AutoCloner

Multiple sequence alignment - TraesCS1B01G259900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G259900	chr1B	100.000	3932	0	0	1	3932	457326324	457322393	0.000000e+00	7262
1	TraesCS1B01G259900	chr1B	95.913	832	32	2	1	831	104949984	104950814	0.000000e+00	1347
2	TraesCS1B01G259900	chr1A	94.411	2827	108	19	832	3641	441115724	441112931	0.000000e+00	4300
3	TraesCS1B01G259900	chr1A	91.935	310	20	4	3627	3932	441112895	441112587	2.810000e-116	429
4	TraesCS1B01G259900	chr1A	84.112	321	32	12	3627	3929	441184471	441184152	3.840000e-75	292
5	TraesCS1B01G259900	chr1A	94.030	67	1	3	836	899	441117234	441117168	8.990000e-17	99
6	TraesCS1B01G259900	chr1D	93.708	2829	118	23	832	3641	341481099	341478312	0.000000e+00	4183
7	TraesCS1B01G259900	chr1D	93.548	310	15	4	3627	3932	341478276	341477968	1.290000e-124	457
8	TraesCS1B01G259900	chr5A	96.081	842	30	3	2	841	664389699	664388859	0.000000e+00	1369
9	TraesCS1B01G259900	chr5A	95.514	847	35	3	1	845	653660003	653659158	0.000000e+00	1351
10	TraesCS1B01G259900	chr3B	96.085	843	28	4	1	839	171120078	171120919	0.000000e+00	1369
11	TraesCS1B01G259900	chr3B	95.503	845	35	3	1	844	818907513	818906671	0.000000e+00	1347
12	TraesCS1B01G259900	chr4B	95.962	842	30	4	1	839	665293819	665292979	0.000000e+00	1363
13	TraesCS1B01G259900	chr4B	95.913	832	33	1	1	831	28682346	28681515	0.000000e+00	1347
14	TraesCS1B01G259900	chr3A	95.863	846	26	6	1	839	378337818	378336975	0.000000e+00	1360
15	TraesCS1B01G259900	chr3A	80.263	228	23	11	3719	3926	31808744	31808519	6.810000e-33	152
16	TraesCS1B01G259900	chr5B	95.585	838	35	2	4	841	462905146	462905981	0.000000e+00	1341
17	TraesCS1B01G259900	chr7D	83.586	1121	129	21	1609	2713	577959616	577960697	0.000000e+00	1000
18	TraesCS1B01G259900	chr7D	83.408	898	112	13	1630	2508	578167128	578166249	0.000000e+00	798
19	TraesCS1B01G259900	chr7D	83.438	797	111	13	1486	2275	577918508	577919290	0.000000e+00	721
20	TraesCS1B01G259900	chr7D	86.427	501	60	7	1778	2273	577880761	577881258	3.460000e-150	542
21	TraesCS1B01G259900	chr7A	82.060	1126	153	29	1194	2275	670163623	670164743	0.000000e+00	915
22	TraesCS1B01G259900	chr7A	85.629	501	70	2	1630	2130	670345906	670345408	3.480000e-145	525
23	TraesCS1B01G259900	chr7A	80.142	423	64	8	1126	1542	670346379	670345971	8.260000e-77	298
24	TraesCS1B01G259900	chr7B	85.157	667	84	10	1620	2275	641365615	641366277	0.000000e+00	669
25	TraesCS1B01G259900	chr7B	83.285	694	79	13	2022	2713	641455337	641455995	4.350000e-169	604
26	TraesCS1B01G259900	chr7B	85.993	564	66	8	1632	2185	641335545	641336105	3.380000e-165	592

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G259900	chr1B	457322393	457326324	3931	True	7262.000000	7262	100.000000	1	3932	1	chr1B.!!$R1	3931
1	TraesCS1B01G259900	chr1B	104949984	104950814	830	False	1347.000000	1347	95.913000	1	831	1	chr1B.!!$F1	830
2	TraesCS1B01G259900	chr1A	441112587	441117234	4647	True	1609.333333	4300	93.458667	832	3932	3	chr1A.!!$R2	3100
3	TraesCS1B01G259900	chr1D	341477968	341481099	3131	True	2320.000000	4183	93.628000	832	3932	2	chr1D.!!$R1	3100
4	TraesCS1B01G259900	chr5A	664388859	664389699	840	True	1369.000000	1369	96.081000	2	841	1	chr5A.!!$R2	839
5	TraesCS1B01G259900	chr5A	653659158	653660003	845	True	1351.000000	1351	95.514000	1	845	1	chr5A.!!$R1	844
6	TraesCS1B01G259900	chr3B	171120078	171120919	841	False	1369.000000	1369	96.085000	1	839	1	chr3B.!!$F1	838
7	TraesCS1B01G259900	chr3B	818906671	818907513	842	True	1347.000000	1347	95.503000	1	844	1	chr3B.!!$R1	843
8	TraesCS1B01G259900	chr4B	665292979	665293819	840	True	1363.000000	1363	95.962000	1	839	1	chr4B.!!$R2	838
9	TraesCS1B01G259900	chr4B	28681515	28682346	831	True	1347.000000	1347	95.913000	1	831	1	chr4B.!!$R1	830
10	TraesCS1B01G259900	chr3A	378336975	378337818	843	True	1360.000000	1360	95.863000	1	839	1	chr3A.!!$R2	838
11	TraesCS1B01G259900	chr5B	462905146	462905981	835	False	1341.000000	1341	95.585000	4	841	1	chr5B.!!$F1	837
12	TraesCS1B01G259900	chr7D	577959616	577960697	1081	False	1000.000000	1000	83.586000	1609	2713	1	chr7D.!!$F3	1104
13	TraesCS1B01G259900	chr7D	578166249	578167128	879	True	798.000000	798	83.408000	1630	2508	1	chr7D.!!$R1	878
14	TraesCS1B01G259900	chr7D	577918508	577919290	782	False	721.000000	721	83.438000	1486	2275	1	chr7D.!!$F2	789
15	TraesCS1B01G259900	chr7A	670163623	670164743	1120	False	915.000000	915	82.060000	1194	2275	1	chr7A.!!$F1	1081
16	TraesCS1B01G259900	chr7A	670345408	670346379	971	True	411.500000	525	82.885500	1126	2130	2	chr7A.!!$R1	1004
17	TraesCS1B01G259900	chr7B	641365615	641366277	662	False	669.000000	669	85.157000	1620	2275	1	chr7B.!!$F2	655
18	TraesCS1B01G259900	chr7B	641455337	641455995	658	False	604.000000	604	83.285000	2022	2713	1	chr7B.!!$F3	691
19	TraesCS1B01G259900	chr7B	641335545	641336105	560	False	592.000000	592	85.993000	1632	2185	1	chr7B.!!$F1	553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
925	1612	1.079405	GGCATCAACCGGAGTCGAA	60.079	57.895	9.46	0.0	39.0	3.71	F
1713	2451	0.894835	GCCATGGGTTTTCGGTTGAT	59.105	50.000	15.13	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1773	2517	0.998145	AAAGGGCCAAGAGCTGATCT	59.002	50.0	6.18	0.0	43.05	2.75	R
3538	4339	0.539438	TGTCAAACCCCATGTCAGGC	60.539	55.0	0.00	0.0	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
389	398	9.131791	GGGAATTAAGAAACTAGATTTGCCATA	57.868	33.333	0.00	0.00	0.00	2.74
672	687	3.747529	ACGGATTTAACGGTGAAAACGAT	59.252	39.130	19.09	6.58	35.23	3.73
776	792	1.334960	CGTGGCAAAATGAGTGGTGAC	60.335	52.381	0.00	0.00	0.00	3.67
880	1560	4.883006	TCCACTTTGGTTTACTGGTTGTAC	59.117	41.667	0.00	0.00	39.03	2.90
881	1561	4.641094	CCACTTTGGTTTACTGGTTGTACA	59.359	41.667	0.00	0.00	31.35	2.90
882	1562	5.300792	CCACTTTGGTTTACTGGTTGTACAT	59.699	40.000	0.00	0.00	31.35	2.29
883	1563	6.487331	CCACTTTGGTTTACTGGTTGTACATA	59.513	38.462	0.00	0.00	31.35	2.29
885	1565	8.073768	CACTTTGGTTTACTGGTTGTACATAAG	58.926	37.037	0.00	0.00	0.00	1.73
886	1566	6.563222	TTGGTTTACTGGTTGTACATAAGC	57.437	37.500	0.00	0.00	0.00	3.09
888	1568	5.935789	TGGTTTACTGGTTGTACATAAGCTC	59.064	40.000	0.00	0.00	0.00	4.09
889	1569	6.171213	GGTTTACTGGTTGTACATAAGCTCT	58.829	40.000	0.00	0.00	0.00	4.09
925	1612	1.079405	GGCATCAACCGGAGTCGAA	60.079	57.895	9.46	0.00	39.00	3.71
1182	1869	4.759205	GCCACCCCTTCCGCCATT	62.759	66.667	0.00	0.00	0.00	3.16
1184	1871	2.354729	CACCCCTTCCGCCATTGA	59.645	61.111	0.00	0.00	0.00	2.57
1271	1961	0.900647	CTCAAGTCCCGTGACCTCCT	60.901	60.000	0.00	0.00	42.81	3.69
1272	1962	0.898789	TCAAGTCCCGTGACCTCCTC	60.899	60.000	0.00	0.00	42.81	3.71
1488	2218	2.882876	CAGGTTCATGCAGCTGCC	59.117	61.111	34.64	19.03	41.18	4.85
1647	2385	4.343814	TCTGTCATGTCAGTGTACAAGGAA	59.656	41.667	17.67	0.00	36.85	3.36
1713	2451	0.894835	GCCATGGGTTTTCGGTTGAT	59.105	50.000	15.13	0.00	0.00	2.57
1723	2461	4.083003	GGTTTTCGGTTGATGAATGCAGTA	60.083	41.667	0.00	0.00	0.00	2.74
1756	2500	3.988517	GCTTACCGCTTGTACAGATATCC	59.011	47.826	0.00	0.00	35.14	2.59
1987	2745	1.676967	GCTCTGGGCCTCTTTGTGG	60.677	63.158	4.53	0.00	34.27	4.17
2083	2841	1.589716	GATGGAGCAGGGCACACAAC	61.590	60.000	0.00	0.00	0.00	3.32
2085	2843	2.263741	GGAGCAGGGCACACAACTG	61.264	63.158	0.00	0.00	35.40	3.16
2365	3146	0.771127	TGCTTGTAGCTTGGGAGGTT	59.229	50.000	0.00	0.00	42.97	3.50
2589	3378	2.356535	GGATTTCACCATGGCAGAGTCT	60.357	50.000	13.04	0.00	0.00	3.24
2897	3687	0.599558	CATGCTCCTGGTTGTGTTGG	59.400	55.000	0.00	0.00	0.00	3.77
2929	3719	4.713792	ACACAAGATCCCAAGAAGAGTT	57.286	40.909	0.00	0.00	0.00	3.01
2980	3770	2.354103	GGATTGCACTCTGTGAGCTGTA	60.354	50.000	3.88	0.00	35.23	2.74
3008	3798	7.137426	ACTAACGTAATTATTCAGCTAGGACG	58.863	38.462	0.00	0.00	0.00	4.79
3097	3887	0.731417	GCAAGCACTATGAGCACCAG	59.269	55.000	0.00	0.00	0.00	4.00
3132	3922	3.840831	CGAGAGGGTGCAGAAATCA	57.159	52.632	0.00	0.00	0.00	2.57
3134	3924	1.741732	CGAGAGGGTGCAGAAATCAGG	60.742	57.143	0.00	0.00	0.00	3.86
3146	3936	5.366477	TGCAGAAATCAGGTCATCCAGTATA	59.634	40.000	0.00	0.00	35.89	1.47
3177	3967	7.881775	AAGAACAGTGATCAGGTTTTACTTT	57.118	32.000	12.53	3.22	0.00	2.66
3183	3973	6.912591	CAGTGATCAGGTTTTACTTTGTGTTC	59.087	38.462	0.00	0.00	0.00	3.18
3207	3997	9.965824	TTCATATATGGTGATGCGTATAGTATG	57.034	33.333	12.78	0.00	0.00	2.39
3366	4167	8.679100	GTTACTTAGTGTGATCTGATAGACTGT	58.321	37.037	0.00	0.00	0.00	3.55
3367	4168	7.710676	ACTTAGTGTGATCTGATAGACTGTT	57.289	36.000	0.00	0.00	0.00	3.16
3368	4169	8.809468	ACTTAGTGTGATCTGATAGACTGTTA	57.191	34.615	0.00	0.00	0.00	2.41
3369	4170	8.679100	ACTTAGTGTGATCTGATAGACTGTTAC	58.321	37.037	0.00	0.00	0.00	2.50
3370	4171	8.809468	TTAGTGTGATCTGATAGACTGTTACT	57.191	34.615	0.00	0.00	0.00	2.24
3371	4172	7.328277	AGTGTGATCTGATAGACTGTTACTC	57.672	40.000	0.00	0.00	0.00	2.59
3372	4173	7.116075	AGTGTGATCTGATAGACTGTTACTCT	58.884	38.462	0.00	0.00	0.00	3.24
3412	4213	1.966762	CCCTTGTCAATGCCACCAC	59.033	57.895	0.00	0.00	0.00	4.16
3415	4216	0.888736	CTTGTCAATGCCACCACGGA	60.889	55.000	0.00	0.00	36.56	4.69
3491	4292	1.146263	CCCGAAGCACCTATGGGTC	59.854	63.158	0.00	0.00	45.41	4.46
3492	4293	1.622607	CCCGAAGCACCTATGGGTCA	61.623	60.000	0.00	0.00	45.41	4.02
3493	4294	0.469917	CCGAAGCACCTATGGGTCAT	59.530	55.000	0.00	0.00	45.41	3.06
3494	4295	1.541233	CCGAAGCACCTATGGGTCATC	60.541	57.143	0.00	0.00	45.41	2.92
3495	4296	1.414181	CGAAGCACCTATGGGTCATCT	59.586	52.381	0.00	0.00	45.41	2.90
3496	4297	2.628178	CGAAGCACCTATGGGTCATCTA	59.372	50.000	0.00	0.00	45.41	1.98
3497	4298	3.553096	CGAAGCACCTATGGGTCATCTAC	60.553	52.174	0.00	0.00	45.41	2.59
3498	4299	3.046283	AGCACCTATGGGTCATCTACA	57.954	47.619	0.00	0.00	45.41	2.74
3499	4300	3.384168	AGCACCTATGGGTCATCTACAA	58.616	45.455	0.00	0.00	45.41	2.41
3500	4301	3.389329	AGCACCTATGGGTCATCTACAAG	59.611	47.826	0.00	0.00	45.41	3.16
3501	4302	3.388024	GCACCTATGGGTCATCTACAAGA	59.612	47.826	0.00	0.00	45.41	3.02
3523	4324	7.270757	AGACTACAACTGATGCTAGTGATAG	57.729	40.000	0.00	0.00	30.82	2.08
3538	4339	2.877168	GTGATAGGCATTTGGAGAGCTG	59.123	50.000	0.00	0.00	0.00	4.24
3561	4362	3.074412	CTGACATGGGGTTTGACAGTAC	58.926	50.000	0.00	0.00	33.90	2.73
3583	4384	6.824305	ACCACAATCAAAGAAAGGACATAG	57.176	37.500	0.00	0.00	0.00	2.23
3604	4405	2.418609	GCAAGTTTCCAAAGGTGCTGTT	60.419	45.455	0.00	0.00	0.00	3.16
3629	4430	2.076100	CTTGCAACGTATCTTGGCAGA	58.924	47.619	0.00	0.00	35.68	4.26
3765	4616	5.411361	AGTGTTCATCGCTTGCTAATTACAA	59.589	36.000	0.00	0.00	32.41	2.41
3908	4759	5.687285	CAGGTTTTTCAACAGTGCATTCTAC	59.313	40.000	0.00	0.00	34.15	2.59
3909	4760	4.675114	GGTTTTTCAACAGTGCATTCTACG	59.325	41.667	0.00	0.00	34.15	3.51
3910	4761	3.536158	TTTCAACAGTGCATTCTACGC	57.464	42.857	0.00	0.00	0.00	4.42
3926	4781	0.263765	ACGCTAGGGTGGGAGGAATA	59.736	55.000	12.26	0.00	0.00	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	207	8.493607	TCAAAACATATCAACATGGGATCTAGA	58.506	33.333	5.52	0.00	0.00	2.43
362	371	6.951198	TGGCAAATCTAGTTTCTTAATTCCCA	59.049	34.615	0.00	0.00	0.00	4.37
472	481	3.788333	ATTTTGATGATGGCAACTCCG	57.212	42.857	0.00	0.00	37.80	4.63
797	813	0.931702	CTCACACGTGTTGGCGTTTA	59.068	50.000	20.79	0.00	43.83	2.01
815	831	5.427036	TCTTTTTCGGAAATGTTAACGCT	57.573	34.783	3.67	0.00	0.00	5.07
880	1560	5.695816	GCTGGAGAAGTTGATAGAGCTTATG	59.304	44.000	0.00	0.00	0.00	1.90
881	1561	5.365025	TGCTGGAGAAGTTGATAGAGCTTAT	59.635	40.000	0.00	0.00	0.00	1.73
882	1562	4.711846	TGCTGGAGAAGTTGATAGAGCTTA	59.288	41.667	0.00	0.00	0.00	3.09
883	1563	3.517100	TGCTGGAGAAGTTGATAGAGCTT	59.483	43.478	0.00	0.00	0.00	3.74
885	1565	3.194062	GTGCTGGAGAAGTTGATAGAGC	58.806	50.000	0.00	0.00	0.00	4.09
886	1566	3.443037	CGTGCTGGAGAAGTTGATAGAG	58.557	50.000	0.00	0.00	0.00	2.43
888	1568	2.544685	CCGTGCTGGAGAAGTTGATAG	58.455	52.381	0.00	0.00	42.00	2.08
889	1569	1.405526	GCCGTGCTGGAGAAGTTGATA	60.406	52.381	0.00	0.00	42.00	2.15
1099	1786	4.443266	GCTGAAGAGGCGCGAGGT	62.443	66.667	12.10	0.00	0.00	3.85
1182	1869	4.314440	GCGTGGGTGAGCAGGTCA	62.314	66.667	0.00	0.00	0.00	4.02
1278	1972	3.744719	CCGTCGAACAGCCTCCGA	61.745	66.667	0.00	0.00	0.00	4.55
1469	2183	2.341101	GCAGCTGCATGAACCTGCT	61.341	57.895	33.36	5.68	45.32	4.24
1647	2385	2.271497	GCACTGCTCTGGCCATCT	59.729	61.111	5.51	0.00	37.74	2.90
1713	2451	2.741517	CACCGTTGACATACTGCATTCA	59.258	45.455	0.00	0.00	0.00	2.57
1756	2500	3.073503	TGATCTCCCATAGCCAAATCCTG	59.926	47.826	0.00	0.00	0.00	3.86
1769	2513	1.630126	GGCCAAGAGCTGATCTCCCA	61.630	60.000	0.00	0.00	42.90	4.37
1773	2517	0.998145	AAAGGGCCAAGAGCTGATCT	59.002	50.000	6.18	0.00	43.05	2.75
1987	2745	1.136147	CAGCATTTCGCAGAGCCAC	59.864	57.895	0.00	0.00	46.13	5.01
2083	2841	4.214119	ACATTTATATACCAGCGCTTGCAG	59.786	41.667	7.50	0.00	42.66	4.41
2085	2843	4.466828	CACATTTATATACCAGCGCTTGC	58.533	43.478	7.50	0.00	39.58	4.01
2589	3378	7.264947	TCAGTTTCAACATATTCTCTGCGATA	58.735	34.615	0.00	0.00	0.00	2.92
2897	3687	9.778741	TCTTGGGATCTTGTGTATGAATTATAC	57.221	33.333	0.00	0.00	41.68	1.47
2929	3719	3.701040	GCTGAAGGCAATCAAATCCCTTA	59.299	43.478	0.00	0.00	37.78	2.69
2980	3770	8.472413	TCCTAGCTGAATAATTACGTTAGTTGT	58.528	33.333	0.00	0.00	0.00	3.32
3008	3798	2.086869	CCACATGACCATTGTGAGACC	58.913	52.381	0.00	0.00	35.75	3.85
3097	3887	3.551846	TCTCGGGATAATGGCTTTTTCC	58.448	45.455	12.30	12.30	35.37	3.13
3132	3922	5.132648	TCTTTGCCAATATACTGGATGACCT	59.867	40.000	3.92	0.00	38.96	3.85
3134	3924	6.318648	TGTTCTTTGCCAATATACTGGATGAC	59.681	38.462	3.92	0.00	38.96	3.06
3146	3936	3.508793	CCTGATCACTGTTCTTTGCCAAT	59.491	43.478	0.00	0.00	0.00	3.16
3177	3967	4.702831	ACGCATCACCATATATGAACACA	58.297	39.130	14.54	0.00	0.00	3.72
3183	3973	9.750125	AACATACTATACGCATCACCATATATG	57.250	33.333	5.68	5.68	0.00	1.78
3368	4169	9.429359	GCATGCAAGTTCTATTATACATAGAGT	57.571	33.333	14.21	0.00	32.81	3.24
3369	4170	8.877779	GGCATGCAAGTTCTATTATACATAGAG	58.122	37.037	21.36	0.00	32.81	2.43
3370	4171	7.824289	GGGCATGCAAGTTCTATTATACATAGA	59.176	37.037	21.36	0.00	0.00	1.98
3371	4172	7.826252	AGGGCATGCAAGTTCTATTATACATAG	59.174	37.037	21.36	0.00	0.00	2.23
3372	4173	7.689299	AGGGCATGCAAGTTCTATTATACATA	58.311	34.615	21.36	0.00	0.00	2.29
3412	4213	4.760047	CTTCTGGCCCGTGGTCCG	62.760	72.222	0.00	0.00	0.00	4.79
3490	4291	6.153510	AGCATCAGTTGTAGTCTTGTAGATGA	59.846	38.462	0.00	0.00	33.94	2.92
3491	4292	6.336566	AGCATCAGTTGTAGTCTTGTAGATG	58.663	40.000	0.00	0.00	34.89	2.90
3492	4293	6.537453	AGCATCAGTTGTAGTCTTGTAGAT	57.463	37.500	0.00	0.00	0.00	1.98
3493	4294	5.984695	AGCATCAGTTGTAGTCTTGTAGA	57.015	39.130	0.00	0.00	0.00	2.59
3494	4295	6.749578	CACTAGCATCAGTTGTAGTCTTGTAG	59.250	42.308	0.00	0.00	0.00	2.74
3495	4296	6.433093	TCACTAGCATCAGTTGTAGTCTTGTA	59.567	38.462	0.00	0.00	0.00	2.41
3496	4297	5.243954	TCACTAGCATCAGTTGTAGTCTTGT	59.756	40.000	0.00	0.00	0.00	3.16
3497	4298	5.714047	TCACTAGCATCAGTTGTAGTCTTG	58.286	41.667	0.00	0.00	0.00	3.02
3498	4299	5.984695	TCACTAGCATCAGTTGTAGTCTT	57.015	39.130	0.00	0.00	0.00	3.01
3499	4300	6.264292	CCTATCACTAGCATCAGTTGTAGTCT	59.736	42.308	0.00	0.00	0.00	3.24
3500	4301	6.442952	CCTATCACTAGCATCAGTTGTAGTC	58.557	44.000	0.00	0.00	0.00	2.59
3501	4302	5.221342	GCCTATCACTAGCATCAGTTGTAGT	60.221	44.000	0.00	0.00	0.00	2.73
3538	4339	0.539438	TGTCAAACCCCATGTCAGGC	60.539	55.000	0.00	0.00	0.00	4.85
3561	4362	5.183713	TGCTATGTCCTTTCTTTGATTGTGG	59.816	40.000	0.00	0.00	0.00	4.17
3583	4384	1.136891	ACAGCACCTTTGGAAACTTGC	59.863	47.619	0.00	0.00	0.00	4.01
3728	4579	3.134574	TGAACACTAAAGGGCGTCATT	57.865	42.857	0.00	0.00	0.00	2.57
3765	4616	2.519302	GGCAGCAACCACCACACT	60.519	61.111	0.00	0.00	0.00	3.55
3908	4759	1.344763	CTTATTCCTCCCACCCTAGCG	59.655	57.143	0.00	0.00	0.00	4.26
3909	4760	2.104963	CACTTATTCCTCCCACCCTAGC	59.895	54.545	0.00	0.00	0.00	3.42
3910	4761	2.104963	GCACTTATTCCTCCCACCCTAG	59.895	54.545	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.