Multiple sequence alignment - TraesCS1B01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G259600 chr1B 100.000 7366 0 0 1 7366 456997120 457004485 0.000000e+00 13603.0
1 TraesCS1B01G259600 chr1B 87.519 1971 203 22 2883 4840 361009457 361007517 0.000000e+00 2237.0
2 TraesCS1B01G259600 chr1B 93.039 589 31 9 4849 5432 12600097 12600680 0.000000e+00 852.0
3 TraesCS1B01G259600 chr1B 92.047 591 37 6 4848 5432 670050751 670051337 0.000000e+00 822.0
4 TraesCS1B01G259600 chr1B 96.491 114 4 0 6874 6987 533752140 533752027 9.760000e-44 189.0
5 TraesCS1B01G259600 chr1A 92.270 2031 106 23 884 2882 441020127 441022138 0.000000e+00 2833.0
6 TraesCS1B01G259600 chr1A 93.673 1454 71 15 5433 6873 441022134 441023579 0.000000e+00 2156.0
7 TraesCS1B01G259600 chr1A 92.324 482 31 3 1 481 487479370 487479846 0.000000e+00 680.0
8 TraesCS1B01G259600 chr1A 91.406 256 22 0 584 839 487480318 487480573 1.180000e-92 351.0
9 TraesCS1B01G259600 chr1A 97.273 110 3 0 6871 6980 332892773 332892882 3.510000e-43 187.0
10 TraesCS1B01G259600 chr1A 96.491 57 2 0 6980 7036 441023581 441023637 2.190000e-15 95.3
11 TraesCS1B01G259600 chr1D 94.845 1455 60 10 5433 6875 341274744 341276195 0.000000e+00 2257.0
12 TraesCS1B01G259600 chr1D 86.433 1968 231 25 2883 4837 414144742 414146686 0.000000e+00 2122.0
13 TraesCS1B01G259600 chr1D 94.714 1362 59 6 1525 2882 341273396 341274748 0.000000e+00 2104.0
14 TraesCS1B01G259600 chr1D 88.085 1796 180 11 3065 4831 443186539 443188329 0.000000e+00 2100.0
15 TraesCS1B01G259600 chr1D 92.386 591 36 6 4849 5433 300706628 300707215 0.000000e+00 833.0
16 TraesCS1B01G259600 chr1D 87.027 555 50 13 951 1495 341272856 341273398 2.270000e-169 606.0
17 TraesCS1B01G259600 chr1D 78.167 884 111 50 1 837 97223100 97223948 8.590000e-134 488.0
18 TraesCS1B01G259600 chr1D 90.698 215 12 3 7160 7366 341276393 341276607 5.630000e-71 279.0
19 TraesCS1B01G259600 chr1D 90.566 212 15 5 631 839 490010153 490009944 7.280000e-70 276.0
20 TraesCS1B01G259600 chr1D 97.248 109 3 0 6872 6980 66558409 66558301 1.260000e-42 185.0
21 TraesCS1B01G259600 chr1D 94.118 119 7 0 6872 6990 73714966 73714848 1.630000e-41 182.0
22 TraesCS1B01G259600 chr1D 94.017 117 7 0 6865 6981 11489663 11489779 2.110000e-40 178.0
23 TraesCS1B01G259600 chr1D 94.915 59 3 0 6978 7036 341276193 341276251 7.870000e-15 93.5
24 TraesCS1B01G259600 chr2D 87.036 1967 207 21 2883 4840 646577507 646575580 0.000000e+00 2176.0
25 TraesCS1B01G259600 chr2D 87.028 1827 215 18 3023 4837 472116517 472118333 0.000000e+00 2041.0
26 TraesCS1B01G259600 chr2D 94.915 118 6 0 6872 6989 71577051 71576934 1.260000e-42 185.0
27 TraesCS1B01G259600 chr2D 95.690 116 3 2 6874 6988 313224799 313224913 1.260000e-42 185.0
28 TraesCS1B01G259600 chr5B 87.434 1894 200 32 2967 4837 584252843 584250965 0.000000e+00 2145.0
29 TraesCS1B01G259600 chr5B 92.203 590 34 9 4849 5432 524539228 524539811 0.000000e+00 824.0
30 TraesCS1B01G259600 chr4A 85.895 1978 246 27 2878 4837 494631187 494633149 0.000000e+00 2076.0
31 TraesCS1B01G259600 chr3A 85.104 1967 241 31 2885 4837 584475871 584477799 0.000000e+00 1962.0
32 TraesCS1B01G259600 chr3A 84.795 342 31 4 498 839 735613879 735614199 2.560000e-84 324.0
33 TraesCS1B01G259600 chr7A 85.563 1697 217 21 2970 4656 272954477 272956155 0.000000e+00 1751.0
34 TraesCS1B01G259600 chr7A 88.804 786 78 9 4058 4840 34144045 34143267 0.000000e+00 955.0
35 TraesCS1B01G259600 chr2B 93.206 839 39 1 1 839 572262836 572262016 0.000000e+00 1218.0
36 TraesCS1B01G259600 chr2B 94.098 593 25 6 4849 5433 752874106 752873516 0.000000e+00 893.0
37 TraesCS1B01G259600 chr2B 83.333 480 71 8 1 475 665455989 665456464 1.130000e-117 435.0
38 TraesCS1B01G259600 chr2B 81.935 465 72 11 2 459 178863631 178864090 4.170000e-102 383.0
39 TraesCS1B01G259600 chr2B 96.522 115 4 0 6874 6988 171460081 171459967 2.710000e-44 191.0
40 TraesCS1B01G259600 chr5A 91.145 847 59 8 1 839 451258256 451259094 0.000000e+00 1134.0
41 TraesCS1B01G259600 chr5A 82.422 512 72 8 2883 3394 505537447 505537940 1.470000e-116 431.0
42 TraesCS1B01G259600 chr5A 88.316 291 34 0 527 817 616395283 616394993 4.230000e-92 350.0
43 TraesCS1B01G259600 chr5A 95.763 118 5 0 6873 6990 368170798 368170681 2.710000e-44 191.0
44 TraesCS1B01G259600 chr6D 88.437 787 80 8 4055 4837 68840296 68841075 0.000000e+00 939.0
45 TraesCS1B01G259600 chr6D 96.522 115 4 0 6873 6987 3196489 3196375 2.710000e-44 191.0
46 TraesCS1B01G259600 chr6D 94.262 122 6 1 6873 6993 67156427 67156548 1.260000e-42 185.0
47 TraesCS1B01G259600 chr6D 97.248 109 3 0 6873 6981 112344375 112344483 1.260000e-42 185.0
48 TraesCS1B01G259600 chr6D 96.364 110 4 0 6874 6983 2400459 2400350 1.630000e-41 182.0
49 TraesCS1B01G259600 chr6D 96.364 110 4 0 6874 6983 81674744 81674635 1.630000e-41 182.0
50 TraesCS1B01G259600 chr4D 85.409 843 91 16 1 839 37495933 37496747 0.000000e+00 846.0
51 TraesCS1B01G259600 chr4D 84.470 264 39 2 577 839 496107802 496108064 7.330000e-65 259.0
52 TraesCS1B01G259600 chr4D 95.763 118 3 2 6872 6988 160742259 160742375 9.760000e-44 189.0
53 TraesCS1B01G259600 chr4D 96.429 112 3 1 6870 6981 450206664 450206774 4.540000e-42 183.0
54 TraesCS1B01G259600 chr7D 92.530 589 34 6 4849 5432 236302060 236301477 0.000000e+00 835.0
55 TraesCS1B01G259600 chr7D 92.177 588 36 7 4849 5432 556544451 556545032 0.000000e+00 822.0
56 TraesCS1B01G259600 chr4B 92.530 589 34 8 4849 5432 5025577 5024994 0.000000e+00 835.0
57 TraesCS1B01G259600 chr4B 99.074 108 1 0 6873 6980 351634711 351634818 2.100000e-45 195.0
58 TraesCS1B01G259600 chr3B 91.906 593 37 8 4849 5435 719857179 719856592 0.000000e+00 819.0
59 TraesCS1B01G259600 chr6B 94.737 475 23 2 1 474 593360692 593361165 0.000000e+00 737.0
60 TraesCS1B01G259600 chr3D 85.466 461 55 8 1 453 577286803 577286347 3.110000e-128 470.0
61 TraesCS1B01G259600 chr3D 91.556 225 17 2 617 839 577285841 577285617 7.180000e-80 309.0
62 TraesCS1B01G259600 chr3D 96.610 118 4 0 6868 6985 460702610 460702727 5.830000e-46 196.0
63 TraesCS1B01G259600 chr3D 97.345 113 3 0 6874 6986 43587221 43587333 7.540000e-45 193.0
64 TraesCS1B01G259600 chr3D 93.966 116 7 0 6874 6989 498119003 498118888 7.600000e-40 176.0
65 TraesCS1B01G259600 chr5D 89.767 215 17 5 628 839 317721452 317721664 3.390000e-68 270.0
66 TraesCS1B01G259600 chr5D 96.330 109 3 1 6874 6982 559427822 559427715 2.110000e-40 178.0
67 TraesCS1B01G259600 chr2A 82.721 272 41 6 577 845 293968567 293968299 3.440000e-58 237.0
68 TraesCS1B01G259600 chrUn 99.074 108 1 0 6874 6981 91489014 91488907 2.100000e-45 195.0
69 TraesCS1B01G259600 chrUn 98.148 108 2 0 6873 6980 15981826 15981933 9.760000e-44 189.0
70 TraesCS1B01G259600 chrUn 97.248 109 3 0 6873 6981 267451403 267451511 1.260000e-42 185.0
71 TraesCS1B01G259600 chrUn 97.248 109 3 0 6873 6981 340254771 340254879 1.260000e-42 185.0
72 TraesCS1B01G259600 chrUn 96.296 108 4 0 6873 6980 301836921 301837028 2.110000e-40 178.0
73 TraesCS1B01G259600 chrUn 96.262 107 4 0 6874 6980 150795951 150796057 7.600000e-40 176.0
74 TraesCS1B01G259600 chrUn 94.643 112 6 0 6872 6983 77508814 77508703 2.730000e-39 174.0
75 TraesCS1B01G259600 chrUn 95.413 109 5 0 6872 6980 283389605 283389497 2.730000e-39 174.0
76 TraesCS1B01G259600 chrUn 95.370 108 5 0 6874 6981 81697126 81697233 9.830000e-39 172.0
77 TraesCS1B01G259600 chr6A 96.522 115 3 1 6866 6980 542057050 542057163 9.760000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G259600 chr1B 456997120 457004485 7365 False 13603.000000 13603 100.000000 1 7366 1 chr1B.!!$F2 7365
1 TraesCS1B01G259600 chr1B 361007517 361009457 1940 True 2237.000000 2237 87.519000 2883 4840 1 chr1B.!!$R1 1957
2 TraesCS1B01G259600 chr1B 12600097 12600680 583 False 852.000000 852 93.039000 4849 5432 1 chr1B.!!$F1 583
3 TraesCS1B01G259600 chr1B 670050751 670051337 586 False 822.000000 822 92.047000 4848 5432 1 chr1B.!!$F3 584
4 TraesCS1B01G259600 chr1A 441020127 441023637 3510 False 1694.766667 2833 94.144667 884 7036 3 chr1A.!!$F2 6152
5 TraesCS1B01G259600 chr1A 487479370 487480573 1203 False 515.500000 680 91.865000 1 839 2 chr1A.!!$F3 838
6 TraesCS1B01G259600 chr1D 414144742 414146686 1944 False 2122.000000 2122 86.433000 2883 4837 1 chr1D.!!$F4 1954
7 TraesCS1B01G259600 chr1D 443186539 443188329 1790 False 2100.000000 2100 88.085000 3065 4831 1 chr1D.!!$F5 1766
8 TraesCS1B01G259600 chr1D 341272856 341276607 3751 False 1067.900000 2257 92.439800 951 7366 5 chr1D.!!$F6 6415
9 TraesCS1B01G259600 chr1D 300706628 300707215 587 False 833.000000 833 92.386000 4849 5433 1 chr1D.!!$F3 584
10 TraesCS1B01G259600 chr1D 97223100 97223948 848 False 488.000000 488 78.167000 1 837 1 chr1D.!!$F2 836
11 TraesCS1B01G259600 chr2D 646575580 646577507 1927 True 2176.000000 2176 87.036000 2883 4840 1 chr2D.!!$R2 1957
12 TraesCS1B01G259600 chr2D 472116517 472118333 1816 False 2041.000000 2041 87.028000 3023 4837 1 chr2D.!!$F2 1814
13 TraesCS1B01G259600 chr5B 584250965 584252843 1878 True 2145.000000 2145 87.434000 2967 4837 1 chr5B.!!$R1 1870
14 TraesCS1B01G259600 chr5B 524539228 524539811 583 False 824.000000 824 92.203000 4849 5432 1 chr5B.!!$F1 583
15 TraesCS1B01G259600 chr4A 494631187 494633149 1962 False 2076.000000 2076 85.895000 2878 4837 1 chr4A.!!$F1 1959
16 TraesCS1B01G259600 chr3A 584475871 584477799 1928 False 1962.000000 1962 85.104000 2885 4837 1 chr3A.!!$F1 1952
17 TraesCS1B01G259600 chr7A 272954477 272956155 1678 False 1751.000000 1751 85.563000 2970 4656 1 chr7A.!!$F1 1686
18 TraesCS1B01G259600 chr7A 34143267 34144045 778 True 955.000000 955 88.804000 4058 4840 1 chr7A.!!$R1 782
19 TraesCS1B01G259600 chr2B 572262016 572262836 820 True 1218.000000 1218 93.206000 1 839 1 chr2B.!!$R2 838
20 TraesCS1B01G259600 chr2B 752873516 752874106 590 True 893.000000 893 94.098000 4849 5433 1 chr2B.!!$R3 584
21 TraesCS1B01G259600 chr5A 451258256 451259094 838 False 1134.000000 1134 91.145000 1 839 1 chr5A.!!$F1 838
22 TraesCS1B01G259600 chr6D 68840296 68841075 779 False 939.000000 939 88.437000 4055 4837 1 chr6D.!!$F2 782
23 TraesCS1B01G259600 chr4D 37495933 37496747 814 False 846.000000 846 85.409000 1 839 1 chr4D.!!$F1 838
24 TraesCS1B01G259600 chr7D 236301477 236302060 583 True 835.000000 835 92.530000 4849 5432 1 chr7D.!!$R1 583
25 TraesCS1B01G259600 chr7D 556544451 556545032 581 False 822.000000 822 92.177000 4849 5432 1 chr7D.!!$F1 583
26 TraesCS1B01G259600 chr4B 5024994 5025577 583 True 835.000000 835 92.530000 4849 5432 1 chr4B.!!$R1 583
27 TraesCS1B01G259600 chr3B 719856592 719857179 587 True 819.000000 819 91.906000 4849 5435 1 chr3B.!!$R1 586
28 TraesCS1B01G259600 chr3D 577285617 577286803 1186 True 389.500000 470 88.511000 1 839 2 chr3D.!!$R2 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 1638 0.170339 GCGGCTGAAGCGGTAAATTT 59.830 50.000 10.99 0.0 42.45 1.82 F
1294 2091 0.107214 CTTCCCGCTCCCTGCAATAA 60.107 55.000 0.00 0.0 43.06 1.40 F
1295 2092 0.107214 TTCCCGCTCCCTGCAATAAG 60.107 55.000 0.00 0.0 43.06 1.73 F
1518 2316 0.307760 CACAAGTTCGTTGGAGTGCC 59.692 55.000 0.00 0.0 40.90 5.01 F
3073 3896 0.463295 GTTCTAAACCCTAGCCGCCC 60.463 60.000 0.00 0.0 0.00 6.13 F
4051 4890 1.002134 CCGCCATGTGGTTCTCCTT 60.002 57.895 0.35 0.0 37.57 3.36 F
4843 5739 0.313672 GTGCGTGCCATTCCTCAAAA 59.686 50.000 0.00 0.0 0.00 2.44 F
4844 5740 1.035923 TGCGTGCCATTCCTCAAAAA 58.964 45.000 0.00 0.0 0.00 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2564 0.381801 GCACCCTGAATTACGCCATG 59.618 55.000 0.00 0.0 0.00 3.66 R
3054 3871 0.463295 GGGCGGCTAGGGTTTAGAAC 60.463 60.000 9.56 0.0 0.00 3.01 R
3106 3929 1.736586 GCGATCATGGAGACCGACT 59.263 57.895 0.00 0.0 0.00 4.18 R
3512 4341 0.940126 CGACAGCTATGATTGGCCAC 59.060 55.000 3.88 0.0 0.00 5.01 R
4544 5439 0.629596 AGAGGTCGGGGTAGATGACA 59.370 55.000 0.00 0.0 34.32 3.58 R
5435 6349 1.111277 AACCAACCAAACTCAGTGGC 58.889 50.000 0.00 0.0 40.02 5.01 R
6135 7056 0.037790 GATGTATCTCGGGCAGCCTC 60.038 60.000 12.43 0.0 0.00 4.70 R
6706 7636 2.407521 ACATACGCATAGCAGACTCG 57.592 50.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
311 315 3.027170 GACGTGGACATGCTTGGCG 62.027 63.158 0.00 5.74 0.00 5.69
413 423 0.377203 CATCAGATCGACGACCACGA 59.623 55.000 0.00 0.00 43.65 4.35
615 1395 2.203394 ACCAACCACTGCCTGCTG 60.203 61.111 0.00 0.00 0.00 4.41
845 1628 3.175240 CGACACGAGCGGCTGAAG 61.175 66.667 7.50 0.65 0.00 3.02
846 1629 3.482783 GACACGAGCGGCTGAAGC 61.483 66.667 7.50 0.00 41.14 3.86
850 1633 4.492160 CGAGCGGCTGAAGCGGTA 62.492 66.667 7.50 0.00 42.45 4.02
851 1634 2.125673 GAGCGGCTGAAGCGGTAA 60.126 61.111 7.50 0.00 42.45 2.85
852 1635 1.740296 GAGCGGCTGAAGCGGTAAA 60.740 57.895 7.50 0.00 42.45 2.01
853 1636 1.078426 AGCGGCTGAAGCGGTAAAT 60.078 52.632 0.00 0.00 42.45 1.40
854 1637 0.676782 AGCGGCTGAAGCGGTAAATT 60.677 50.000 0.00 0.00 42.45 1.82
855 1638 0.170339 GCGGCTGAAGCGGTAAATTT 59.830 50.000 10.99 0.00 42.45 1.82
856 1639 1.399089 GCGGCTGAAGCGGTAAATTTA 59.601 47.619 10.99 0.00 42.45 1.40
857 1640 2.790123 GCGGCTGAAGCGGTAAATTTAC 60.790 50.000 18.30 18.30 42.45 2.01
858 1641 2.676342 CGGCTGAAGCGGTAAATTTACT 59.324 45.455 23.89 7.76 43.26 2.24
859 1642 3.126343 CGGCTGAAGCGGTAAATTTACTT 59.874 43.478 23.89 13.13 43.26 2.24
860 1643 4.330620 CGGCTGAAGCGGTAAATTTACTTA 59.669 41.667 23.89 4.44 43.26 2.24
861 1644 5.007332 CGGCTGAAGCGGTAAATTTACTTAT 59.993 40.000 23.89 10.93 43.26 1.73
862 1645 6.457799 CGGCTGAAGCGGTAAATTTACTTATT 60.458 38.462 23.89 16.44 43.26 1.40
863 1646 6.910972 GGCTGAAGCGGTAAATTTACTTATTC 59.089 38.462 23.89 21.98 43.26 1.75
864 1647 6.627671 GCTGAAGCGGTAAATTTACTTATTCG 59.372 38.462 23.89 19.25 34.16 3.34
865 1648 7.007313 TGAAGCGGTAAATTTACTTATTCGG 57.993 36.000 23.89 6.42 34.16 4.30
866 1649 6.817641 TGAAGCGGTAAATTTACTTATTCGGA 59.182 34.615 23.89 10.29 34.16 4.55
867 1650 6.839820 AGCGGTAAATTTACTTATTCGGAG 57.160 37.500 23.89 8.69 34.16 4.63
868 1651 5.756833 AGCGGTAAATTTACTTATTCGGAGG 59.243 40.000 23.89 5.99 34.16 4.30
869 1652 5.559608 GCGGTAAATTTACTTATTCGGAGGC 60.560 44.000 23.89 10.60 34.16 4.70
870 1653 5.756833 CGGTAAATTTACTTATTCGGAGGCT 59.243 40.000 23.89 0.00 34.16 4.58
871 1654 6.292703 CGGTAAATTTACTTATTCGGAGGCTG 60.293 42.308 23.89 0.00 34.16 4.85
872 1655 5.500645 AAATTTACTTATTCGGAGGCTGC 57.499 39.130 0.00 0.00 0.00 5.25
873 1656 2.218953 TTACTTATTCGGAGGCTGCG 57.781 50.000 23.15 23.15 0.00 5.18
874 1657 0.387929 TACTTATTCGGAGGCTGCGG 59.612 55.000 27.93 13.91 0.00 5.69
875 1658 1.327690 ACTTATTCGGAGGCTGCGGA 61.328 55.000 27.93 21.39 0.00 5.54
876 1659 0.598680 CTTATTCGGAGGCTGCGGAG 60.599 60.000 27.93 16.13 0.00 4.63
877 1660 2.028125 TTATTCGGAGGCTGCGGAGG 62.028 60.000 27.93 0.00 0.00 4.30
878 1661 2.921853 TATTCGGAGGCTGCGGAGGA 62.922 60.000 27.93 9.33 0.00 3.71
879 1662 4.841617 TCGGAGGCTGCGGAGGAT 62.842 66.667 27.93 0.00 0.00 3.24
880 1663 2.912542 CGGAGGCTGCGGAGGATA 60.913 66.667 21.44 0.00 0.00 2.59
881 1664 2.737830 GGAGGCTGCGGAGGATAC 59.262 66.667 5.93 0.00 0.00 2.24
882 1665 2.336809 GAGGCTGCGGAGGATACG 59.663 66.667 5.93 0.00 46.39 3.06
897 1680 2.262471 ATACGACGACTGACCGTGCC 62.262 60.000 0.00 0.00 43.49 5.01
904 1687 0.667792 GACTGACCGTGCCAGAGTTC 60.668 60.000 0.00 0.00 35.69 3.01
906 1689 3.112709 GACCGTGCCAGAGTTCGC 61.113 66.667 0.00 0.00 0.00 4.70
914 1697 1.905922 GCCAGAGTTCGCTGTTGCTC 61.906 60.000 3.26 0.00 36.97 4.26
915 1698 0.320247 CCAGAGTTCGCTGTTGCTCT 60.320 55.000 3.26 0.00 38.69 4.09
916 1699 0.788995 CAGAGTTCGCTGTTGCTCTG 59.211 55.000 6.10 6.10 45.64 3.35
994 1788 1.079750 GAACGACAGAGAGGTGCCC 60.080 63.158 0.00 0.00 0.00 5.36
995 1789 2.508586 GAACGACAGAGAGGTGCCCC 62.509 65.000 0.00 0.00 0.00 5.80
1274 2071 2.493030 CGCCCGGGTAGTGTACTG 59.507 66.667 24.63 0.00 0.00 2.74
1275 2072 2.186125 GCCCGGGTAGTGTACTGC 59.814 66.667 24.63 0.00 0.00 4.40
1276 2073 2.356780 GCCCGGGTAGTGTACTGCT 61.357 63.158 24.63 0.00 0.00 4.24
1280 2077 0.175073 CGGGTAGTGTACTGCTTCCC 59.825 60.000 16.83 16.83 0.00 3.97
1281 2078 0.175073 GGGTAGTGTACTGCTTCCCG 59.825 60.000 13.66 0.00 0.00 5.14
1282 2079 0.459759 GGTAGTGTACTGCTTCCCGC 60.460 60.000 0.00 0.00 39.77 6.13
1284 2081 0.815734 TAGTGTACTGCTTCCCGCTC 59.184 55.000 0.00 0.00 40.11 5.03
1285 2082 1.448013 GTGTACTGCTTCCCGCTCC 60.448 63.158 0.00 0.00 40.11 4.70
1288 2085 2.359169 TACTGCTTCCCGCTCCCTG 61.359 63.158 0.00 0.00 40.11 4.45
1291 2088 4.722700 GCTTCCCGCTCCCTGCAA 62.723 66.667 0.00 0.00 43.06 4.08
1293 2090 1.526887 CTTCCCGCTCCCTGCAATA 59.473 57.895 0.00 0.00 43.06 1.90
1294 2091 0.107214 CTTCCCGCTCCCTGCAATAA 60.107 55.000 0.00 0.00 43.06 1.40
1295 2092 0.107214 TTCCCGCTCCCTGCAATAAG 60.107 55.000 0.00 0.00 43.06 1.73
1296 2093 2.189499 CCCGCTCCCTGCAATAAGC 61.189 63.158 4.26 4.26 43.06 3.09
1306 2103 3.020102 GCAATAAGCGTGGCTGTTG 57.980 52.632 10.06 10.06 39.62 3.33
1307 2104 1.072666 GCAATAAGCGTGGCTGTTGC 61.073 55.000 18.61 18.61 45.88 4.17
1309 2106 0.523072 AATAAGCGTGGCTGTTGCAG 59.477 50.000 0.00 0.00 39.62 4.41
1338 2135 2.403024 TTGCTCAGCTCGTTGCAAA 58.597 47.368 0.00 0.00 45.94 3.68
1345 2142 0.394565 AGCTCGTTGCAAAGAGGACT 59.605 50.000 33.63 23.74 45.94 3.85
1347 2144 2.037251 AGCTCGTTGCAAAGAGGACTTA 59.963 45.455 33.63 6.09 45.94 2.24
1348 2145 3.003480 GCTCGTTGCAAAGAGGACTTAT 58.997 45.455 33.63 0.00 42.31 1.73
1349 2146 3.437049 GCTCGTTGCAAAGAGGACTTATT 59.563 43.478 33.63 0.00 42.31 1.40
1350 2147 4.630069 GCTCGTTGCAAAGAGGACTTATTA 59.370 41.667 33.63 4.12 42.31 0.98
1422 2220 1.013596 CTGACGTTTGCAAGGACACA 58.986 50.000 0.00 0.00 0.00 3.72
1437 2235 4.008330 AGGACACAGAGAATGCAGATTTG 58.992 43.478 0.00 0.00 0.00 2.32
1489 2287 2.293677 AATCGTGTTCGCTAGATGCA 57.706 45.000 0.00 0.00 43.06 3.96
1518 2316 0.307760 CACAAGTTCGTTGGAGTGCC 59.692 55.000 0.00 0.00 40.90 5.01
1542 2340 4.695455 GCCATAATACAGCGACCATTACAT 59.305 41.667 0.00 0.00 0.00 2.29
1615 2419 8.646900 TGCTTTTGAATTTGTTAGAATACCCTT 58.353 29.630 0.00 0.00 0.00 3.95
1637 2441 8.391106 CCCTTCTAGTTTATGATCTTTTGTTCG 58.609 37.037 0.00 0.00 0.00 3.95
1682 2486 2.741145 ACAGGAGGGTCTGATGTACTC 58.259 52.381 0.00 0.00 38.11 2.59
1693 2499 5.288712 GGTCTGATGTACTCGTGTAAACATG 59.711 44.000 9.98 0.00 0.00 3.21
1694 2500 4.862574 TCTGATGTACTCGTGTAAACATGC 59.137 41.667 9.98 4.37 33.05 4.06
1696 2502 3.388345 TGTACTCGTGTAAACATGCCA 57.612 42.857 0.00 0.00 33.05 4.92
1697 2503 3.061322 TGTACTCGTGTAAACATGCCAC 58.939 45.455 0.00 0.00 33.05 5.01
1755 2564 3.336138 CAGTACCCCTGAAAGAACTCC 57.664 52.381 0.00 0.00 44.49 3.85
1766 2575 4.331968 TGAAAGAACTCCATGGCGTAATT 58.668 39.130 8.02 3.28 0.00 1.40
1957 2766 8.653191 TCCTTACTTTCACCTTCTGTTTACATA 58.347 33.333 0.00 0.00 0.00 2.29
1979 2788 9.396022 ACATATTGCTATTAGTTACACTGCTTT 57.604 29.630 0.00 0.00 0.00 3.51
1987 2796 4.273005 AGTTACACTGCTTTGTTTCACG 57.727 40.909 0.00 0.00 0.00 4.35
2021 2830 3.444742 TGACAACATGGGAATGATGCTTC 59.555 43.478 0.00 0.00 0.00 3.86
2042 2851 8.567948 TGCTTCAAAGGTAGTAAATTCTTTCAG 58.432 33.333 0.00 0.00 0.00 3.02
2082 2891 4.955811 ATGATGCAATGCTGATTGGAAT 57.044 36.364 6.82 0.00 42.50 3.01
2129 2938 5.926542 GGTCGCAAGTCATATCAGCTATTTA 59.073 40.000 0.00 0.00 39.48 1.40
2175 2984 1.625315 AGTACAGTGGATGAAGCAGCA 59.375 47.619 0.00 0.00 0.00 4.41
2189 2998 3.334583 AGCAGCAATTCTAGTTTCCGA 57.665 42.857 0.00 0.00 0.00 4.55
2268 3077 6.331369 TGAAGGAATGAATTGTCAAAGACC 57.669 37.500 0.00 0.00 37.30 3.85
2284 3093 3.742433 AGACCGATCAGGAAATGCTAG 57.258 47.619 10.05 0.00 45.00 3.42
2317 3126 6.599244 CAGAGGTTGCCTGAGAATAATTTGTA 59.401 38.462 0.00 0.00 31.76 2.41
2587 3396 0.734253 AGTGTGAAGCTCGCGACATC 60.734 55.000 3.71 5.85 0.00 3.06
2627 3436 7.071950 TCCTATGTATTGGCACTGGTACTTATT 59.928 37.037 0.00 0.00 0.00 1.40
2667 3476 1.267806 CAGTTGGTGTGAAGGATGTGC 59.732 52.381 0.00 0.00 0.00 4.57
2790 3600 6.073327 TGTCCTGCTAATTGATCTACTACG 57.927 41.667 0.00 0.00 0.00 3.51
2881 3691 0.878416 TTGCGTGTATGGGTTGAAGC 59.122 50.000 0.00 0.00 0.00 3.86
2899 3709 8.125448 GGTTGAAGCTGTTGAGTATATTGATTC 58.875 37.037 0.00 0.00 0.00 2.52
2900 3710 8.668353 GTTGAAGCTGTTGAGTATATTGATTCA 58.332 33.333 0.00 0.00 0.00 2.57
2998 3810 0.962356 CCCACGAGGCTCAAGCAATT 60.962 55.000 15.95 0.00 44.36 2.32
3002 3815 1.537202 ACGAGGCTCAAGCAATTCAAC 59.463 47.619 15.95 0.00 44.36 3.18
3018 3833 6.650390 GCAATTCAACAACTATTCCACCAAAT 59.350 34.615 0.00 0.00 0.00 2.32
3051 3868 7.509546 TCCCTTCTAACATGATATCAGTTTCC 58.490 38.462 19.07 0.00 0.00 3.13
3052 3869 6.425114 CCCTTCTAACATGATATCAGTTTCCG 59.575 42.308 19.07 11.83 0.00 4.30
3054 3871 5.853936 TCTAACATGATATCAGTTTCCGGG 58.146 41.667 19.07 0.00 0.00 5.73
3073 3896 0.463295 GTTCTAAACCCTAGCCGCCC 60.463 60.000 0.00 0.00 0.00 6.13
3074 3897 1.963464 TTCTAAACCCTAGCCGCCCG 61.963 60.000 0.00 0.00 0.00 6.13
3075 3898 2.684655 TAAACCCTAGCCGCCCGT 60.685 61.111 0.00 0.00 0.00 5.28
3076 3899 2.639883 CTAAACCCTAGCCGCCCGTC 62.640 65.000 0.00 0.00 0.00 4.79
3121 3944 1.690219 GGGCAGTCGGTCTCCATGAT 61.690 60.000 0.00 0.00 0.00 2.45
3195 4018 2.494530 CGGCTGCCCTAGAGAGTCC 61.495 68.421 14.12 0.00 0.00 3.85
3205 4028 3.301274 CCTAGAGAGTCCTTTTCCCGAT 58.699 50.000 0.00 0.00 0.00 4.18
3212 4036 2.642807 AGTCCTTTTCCCGATCCTTTGA 59.357 45.455 0.00 0.00 0.00 2.69
3374 4203 4.043100 TCTCCTCTGACCCGGCGA 62.043 66.667 9.30 0.00 0.00 5.54
3672 4508 4.704833 GGCTGCTCAACTCGGGCA 62.705 66.667 0.00 0.00 35.67 5.36
3784 4623 2.589540 GTCCCATGCCGTCCATCA 59.410 61.111 0.00 0.00 29.71 3.07
3785 4624 1.819632 GTCCCATGCCGTCCATCAC 60.820 63.158 0.00 0.00 29.71 3.06
3811 4650 1.039785 CCTCATCTCAGACTCCGCCA 61.040 60.000 0.00 0.00 0.00 5.69
3902 4741 3.900892 CCGCCTCATCTACGCCGT 61.901 66.667 0.00 0.00 0.00 5.68
3961 4800 1.123928 GTCCCGTGAAGATCATCCCT 58.876 55.000 0.00 0.00 0.00 4.20
3973 4812 1.078918 CATCCCTGAGTTCAGCGCA 60.079 57.895 11.47 0.00 42.47 6.09
4051 4890 1.002134 CCGCCATGTGGTTCTCCTT 60.002 57.895 0.35 0.00 37.57 3.36
4115 4955 1.284982 GCCATAGTGCCGCGATACAG 61.285 60.000 8.23 0.54 0.00 2.74
4220 5064 3.003763 GGCCCGAGGTCTTCCTGT 61.004 66.667 0.00 0.00 45.24 4.00
4263 5107 2.357517 CTGCGTTGCCTCTTCGGT 60.358 61.111 0.00 0.00 34.25 4.69
4432 5277 3.896133 CGCCGCGCTCCTAACCTA 61.896 66.667 5.56 0.00 0.00 3.08
4433 5278 2.027751 GCCGCGCTCCTAACCTAG 59.972 66.667 5.56 0.00 0.00 3.02
4434 5279 2.027751 CCGCGCTCCTAACCTAGC 59.972 66.667 5.56 0.00 35.33 3.42
4435 5280 2.027751 CGCGCTCCTAACCTAGCC 59.972 66.667 5.56 0.00 35.22 3.93
4436 5281 2.027751 GCGCTCCTAACCTAGCCG 59.972 66.667 0.00 0.00 35.22 5.52
4437 5282 2.027751 CGCTCCTAACCTAGCCGC 59.972 66.667 0.00 0.00 35.22 6.53
4438 5283 2.422165 GCTCCTAACCTAGCCGCC 59.578 66.667 0.00 0.00 32.40 6.13
4439 5284 2.728817 CTCCTAACCTAGCCGCCG 59.271 66.667 0.00 0.00 0.00 6.46
4440 5285 3.501458 CTCCTAACCTAGCCGCCGC 62.501 68.421 0.00 0.00 0.00 6.53
4561 5456 1.043673 GCTGTCATCTACCCCGACCT 61.044 60.000 0.00 0.00 0.00 3.85
4659 5554 2.364448 GGCCCCTCCGACTTCTCT 60.364 66.667 0.00 0.00 0.00 3.10
4704 5600 4.457496 CAGTCTCCGCATGCCCGT 62.457 66.667 13.15 0.00 0.00 5.28
4786 5682 1.128015 GCGCTTCGTCAACTTCGTC 59.872 57.895 0.00 0.00 0.00 4.20
4790 5686 2.124903 GCTTCGTCAACTTCGTCTTCA 58.875 47.619 0.00 0.00 0.00 3.02
4799 5695 4.398358 TCAACTTCGTCTTCATCCGTCTAT 59.602 41.667 0.00 0.00 0.00 1.98
4804 5700 2.728318 CGTCTTCATCCGTCTATGCATG 59.272 50.000 10.16 0.00 0.00 4.06
4835 5731 4.947147 ACACCGGTGCGTGCCATT 62.947 61.111 34.26 9.57 37.25 3.16
4836 5732 4.101790 CACCGGTGCGTGCCATTC 62.102 66.667 24.02 0.00 0.00 2.67
4839 5735 3.499737 CGGTGCGTGCCATTCCTC 61.500 66.667 0.00 0.00 0.00 3.71
4840 5736 2.359850 GGTGCGTGCCATTCCTCA 60.360 61.111 0.00 0.00 0.00 3.86
4841 5737 1.971167 GGTGCGTGCCATTCCTCAA 60.971 57.895 0.00 0.00 0.00 3.02
4842 5738 1.523154 GGTGCGTGCCATTCCTCAAA 61.523 55.000 0.00 0.00 0.00 2.69
4843 5739 0.313672 GTGCGTGCCATTCCTCAAAA 59.686 50.000 0.00 0.00 0.00 2.44
4844 5740 1.035923 TGCGTGCCATTCCTCAAAAA 58.964 45.000 0.00 0.00 0.00 1.94
4976 5876 3.630148 CATGCTAACTCGGCGCCG 61.630 66.667 42.13 42.13 41.35 6.46
5085 5985 3.484806 ACGGCTTCACCACCCACA 61.485 61.111 0.00 0.00 39.03 4.17
5340 6252 5.617528 TTTGTCCTACCTTGTCTTGTACA 57.382 39.130 0.00 0.00 35.88 2.90
5397 6310 3.256631 ACGAGGCTCAAGCAATTCAAAAT 59.743 39.130 15.95 0.00 44.36 1.82
5433 6347 2.927007 TCCCTCTCTCCCTTCTAACAGA 59.073 50.000 0.00 0.00 0.00 3.41
5450 6364 2.301346 CAGAAGCCACTGAGTTTGGTT 58.699 47.619 2.10 0.00 39.94 3.67
5646 6560 2.760650 AGATGACATTGGTACAGCTCGA 59.239 45.455 0.00 0.00 42.39 4.04
5654 6568 4.929819 TTGGTACAGCTCGAGCAATATA 57.070 40.909 36.87 20.35 45.16 0.86
5720 6634 5.402630 TCCATAGAATACCATCTGCCAGTA 58.597 41.667 0.00 0.00 0.00 2.74
5760 6674 5.236047 GCTTGTGCAATACTCCTATCTCAAG 59.764 44.000 0.00 0.00 39.41 3.02
5761 6675 5.939764 TGTGCAATACTCCTATCTCAAGT 57.060 39.130 0.00 0.00 0.00 3.16
6057 6978 6.486253 TTCTGTCAATTAGCATGTCAAGAC 57.514 37.500 0.00 0.00 0.00 3.01
6075 6996 5.071788 TCAAGACCAAAAGAGCTTCCTTAGA 59.928 40.000 0.00 0.00 0.00 2.10
6141 7062 2.964740 TCATCAGAAAACGAGAGGCTG 58.035 47.619 0.00 0.00 0.00 4.85
6162 7085 3.318275 TGCCCGAGATACATCAGTAGTTC 59.682 47.826 0.00 0.00 32.86 3.01
6166 7089 5.710567 CCCGAGATACATCAGTAGTTCCATA 59.289 44.000 0.00 0.00 32.86 2.74
6186 7113 6.160636 TCCATATATTCCCTACCCACAAAACA 59.839 38.462 0.00 0.00 0.00 2.83
6190 7117 3.149005 TCCCTACCCACAAAACATGTC 57.851 47.619 0.00 0.00 41.46 3.06
6376 7303 0.179702 TGGATGTGATCTGCTCCTGC 59.820 55.000 0.00 0.00 40.20 4.85
6496 7423 3.181496 GCAGTATAGAGGGCAAAGCAAAC 60.181 47.826 0.00 0.00 0.00 2.93
6530 7457 9.290988 TCTGAAATTGGCAAAGTATACTGTTTA 57.709 29.630 6.06 0.00 0.00 2.01
6560 7487 0.403271 AGAATGGAACTGGCTGTGCT 59.597 50.000 2.26 0.00 0.00 4.40
6569 7497 1.321474 CTGGCTGTGCTTGGAAAAGA 58.679 50.000 0.00 0.00 0.00 2.52
6632 7561 8.647796 TGTAGTAGACAATGGATTTATACCAGG 58.352 37.037 0.00 0.00 35.38 4.45
6735 7665 6.038161 TCTGCTATGCGTATGTAATTTTGCTT 59.962 34.615 0.00 0.00 0.00 3.91
6873 7807 2.334977 TGTGTAGGTGGATCCAGTTGT 58.665 47.619 16.81 2.31 39.02 3.32
6874 7808 3.512496 TGTGTAGGTGGATCCAGTTGTA 58.488 45.455 16.81 1.25 39.02 2.41
6875 7809 3.259876 TGTGTAGGTGGATCCAGTTGTAC 59.740 47.826 16.81 14.11 39.02 2.90
6876 7810 3.514309 GTGTAGGTGGATCCAGTTGTACT 59.486 47.826 16.81 9.20 39.02 2.73
6877 7811 3.767673 TGTAGGTGGATCCAGTTGTACTC 59.232 47.826 16.81 0.00 39.02 2.59
6878 7812 2.188817 AGGTGGATCCAGTTGTACTCC 58.811 52.381 16.81 10.29 39.02 3.85
6879 7813 1.209747 GGTGGATCCAGTTGTACTCCC 59.790 57.143 16.81 5.51 35.97 4.30
6880 7814 2.188817 GTGGATCCAGTTGTACTCCCT 58.811 52.381 16.81 0.00 0.00 4.20
6881 7815 2.168728 GTGGATCCAGTTGTACTCCCTC 59.831 54.545 16.81 0.00 0.00 4.30
6882 7816 1.763545 GGATCCAGTTGTACTCCCTCC 59.236 57.143 6.95 0.00 0.00 4.30
6883 7817 2.467880 GATCCAGTTGTACTCCCTCCA 58.532 52.381 0.00 0.00 0.00 3.86
6884 7818 2.642171 TCCAGTTGTACTCCCTCCAT 57.358 50.000 0.00 0.00 0.00 3.41
6885 7819 2.915869 TCCAGTTGTACTCCCTCCATT 58.084 47.619 0.00 0.00 0.00 3.16
6886 7820 2.838202 TCCAGTTGTACTCCCTCCATTC 59.162 50.000 0.00 0.00 0.00 2.67
6887 7821 2.418746 CCAGTTGTACTCCCTCCATTCG 60.419 54.545 0.00 0.00 0.00 3.34
6888 7822 1.831736 AGTTGTACTCCCTCCATTCGG 59.168 52.381 0.00 0.00 0.00 4.30
6889 7823 1.829222 GTTGTACTCCCTCCATTCGGA 59.171 52.381 0.00 0.00 39.79 4.55
6890 7824 2.235402 GTTGTACTCCCTCCATTCGGAA 59.765 50.000 0.00 0.00 42.21 4.30
6891 7825 2.759355 TGTACTCCCTCCATTCGGAAT 58.241 47.619 0.00 0.00 42.21 3.01
6892 7826 3.112263 TGTACTCCCTCCATTCGGAATT 58.888 45.455 0.00 0.00 42.21 2.17
6893 7827 4.291792 TGTACTCCCTCCATTCGGAATTA 58.708 43.478 0.00 0.00 42.21 1.40
6894 7828 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
6895 7829 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
6896 7830 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
6897 7831 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
6898 7832 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
6899 7833 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
6900 7834 4.384208 CCCTCCATTCGGAATTACTTGTCT 60.384 45.833 0.00 0.00 42.21 3.41
6901 7835 4.811557 CCTCCATTCGGAATTACTTGTCTC 59.188 45.833 0.00 0.00 42.21 3.36
6902 7836 4.430007 TCCATTCGGAATTACTTGTCTCG 58.570 43.478 0.00 0.00 38.83 4.04
6903 7837 3.555956 CCATTCGGAATTACTTGTCTCGG 59.444 47.826 0.00 0.00 0.00 4.63
6904 7838 4.430007 CATTCGGAATTACTTGTCTCGGA 58.570 43.478 0.00 0.00 0.00 4.55
6905 7839 4.524316 TTCGGAATTACTTGTCTCGGAA 57.476 40.909 0.00 0.00 0.00 4.30
6906 7840 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
6907 7841 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
6908 7842 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
6909 7843 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
6910 7844 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
6911 7845 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
6912 7846 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
6913 7847 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
6914 7848 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
6915 7849 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
6916 7850 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
6917 7851 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
6918 7852 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
6919 7853 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
6920 7854 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
6921 7855 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
6922 7856 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
6923 7857 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
6924 7858 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
6925 7859 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
6926 7860 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
6927 7861 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
6951 7885 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
6952 7886 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
6953 7887 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
6954 7888 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
6955 7889 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
6956 7890 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
6957 7891 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
6958 7892 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
6959 7893 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
6960 7894 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
6961 7895 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
6962 7896 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
6963 7897 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
6964 7898 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
6965 7899 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
6966 7900 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
6967 7901 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
6968 7902 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
6969 7903 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
6970 7904 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
6971 7905 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
6972 7906 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
6973 7907 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
6974 7908 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
6975 7909 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6976 7910 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6977 7911 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7008 7942 8.478877 TGTTTAGCCTTTCTTTTATTTGTTCCA 58.521 29.630 0.00 0.00 0.00 3.53
7015 7949 8.764287 CCTTTCTTTTATTTGTTCCATGTTGTC 58.236 33.333 0.00 0.00 0.00 3.18
7036 7970 9.309516 GTTGTCTACAAATTATCTGAACGGATA 57.690 33.333 0.00 0.00 37.63 2.59
7038 7972 9.878667 TGTCTACAAATTATCTGAACGGATAAA 57.121 29.630 16.58 3.50 40.25 1.40
7089 8023 7.173218 CGTAATTATCCAGTTAGTTGCATCCAT 59.827 37.037 0.00 0.00 0.00 3.41
7099 8033 3.443052 AGTTGCATCCATTGAATCCCAA 58.557 40.909 0.00 0.00 39.41 4.12
7109 8043 7.789202 TCCATTGAATCCCAACAGATAAAAA 57.211 32.000 0.00 0.00 37.63 1.94
7132 8094 3.118298 AGTTGGCATTGCAAAAGGTTTCT 60.118 39.130 11.39 0.00 0.00 2.52
7136 8098 4.237724 GGCATTGCAAAAGGTTTCTAGTC 58.762 43.478 11.39 0.00 0.00 2.59
7176 8158 7.841915 AACTAACAAAACAACAAAATCAGGG 57.158 32.000 0.00 0.00 0.00 4.45
7179 8161 6.735678 AACAAAACAACAAAATCAGGGAAC 57.264 33.333 0.00 0.00 0.00 3.62
7185 8167 6.293004 ACAACAAAATCAGGGAACTTTTCA 57.707 33.333 0.00 0.00 40.21 2.69
7210 8192 7.935338 AATTTTCAGAACAAACATAGCACTG 57.065 32.000 0.00 0.00 0.00 3.66
7217 8199 2.002586 CAAACATAGCACTGGAGTCCG 58.997 52.381 4.30 1.97 0.00 4.79
7233 8215 5.131067 GGAGTCCGAGGGCTAAAAATAATT 58.869 41.667 0.00 0.00 0.00 1.40
7237 8219 6.542735 AGTCCGAGGGCTAAAAATAATTTCTC 59.457 38.462 0.00 0.00 0.00 2.87
7274 8256 7.167468 GCCTAAATTAAGGTATTTTGATGCACG 59.833 37.037 0.00 0.00 39.02 5.34
7283 8265 3.980646 TTTTGATGCACGCTAAACAGT 57.019 38.095 0.00 0.00 0.00 3.55
7309 8291 8.498054 TTCTCAACATAAGGATCTGAATGAAC 57.502 34.615 8.17 0.00 0.00 3.18
7313 8295 7.884877 TCAACATAAGGATCTGAATGAACTGTT 59.115 33.333 0.00 0.00 0.00 3.16
7336 8318 6.978343 TGTCGGTTTAGTTATCCATTTCTG 57.022 37.500 0.00 0.00 0.00 3.02
7339 8321 7.662258 TGTCGGTTTAGTTATCCATTTCTGAAA 59.338 33.333 5.15 5.15 0.00 2.69
7340 8322 7.961283 GTCGGTTTAGTTATCCATTTCTGAAAC 59.039 37.037 4.73 0.00 0.00 2.78
7341 8323 7.662258 TCGGTTTAGTTATCCATTTCTGAAACA 59.338 33.333 4.73 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.079405 CCGGCTAAGCTCGGTTCAA 60.079 57.895 3.49 0.00 37.51 2.69
601 990 2.113986 GGTCAGCAGGCAGTGGTT 59.886 61.111 0.00 0.00 33.38 3.67
839 1622 6.627671 CGAATAAGTAAATTTACCGCTTCAGC 59.372 38.462 21.92 6.40 34.19 4.26
840 1623 7.010738 TCCGAATAAGTAAATTTACCGCTTCAG 59.989 37.037 21.92 14.44 34.19 3.02
841 1624 6.817641 TCCGAATAAGTAAATTTACCGCTTCA 59.182 34.615 21.92 7.26 34.19 3.02
842 1625 7.237920 TCCGAATAAGTAAATTTACCGCTTC 57.762 36.000 21.92 18.80 34.19 3.86
843 1626 6.259387 CCTCCGAATAAGTAAATTTACCGCTT 59.741 38.462 21.92 13.68 34.19 4.68
844 1627 5.756833 CCTCCGAATAAGTAAATTTACCGCT 59.243 40.000 21.92 11.32 34.19 5.52
845 1628 5.559608 GCCTCCGAATAAGTAAATTTACCGC 60.560 44.000 21.92 8.50 34.19 5.68
846 1629 5.756833 AGCCTCCGAATAAGTAAATTTACCG 59.243 40.000 21.92 17.32 34.19 4.02
847 1630 6.512903 GCAGCCTCCGAATAAGTAAATTTACC 60.513 42.308 21.92 7.84 34.19 2.85
848 1631 6.427974 GCAGCCTCCGAATAAGTAAATTTAC 58.572 40.000 18.77 18.77 0.00 2.01
849 1632 5.235616 CGCAGCCTCCGAATAAGTAAATTTA 59.764 40.000 0.00 0.00 0.00 1.40
850 1633 4.035208 CGCAGCCTCCGAATAAGTAAATTT 59.965 41.667 0.00 0.00 0.00 1.82
851 1634 3.560068 CGCAGCCTCCGAATAAGTAAATT 59.440 43.478 0.00 0.00 0.00 1.82
852 1635 3.131396 CGCAGCCTCCGAATAAGTAAAT 58.869 45.455 0.00 0.00 0.00 1.40
853 1636 2.546778 CGCAGCCTCCGAATAAGTAAA 58.453 47.619 0.00 0.00 0.00 2.01
854 1637 1.202486 CCGCAGCCTCCGAATAAGTAA 60.202 52.381 0.00 0.00 0.00 2.24
855 1638 0.387929 CCGCAGCCTCCGAATAAGTA 59.612 55.000 0.00 0.00 0.00 2.24
856 1639 1.144057 CCGCAGCCTCCGAATAAGT 59.856 57.895 0.00 0.00 0.00 2.24
857 1640 0.598680 CTCCGCAGCCTCCGAATAAG 60.599 60.000 0.00 0.00 0.00 1.73
858 1641 1.441729 CTCCGCAGCCTCCGAATAA 59.558 57.895 0.00 0.00 0.00 1.40
859 1642 2.498941 CCTCCGCAGCCTCCGAATA 61.499 63.158 0.00 0.00 0.00 1.75
860 1643 3.854669 CCTCCGCAGCCTCCGAAT 61.855 66.667 0.00 0.00 0.00 3.34
861 1644 2.921853 TATCCTCCGCAGCCTCCGAA 62.922 60.000 0.00 0.00 0.00 4.30
862 1645 3.430907 TATCCTCCGCAGCCTCCGA 62.431 63.158 0.00 0.00 0.00 4.55
863 1646 2.912542 TATCCTCCGCAGCCTCCG 60.913 66.667 0.00 0.00 0.00 4.63
864 1647 2.737830 GTATCCTCCGCAGCCTCC 59.262 66.667 0.00 0.00 0.00 4.30
865 1648 2.194212 TCGTATCCTCCGCAGCCTC 61.194 63.158 0.00 0.00 0.00 4.70
866 1649 2.123854 TCGTATCCTCCGCAGCCT 60.124 61.111 0.00 0.00 0.00 4.58
867 1650 2.027751 GTCGTATCCTCCGCAGCC 59.972 66.667 0.00 0.00 0.00 4.85
868 1651 2.353607 CGTCGTATCCTCCGCAGC 60.354 66.667 0.00 0.00 0.00 5.25
869 1652 1.009900 GTCGTCGTATCCTCCGCAG 60.010 63.158 0.00 0.00 0.00 5.18
870 1653 1.450848 AGTCGTCGTATCCTCCGCA 60.451 57.895 0.00 0.00 0.00 5.69
871 1654 1.009900 CAGTCGTCGTATCCTCCGC 60.010 63.158 0.00 0.00 0.00 5.54
872 1655 0.304098 GTCAGTCGTCGTATCCTCCG 59.696 60.000 0.00 0.00 0.00 4.63
873 1656 0.662085 GGTCAGTCGTCGTATCCTCC 59.338 60.000 0.00 0.00 0.00 4.30
874 1657 0.304098 CGGTCAGTCGTCGTATCCTC 59.696 60.000 0.00 0.00 0.00 3.71
875 1658 0.392193 ACGGTCAGTCGTCGTATCCT 60.392 55.000 0.00 0.00 39.34 3.24
876 1659 0.247974 CACGGTCAGTCGTCGTATCC 60.248 60.000 0.00 0.00 41.86 2.59
877 1660 0.860618 GCACGGTCAGTCGTCGTATC 60.861 60.000 0.00 0.00 41.86 2.24
878 1661 1.136147 GCACGGTCAGTCGTCGTAT 59.864 57.895 0.00 0.00 41.86 3.06
879 1662 2.557805 GCACGGTCAGTCGTCGTA 59.442 61.111 0.00 0.00 41.86 3.43
880 1663 4.338539 GGCACGGTCAGTCGTCGT 62.339 66.667 0.00 0.00 41.86 4.34
881 1664 4.337060 TGGCACGGTCAGTCGTCG 62.337 66.667 0.00 0.00 41.86 5.12
882 1665 2.430921 CTGGCACGGTCAGTCGTC 60.431 66.667 0.00 0.00 41.86 4.20
897 1680 3.207677 AGAGCAACAGCGAACTCTG 57.792 52.632 0.00 0.00 38.07 3.35
904 1687 0.657312 TGTTTGTCAGAGCAACAGCG 59.343 50.000 0.00 0.00 0.00 5.18
906 1689 3.374988 TCTTGTGTTTGTCAGAGCAACAG 59.625 43.478 0.00 0.00 0.00 3.16
914 1697 1.528586 CTCGGCTCTTGTGTTTGTCAG 59.471 52.381 0.00 0.00 0.00 3.51
915 1698 1.134521 ACTCGGCTCTTGTGTTTGTCA 60.135 47.619 0.00 0.00 0.00 3.58
916 1699 1.583054 ACTCGGCTCTTGTGTTTGTC 58.417 50.000 0.00 0.00 0.00 3.18
1260 2057 0.175073 GGAAGCAGTACACTACCCGG 59.825 60.000 0.00 0.00 0.00 5.73
1281 2078 1.718757 CCACGCTTATTGCAGGGAGC 61.719 60.000 7.08 7.08 43.06 4.70
1282 2079 1.718757 GCCACGCTTATTGCAGGGAG 61.719 60.000 0.00 0.00 43.06 4.30
1284 2081 1.750399 AGCCACGCTTATTGCAGGG 60.750 57.895 0.00 0.00 43.06 4.45
1285 2082 1.308069 ACAGCCACGCTTATTGCAGG 61.308 55.000 0.00 0.00 43.06 4.85
1288 2085 1.072666 GCAACAGCCACGCTTATTGC 61.073 55.000 13.62 13.62 36.40 3.56
1289 2086 0.240678 TGCAACAGCCACGCTTATTG 59.759 50.000 0.00 3.92 36.40 1.90
1290 2087 0.523072 CTGCAACAGCCACGCTTATT 59.477 50.000 0.00 0.00 36.40 1.40
1291 2088 2.174334 CTGCAACAGCCACGCTTAT 58.826 52.632 0.00 0.00 36.40 1.73
1317 2114 0.737804 TGCAACGAGCTGAGCAAAAA 59.262 45.000 7.39 0.00 45.94 1.94
1318 2115 0.737804 TTGCAACGAGCTGAGCAAAA 59.262 45.000 7.39 0.00 43.24 2.44
1322 2119 0.165511 CTCTTTGCAACGAGCTGAGC 59.834 55.000 18.69 0.00 45.94 4.26
1325 2122 0.514691 GTCCTCTTTGCAACGAGCTG 59.485 55.000 23.73 13.44 45.94 4.24
1422 2220 6.207025 GCCTCATTATCAAATCTGCATTCTCT 59.793 38.462 0.00 0.00 0.00 3.10
1437 2235 0.886490 CCAGCACCCGCCTCATTATC 60.886 60.000 0.00 0.00 39.83 1.75
1489 2287 6.568869 TCCAACGAACTTGTGAAAAATTCAT 58.431 32.000 0.00 0.00 42.47 2.57
1518 2316 8.513225 CATGTAATGGTCGCTGTATTATGGCG 62.513 46.154 0.00 0.00 44.60 5.69
1542 2340 0.762418 CCACACCTGGTCCTGTTACA 59.238 55.000 0.00 0.00 32.03 2.41
1568 2367 0.323178 CAGATTCAGCAACCCTGGCT 60.323 55.000 0.00 0.00 43.77 4.75
1755 2564 0.381801 GCACCCTGAATTACGCCATG 59.618 55.000 0.00 0.00 0.00 3.66
1766 2575 2.329267 CTATATGTCCCTGCACCCTGA 58.671 52.381 0.00 0.00 0.00 3.86
1808 2617 9.077674 CAGAACTGAATACATACAAGTCTACAC 57.922 37.037 0.00 0.00 0.00 2.90
1847 2656 3.942829 TGTAGATGCAGAAGGGTGAAAG 58.057 45.455 0.00 0.00 0.00 2.62
1937 2746 7.820648 AGCAATATGTAAACAGAAGGTGAAAG 58.179 34.615 0.00 0.00 0.00 2.62
2001 2810 3.433343 TGAAGCATCATTCCCATGTTGT 58.567 40.909 0.00 0.00 33.97 3.32
2021 2830 7.391833 AGCTCCTGAAAGAATTTACTACCTTTG 59.608 37.037 0.00 0.00 39.27 2.77
2042 2851 8.352201 TGCATCATATGTTAAAATACAAGCTCC 58.648 33.333 1.90 0.00 0.00 4.70
2143 2952 8.084985 TCATCCACTGTACTTGGAACATATTA 57.915 34.615 17.53 0.00 46.37 0.98
2268 3077 4.437239 ACAACTCTAGCATTTCCTGATCG 58.563 43.478 0.00 0.00 0.00 3.69
2284 3093 2.037251 TCAGGCAACCTCTGTACAACTC 59.963 50.000 0.00 0.00 34.15 3.01
2587 3396 7.012704 CCAATACATAGGACCTCATTGACAAAG 59.987 40.741 0.00 0.00 0.00 2.77
2600 3409 3.560636 ACCAGTGCCAATACATAGGAC 57.439 47.619 0.00 0.00 0.00 3.85
2627 3436 7.362315 CCAACTGAAGAGAAACAATATGATGCA 60.362 37.037 0.00 0.00 0.00 3.96
2667 3476 7.927048 ACGCTTTGTATTTAATTAGCCCTAAG 58.073 34.615 0.00 0.00 0.00 2.18
2728 3538 7.783596 AGTTAGGGTTATCGGAGAAAAGATCTA 59.216 37.037 0.00 0.00 43.58 1.98
2998 3810 4.770010 GGGATTTGGTGGAATAGTTGTTGA 59.230 41.667 0.00 0.00 0.00 3.18
3002 3815 4.860022 AGAGGGATTTGGTGGAATAGTTG 58.140 43.478 0.00 0.00 0.00 3.16
3018 3833 3.272285 TCATGTTAGAAGGGAGAGAGGGA 59.728 47.826 0.00 0.00 0.00 4.20
3054 3871 0.463295 GGGCGGCTAGGGTTTAGAAC 60.463 60.000 9.56 0.00 0.00 3.01
3101 3924 3.461773 ATGGAGACCGACTGCCCG 61.462 66.667 0.00 0.00 36.08 6.13
3106 3929 1.736586 GCGATCATGGAGACCGACT 59.263 57.895 0.00 0.00 0.00 4.18
3512 4341 0.940126 CGACAGCTATGATTGGCCAC 59.060 55.000 3.88 0.00 0.00 5.01
3540 4369 1.906824 GGATCGATGGGTAGGCCGA 60.907 63.158 0.54 0.00 34.97 5.54
3547 4376 1.515954 GTGACGTGGATCGATGGGT 59.484 57.895 0.54 0.00 42.86 4.51
3672 4508 4.681978 GACCAACGGAGCAGCGGT 62.682 66.667 0.00 0.00 0.00 5.68
3734 4573 3.832237 CTTGTCAGCACCGGCACCT 62.832 63.158 0.00 0.00 44.61 4.00
3785 4624 4.598894 CTGAGATGAGGCCGGCGG 62.599 72.222 24.35 24.35 0.00 6.13
3822 4661 4.996434 GGGATGCCGCTCGATGGG 62.996 72.222 6.03 2.04 0.00 4.00
3961 4800 3.240134 GAGGGGTGCGCTGAACTCA 62.240 63.158 9.73 0.00 0.00 3.41
3973 4812 2.442272 CTCGATCGGTGGAGGGGT 60.442 66.667 16.41 0.00 0.00 4.95
4214 5058 2.599281 TCAGGGCGACGACAGGAA 60.599 61.111 1.63 0.00 0.00 3.36
4215 5059 3.371063 GTCAGGGCGACGACAGGA 61.371 66.667 1.63 0.00 34.19 3.86
4256 5100 3.818787 GGCGCTACGGACCGAAGA 61.819 66.667 23.38 4.22 0.00 2.87
4421 5266 2.422165 GGCGGCTAGGTTAGGAGC 59.578 66.667 0.00 0.00 38.00 4.70
4422 5267 2.728817 CGGCGGCTAGGTTAGGAG 59.271 66.667 7.61 0.00 0.00 3.69
4423 5268 3.534056 GCGGCGGCTAGGTTAGGA 61.534 66.667 9.78 0.00 35.83 2.94
4424 5269 4.603946 GGCGGCGGCTAGGTTAGG 62.604 72.222 27.22 0.00 39.81 2.69
4425 5270 4.944372 CGGCGGCGGCTAGGTTAG 62.944 72.222 30.65 9.91 39.81 2.34
4438 5283 4.152625 CAAAGAAGAGCGGCGGCG 62.153 66.667 28.70 28.70 46.35 6.46
4439 5284 3.804193 CCAAAGAAGAGCGGCGGC 61.804 66.667 9.78 8.43 40.37 6.53
4440 5285 3.804193 GCCAAAGAAGAGCGGCGG 61.804 66.667 9.78 0.00 34.26 6.13
4544 5439 0.629596 AGAGGTCGGGGTAGATGACA 59.370 55.000 0.00 0.00 34.32 3.58
4561 5456 1.446907 GTGGTCGGAGTAGACGAAGA 58.553 55.000 0.00 0.00 42.55 2.87
4659 5554 1.870402 CACAAGTTGTACGCCATGTCA 59.130 47.619 8.49 0.00 0.00 3.58
4704 5600 3.594775 CAGCGGTGTTGCCAGCAA 61.595 61.111 6.41 0.00 39.05 3.91
4786 5682 1.802960 GGCATGCATAGACGGATGAAG 59.197 52.381 21.36 0.00 36.90 3.02
4790 5686 1.004560 CGGGCATGCATAGACGGAT 60.005 57.895 21.36 0.00 0.00 4.18
4845 5741 2.103340 GCACGCACCGGTGTTTTT 59.897 55.556 33.92 14.28 40.08 1.94
4846 5742 3.894947 GGCACGCACCGGTGTTTT 61.895 61.111 33.92 16.81 40.08 2.43
4909 5805 2.346803 CGGGAAGATGTTGTTGACGAT 58.653 47.619 0.00 0.00 0.00 3.73
5102 6002 1.154197 GGTAGCCCTTTGTGTCGTTC 58.846 55.000 0.00 0.00 0.00 3.95
5200 6110 1.895020 AAGGCAAGCCGACGGACATA 61.895 55.000 20.50 0.00 41.95 2.29
5201 6111 3.254024 AAGGCAAGCCGACGGACAT 62.254 57.895 20.50 0.00 41.95 3.06
5397 6310 5.538877 AGAGAGGGATTTGGTGGAATAGTA 58.461 41.667 0.00 0.00 0.00 1.82
5433 6347 1.341976 ACCAACCAAACTCAGTGGCTT 60.342 47.619 0.00 0.00 40.02 4.35
5435 6349 1.111277 AACCAACCAAACTCAGTGGC 58.889 50.000 0.00 0.00 40.02 5.01
5450 6364 6.434652 TGTTAACTCTCAAAACAAGGAAACCA 59.565 34.615 7.22 0.00 30.54 3.67
5646 6560 7.573710 TGTTCAACCTACCTTGATATATTGCT 58.426 34.615 0.00 0.00 30.19 3.91
5654 6568 3.763897 GGCAATGTTCAACCTACCTTGAT 59.236 43.478 0.00 0.00 30.19 2.57
5704 6618 6.260936 CGAAGAATTTACTGGCAGATGGTATT 59.739 38.462 23.66 12.26 0.00 1.89
5708 6622 3.242870 GCGAAGAATTTACTGGCAGATGG 60.243 47.826 23.66 0.00 0.00 3.51
5785 6699 8.566109 ACCATTACCTGAAAAATAGAAGGGTAT 58.434 33.333 0.00 0.00 33.87 2.73
5793 6707 6.978343 TCGTCACCATTACCTGAAAAATAG 57.022 37.500 0.00 0.00 0.00 1.73
5995 6912 5.714806 TGAAATGTGGAATTAGAGGAAACCC 59.285 40.000 0.00 0.00 0.00 4.11
6057 6978 4.508662 ACGATCTAAGGAAGCTCTTTTGG 58.491 43.478 0.00 0.00 0.00 3.28
6075 6996 4.036734 ACAATGTTTCACTTGCAAGACGAT 59.963 37.500 32.50 7.52 0.00 3.73
6135 7056 0.037790 GATGTATCTCGGGCAGCCTC 60.038 60.000 12.43 0.00 0.00 4.70
6141 7062 3.305471 GGAACTACTGATGTATCTCGGGC 60.305 52.174 0.00 0.00 0.00 6.13
6162 7085 6.369629 TGTTTTGTGGGTAGGGAATATATGG 58.630 40.000 0.00 0.00 0.00 2.74
6166 7089 5.837829 ACATGTTTTGTGGGTAGGGAATAT 58.162 37.500 0.00 0.00 37.11 1.28
6186 7113 4.286813 TGGGGAAGAGAGATTAGGACAT 57.713 45.455 0.00 0.00 0.00 3.06
6190 7117 3.749226 GCATTGGGGAAGAGAGATTAGG 58.251 50.000 0.00 0.00 0.00 2.69
6530 7457 6.891908 AGCCAGTTCCATTCTATACACAAAAT 59.108 34.615 0.00 0.00 0.00 1.82
6560 7487 7.039784 CCACTATGAATTTCTGGTCTTTTCCAA 60.040 37.037 0.00 0.00 37.01 3.53
6569 7497 5.640147 TGAAACCCACTATGAATTTCTGGT 58.360 37.500 0.00 0.00 31.86 4.00
6607 7536 8.867097 TCCTGGTATAAATCCATTGTCTACTAC 58.133 37.037 0.00 0.00 34.26 2.73
6689 7618 3.727726 ACTCGAACATTGACATGTGTGA 58.272 40.909 1.15 0.00 43.34 3.58
6690 7619 3.742882 AGACTCGAACATTGACATGTGTG 59.257 43.478 1.15 1.69 43.34 3.82
6691 7620 3.742882 CAGACTCGAACATTGACATGTGT 59.257 43.478 1.15 0.00 43.34 3.72
6692 7621 3.424039 GCAGACTCGAACATTGACATGTG 60.424 47.826 1.15 0.00 43.34 3.21
6693 7622 2.738846 GCAGACTCGAACATTGACATGT 59.261 45.455 0.00 0.00 46.34 3.21
6706 7636 2.407521 ACATACGCATAGCAGACTCG 57.592 50.000 0.00 0.00 0.00 4.18
6735 7665 8.885494 AGAGCACAAAACTTATTATTTTTGCA 57.115 26.923 10.73 0.00 43.54 4.08
6772 7703 6.536447 TCATTTTTCCCCGTACTAACTTCTT 58.464 36.000 0.00 0.00 0.00 2.52
6774 7705 6.997239 ATCATTTTTCCCCGTACTAACTTC 57.003 37.500 0.00 0.00 0.00 3.01
6784 7715 4.799564 TCCAAGAAATCATTTTTCCCCG 57.200 40.909 0.00 0.00 0.00 5.73
6785 7716 8.408043 AAAAATCCAAGAAATCATTTTTCCCC 57.592 30.769 0.00 0.00 34.73 4.81
6834 7768 6.515272 ACACATGGATGGACAGTAAAAATC 57.485 37.500 0.00 0.00 0.00 2.17
6835 7769 6.603201 CCTACACATGGATGGACAGTAAAAAT 59.397 38.462 0.00 0.00 0.00 1.82
6836 7770 5.943416 CCTACACATGGATGGACAGTAAAAA 59.057 40.000 0.00 0.00 0.00 1.94
6880 7814 4.430007 CGAGACAAGTAATTCCGAATGGA 58.570 43.478 0.00 0.00 44.61 3.41
6881 7815 3.555956 CCGAGACAAGTAATTCCGAATGG 59.444 47.826 0.00 0.00 0.00 3.16
6882 7816 4.430007 TCCGAGACAAGTAATTCCGAATG 58.570 43.478 0.00 0.00 0.00 2.67
6883 7817 4.730949 TCCGAGACAAGTAATTCCGAAT 57.269 40.909 0.00 0.00 0.00 3.34
6884 7818 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
6885 7819 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
6886 7820 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
6887 7821 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
6888 7822 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
6889 7823 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
6890 7824 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
6891 7825 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
6892 7826 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
6893 7827 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
6894 7828 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
6895 7829 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
6896 7830 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
6897 7831 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
6898 7832 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
6899 7833 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
6900 7834 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
6901 7835 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
6925 7859 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
6926 7860 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
6927 7861 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
6928 7862 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
6929 7863 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
6930 7864 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
6931 7865 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
6932 7866 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
6933 7867 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
6934 7868 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
6935 7869 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
6936 7870 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
6937 7871 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
6938 7872 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
6939 7873 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
6940 7874 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
6941 7875 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
6942 7876 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
6943 7877 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
6944 7878 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
6945 7879 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
6946 7880 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
6947 7881 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
6948 7882 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
6949 7883 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
6950 7884 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
6951 7885 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
6952 7886 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
6953 7887 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6954 7888 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6955 7889 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6956 7890 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6957 7891 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6958 7892 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6959 7893 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6960 7894 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
6961 7895 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
6962 7896 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
6963 7897 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
6964 7898 1.379576 ACCTACTCCCTCCGTTCGG 60.380 63.158 4.74 4.74 0.00 4.30
6965 7899 0.964358 ACACCTACTCCCTCCGTTCG 60.964 60.000 0.00 0.00 0.00 3.95
6966 7900 1.264295 AACACCTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
6967 7901 1.725803 AAACACCTACTCCCTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
6968 7902 2.454538 CTAAACACCTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
6969 7903 1.136500 GCTAAACACCTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
6970 7904 1.485480 GGCTAAACACCTACTCCCTCC 59.515 57.143 0.00 0.00 0.00 4.30
6971 7905 2.468915 AGGCTAAACACCTACTCCCTC 58.531 52.381 0.00 0.00 35.10 4.30
6972 7906 2.644060 AGGCTAAACACCTACTCCCT 57.356 50.000 0.00 0.00 35.10 4.20
6973 7907 3.263681 AGAAAGGCTAAACACCTACTCCC 59.736 47.826 0.00 0.00 36.14 4.30
6974 7908 4.554960 AGAAAGGCTAAACACCTACTCC 57.445 45.455 0.00 0.00 36.14 3.85
6975 7909 6.879276 AAAAGAAAGGCTAAACACCTACTC 57.121 37.500 0.00 0.00 36.14 2.59
6976 7910 8.935614 AATAAAAGAAAGGCTAAACACCTACT 57.064 30.769 0.00 0.00 36.14 2.57
6977 7911 9.406828 CAAATAAAAGAAAGGCTAAACACCTAC 57.593 33.333 0.00 0.00 36.14 3.18
7008 7942 7.822334 TCCGTTCAGATAATTTGTAGACAACAT 59.178 33.333 0.00 0.00 38.10 2.71
7057 7991 8.823818 GCAACTAACTGGATAATTACGTACATT 58.176 33.333 0.00 1.73 0.00 2.71
7058 7992 7.982919 TGCAACTAACTGGATAATTACGTACAT 59.017 33.333 0.00 0.00 0.00 2.29
7059 7993 7.321908 TGCAACTAACTGGATAATTACGTACA 58.678 34.615 0.00 0.00 0.00 2.90
7060 7994 7.760131 TGCAACTAACTGGATAATTACGTAC 57.240 36.000 0.00 0.00 0.00 3.67
7061 7995 7.654520 GGATGCAACTAACTGGATAATTACGTA 59.345 37.037 0.00 0.00 0.00 3.57
7062 7996 6.482308 GGATGCAACTAACTGGATAATTACGT 59.518 38.462 0.00 0.00 0.00 3.57
7063 7997 6.481976 TGGATGCAACTAACTGGATAATTACG 59.518 38.462 0.00 0.00 0.00 3.18
7064 7998 7.801716 TGGATGCAACTAACTGGATAATTAC 57.198 36.000 0.00 0.00 0.00 1.89
7065 7999 8.849168 CAATGGATGCAACTAACTGGATAATTA 58.151 33.333 0.00 0.00 0.00 1.40
7066 8000 7.560991 TCAATGGATGCAACTAACTGGATAATT 59.439 33.333 0.00 0.00 0.00 1.40
7067 8001 7.062322 TCAATGGATGCAACTAACTGGATAAT 58.938 34.615 0.00 0.00 0.00 1.28
7068 8002 6.422333 TCAATGGATGCAACTAACTGGATAA 58.578 36.000 0.00 0.00 0.00 1.75
7069 8003 6.000246 TCAATGGATGCAACTAACTGGATA 58.000 37.500 0.00 0.00 0.00 2.59
7070 8004 4.858850 TCAATGGATGCAACTAACTGGAT 58.141 39.130 0.00 0.00 0.00 3.41
7071 8005 4.299586 TCAATGGATGCAACTAACTGGA 57.700 40.909 0.00 0.00 0.00 3.86
7072 8006 5.450965 GGATTCAATGGATGCAACTAACTGG 60.451 44.000 0.00 0.00 0.00 4.00
7073 8007 5.450965 GGGATTCAATGGATGCAACTAACTG 60.451 44.000 0.00 0.00 0.00 3.16
7074 8008 4.646492 GGGATTCAATGGATGCAACTAACT 59.354 41.667 0.00 0.00 0.00 2.24
7075 8009 4.402155 TGGGATTCAATGGATGCAACTAAC 59.598 41.667 0.00 0.00 0.00 2.34
7076 8010 4.608269 TGGGATTCAATGGATGCAACTAA 58.392 39.130 0.00 0.00 0.00 2.24
7079 8013 3.055963 TGTTGGGATTCAATGGATGCAAC 60.056 43.478 0.00 0.00 37.73 4.17
7109 8043 3.280197 AACCTTTTGCAATGCCAACTT 57.720 38.095 1.53 0.00 0.00 2.66
7111 8045 3.205338 AGAAACCTTTTGCAATGCCAAC 58.795 40.909 1.53 0.00 0.00 3.77
7119 8081 8.637986 ACATTAATTGACTAGAAACCTTTTGCA 58.362 29.630 0.00 0.00 0.00 4.08
7154 8116 7.763985 AGTTCCCTGATTTTGTTGTTTTGTTAG 59.236 33.333 0.00 0.00 0.00 2.34
7163 8145 7.608308 TTTGAAAAGTTCCCTGATTTTGTTG 57.392 32.000 0.00 0.00 0.00 3.33
7185 8167 7.439056 CCAGTGCTATGTTTGTTCTGAAAATTT 59.561 33.333 0.00 0.00 0.00 1.82
7210 8192 2.711978 ATTTTTAGCCCTCGGACTCC 57.288 50.000 0.00 0.00 0.00 3.85
7274 8256 7.435068 TCCTTATGTTGAGAAACTGTTTAGC 57.565 36.000 5.64 2.12 0.00 3.09
7283 8265 8.950210 GTTCATTCAGATCCTTATGTTGAGAAA 58.050 33.333 0.00 0.00 0.00 2.52
7309 8291 6.737254 AATGGATAACTAAACCGACAACAG 57.263 37.500 0.00 0.00 0.00 3.16
7313 8295 6.703319 TCAGAAATGGATAACTAAACCGACA 58.297 36.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.