048 29.630 14.49 0.00 45.39 4.26
2557 2838 2.247358 TGAAAAATTCAGCCTGGGACC 58.753 47.619 0.00 0.00 34.08 4.46
2558 2839 2.158325 TGAAAAATTCAGCCTGGGACCT 60.158 45.455 0.00 0.00 34.08 3.85
2586 2867 1.377202 GCCTTGTCTCATCGGCCAA 60.377 57.895 2.24 0.00 36.56 4.52
2659 2940 5.474532 CAGATTGTGGAGAATTTTGGTCTGA 59.525 40.000 0.00 0.00 33.13 3.27
2668 2949 7.287466 TGGAGAATTTTGGTCTGAAAAATCTGA 59.713 33.333 0.00 0.00 35.92 3.27
2843 3124 4.041691 CCCTATCCCATGGAGAAATTACGT 59.958 45.833 15.22 0.00 34.05 3.57
3009 3374 2.203771 CGCCTTATCTCCCTCCGCT 61.204 63.158 0.00 0.00 0.00 5.52
3172 3537 4.883354 CCAGCCCCGCCATTCCTC 62.883 72.222 0.00 0.00 0.00 3.71
3173 3538 4.113815 CAGCCCCGCCATTCCTCA 62.114 66.667 0.00 0.00 0.00 3.86
3174 3539 4.115199 AGCCCCGCCATTCCTCAC 62.115 66.667 0.00 0.00 0.00 3.51
3176 3541 3.781307 CCCCGCCATTCCTCACGA 61.781 66.667 0.00 0.00 0.00 4.35
3177 3542 2.511600 CCCGCCATTCCTCACGAC 60.512 66.667 0.00 0.00 0.00 4.34
3178 3543 2.885644 CCGCCATTCCTCACGACG 60.886 66.667 0.00 0.00 0.00 5.12
3179 3544 2.885644 CGCCATTCCTCACGACGG 60.886 66.667 0.00 0.00 0.00 4.79
3180 3545 3.195698 GCCATTCCTCACGACGGC 61.196 66.667 0.00 0.00 33.31 5.68
3181 3546 2.511600 CCATTCCTCACGACGGCC 60.512 66.667 0.00 0.00 0.00 6.13
3182 3547 2.511600 CATTCCTCACGACGGCCC 60.512 66.667 0.00 0.00 0.00 5.80
3183 3548 3.000819 ATTCCTCACGACGGCCCA 61.001 61.111 0.00 0.00 0.00 5.36
3184 3549 3.310860 ATTCCTCACGACGGCCCAC 62.311 63.158 0.00 0.00 0.00 4.61
3187 3552 4.436998 CTCACGACGGCCCACCTC 62.437 72.222 0.00 0.00 0.00 3.85
3243 3608 4.436998 CTCACGACGGCCCACCTC 62.437 72.222 0.00 0.00 0.00 3.85
3503 3923 9.349713 GAATAAATGGTACTGGTAATGGATTGA 57.650 33.333 0.00 0.00 0.00 2.57
3726 4189 6.183360 CGACAGTAGATTCTGCGAGAATTTTT 60.183 38.462 11.18 5.43 44.41 1.94
3809 4272 1.035385 TTGGACGCTCCTATCGCAGA 61.035 55.000 5.77 0.00 38.23 4.26
3838 4302 2.544267 GCCGTGTAGAATTGACTATGCC 59.456 50.000 0.00 0.00 0.00 4.40
3869 4333 4.191544 ACATCACGTGTAGAATTGGATGG 58.808 43.478 16.51 0.00 39.91 3.51
3871 4335 5.105106 ACATCACGTGTAGAATTGGATGGTA 60.105 40.000 16.51 0.00 39.91 3.25
3873 4337 5.356426 TCACGTGTAGAATTGGATGGTATG 58.644 41.667 16.51 0.00 0.00 2.39
3879 4343 5.815222 TGTAGAATTGGATGGTATGTTGTCG 59.185 40.000 0.00 0.00 0.00 4.35
3880 4344 3.627577 AGAATTGGATGGTATGTTGTCGC 59.372 43.478 0.00 0.00 0.00 5.19
3881 4345 1.364721 TTGGATGGTATGTTGTCGCG 58.635 50.000 0.00 0.00 0.00 5.87
3882 4346 0.533032 TGGATGGTATGTTGTCGCGA 59.467 50.000 3.71 3.71 0.00 5.87
3884 4348 2.362717 TGGATGGTATGTTGTCGCGATA 59.637 45.455 14.06 6.83 0.00 2.92
3885 4349 2.987149 GGATGGTATGTTGTCGCGATAG 59.013 50.000 14.06 0.00 0.00 2.08
3908 4406 2.298163 TCTTGTGGGTCTAGTTCGTTCC 59.702 50.000 0.00 0.00 0.00 3.62
3920 4429 3.140141 CGTTCCCGGGCAATGCAT 61.140 61.111 18.49 0.00 0.00 3.96
3921 4430 2.495866 GTTCCCGGGCAATGCATG 59.504 61.111 18.49 0.00 0.00 4.06
3936 4450 4.334118 ATGTGCTGGTCTGCGGCA 62.334 61.111 1.29 1.29 35.36 5.69
3963 4477 1.895020 TTGAAGGTCCCGGATCCACG 61.895 60.000 13.41 0.00 0.00 4.94
4048 4567 0.467384 GGCCATCTTCTAGAGCAGCA 59.533 55.000 0.00 0.00 0.00 4.41
4114 4634 3.812053 ACTATCTACGTACCTGCCGTTAG 59.188 47.826 0.00 0.00 39.60 2.34
4174 4714 0.242017 GCCGCAATGTTTCTCTGCTT 59.758 50.000 0.00 0.00 33.82 3.91
4196 4736 2.095567 GCCCGATTTCATCCATGAATCG 60.096 50.000 15.74 15.74 45.30 3.34
4223 4764 0.955428 ATGGCATCCACGTGTGTGTC 60.955 55.000 15.65 14.24 44.92 3.67
4227 4768 1.604438 GCATCCACGTGTGTGTCTGTA 60.604 52.381 15.65 0.00 44.92 2.74
4228 4769 2.328473 CATCCACGTGTGTGTCTGTAG 58.672 52.381 15.65 0.00 44.92 2.74
4229 4770 0.031585 TCCACGTGTGTGTCTGTAGC 59.968 55.000 15.65 0.00 44.92 3.58
4230 4771 0.944311 CCACGTGTGTGTCTGTAGCC 60.944 60.000 15.65 0.00 44.92 3.93
4231 4772 0.032130 CACGTGTGTGTCTGTAGCCT 59.968 55.000 7.58 0.00 41.34 4.58
4232 4773 0.032130 ACGTGTGTGTCTGTAGCCTG 59.968 55.000 0.00 0.00 0.00 4.85
4233 4774 0.032130 CGTGTGTGTCTGTAGCCTGT 59.968 55.000 0.00 0.00 0.00 4.00
4235 4776 2.668556 CGTGTGTGTCTGTAGCCTGTAG 60.669 54.545 0.00 0.00 0.00 2.74
4341 5095 7.810759 GCATTAACTTTAGTTTTCCGGATTTGA 59.189 33.333 4.15 0.00 39.31 2.69
4366 5128 6.306199 TGTAACCCCATCAATAATGATCAGG 58.694 40.000 0.09 4.65 44.53 3.86
4411 5188 8.925161 ATCAATCATTTGGTTACGGTTTATTG 57.075 30.769 0.00 0.00 33.44 1.90
4780 5575 4.657824 AACGGCCAGGTCGTCACG 62.658 66.667 21.95 1.96 45.33 4.35
4832 5627 5.255596 CGCCAGAGTATGTAAACGAATTTG 58.744 41.667 0.00 0.00 0.00 2.32
4880 5675 0.172578 CATGGCTGATGGTGCTGTTG 59.827 55.000 0.00 0.00 0.00 3.33
4881 5676 1.601419 ATGGCTGATGGTGCTGTTGC 61.601 55.000 0.00 0.00 40.20 4.17
4882 5677 1.975407 GGCTGATGGTGCTGTTGCT 60.975 57.895 0.00 0.00 40.48 3.91
4883 5678 1.211969 GCTGATGGTGCTGTTGCTG 59.788 57.895 0.00 0.00 40.48 4.41
4884 5679 1.880894 CTGATGGTGCTGTTGCTGG 59.119 57.895 0.00 0.00 40.48 4.85
4885 5680 0.892358 CTGATGGTGCTGTTGCTGGT 60.892 55.000 0.00 0.00 40.48 4.00
4886 5681 0.467844 TGATGGTGCTGTTGCTGGTT 60.468 50.000 0.00 0.00 40.48 3.67
4887 5682 0.675633 GATGGTGCTGTTGCTGGTTT 59.324 50.000 0.00 0.00 40.48 3.27
5151 5957 2.031807 ACCGAGATAGATGTTCGACACG 59.968 50.000 0.00 0.00 36.49 4.49
5160 5966 1.503294 TGTTCGACACGCAGCATAAA 58.497 45.000 0.00 0.00 0.00 1.40
5212 6520 2.358267 AGTAGCGAGATTAGGACCAACG 59.642 50.000 0.00 0.00 0.00 4.10
5239 6554 0.320421 AAACATACGTGGCGCTCTGT 60.320 50.000 7.64 5.73 0.00 3.41
5240 6555 1.014044 AACATACGTGGCGCTCTGTG 61.014 55.000 7.64 1.86 0.00 3.66
5241 6556 2.167219 CATACGTGGCGCTCTGTGG 61.167 63.158 7.64 0.00 0.00 4.17
5242 6557 2.348104 ATACGTGGCGCTCTGTGGA 61.348 57.895 7.64 0.00 0.00 4.02
5243 6558 2.558554 ATACGTGGCGCTCTGTGGAC 62.559 60.000 7.64 0.00 0.00 4.02
5244 6559 4.363990 CGTGGCGCTCTGTGGACT 62.364 66.667 7.64 0.00 0.00 3.85
5245 6560 2.433318 GTGGCGCTCTGTGGACTC 60.433 66.667 7.64 0.00 0.00 3.36
5246 6561 2.601666 TGGCGCTCTGTGGACTCT 60.602 61.111 7.64 0.00 0.00 3.24
5259 6574 1.230324 GGACTCTGTTCGCTTGCTTT 58.770 50.000 0.00 0.00 0.00 3.51
5332 6648 2.361104 GGGCGCCCTGAAACATCA 60.361 61.111 38.76 0.00 0.00 3.07
5356 6680 5.163824 ACGAAATCTGCATGCCATTATATCG 60.164 40.000 16.68 18.95 0.00 2.92
5365 6689 5.407502 CATGCCATTATATCGTCGGTCTTA 58.592 41.667 0.00 0.00 0.00 2.10
5369 6693 6.207221 TGCCATTATATCGTCGGTCTTACTAA 59.793 38.462 0.00 0.00 0.00 2.24
5370 6694 6.746364 GCCATTATATCGTCGGTCTTACTAAG 59.254 42.308 0.00 0.00 0.00 2.18
5371 6695 7.249147 CCATTATATCGTCGGTCTTACTAAGG 58.751 42.308 0.00 0.00 0.00 2.69
5372 6696 6.808008 TTATATCGTCGGTCTTACTAAGGG 57.192 41.667 0.00 0.00 0.00 3.95
5373 6697 1.755179 TCGTCGGTCTTACTAAGGGG 58.245 55.000 0.00 0.00 0.00 4.79
5374 6698 0.743097 CGTCGGTCTTACTAAGGGGG 59.257 60.000 0.00 0.00 0.00 5.40
5375 6699 1.857965 GTCGGTCTTACTAAGGGGGT 58.142 55.000 0.00 0.00 0.00 4.95
5376 6700 1.479730 GTCGGTCTTACTAAGGGGGTG 59.520 57.143 0.00 0.00 0.00 4.61
5377 6701 1.077663 TCGGTCTTACTAAGGGGGTGT 59.922 52.381 0.00 0.00 0.00 4.16
5378 6702 1.904537 CGGTCTTACTAAGGGGGTGTT 59.095 52.381 0.00 0.00 0.00 3.32
5379 6703 2.093816 CGGTCTTACTAAGGGGGTGTTC 60.094 54.545 0.00 0.00 0.00 3.18
5380 6704 2.093816 GGTCTTACTAAGGGGGTGTTCG 60.094 54.545 0.00 0.00 0.00 3.95
5381 6705 2.093816 GTCTTACTAAGGGGGTGTTCGG 60.094 54.545 0.00 0.00 0.00 4.30
5382 6706 2.181975 CTTACTAAGGGGGTGTTCGGA 58.818 52.381 0.00 0.00 0.00 4.55
5383 6707 1.856629 TACTAAGGGGGTGTTCGGAG 58.143 55.000 0.00 0.00 0.00 4.63
5384 6708 0.178912 ACTAAGGGGGTGTTCGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
5385 6709 0.535797 CTAAGGGGGTGTTCGGAGTC 59.464 60.000 0.00 0.00 0.00 3.36
5386 6710 0.906282 TAAGGGGGTGTTCGGAGTCC 60.906 60.000 0.00 0.00 0.00 3.85
5387 6711 3.714001 GGGGGTGTTCGGAGTCCC 61.714 72.222 2.80 5.90 39.22 4.46
5389 6713 3.714001 GGGTGTTCGGAGTCCCCC 61.714 72.222 2.80 3.96 34.32 5.40
5429 6753 2.202810 GCTGACGGAGCTACAGGC 60.203 66.667 0.00 0.00 45.21 4.85
5443 6767 4.439968 GCTACAGGCTAAAATAACGGAGT 58.560 43.478 0.00 0.00 39.91 3.85
5444 6768 4.874396 GCTACAGGCTAAAATAACGGAGTT 59.126 41.667 0.00 0.00 46.07 3.01
5445 6769 5.220605 GCTACAGGCTAAAATAACGGAGTTG 60.221 44.000 0.00 0.00 44.69 3.16
5446 6770 8.101589 GCTACAGGCTAAAATAACGGAGTTGG 62.102 46.154 0.00 0.00 44.69 3.77
5455 6779 3.470393 ACGGAGTTGGAAGGTAGGT 57.530 52.632 0.00 0.00 37.78 3.08
5456 6780 0.974383 ACGGAGTTGGAAGGTAGGTG 59.026 55.000 0.00 0.00 37.78 4.00
5457 6781 0.391263 CGGAGTTGGAAGGTAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
5458 6782 0.984995 GGAGTTGGAAGGTAGGTGCT 59.015 55.000 0.00 0.00 0.00 4.40
5459 6783 1.066071 GGAGTTGGAAGGTAGGTGCTC 60.066 57.143 0.00 0.00 0.00 4.26
5460 6784 0.984995 AGTTGGAAGGTAGGTGCTCC 59.015 55.000 0.00 0.00 0.00 4.70
5461 6785 0.391263 GTTGGAAGGTAGGTGCTCCG 60.391 60.000 0.00 0.00 39.05 4.63
5462 6786 2.180159 TTGGAAGGTAGGTGCTCCGC 62.180 60.000 0.00 0.00 39.05 5.54
5463 6787 2.656069 GGAAGGTAGGTGCTCCGCA 61.656 63.158 0.00 0.00 39.05 5.69
5464 6788 1.153549 GAAGGTAGGTGCTCCGCAG 60.154 63.158 0.00 0.00 40.08 5.18
5465 6789 1.605058 GAAGGTAGGTGCTCCGCAGA 61.605 60.000 0.00 0.00 40.08 4.26
5466 6790 0.978146 AAGGTAGGTGCTCCGCAGAT 60.978 55.000 0.00 0.00 40.08 2.90
5467 6791 1.068250 GGTAGGTGCTCCGCAGATC 59.932 63.158 0.00 0.00 40.08 2.75
5468 6792 1.068250 GTAGGTGCTCCGCAGATCC 59.932 63.158 0.00 0.00 40.08 3.36
5469 6793 2.134287 TAGGTGCTCCGCAGATCCC 61.134 63.158 0.00 0.00 40.08 3.85
5470 6794 4.899239 GGTGCTCCGCAGATCCCG 62.899 72.222 0.00 0.00 40.08 5.14
5471 6795 4.148825 GTGCTCCGCAGATCCCGT 62.149 66.667 3.17 0.00 40.08 5.28
5472 6796 2.441348 TGCTCCGCAGATCCCGTA 60.441 61.111 3.17 0.00 33.32 4.02
5473 6797 2.055633 TGCTCCGCAGATCCCGTAA 61.056 57.895 3.17 0.00 33.32 3.18
5474 6798 1.367840 GCTCCGCAGATCCCGTAAT 59.632 57.895 3.17 0.00 0.00 1.89
5475 6799 0.249911 GCTCCGCAGATCCCGTAATT 60.250 55.000 3.17 0.00 0.00 1.40
5476 6800 1.784525 CTCCGCAGATCCCGTAATTC 58.215 55.000 3.17 0.00 0.00 2.17
5477 6801 1.341531 CTCCGCAGATCCCGTAATTCT 59.658 52.381 3.17 0.00 0.00 2.40
5478 6802 1.068588 TCCGCAGATCCCGTAATTCTG 59.931 52.381 3.17 0.00 39.87 3.02
5482 6806 3.459232 CAGATCCCGTAATTCTGCAGA 57.541 47.619 13.74 13.74 31.35 4.26
5483 6807 3.388308 CAGATCCCGTAATTCTGCAGAG 58.612 50.000 17.43 4.64 31.35 3.35
5484 6808 2.139118 GATCCCGTAATTCTGCAGAGC 58.861 52.381 17.43 7.91 0.00 4.09
5485 6809 0.178068 TCCCGTAATTCTGCAGAGCC 59.822 55.000 17.43 5.32 0.00 4.70
5486 6810 1.154205 CCCGTAATTCTGCAGAGCCG 61.154 60.000 17.43 16.08 0.00 5.52
5487 6811 1.154205 CCGTAATTCTGCAGAGCCGG 61.154 60.000 22.36 22.36 0.00 6.13
5488 6812 1.766143 CGTAATTCTGCAGAGCCGGC 61.766 60.000 21.89 21.89 0.00 6.13
5489 6813 1.521457 TAATTCTGCAGAGCCGGCG 60.521 57.895 23.20 8.34 0.00 6.46
5490 6814 2.923426 TAATTCTGCAGAGCCGGCGG 62.923 60.000 24.35 24.35 39.01 6.13
5522 6846 1.465794 GCCCTAAGTCTCAGTCGACT 58.534 55.000 13.58 13.58 45.73 4.18
5540 6864 6.609533 GTCGACTGAGACTTTGTTATGTCTA 58.390 40.000 8.70 0.00 42.79 2.59
5549 6873 9.296400 GAGACTTTGTTATGTCTAGTTCTCATC 57.704 37.037 0.00 0.00 42.79 2.92
5550 6874 7.971168 AGACTTTGTTATGTCTAGTTCTCATCG 59.029 37.037 0.00 0.00 41.19 3.84
5551 6875 7.603651 ACTTTGTTATGTCTAGTTCTCATCGT 58.396 34.615 0.00 0.00 0.00 3.73
5560 6884 5.869888 GTCTAGTTCTCATCGTGTGGAAATT 59.130 40.000 0.00 0.00 0.00 1.82
5580 6907 9.403583 GGAAATTAATGGTAAATGACTCCTGTA 57.596 33.333 0.00 0.00 0.00 2.74
5585 6912 3.827876 TGGTAAATGACTCCTGTACGTGA 59.172 43.478 0.00 0.00 0.00 4.35
5594 6921 3.245797 CTCCTGTACGTGAGTTGTGATG 58.754 50.000 0.00 0.00 46.40 3.07
5643 6970 1.520342 GAGGCTCGTGCAGATGGTC 60.520 63.158 12.07 0.00 41.91 4.02
5728 7055 1.005804 CTCCGTGCATGATCGATCGG 61.006 60.000 20.03 16.41 39.40 4.18
5784 7118 1.348538 CTTTATCGTGGACGCGTGCA 61.349 55.000 30.21 30.21 39.60 4.57
5979 7313 2.214216 AGCAACACGTCCTAGGCCA 61.214 57.895 5.01 0.00 0.00 5.36
5992 7331 1.940883 TAGGCCACCACACGATCGTC 61.941 60.000 19.84 4.94 0.00 4.20
6025 7370 1.367659 GATTTCTCAGAGCTGCGCTT 58.632 50.000 9.73 0.00 39.88 4.68
6071 7416 1.507174 AGTAAGGCTGACGCGTCTC 59.493 57.895 36.27 26.95 36.88 3.36
6163 7552 3.983741 AGTCCTTCACTTCTTCAAGACG 58.016 45.455 0.00 0.00 33.34 4.18
6171 7560 1.599071 CTTCTTCAAGACGTGCTGCAA 59.401 47.619 2.77 0.00 0.00 4.08
6172 7561 1.882912 TCTTCAAGACGTGCTGCAAT 58.117 45.000 2.77 0.00 0.00 3.56
6173 7562 1.532437 TCTTCAAGACGTGCTGCAATG 59.468 47.619 2.77 2.29 0.00 2.82
6174 7563 0.040157 TTCAAGACGTGCTGCAATGC 60.040 50.000 2.77 0.00 0.00 3.56
6175 7564 1.165284 TCAAGACGTGCTGCAATGCA 61.165 50.000 7.99 7.99 41.05 3.96
6199 7588 1.361668 AAGCTATCGTTGCAGGTGCG 61.362 55.000 0.00 0.00 45.83 5.34
6233 7625 7.254319 CGTAGTGATTATATGTGTTTGGTCCAC 60.254 40.741 0.00 0.00 0.00 4.02
6242 7634 3.500299 TGTGTTTGGTCCACAATACATCG 59.500 43.478 10.27 0.00 39.73 3.84
6326 7718 1.172175 CCTTTTTGGGAGCTCTCAGC 58.828 55.000 17.46 0.00 42.84 4.26
6347 7739 4.065088 GCTGAGTGTTGTTTGATGGAGTA 58.935 43.478 0.00 0.00 0.00 2.59
6403 7795 2.683968 ACTGTAGTACCACATTGCACG 58.316 47.619 0.00 0.00 0.00 5.34
6404 7796 1.999735 CTGTAGTACCACATTGCACGG 59.000 52.381 0.00 0.00 0.00 4.94
6405 7797 1.345089 TGTAGTACCACATTGCACGGT 59.655 47.619 0.00 0.00 36.79 4.83
6407 7799 1.519408 AGTACCACATTGCACGGTTC 58.481 50.000 1.97 0.00 34.12 3.62
6409 7801 1.877443 GTACCACATTGCACGGTTCTT 59.123 47.619 1.97 0.00 34.12 2.52
6410 7802 2.264005 ACCACATTGCACGGTTCTTA 57.736 45.000 0.00 0.00 0.00 2.10
6411 7803 2.790433 ACCACATTGCACGGTTCTTAT 58.210 42.857 0.00 0.00 0.00 1.73
6412 7804 2.487762 ACCACATTGCACGGTTCTTATG 59.512 45.455 0.00 0.00 0.00 1.90
6413 7805 2.487762 CCACATTGCACGGTTCTTATGT 59.512 45.455 0.00 0.00 0.00 2.29
6414 7806 3.426159 CCACATTGCACGGTTCTTATGTC 60.426 47.826 0.00 0.00 0.00 3.06
6415 7807 3.436704 CACATTGCACGGTTCTTATGTCT 59.563 43.478 0.00 0.00 0.00 3.41
6416 7808 4.072131 ACATTGCACGGTTCTTATGTCTT 58.928 39.130 0.00 0.00 0.00 3.01
6417 7809 4.154195 ACATTGCACGGTTCTTATGTCTTC 59.846 41.667 0.00 0.00 0.00 2.87
6418 7810 3.678056 TGCACGGTTCTTATGTCTTCT 57.322 42.857 0.00 0.00 0.00 2.85
6419 7811 4.794278 TGCACGGTTCTTATGTCTTCTA 57.206 40.909 0.00 0.00 0.00 2.10
6420 7812 4.744570 TGCACGGTTCTTATGTCTTCTAG 58.255 43.478 0.00 0.00 0.00 2.43
6421 7813 4.461431 TGCACGGTTCTTATGTCTTCTAGA 59.539 41.667 0.00 0.00 0.00 2.43
6422 7814 4.799428 GCACGGTTCTTATGTCTTCTAGAC 59.201 45.833 0.00 0.00 45.26 2.59
6423 7815 5.341617 CACGGTTCTTATGTCTTCTAGACC 58.658 45.833 4.52 0.00 44.44 3.85
6424 7816 5.125739 CACGGTTCTTATGTCTTCTAGACCT 59.874 44.000 4.52 0.00 44.44 3.85
6425 7817 5.715753 ACGGTTCTTATGTCTTCTAGACCTT 59.284 40.000 4.52 0.00 44.44 3.50
6426 7818 6.127675 ACGGTTCTTATGTCTTCTAGACCTTC 60.128 42.308 4.52 0.00 44.44 3.46
6439 7831 2.695585 AGACCTTCTCTCTTTGGGTGT 58.304 47.619 0.00 0.00 0.00 4.16
6442 7834 1.528129 CTTCTCTCTTTGGGTGTGGC 58.472 55.000 0.00 0.00 0.00 5.01
6446 7838 0.324943 TCTCTTTGGGTGTGGCTAGC 59.675 55.000 6.04 6.04 0.00 3.42
6448 7840 0.324943 TCTTTGGGTGTGGCTAGCTC 59.675 55.000 15.72 8.97 0.00 4.09
6476 7868 6.766467 AGTCGACTGAAATTTAACCAAGTCTT 59.234 34.615 19.30 0.00 0.00 3.01
6480 7872 8.557029 CGACTGAAATTTAACCAAGTCTTAGTT 58.443 33.333 1.97 1.97 0.00 2.24
6515 7907 8.753497 AACATGTTAGAGAGAAAAGGAAAACT 57.247 30.769 9.97 0.00 0.00 2.66
6516 7908 8.159344 ACATGTTAGAGAGAAAAGGAAAACTG 57.841 34.615 0.00 0.00 0.00 3.16
6554 7946 5.860941 ATCTCAATGTAAGATCTCACGGT 57.139 39.130 0.00 0.00 0.00 4.83
6560 7952 7.145985 TCAATGTAAGATCTCACGGTTATAGC 58.854 38.462 0.00 0.00 0.00 2.97
6568 7960 4.383173 TCTCACGGTTATAGCATCGACTA 58.617 43.478 0.00 0.00 0.00 2.59
6572 7964 5.472478 TCACGGTTATAGCATCGACTAAGAT 59.528 40.000 0.00 0.00 0.00 2.40
6582 7974 5.809562 AGCATCGACTAAGATTTTCTCAGTG 59.190 40.000 0.00 0.00 0.00 3.66
6584 7976 5.977489 TCGACTAAGATTTTCTCAGTGGA 57.023 39.130 0.00 0.00 0.00 4.02
6601 7993 4.816385 CAGTGGACTGAAACTTAGCAAGAA 59.184 41.667 0.04 0.00 46.59 2.52
6609 8001 8.451908 ACTGAAACTTAGCAAGAATGTTTACT 57.548 30.769 3.37 0.00 32.01 2.24
6610 8002 9.555727 ACTGAAACTTAGCAAGAATGTTTACTA 57.444 29.630 3.37 0.00 32.01 1.82
6632 8024 8.338072 ACTAATCGGTGAGAGTATTATCGAAT 57.662 34.615 0.00 0.00 0.00 3.34
6639 8031 9.193133 CGGTGAGAGTATTATCGAATACAAAAT 57.807 33.333 9.36 0.00 46.80 1.82
6649 8041 3.621268 TCGAATACAAAATTCAGCGAGGG 59.379 43.478 0.00 0.00 0.00 4.30
6667 8059 3.690460 AGGGTGAATTGATGGACAAGAC 58.310 45.455 0.00 0.00 42.02 3.01
6677 8069 2.465860 TGGACAAGACAACCGGTATG 57.534 50.000 8.00 11.44 0.00 2.39
6684 8076 0.604243 GACAACCGGTATGCACCACA 60.604 55.000 8.00 0.00 46.14 4.17
6687 8079 1.543802 CAACCGGTATGCACCACAAAT 59.456 47.619 8.00 0.00 46.14 2.32
6711 8103 3.080300 TGATTGTTTCCGGCTATGGTT 57.920 42.857 0.00 0.00 0.00 3.67
6715 8107 2.432444 TGTTTCCGGCTATGGTTGAAG 58.568 47.619 0.00 0.00 0.00 3.02
6716 8108 2.224670 TGTTTCCGGCTATGGTTGAAGT 60.225 45.455 0.00 0.00 0.00 3.01
6717 8109 3.008157 TGTTTCCGGCTATGGTTGAAGTA 59.992 43.478 0.00 0.00 0.00 2.24
6719 8111 3.536956 TCCGGCTATGGTTGAAGTAAG 57.463 47.619 0.00 0.00 0.00 2.34
6720 8112 1.940613 CCGGCTATGGTTGAAGTAAGC 59.059 52.381 0.00 0.00 37.30 3.09
6721 8113 1.593006 CGGCTATGGTTGAAGTAAGCG 59.407 52.381 0.00 0.00 39.62 4.68
6723 8115 2.629051 GCTATGGTTGAAGTAAGCGGT 58.371 47.619 0.00 0.00 39.62 5.68
6730 8407 4.399934 TGGTTGAAGTAAGCGGTTTTCTTT 59.600 37.500 4.64 0.00 39.62 2.52
6732 8409 5.231357 GGTTGAAGTAAGCGGTTTTCTTTTG 59.769 40.000 4.64 0.00 0.00 2.44
6741 8418 3.791353 GCGGTTTTCTTTTGTGTCTTGAG 59.209 43.478 0.00 0.00 0.00 3.02
6752 8429 8.506437 TCTTTTGTGTCTTGAGTGCATAAATAG 58.494 33.333 0.00 0.00 0.00 1.73
6759 8436 7.093509 TGTCTTGAGTGCATAAATAGTACTCCA 60.094 37.037 0.00 0.00 44.75 3.86
6762 8439 7.360113 TGAGTGCATAAATAGTACTCCATCA 57.640 36.000 0.00 0.00 44.75 3.07
6765 8442 8.478775 AGTGCATAAATAGTACTCCATCAGTA 57.521 34.615 0.00 0.00 36.43 2.74
6766 8443 8.924303 AGTGCATAAATAGTACTCCATCAGTAA 58.076 33.333 0.00 0.00 39.44 2.24
6767 8444 9.542462 GTGCATAAATAGTACTCCATCAGTAAA 57.458 33.333 0.00 0.00 39.44 2.01
6801 8579 3.181471 ACATTTAGATCGCTAGCAGCAGT 60.181 43.478 16.45 0.00 42.58 4.40
6813 8591 2.620562 CAGCAGTAGCAGCAACACA 58.379 52.632 0.00 0.00 45.49 3.72
6846 8624 1.398960 GCAGCTAGCAACACGTTGAAG 60.399 52.381 18.83 10.40 42.93 3.02
6850 8628 2.736721 GCTAGCAACACGTTGAAGATCA 59.263 45.455 10.63 0.00 42.93 2.92
6852 8630 1.526887 AGCAACACGTTGAAGATCACG 59.473 47.619 13.97 0.00 42.93 4.35
6884 8662 1.406341 CGAGGACGGGCAGGATTTTTA 60.406 52.381 0.00 0.00 35.72 1.52
6953 8731 7.115520 CGCGTCTGAACTGAATATATCAAGATT 59.884 37.037 0.00 0.00 37.67 2.40
6954 8732 8.431593 GCGTCTGAACTGAATATATCAAGATTC 58.568 37.037 2.47 0.00 37.67 2.52
6969 8747 6.515272 TCAAGATTCTTTCTATGGGTTTGC 57.485 37.500 0.00 0.00 33.05 3.68
6970 8748 5.418840 TCAAGATTCTTTCTATGGGTTTGCC 59.581 40.000 0.00 0.00 33.05 4.52
6971 8749 4.281657 AGATTCTTTCTATGGGTTTGCCC 58.718 43.478 0.00 0.00 43.79 5.36
6972 8750 5.168691 AGATTCTTTCTATGGGTTTGCCCG 61.169 45.833 0.00 0.00 45.36 6.13
6973 8751 7.335197 AGATTCTTTCTATGGGTTTGCCCGA 62.335 44.000 0.00 0.00 45.36 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.340953 AATGAACGCATGGCCGCAC 62.341 57.895 0.00 0.00 34.26 5.34
43 44 3.452627 AGCCGAGGTTAACAGAGATGAAT 59.547 43.478 8.10 0.00 0.00 2.57
55 56 2.058595 GGAGAGCCAGCCGAGGTTA 61.059 63.158 0.00 0.00 0.00 2.85
65 66 2.496341 CGCGAGATTGGAGAGCCA 59.504 61.111 0.00 0.00 44.17 4.75
67 68 1.735376 TACCCGCGAGATTGGAGAGC 61.735 60.000 8.23 0.00 0.00 4.09
68 69 0.744874 TTACCCGCGAGATTGGAGAG 59.255 55.000 8.23 0.00 0.00 3.20
73 74 1.352114 TCGTTTTACCCGCGAGATTG 58.648 50.000 8.23 0.00 0.00 2.67
97 98 0.250901 AAGTGAATTGGGCTGCGAGT 60.251 50.000 0.00 0.00 0.00 4.18
115 116 5.401550 AGGTTTATTACACGTCGAATCGAA 58.598 37.500 7.01 0.00 37.72 3.71
121 123 4.216042 TGTCAGAGGTTTATTACACGTCGA 59.784 41.667 0.00 0.00 34.81 4.20
129 131 2.492881 TCGCGGTGTCAGAGGTTTATTA 59.507 45.455 6.13 0.00 0.00 0.98
132 134 0.038892 GTCGCGGTGTCAGAGGTTTA 60.039 55.000 6.13 0.00 0.00 2.01
133 135 1.300697 GTCGCGGTGTCAGAGGTTT 60.301 57.895 6.13 0.00 0.00 3.27
145 150 3.190849 CATGTGAGCTGGTCGCGG 61.191 66.667 6.13 6.70 45.59 6.46
147 152 3.031964 GCACATGTGAGCTGGTCGC 62.032 63.158 29.80 13.11 39.57 5.19
299 314 1.082104 GGTGGCAAAAGAAGACGCG 60.082 57.895 3.53 3.53 0.00 6.01
364 386 1.004292 CCGTCGTTTGGTTGTGTCTTC 60.004 52.381 0.00 0.00 0.00 2.87
384 410 1.395954 GTTAAATTCCCGGCTCGTGAC 59.604 52.381 0.00 0.00 0.00 3.67
422 449 2.816360 CTCACATCACATGCCGCGG 61.816 63.158 24.05 24.05 0.00 6.46
445 472 0.035343 GAAAAGGAAGAGGACCGGGG 60.035 60.000 6.32 0.00 0.00 5.73
530 563 2.719979 CACCCTACGGACGGATCG 59.280 66.667 0.00 0.00 0.00 3.69
531 564 3.126528 CCACCCTACGGACGGATC 58.873 66.667 0.00 0.00 0.00 3.36
532 565 3.152400 GCCACCCTACGGACGGAT 61.152 66.667 0.00 0.00 0.00 4.18
533 566 3.892104 AAGCCACCCTACGGACGGA 62.892 63.158 0.00 0.00 0.00 4.69
534 567 2.459202 AAAAGCCACCCTACGGACGG 62.459 60.000 0.00 0.00 0.00 4.79
535 568 0.247185 TAAAAGCCACCCTACGGACG 59.753 55.000 0.00 0.00 0.00 4.79
536 569 1.676916 GGTAAAAGCCACCCTACGGAC 60.677 57.143 0.00 0.00 0.00 4.79
544 577 0.879090 CGAACAGGGTAAAAGCCACC 59.121 55.000 0.00 0.00 38.48 4.61
702 748 3.132629 AGTAGAACATGCTGTCGTACG 57.867 47.619 9.53 9.53 0.00 3.67
703 749 4.734917 AGAAGTAGAACATGCTGTCGTAC 58.265 43.478 0.00 0.00 0.00 3.67
704 750 5.646793 AGTAGAAGTAGAACATGCTGTCGTA 59.353 40.000 0.00 0.00 0.00 3.43
705 751 3.944055 AGAAGTAGAACATGCTGTCGT 57.056 42.857 0.00 0.00 0.00 4.34
706 752 4.795795 CAGTAGAAGTAGAACATGCTGTCG 59.204 45.833 0.00 0.00 0.00 4.35
707 753 4.564769 GCAGTAGAAGTAGAACATGCTGTC 59.435 45.833 0.00 0.00 0.00 3.51
708 754 4.221703 AGCAGTAGAAGTAGAACATGCTGT 59.778 41.667 0.00 0.00 40.97 4.40
709 755 4.753233 AGCAGTAGAAGTAGAACATGCTG 58.247 43.478 0.00 0.00 40.97 4.41
710 756 4.142049 GGAGCAGTAGAAGTAGAACATGCT 60.142 45.833 0.00 0.00 44.87 3.79
711 757 4.116238 GGAGCAGTAGAAGTAGAACATGC 58.884 47.826 0.00 0.00 0.00 4.06
712 758 4.142359 ACGGAGCAGTAGAAGTAGAACATG 60.142 45.833 0.00 0.00 0.00 3.21
714 760 3.418995 ACGGAGCAGTAGAAGTAGAACA 58.581 45.455 0.00 0.00 0.00 3.18
715 761 3.181498 GGACGGAGCAGTAGAAGTAGAAC 60.181 52.174 0.00 0.00 0.00 3.01
716 762 3.015327 GGACGGAGCAGTAGAAGTAGAA 58.985 50.000 0.00 0.00 0.00 2.10
717 763 2.026542 TGGACGGAGCAGTAGAAGTAGA 60.027 50.000 0.00 0.00 0.00 2.59
718 764 2.097791 GTGGACGGAGCAGTAGAAGTAG 59.902 54.545 0.00 0.00 0.00 2.57
719 765 2.089980 GTGGACGGAGCAGTAGAAGTA 58.910 52.381 0.00 0.00 0.00 2.24
720 766 0.889306 GTGGACGGAGCAGTAGAAGT 59.111 55.000 0.00 0.00 0.00 3.01
721 767 0.888619 TGTGGACGGAGCAGTAGAAG 59.111 55.000 0.00 0.00 0.00 2.85
723 769 1.103803 GATGTGGACGGAGCAGTAGA 58.896 55.000 0.00 0.00 0.00 2.59
724 770 0.248661 CGATGTGGACGGAGCAGTAG 60.249 60.000 0.00 0.00 0.00 2.57
726 772 2.573869 CGATGTGGACGGAGCAGT 59.426 61.111 0.00 0.00 0.00 4.40
759 811 2.264794 CCTGACACAGCCCGGTAC 59.735 66.667 0.00 0.00 0.00 3.34
837 936 6.402981 AGGGAATAGAAGTGGGTATTGTTT 57.597 37.500 0.00 0.00 0.00 2.83
840 939 6.253946 AGAAGGGAATAGAAGTGGGTATTG 57.746 41.667 0.00 0.00 0.00 1.90
879 997 4.475345 CGGAGGGAGATATTATAGGAGGG 58.525 52.174 0.00 0.00 0.00 4.30
917 1035 0.597072 GGAGATAACGGAGTAGCGGG 59.403 60.000 0.00 0.00 45.00 6.13
1417 1559 2.879233 TTCCTCGAGGCCACACCAC 61.879 63.158 27.39 0.00 43.14 4.16
1418 1560 2.525629 TTCCTCGAGGCCACACCA 60.526 61.111 27.39 4.41 43.14 4.17
1419 1561 2.047179 GTTCCTCGAGGCCACACC 60.047 66.667 27.39 6.37 39.61 4.16
1448 1590 0.897863 TCCCAAGCCAAACCAATCCG 60.898 55.000 0.00 0.00 0.00 4.18
1454 1602 1.760029 TCAAAAGTCCCAAGCCAAACC 59.240 47.619 0.00 0.00 0.00 3.27
1455 1603 2.798145 CGTCAAAAGTCCCAAGCCAAAC 60.798 50.000 0.00 0.00 0.00 2.93
1456 1604 1.407258 CGTCAAAAGTCCCAAGCCAAA 59.593 47.619 0.00 0.00 0.00 3.28
1457 1605 1.028905 CGTCAAAAGTCCCAAGCCAA 58.971 50.000 0.00 0.00 0.00 4.52
1458 1606 0.821711 CCGTCAAAAGTCCCAAGCCA 60.822 55.000 0.00 0.00 0.00 4.75
1459 1607 0.822121 ACCGTCAAAAGTCCCAAGCC 60.822 55.000 0.00 0.00 0.00 4.35
1460 1608 0.310854 CACCGTCAAAAGTCCCAAGC 59.689 55.000 0.00 0.00 0.00 4.01
1461 1609 1.333619 CACACCGTCAAAAGTCCCAAG 59.666 52.381 0.00 0.00 0.00 3.61
1462 1610 1.384525 CACACCGTCAAAAGTCCCAA 58.615 50.000 0.00 0.00 0.00 4.12
1463 1611 0.464735 CCACACCGTCAAAAGTCCCA 60.465 55.000 0.00 0.00 0.00 4.37
1464 1612 1.792118 GCCACACCGTCAAAAGTCCC 61.792 60.000 0.00 0.00 0.00 4.46
1465 1613 1.098712 TGCCACACCGTCAAAAGTCC 61.099 55.000 0.00 0.00 0.00 3.85
1466 1614 0.028902 GTGCCACACCGTCAAAAGTC 59.971 55.000 0.00 0.00 0.00 3.01
1467 1615 0.678366 TGTGCCACACCGTCAAAAGT 60.678 50.000 0.00 0.00 32.73 2.66
1468 1616 0.029300 CTGTGCCACACCGTCAAAAG 59.971 55.000 0.00 0.00 32.73 2.27
1469 1617 1.380403 CCTGTGCCACACCGTCAAAA 61.380 55.000 0.00 0.00 32.73 2.44
1470 1618 1.821759 CCTGTGCCACACCGTCAAA 60.822 57.895 0.00 0.00 32.73 2.69
1471 1619 2.203139 CCTGTGCCACACCGTCAA 60.203 61.111 0.00 0.00 32.73 3.18
1472 1620 4.248842 CCCTGTGCCACACCGTCA 62.249 66.667 0.00 0.00 32.73 4.35
1473 1621 4.250305 ACCCTGTGCCACACCGTC 62.250 66.667 0.00 0.00 32.73 4.79
1474 1622 4.562425 CACCCTGTGCCACACCGT 62.562 66.667 0.00 0.00 32.73 4.83
1739 1887 2.138596 AAGGTGCGTTGCTGATTTTG 57.861 45.000 0.00 0.00 0.00 2.44
1740 1888 2.884639 ACTAAGGTGCGTTGCTGATTTT 59.115 40.909 0.00 0.00 0.00 1.82
1741 1889 2.504367 ACTAAGGTGCGTTGCTGATTT 58.496 42.857 0.00 0.00 0.00 2.17
1742 1890 2.185004 ACTAAGGTGCGTTGCTGATT 57.815 45.000 0.00 0.00 0.00 2.57
1743 1891 2.618053 GTACTAAGGTGCGTTGCTGAT 58.382 47.619 0.00 0.00 0.00 2.90
1744 1892 1.667756 CGTACTAAGGTGCGTTGCTGA 60.668 52.381 0.00 0.00 44.30 4.26
1745 1893 0.713883 CGTACTAAGGTGCGTTGCTG 59.286 55.000 0.00 0.00 44.30 4.41
1746 1894 3.117589 CGTACTAAGGTGCGTTGCT 57.882 52.632 0.00 0.00 44.30 3.91
1765 1913 9.296400 GCGGCTTGAACAAATTAATTAATTCTA 57.704 29.630 20.86 8.11 35.00 2.10
1766 1914 7.816995 TGCGGCTTGAACAAATTAATTAATTCT 59.183 29.630 20.86 10.67 35.00 2.40
1767 1915 7.897800 GTGCGGCTTGAACAAATTAATTAATTC 59.102 33.333 20.86 11.74 35.00 2.17
1768 1916 7.386299 TGTGCGGCTTGAACAAATTAATTAATT 59.614 29.630 16.15 16.15 31.23 1.40
1769 1917 6.870965 TGTGCGGCTTGAACAAATTAATTAAT 59.129 30.769 4.81 4.81 31.23 1.40
1770 1918 6.216569 TGTGCGGCTTGAACAAATTAATTAA 58.783 32.000 0.01 0.00 31.23 1.40
1771 1919 5.773575 TGTGCGGCTTGAACAAATTAATTA 58.226 33.333 0.01 0.00 31.23 1.40
1772 1920 4.626042 TGTGCGGCTTGAACAAATTAATT 58.374 34.783 0.00 0.00 31.23 1.40
1773 1921 4.250116 TGTGCGGCTTGAACAAATTAAT 57.750 36.364 0.00 0.00 31.23 1.40
1774 1922 3.717400 TGTGCGGCTTGAACAAATTAA 57.283 38.095 0.00 0.00 31.23 1.40
1775 1923 3.573598 CATGTGCGGCTTGAACAAATTA 58.426 40.909 0.00 0.00 40.39 1.40
1776 1924 2.406130 CATGTGCGGCTTGAACAAATT 58.594 42.857 0.00 0.00 40.39 1.82
1777 1925 1.936203 GCATGTGCGGCTTGAACAAAT 60.936 47.619 0.00 0.00 40.39 2.32
1778 1926 0.597118 GCATGTGCGGCTTGAACAAA 60.597 50.000 0.00 0.00 40.39 2.83
1779 1927 1.007502 GCATGTGCGGCTTGAACAA 60.008 52.632 0.00 0.00 40.39 2.83
1780 1928 1.525718 ATGCATGTGCGGCTTGAACA 61.526 50.000 0.00 0.00 45.83 3.18
1781 1929 0.451383 TATGCATGTGCGGCTTGAAC 59.549 50.000 10.16 0.00 45.83 3.18
1782 1930 1.334556 GATATGCATGTGCGGCTTGAA 59.665 47.619 10.16 0.00 45.83 2.69
1783 1931 0.946528 GATATGCATGTGCGGCTTGA 59.053 50.000 10.16 0.00 45.83 3.02
1784 1932 0.039798 GGATATGCATGTGCGGCTTG 60.040 55.000 10.16 0.00 45.83 4.01
1785 1933 0.466007 TGGATATGCATGTGCGGCTT 60.466 50.000 10.16 0.00 45.83 4.35
1792 1940 3.256558 CGATCGATGTGGATATGCATGT 58.743 45.455 10.26 1.23 0.00 3.21
1826 1979 3.092403 CACGCACATGGACATCGG 58.908 61.111 0.00 0.00 0.00 4.18
1828 1995 1.426621 CAGCACGCACATGGACATC 59.573 57.895 0.00 0.00 0.00 3.06
1866 2040 2.159181 CCAAGGTTGGTACGCGAAG 58.841 57.895 15.93 0.00 43.43 3.79
1883 2057 3.538634 ATTGCGGGTAGAAACTAGACC 57.461 47.619 0.00 0.00 0.00 3.85
1884 2058 4.501071 TCAATTGCGGGTAGAAACTAGAC 58.499 43.478 0.00 0.00 0.00 2.59
1885 2059 4.755411 CTCAATTGCGGGTAGAAACTAGA 58.245 43.478 0.00 0.00 0.00 2.43
1897 2072 2.488355 CTGCTGGCTCAATTGCGG 59.512 61.111 0.00 0.00 0.00 5.69
1934 2118 1.096386 GCACCAACAACCACGTACCA 61.096 55.000 0.00 0.00 0.00 3.25
1950 2149 0.179150 TCCGCAACAACAAACAGCAC 60.179 50.000 0.00 0.00 0.00 4.40
1986 2185 4.552365 AGGCCCGTGCATGATCCG 62.552 66.667 7.72 0.00 40.13 4.18
2007 2206 3.692370 CTAAAACCTCCCCGGCCCG 62.692 68.421 0.00 0.00 35.61 6.13
2008 2207 2.266816 CTCTAAAACCTCCCCGGCCC 62.267 65.000 0.00 0.00 35.61 5.80
2010 2209 1.451567 GCTCTAAAACCTCCCCGGC 60.452 63.158 0.00 0.00 35.61 6.13
2011 2210 0.392595 GTGCTCTAAAACCTCCCCGG 60.393 60.000 0.00 0.00 39.35 5.73
2012 2211 0.323629 TGTGCTCTAAAACCTCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
2014 2213 1.270678 ACGTGTGCTCTAAAACCTCCC 60.271 52.381 0.00 0.00 0.00 4.30
2016 2215 2.660236 CGTACGTGTGCTCTAAAACCTC 59.340 50.000 7.22 0.00 0.00 3.85
2017 2216 2.035066 ACGTACGTGTGCTCTAAAACCT 59.965 45.455 22.14 0.00 0.00 3.50
2018 2217 2.397549 ACGTACGTGTGCTCTAAAACC 58.602 47.619 22.14 0.00 0.00 3.27
2019 2218 4.143535 GGTAACGTACGTGTGCTCTAAAAC 60.144 45.833 23.57 7.28 0.00 2.43
2020 2219 3.980775 GGTAACGTACGTGTGCTCTAAAA 59.019 43.478 23.57 0.00 0.00 1.52
2021 2220 3.253188 AGGTAACGTACGTGTGCTCTAAA 59.747 43.478 23.57 0.00 46.39 1.85
2022 2221 2.813754 AGGTAACGTACGTGTGCTCTAA 59.186 45.455 23.57 0.00 46.39 2.10
2023 2222 2.160219 CAGGTAACGTACGTGTGCTCTA 59.840 50.000 23.57 6.40 46.39 2.43
2024 2223 1.068748 CAGGTAACGTACGTGTGCTCT 60.069 52.381 23.57 12.23 46.39 4.09
2025 2224 1.334054 CAGGTAACGTACGTGTGCTC 58.666 55.000 23.57 10.16 46.39 4.26
2026 2225 0.038892 CCAGGTAACGTACGTGTGCT 60.039 55.000 23.57 8.75 41.57 4.40
2031 2230 0.890683 CCTTCCCAGGTAACGTACGT 59.109 55.000 16.72 16.72 46.39 3.57
2039 2238 0.327095 TGCCTATGCCTTCCCAGGTA 60.327 55.000 0.00 0.00 43.18 3.08
2043 2242 3.060614 GCCTGCCTATGCCTTCCCA 62.061 63.158 0.00 0.00 36.33 4.37
2051 2250 2.498167 GTACTTGGATGCCTGCCTATG 58.502 52.381 0.00 0.00 0.00 2.23
2053 2252 0.464036 CGTACTTGGATGCCTGCCTA 59.536 55.000 0.00 0.00 0.00 3.93
2054 2253 1.221840 CGTACTTGGATGCCTGCCT 59.778 57.895 0.00 0.00 0.00 4.75
2056 2255 1.097547 ATGCGTACTTGGATGCCTGC 61.098 55.000 0.00 0.00 0.00 4.85
2057 2256 1.331756 GAATGCGTACTTGGATGCCTG 59.668 52.381 0.00 0.00 0.00 4.85
2136 2347 4.041198 TCCCCTAACTAAAGACAACACCAG 59.959 45.833 0.00 0.00 0.00 4.00
2154 2365 1.379309 GCGTCTCTCTCACTCCCCT 60.379 63.158 0.00 0.00 0.00 4.79
2182 2393 1.379527 CTCATTCTGCTGATGCTGCA 58.620 50.000 4.13 4.13 40.48 4.41
2183 2394 0.029567 GCTCATTCTGCTGATGCTGC 59.970 55.000 0.00 0.00 40.48 5.25
2263 2479 1.601166 GCCAAACAAACGTAGGAGGT 58.399 50.000 0.00 0.00 0.00 3.85
2320 2539 4.748144 CCAGGCAAGGGACCCTGC 62.748 72.222 15.76 18.92 45.75 4.85
2336 2555 2.279784 CAGCTCGATCGGGAAGCC 60.280 66.667 21.68 0.00 0.00 4.35
2435 2705 1.452651 AGGACGATAAGACCGCGGA 60.453 57.895 35.90 10.13 39.69 5.54
2439 2709 0.030908 GAGCCAGGACGATAAGACCG 59.969 60.000 0.00 0.00 39.69 4.79
2543 2824 0.915364 GAGAAGGTCCCAGGCTGAAT 59.085 55.000 17.94 0.00 0.00 2.57
2544 2825 0.178891 AGAGAAGGTCCCAGGCTGAA 60.179 55.000 17.94 0.00 0.00 3.02
2545 2826 0.178891 AAGAGAAGGTCCCAGGCTGA 60.179 55.000 17.94 0.00 0.00 4.26
2546 2827 0.035630 CAAGAGAAGGTCCCAGGCTG 60.036 60.000 7.75 7.75 0.00 4.85
2547 2828 0.474660 ACAAGAGAAGGTCCCAGGCT 60.475 55.000 0.00 0.00 0.00 4.58
2548 2829 1.208293 CTACAAGAGAAGGTCCCAGGC 59.792 57.143 0.00 0.00 0.00 4.85
2549 2830 1.208293 GCTACAAGAGAAGGTCCCAGG 59.792 57.143 0.00 0.00 0.00 4.45
2551 2832 1.203313 AGGCTACAAGAGAAGGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
2552 2833 1.574263 AGGCTACAAGAGAAGGTCCC 58.426 55.000 0.00 0.00 0.00 4.46
2553 2834 2.303311 ACAAGGCTACAAGAGAAGGTCC 59.697 50.000 0.00 0.00 0.00 4.46
2554 2835 3.259625 AGACAAGGCTACAAGAGAAGGTC 59.740 47.826 0.00 0.00 0.00 3.85
2555 2836 3.243724 AGACAAGGCTACAAGAGAAGGT 58.756 45.455 0.00 0.00 0.00 3.50
2556 2837 3.259374 TGAGACAAGGCTACAAGAGAAGG 59.741 47.826 0.00 0.00 0.00 3.46
2557 2838 4.527509 TGAGACAAGGCTACAAGAGAAG 57.472 45.455 0.00 0.00 0.00 2.85
2558 2839 4.380973 CGATGAGACAAGGCTACAAGAGAA 60.381 45.833 0.00 0.00 0.00 2.87
2659 2940 5.979517 CGAGTTCTTTTGGCTTCAGATTTTT 59.020 36.000 0.00 0.00 0.00 1.94
2668 2949 4.157840 AGTCAAAACGAGTTCTTTTGGCTT 59.842 37.500 8.88 0.00 46.51 4.35
2843 3124 0.913934 TGGGCTAGTGGCATTCTGGA 60.914 55.000 0.00 0.00 44.01 3.86
3009 3374 1.925455 CAGGGAAGGAAGAGGGGCA 60.925 63.158 0.00 0.00 0.00 5.36
3165 3530 2.511600 GGGCCGTCGTGAGGAATG 60.512 66.667 0.00 0.00 0.00 2.67
3166 3531 3.000819 TGGGCCGTCGTGAGGAAT 61.001 61.111 0.00 0.00 0.00 3.01
3167 3532 3.998672 GTGGGCCGTCGTGAGGAA 61.999 66.667 0.00 0.00 0.00 3.36
3170 3535 4.436998 GAGGTGGGCCGTCGTGAG 62.437 72.222 0.00 0.00 40.50 3.51
3211 3576 4.883354 GAGGAATGGCGGGGCTGG 62.883 72.222 0.00 0.00 0.00 4.85
3212 3577 4.113815 TGAGGAATGGCGGGGCTG 62.114 66.667 0.00 0.00 0.00 4.85
3213 3578 4.115199 GTGAGGAATGGCGGGGCT 62.115 66.667 0.00 0.00 0.00 5.19
3215 3580 3.781307 TCGTGAGGAATGGCGGGG 61.781 66.667 0.00 0.00 0.00 5.73
3216 3581 2.511600 GTCGTGAGGAATGGCGGG 60.512 66.667 0.00 0.00 0.00 6.13
3217 3582 2.885644 CGTCGTGAGGAATGGCGG 60.886 66.667 0.00 0.00 39.28 6.13
3218 3583 2.885644 CCGTCGTGAGGAATGGCG 60.886 66.667 0.00 0.00 42.69 5.69
3219 3584 3.195698 GCCGTCGTGAGGAATGGC 61.196 66.667 4.28 4.28 40.14 4.40
3809 4272 0.175760 ATTCTACACGGCGCAGTGAT 59.824 50.000 40.38 27.38 44.43 3.06
3838 4302 9.194716 CAATTCTACACGTGATGTTAAAATACG 57.805 33.333 25.01 0.00 43.19 3.06
3869 4333 3.001395 AGAGCTATCGCGACAACATAC 57.999 47.619 12.93 0.00 42.32 2.39
3871 4335 2.196749 CAAGAGCTATCGCGACAACAT 58.803 47.619 12.93 0.00 42.32 2.71
3873 4337 1.321743 CACAAGAGCTATCGCGACAAC 59.678 52.381 12.93 2.92 42.32 3.32
3879 4343 0.461961 AGACCCACAAGAGCTATCGC 59.538 55.000 0.00 0.00 0.00 4.58
3880 4344 2.952978 ACTAGACCCACAAGAGCTATCG 59.047 50.000 0.00 0.00 0.00 2.92
3881 4345 4.498345 CGAACTAGACCCACAAGAGCTATC 60.498 50.000 0.00 0.00 0.00 2.08
3882 4346 3.381908 CGAACTAGACCCACAAGAGCTAT 59.618 47.826 0.00 0.00 0.00 2.97
3884 4348 1.546476 CGAACTAGACCCACAAGAGCT 59.454 52.381 0.00 0.00 0.00 4.09
3885 4349 1.272769 ACGAACTAGACCCACAAGAGC 59.727 52.381 0.00 0.00 0.00 4.09
3886 4350 3.576648 GAACGAACTAGACCCACAAGAG 58.423 50.000 0.00 0.00 0.00 2.85
3908 4406 3.454573 AGCACATGCATTGCCCGG 61.455 61.111 22.14 0.00 45.16 5.73
3920 4429 4.994471 CTGCCGCAGACCAGCACA 62.994 66.667 15.74 0.00 32.44 4.57
3936 4450 0.396811 CGGGACCTTCAAGTCAACCT 59.603 55.000 0.00 0.00 38.59 3.50
3963 4477 4.012374 TCAGGTTCTTCATCTTGAATGGC 58.988 43.478 0.00 0.00 35.59 4.40
4114 4634 6.316140 TCATCACCACTTACAGTATGATTTGC 59.684 38.462 0.51 0.00 39.69 3.68
4174 4714 2.433662 TTCATGGATGAAATCGGGCA 57.566 45.000 0.00 0.00 46.86 5.36
4196 4736 1.154205 CGTGGATGCCATTCGTCTCC 61.154 60.000 0.00 0.00 35.28 3.71
4223 4764 0.395311 TCGACCCCTACAGGCTACAG 60.395 60.000 0.00 0.00 0.00 2.74
4227 4768 2.754658 CGTCGACCCCTACAGGCT 60.755 66.667 10.58 0.00 0.00 4.58
4228 4769 4.509737 GCGTCGACCCCTACAGGC 62.510 72.222 10.58 0.58 0.00 4.85
4229 4770 3.834799 GGCGTCGACCCCTACAGG 61.835 72.222 12.13 0.00 0.00 4.00
4230 4771 3.834799 GGGCGTCGACCCCTACAG 61.835 72.222 26.18 7.30 45.00 2.74
4246 4802 3.722728 AAGAGTGCAAAAGAAGCAAGG 57.277 42.857 0.00 0.00 44.64 3.61
4341 5095 6.950041 CCTGATCATTATTGATGGGGTTACAT 59.050 38.462 4.87 0.00 42.73 2.29
4366 5128 1.667236 TGCATGGATCGATCAACACC 58.333 50.000 25.93 10.27 0.00 4.16
4378 5140 5.423704 AACCAAATGATTGATTGCATGGA 57.576 34.783 2.80 0.00 38.94 3.41
4848 5643 4.082665 TCAGCCATGGATCTTCATCTTC 57.917 45.455 18.40 0.00 0.00 2.87
4872 5667 1.945662 CGCAAACCAGCAACAGCAC 60.946 57.895 0.00 0.00 0.00 4.40
4880 5675 1.791103 TACCTGCAACGCAAACCAGC 61.791 55.000 0.00 0.00 38.41 4.85
4881 5676 0.040425 GTACCTGCAACGCAAACCAG 60.040 55.000 0.00 0.00 38.41 4.00
4882 5677 1.777030 CGTACCTGCAACGCAAACCA 61.777 55.000 0.00 0.00 38.41 3.67
4883 5678 1.082366 CGTACCTGCAACGCAAACC 60.082 57.895 0.00 0.00 38.41 3.27
4884 5679 4.507794 CGTACCTGCAACGCAAAC 57.492 55.556 0.00 0.00 38.41 2.93
5128 5934 2.357952 TGTCGAACATCTATCTCGGTGG 59.642 50.000 0.00 0.00 33.44 4.61
5183 6491 2.873133 AATCTCGCTACTGCCACTAC 57.127 50.000 0.00 0.00 35.36 2.73
5189 6497 1.681793 TGGTCCTAATCTCGCTACTGC 59.318 52.381 0.00 0.00 0.00 4.40
5212 6520 2.646250 GCCACGTATGTTTGTGTTGTC 58.354 47.619 0.00 0.00 34.28 3.18
5239 6554 0.106708 AAGCAAGCGAACAGAGTCCA 59.893 50.000 0.00 0.00 0.00 4.02
5240 6555 1.195674 GAAAGCAAGCGAACAGAGTCC 59.804 52.381 0.00 0.00 0.00 3.85
5241 6556 1.867233 TGAAAGCAAGCGAACAGAGTC 59.133 47.619 0.00 0.00 0.00 3.36
5242 6557 1.953559 TGAAAGCAAGCGAACAGAGT 58.046 45.000 0.00 0.00 0.00 3.24
5243 6558 2.644078 GTTGAAAGCAAGCGAACAGAG 58.356 47.619 0.00 0.00 34.01 3.35
5244 6559 1.003972 CGTTGAAAGCAAGCGAACAGA 60.004 47.619 0.00 0.00 34.01 3.41
5245 6560 1.388888 CGTTGAAAGCAAGCGAACAG 58.611 50.000 0.00 0.00 34.01 3.16
5246 6561 0.028770 CCGTTGAAAGCAAGCGAACA 59.971 50.000 0.00 0.00 34.01 3.18
5259 6574 2.144078 TGTCCCCTGCTTCCGTTGA 61.144 57.895 0.00 0.00 0.00 3.18
5332 6648 5.163824 CGATATAATGGCATGCAGATTTCGT 60.164 40.000 21.36 8.94 0.00 3.85
5356 6680 1.479730 CACCCCCTTAGTAAGACCGAC 59.520 57.143 11.66 0.00 0.00 4.79
5365 6689 0.178912 ACTCCGAACACCCCCTTAGT 60.179 55.000 0.00 0.00 0.00 2.24
5369 6693 2.606826 GGACTCCGAACACCCCCT 60.607 66.667 0.00 0.00 0.00 4.79
5370 6694 3.714001 GGGACTCCGAACACCCCC 61.714 72.222 0.00 0.00 36.65 5.40
5372 6696 3.714001 GGGGGACTCCGAACACCC 61.714 72.222 0.00 0.00 42.81 4.61
5421 6745 4.439968 ACTCCGTTATTTTAGCCTGTAGC 58.560 43.478 0.00 0.00 44.25 3.58
5422 6746 5.293569 CCAACTCCGTTATTTTAGCCTGTAG 59.706 44.000 0.00 0.00 0.00 2.74
5423 6747 5.046448 TCCAACTCCGTTATTTTAGCCTGTA 60.046 40.000 0.00 0.00 0.00 2.74
5424 6748 4.007659 CCAACTCCGTTATTTTAGCCTGT 58.992 43.478 0.00 0.00 0.00 4.00
5425 6749 4.258543 TCCAACTCCGTTATTTTAGCCTG 58.741 43.478 0.00 0.00 0.00 4.85
5426 6750 4.563140 TCCAACTCCGTTATTTTAGCCT 57.437 40.909 0.00 0.00 0.00 4.58
5427 6751 4.095932 CCTTCCAACTCCGTTATTTTAGCC 59.904 45.833 0.00 0.00 0.00 3.93
5428 6752 4.698780 ACCTTCCAACTCCGTTATTTTAGC 59.301 41.667 0.00 0.00 0.00 3.09
5429 6753 6.537660 CCTACCTTCCAACTCCGTTATTTTAG 59.462 42.308 0.00 0.00 0.00 1.85
5430 6754 6.013466 ACCTACCTTCCAACTCCGTTATTTTA 60.013 38.462 0.00 0.00 0.00 1.52
5431 6755 5.221986 ACCTACCTTCCAACTCCGTTATTTT 60.222 40.000 0.00 0.00 0.00 1.82
5432 6756 4.287845 ACCTACCTTCCAACTCCGTTATTT 59.712 41.667 0.00 0.00 0.00 1.40
5433 6757 3.842436 ACCTACCTTCCAACTCCGTTATT 59.158 43.478 0.00 0.00 0.00 1.40
5434 6758 3.197116 CACCTACCTTCCAACTCCGTTAT 59.803 47.826 0.00 0.00 0.00 1.89
5435 6759 2.564062 CACCTACCTTCCAACTCCGTTA 59.436 50.000 0.00 0.00 0.00 3.18
5436 6760 1.346722 CACCTACCTTCCAACTCCGTT 59.653 52.381 0.00 0.00 0.00 4.44
5437 6761 0.974383 CACCTACCTTCCAACTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
5438 6762 0.391263 GCACCTACCTTCCAACTCCG 60.391 60.000 0.00 0.00 0.00 4.63
5439 6763 0.984995 AGCACCTACCTTCCAACTCC 59.015 55.000 0.00 0.00 0.00 3.85
5440 6764 1.066071 GGAGCACCTACCTTCCAACTC 60.066 57.143 0.00 0.00 0.00 3.01
5441 6765 0.984995 GGAGCACCTACCTTCCAACT 59.015 55.000 0.00 0.00 0.00 3.16
5442 6766 0.391263 CGGAGCACCTACCTTCCAAC 60.391 60.000 0.00 0.00 0.00 3.77
5443 6767 1.980052 CGGAGCACCTACCTTCCAA 59.020 57.895 0.00 0.00 0.00 3.53
5444 6768 3.708210 CGGAGCACCTACCTTCCA 58.292 61.111 0.00 0.00 0.00 3.53
5457 6781 1.341531 AGAATTACGGGATCTGCGGAG 59.658 52.381 0.00 0.00 0.00 4.63
5458 6782 1.068588 CAGAATTACGGGATCTGCGGA 59.931 52.381 0.00 0.00 34.72 5.54
5459 6783 1.502231 CAGAATTACGGGATCTGCGG 58.498 55.000 0.00 0.00 34.72 5.69
5462 6786 3.388308 CTCTGCAGAATTACGGGATCTG 58.612 50.000 18.85 0.00 42.70 2.90
5463 6787 2.224161 GCTCTGCAGAATTACGGGATCT 60.224 50.000 18.85 0.00 0.00 2.75
5464 6788 2.139118 GCTCTGCAGAATTACGGGATC 58.861 52.381 18.85 0.00 0.00 3.36
5465 6789 1.202698 GGCTCTGCAGAATTACGGGAT 60.203 52.381 18.85 0.00 0.00 3.85
5466 6790 0.178068 GGCTCTGCAGAATTACGGGA 59.822 55.000 18.85 0.00 0.00 5.14
5467 6791 1.154205 CGGCTCTGCAGAATTACGGG 61.154 60.000 18.85 5.15 0.00 5.28
5468 6792 1.154205 CCGGCTCTGCAGAATTACGG 61.154 60.000 24.15 24.15 0.00 4.02
5469 6793 1.766143 GCCGGCTCTGCAGAATTACG 61.766 60.000 22.15 17.75 0.00 3.18
5470 6794 1.766143 CGCCGGCTCTGCAGAATTAC 61.766 60.000 26.68 7.47 0.00 1.89
5471 6795 1.521457 CGCCGGCTCTGCAGAATTA 60.521 57.895 26.68 0.00 0.00 1.40
5472 6796 2.821366 CGCCGGCTCTGCAGAATT 60.821 61.111 26.68 0.00 0.00 2.17
5473 6797 4.845580 CCGCCGGCTCTGCAGAAT 62.846 66.667 26.68 0.00 0.00 2.40
5495 6819 1.351017 TGAGACTTAGGGCCTGTTTGG 59.649 52.381 18.53 3.95 39.35 3.28
5496 6820 2.039084 ACTGAGACTTAGGGCCTGTTTG 59.961 50.000 18.53 5.84 0.00 2.93
5497 6821 2.303311 GACTGAGACTTAGGGCCTGTTT 59.697 50.000 18.53 0.66 0.00 2.83
5498 6822 1.903183 GACTGAGACTTAGGGCCTGTT 59.097 52.381 18.53 0.00 0.00 3.16
5499 6823 1.562783 GACTGAGACTTAGGGCCTGT 58.437 55.000 18.53 6.20 0.00 4.00
5500 6824 0.457851 CGACTGAGACTTAGGGCCTG 59.542 60.000 18.53 2.03 0.00 4.85
5501 6825 0.331954 TCGACTGAGACTTAGGGCCT 59.668 55.000 12.58 12.58 0.00 5.19
5502 6826 0.456628 GTCGACTGAGACTTAGGGCC 59.543 60.000 8.70 0.00 38.09 5.80
5522 6846 8.178313 TGAGAACTAGACATAACAAAGTCTCA 57.822 34.615 0.00 0.00 43.59 3.27
5530 6854 6.322491 CACACGATGAGAACTAGACATAACA 58.678 40.000 0.00 0.00 0.00 2.41
5540 6864 6.094048 CCATTAATTTCCACACGATGAGAACT 59.906 38.462 0.00 0.00 0.00 3.01
5549 6873 7.535139 AGTCATTTACCATTAATTTCCACACG 58.465 34.615 0.00 0.00 0.00 4.49
5550 6874 7.973944 GGAGTCATTTACCATTAATTTCCACAC 59.026 37.037 0.00 0.00 0.00 3.82
5551 6875 7.893302 AGGAGTCATTTACCATTAATTTCCACA 59.107 33.333 0.00 0.00 0.00 4.17
5560 6884 6.153170 TCACGTACAGGAGTCATTTACCATTA 59.847 38.462 0.00 0.00 0.00 1.90
5580 6907 1.873903 GCCTGTCATCACAACTCACGT 60.874 52.381 0.00 0.00 29.82 4.49
5585 6912 2.289945 GGAAGAGCCTGTCATCACAACT 60.290 50.000 0.00 0.00 29.82 3.16
5594 6921 2.435059 GCCGTGGAAGAGCCTGTC 60.435 66.667 0.00 0.00 37.63 3.51
5643 6970 4.778143 CCTTTCAGGGCCGGGTCG 62.778 72.222 2.18 0.00 0.00 4.79
5668 6995 3.997672 GGATGAGATCCTTGACGGG 57.002 57.895 0.00 0.00 46.19 5.28
5765 7097 1.343821 GCACGCGTCCACGATAAAG 59.656 57.895 9.86 0.00 43.02 1.85
5767 7099 1.153726 ATGCACGCGTCCACGATAA 60.154 52.632 9.86 0.00 43.02 1.75
5979 7313 2.564975 GTCGGACGATCGTGTGGT 59.435 61.111 28.12 0.00 0.00 4.16
6142 7531 3.385111 ACGTCTTGAAGAAGTGAAGGACT 59.615 43.478 12.82 0.00 35.66 3.85
6171 7560 1.399440 CAACGATAGCTTGCAGTGCAT 59.601 47.619 20.50 6.80 37.96 3.96
6172 7561 0.798159 CAACGATAGCTTGCAGTGCA 59.202 50.000 15.37 15.37 42.67 4.57
6173 7562 0.522076 GCAACGATAGCTTGCAGTGC 60.522 55.000 8.58 8.58 45.72 4.40
6174 7563 3.593247 GCAACGATAGCTTGCAGTG 57.407 52.632 2.44 0.00 45.72 3.66
6186 7575 2.736995 GTAGCGCACCTGCAACGA 60.737 61.111 11.47 0.00 42.21 3.85
6210 7599 6.480763 TGTGGACCAAACACATATAATCACT 58.519 36.000 0.00 0.00 43.35 3.41
6242 7634 8.082242 ACTCCTGCATTTTATACAAAGAACAAC 58.918 33.333 0.00 0.00 0.00 3.32
6326 7718 7.905604 TTATACTCCATCAAACAACACTCAG 57.094 36.000 0.00 0.00 0.00 3.35
6347 7739 9.723601 AAACTTAATGTGGTGCATGAATTTTAT 57.276 25.926 0.00 0.00 37.96 1.40
6384 7776 1.999735 CCGTGCAATGTGGTACTACAG 59.000 52.381 17.51 6.26 33.44 2.74
6385 7777 1.345089 ACCGTGCAATGTGGTACTACA 59.655 47.619 14.91 14.91 33.25 2.74
6400 7792 5.125739 AGGTCTAGAAGACATAAGAACCGTG 59.874 44.000 9.15 0.00 46.79 4.94
6402 7794 5.838531 AGGTCTAGAAGACATAAGAACCG 57.161 43.478 9.15 0.00 46.79 4.44
6403 7795 7.340999 AGAGAAGGTCTAGAAGACATAAGAACC 59.659 40.741 9.15 0.00 46.79 3.62
6404 7796 8.288689 AGAGAAGGTCTAGAAGACATAAGAAC 57.711 38.462 9.15 0.00 46.79 3.01
6405 7797 8.333235 AGAGAGAAGGTCTAGAAGACATAAGAA 58.667 37.037 9.15 0.00 46.79 2.52
6407 7799 8.519799 AAGAGAGAAGGTCTAGAAGACATAAG 57.480 38.462 9.15 0.00 46.79 1.73
6409 7801 7.340743 CCAAAGAGAGAAGGTCTAGAAGACATA 59.659 40.741 9.15 0.00 46.79 2.29
6410 7802 6.154363 CCAAAGAGAGAAGGTCTAGAAGACAT 59.846 42.308 9.15 0.00 46.79 3.06
6411 7803 5.478679 CCAAAGAGAGAAGGTCTAGAAGACA 59.521 44.000 9.15 0.00 46.79 3.41
6412 7804 5.105513 CCCAAAGAGAGAAGGTCTAGAAGAC 60.106 48.000 0.00 0.00 44.32 3.01
6413 7805 5.020132 CCCAAAGAGAGAAGGTCTAGAAGA 58.980 45.833 0.00 0.00 34.71 2.87
6414 7806 4.775253 ACCCAAAGAGAGAAGGTCTAGAAG 59.225 45.833 0.00 0.00 34.71 2.85
6415 7807 4.528596 CACCCAAAGAGAGAAGGTCTAGAA 59.471 45.833 0.00 0.00 34.71 2.10
6416 7808 4.090090 CACCCAAAGAGAGAAGGTCTAGA 58.910 47.826 0.00 0.00 34.71 2.43
6417 7809 3.835395 ACACCCAAAGAGAGAAGGTCTAG 59.165 47.826 0.00 0.00 34.71 2.43
6418 7810 3.578716 CACACCCAAAGAGAGAAGGTCTA 59.421 47.826 0.00 0.00 34.71 2.59
6419 7811 2.370189 CACACCCAAAGAGAGAAGGTCT 59.630 50.000 0.00 0.00 38.71 3.85
6420 7812 2.551071 CCACACCCAAAGAGAGAAGGTC 60.551 54.545 0.00 0.00 0.00 3.85
6421 7813 1.421646 CCACACCCAAAGAGAGAAGGT 59.578 52.381 0.00 0.00 0.00 3.50
6422 7814 1.884067 GCCACACCCAAAGAGAGAAGG 60.884 57.143 0.00 0.00 0.00 3.46
6423 7815 1.072965 AGCCACACCCAAAGAGAGAAG 59.927 52.381 0.00 0.00 0.00 2.85
6424 7816 1.140312 AGCCACACCCAAAGAGAGAA 58.860 50.000 0.00 0.00 0.00 2.87
6425 7817 1.902508 CTAGCCACACCCAAAGAGAGA 59.097 52.381 0.00 0.00 0.00 3.10
6426 7818 1.677217 GCTAGCCACACCCAAAGAGAG 60.677 57.143 2.29 0.00 0.00 3.20
6439 7831 0.034960 AGTCGACTGAGAGCTAGCCA 60.035 55.000 19.30 1.04 0.00 4.75
6529 7921 6.127338 ACCGTGAGATCTTACATTGAGATTCA 60.127 38.462 16.95 0.00 34.13 2.57
6530 7922 6.276847 ACCGTGAGATCTTACATTGAGATTC 58.723 40.000 16.95 0.00 34.13 2.52
6531 7923 6.227298 ACCGTGAGATCTTACATTGAGATT 57.773 37.500 16.95 0.00 34.13 2.40
6536 7928 6.923508 TGCTATAACCGTGAGATCTTACATTG 59.076 38.462 16.95 7.63 0.00 2.82
6540 7932 5.795939 CGATGCTATAACCGTGAGATCTTAC 59.204 44.000 7.56 7.56 0.00 2.34
6554 7946 9.684448 CTGAGAAAATCTTAGTCGATGCTATAA 57.316 33.333 0.00 0.00 0.00 0.98
6560 7952 6.254589 GTCCACTGAGAAAATCTTAGTCGATG 59.745 42.308 2.18 0.00 40.76 3.84
6582 7974 5.948992 ACATTCTTGCTAAGTTTCAGTCC 57.051 39.130 0.00 0.00 0.00 3.85
6584 7976 8.451908 AGTAAACATTCTTGCTAAGTTTCAGT 57.548 30.769 0.00 0.00 34.58 3.41
6609 8001 9.223099 TGTATTCGATAATACTCTCACCGATTA 57.777 33.333 8.36 0.00 45.22 1.75
6610 8002 8.107399 TGTATTCGATAATACTCTCACCGATT 57.893 34.615 8.36 0.00 45.22 3.34
6628 8020 3.374058 ACCCTCGCTGAATTTTGTATTCG 59.626 43.478 0.00 0.00 0.00 3.34
6632 8024 3.410631 TCACCCTCGCTGAATTTTGTA 57.589 42.857 0.00 0.00 0.00 2.41
6639 8031 2.358957 CATCAATTCACCCTCGCTGAA 58.641 47.619 0.00 0.00 32.24 3.02
6643 8035 1.017387 GTCCATCAATTCACCCTCGC 58.983 55.000 0.00 0.00 0.00 5.03
6649 8041 4.613622 CGGTTGTCTTGTCCATCAATTCAC 60.614 45.833 0.00 0.00 35.35 3.18
6677 8069 2.690786 ACAATCATGCATTTGTGGTGC 58.309 42.857 14.49 0.00 42.81 5.01
6684 8076 2.234414 AGCCGGAAACAATCATGCATTT 59.766 40.909 5.05 0.00 0.00 2.32
6687 8079 2.121291 TAGCCGGAAACAATCATGCA 57.879 45.000 5.05 0.00 0.00 3.96
6711 8103 5.106078 ACACAAAAGAAAACCGCTTACTTCA 60.106 36.000 0.00 0.00 0.00 3.02
6715 8107 4.916870 AGACACAAAAGAAAACCGCTTAC 58.083 39.130 0.00 0.00 0.00 2.34
6716 8108 5.124138 TCAAGACACAAAAGAAAACCGCTTA 59.876 36.000 0.00 0.00 0.00 3.09
6717 8109 4.082463 TCAAGACACAAAAGAAAACCGCTT 60.082 37.500 0.00 0.00 0.00 4.68
6719 8111 3.765026 TCAAGACACAAAAGAAAACCGC 58.235 40.909 0.00 0.00 0.00 5.68
6720 8112 4.793216 CACTCAAGACACAAAAGAAAACCG 59.207 41.667 0.00 0.00 0.00 4.44
6721 8113 4.562789 GCACTCAAGACACAAAAGAAAACC 59.437 41.667 0.00 0.00 0.00 3.27
6723 8115 5.384063 TGCACTCAAGACACAAAAGAAAA 57.616 34.783 0.00 0.00 0.00 2.29
6730 8407 8.094548 AGTACTATTTATGCACTCAAGACACAA 58.905 33.333 0.00 0.00 0.00 3.33
6732 8409 7.222999 GGAGTACTATTTATGCACTCAAGACAC 59.777 40.741 0.00 0.00 37.87 3.67
6741 8418 9.542462 TTTACTGATGGAGTACTATTTATGCAC 57.458 33.333 0.00 0.00 36.86 4.57
6774 8451 6.315144 TGCTGCTAGCGATCTAAATGTTTTTA 59.685 34.615 10.77 0.00 46.26 1.52
6775 8452 5.123820 TGCTGCTAGCGATCTAAATGTTTTT 59.876 36.000 10.77 0.00 46.26 1.94
6776 8453 4.635765 TGCTGCTAGCGATCTAAATGTTTT 59.364 37.500 10.77 0.00 46.26 2.43
6777 8454 4.191544 TGCTGCTAGCGATCTAAATGTTT 58.808 39.130 10.77 0.00 46.26 2.83
6778 8455 3.797039 TGCTGCTAGCGATCTAAATGTT 58.203 40.909 10.77 0.00 46.26 2.71
6779 8456 3.181471 ACTGCTGCTAGCGATCTAAATGT 60.181 43.478 10.77 0.00 46.26 2.71
6780 8457 3.388308 ACTGCTGCTAGCGATCTAAATG 58.612 45.455 10.77 0.00 46.26 2.32
6781 8458 3.742433 ACTGCTGCTAGCGATCTAAAT 57.258 42.857 10.77 0.00 46.26 1.40
6782 8459 3.551046 GCTACTGCTGCTAGCGATCTAAA 60.551 47.826 10.77 0.00 46.26 1.85
6783 8460 2.030717 GCTACTGCTGCTAGCGATCTAA 60.031 50.000 10.77 0.00 46.26 2.10
6784 8461 1.537638 GCTACTGCTGCTAGCGATCTA 59.462 52.381 10.77 0.00 46.26 1.98
6785 8462 0.313672 GCTACTGCTGCTAGCGATCT 59.686 55.000 10.77 0.00 46.26 2.75
6786 8463 0.031314 TGCTACTGCTGCTAGCGATC 59.969 55.000 10.77 1.91 46.26 3.69
6787 8464 0.031857 CTGCTACTGCTGCTAGCGAT 59.968 55.000 10.77 0.00 46.26 4.58
6788 8465 1.435105 CTGCTACTGCTGCTAGCGA 59.565 57.895 10.77 0.00 46.26 4.93
6789 8466 4.009539 CTGCTACTGCTGCTAGCG 57.990 61.111 10.77 6.22 46.26 4.26
6795 8472 0.516001 CTGTGTTGCTGCTACTGCTG 59.484 55.000 14.81 8.28 40.48 4.41
6801 8579 0.603707 GCTGGTCTGTGTTGCTGCTA 60.604 55.000 0.00 0.00 0.00 3.49
6808 8586 1.228063 CCAGCAGCTGGTCTGTGTT 60.228 57.895 30.97 0.00 45.82 3.32
6809 8587 2.429058 CCAGCAGCTGGTCTGTGT 59.571 61.111 30.97 0.00 45.82 3.72
6837 8615 1.122501 CGTGTCGTGATCTTCAACGTG 59.877 52.381 0.00 0.00 0.00 4.49
6842 8620 1.532437 ACGTACGTGTCGTGATCTTCA 59.468 47.619 22.14 0.00 41.39 3.02
6846 8624 1.436852 CGTACGTACGTGTCGTGATC 58.563 55.000 33.95 15.12 44.13 2.92
6867 8645 1.134367 GCTTAAAAATCCTGCCCGTCC 59.866 52.381 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.