Multiple sequence alignment - TraesCS1B01G259200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G259200 chr1B 100.000 4370 0 0 1 4370 456715159 456710790 0.000000e+00 8070.0
1 TraesCS1B01G259200 chr1B 92.846 2516 169 6 938 3444 642701445 642698932 0.000000e+00 3639.0
2 TraesCS1B01G259200 chr1B 87.833 263 21 10 4114 4370 489918605 489918862 9.190000e-77 298.0
3 TraesCS1B01G259200 chr1B 92.920 113 8 0 4114 4226 666837316 666837428 9.720000e-37 165.0
4 TraesCS1B01G259200 chr1B 79.916 239 25 15 4114 4329 352457864 352457626 2.100000e-33 154.0
5 TraesCS1B01G259200 chr1B 83.784 111 18 0 4114 4224 639091477 639091587 5.980000e-19 106.0
6 TraesCS1B01G259200 chr1D 94.326 3754 109 30 413 4115 341030464 341026764 0.000000e+00 5657.0
7 TraesCS1B01G259200 chr1D 93.124 2516 162 8 938 3444 465903106 465900593 0.000000e+00 3677.0
8 TraesCS1B01G259200 chr1D 86.234 385 45 7 1 382 336359866 336360245 1.130000e-110 411.0
9 TraesCS1B01G259200 chr3B 92.860 2689 149 19 842 3504 146982530 146979859 0.000000e+00 3862.0
10 TraesCS1B01G259200 chr3B 92.444 2713 161 12 803 3497 172981925 172979239 0.000000e+00 3834.0
11 TraesCS1B01G259200 chr3B 89.223 3090 250 43 382 3427 172091829 172094879 0.000000e+00 3784.0
12 TraesCS1B01G259200 chr3B 92.578 2614 167 14 837 3427 172052070 172054679 0.000000e+00 3727.0
13 TraesCS1B01G259200 chr3B 93.200 2500 156 6 938 3427 172170543 172173038 0.000000e+00 3663.0
14 TraesCS1B01G259200 chr3B 86.620 284 18 7 382 651 172982244 172981967 3.300000e-76 296.0
15 TraesCS1B01G259200 chr3B 83.408 223 27 9 4139 4357 542505893 542505677 9.590000e-47 198.0
16 TraesCS1B01G259200 chr3B 84.656 189 14 7 3577 3754 172055014 172055198 1.620000e-39 174.0
17 TraesCS1B01G259200 chr3B 84.656 189 14 7 3577 3754 172173373 172173557 1.620000e-39 174.0
18 TraesCS1B01G259200 chr3B 83.871 186 16 12 4193 4370 726124936 726125115 9.720000e-37 165.0
19 TraesCS1B01G259200 chr3B 80.455 220 25 8 4114 4328 692133296 692133090 7.570000e-33 152.0
20 TraesCS1B01G259200 chr3D 92.654 2641 168 12 845 3464 121268889 121266254 0.000000e+00 3779.0
21 TraesCS1B01G259200 chr3D 92.171 2644 181 13 842 3464 121334847 121332209 0.000000e+00 3712.0
22 TraesCS1B01G259200 chr3D 92.368 2568 175 9 938 3504 120142523 120145070 0.000000e+00 3637.0
23 TraesCS1B01G259200 chr3D 89.527 296 13 7 382 665 121269418 121269129 4.160000e-95 359.0
24 TraesCS1B01G259200 chr3D 85.612 278 19 12 4114 4370 590285497 590285774 5.570000e-69 272.0
25 TraesCS1B01G259200 chr3D 93.103 58 3 1 837 893 120124777 120124834 2.800000e-12 84.2
26 TraesCS1B01G259200 chr3A 93.538 2507 153 5 938 3438 127858894 127856391 0.000000e+00 3723.0
27 TraesCS1B01G259200 chr3A 87.500 384 40 5 1 381 580644851 580645229 1.870000e-118 436.0
28 TraesCS1B01G259200 chr3A 85.801 331 30 13 842 1156 127066250 127066579 7.000000e-88 335.0
29 TraesCS1B01G259200 chr3A 83.333 210 18 8 3577 3773 127856437 127856232 1.250000e-40 178.0
30 TraesCS1B01G259200 chr3A 80.952 126 21 3 4114 4238 642028318 642028441 3.600000e-16 97.1
31 TraesCS1B01G259200 chr6D 91.701 2675 176 25 930 3562 452127983 452125313 0.000000e+00 3668.0
32 TraesCS1B01G259200 chr6D 88.406 345 34 5 42 383 68688827 68688486 1.130000e-110 411.0
33 TraesCS1B01G259200 chr1A 93.739 1134 40 8 803 1916 440780657 440779535 0.000000e+00 1672.0
34 TraesCS1B01G259200 chr1A 94.273 227 10 1 580 803 440780913 440780687 1.160000e-90 344.0
35 TraesCS1B01G259200 chr1A 85.427 199 8 10 3937 4115 440711798 440711601 2.080000e-43 187.0
36 TraesCS1B01G259200 chr1A 95.614 114 5 0 382 495 440781024 440780911 2.680000e-42 183.0
37 TraesCS1B01G259200 chr1A 81.513 119 20 2 4130 4247 491263061 491262944 3.600000e-16 97.1
38 TraesCS1B01G259200 chr4D 86.753 385 42 7 1 382 425976594 425976216 1.880000e-113 420.0
39 TraesCS1B01G259200 chr4D 86.198 384 44 8 1 381 4932332 4931955 1.460000e-109 407.0
40 TraesCS1B01G259200 chr7D 86.719 384 42 7 1 381 72935214 72934837 6.760000e-113 418.0
41 TraesCS1B01G259200 chr7D 84.935 385 48 8 1 381 82854655 82854277 8.870000e-102 381.0
42 TraesCS1B01G259200 chr7D 84.135 208 19 11 4126 4328 7934706 7934904 5.770000e-44 189.0
43 TraesCS1B01G259200 chr7D 84.071 113 17 1 4114 4226 182599427 182599538 1.660000e-19 108.0
44 TraesCS1B01G259200 chr2D 85.714 385 44 8 4 382 35544572 35544951 3.170000e-106 396.0
45 TraesCS1B01G259200 chr2A 85.347 389 47 8 1 381 49298385 49297999 1.140000e-105 394.0
46 TraesCS1B01G259200 chr4B 86.594 276 18 14 4114 4370 37314976 37315251 1.990000e-73 287.0
47 TraesCS1B01G259200 chr4B 83.712 264 23 12 4114 4370 86145649 86145399 9.450000e-57 231.0
48 TraesCS1B01G259200 chr4B 83.410 217 30 5 4114 4328 648505892 648505680 3.450000e-46 196.0
49 TraesCS1B01G259200 chr2B 84.752 282 18 15 4114 4370 668361390 668361109 4.340000e-65 259.0
50 TraesCS1B01G259200 chr5B 81.443 291 20 17 4114 4370 540862738 540862448 1.590000e-49 207.0
51 TraesCS1B01G259200 chr7B 81.923 260 27 11 4129 4370 571565933 571565676 7.410000e-48 202.0
52 TraesCS1B01G259200 chr7B 90.968 155 3 6 4227 4370 474485839 474485993 9.590000e-47 198.0
53 TraesCS1B01G259200 chr7B 77.174 276 26 22 4114 4370 15927837 15927580 4.590000e-25 126.0
54 TraesCS1B01G259200 chr7B 83.929 112 17 1 4114 4225 687821447 687821337 5.980000e-19 106.0
55 TraesCS1B01G259200 chr5A 84.956 113 17 0 4114 4226 83935822 83935934 9.930000e-22 115.0
56 TraesCS1B01G259200 chr7A 75.362 276 38 16 4114 4362 282557747 282557475 5.980000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G259200 chr1B 456710790 456715159 4369 True 8070.0 8070 100.0000 1 4370 1 chr1B.!!$R2 4369
1 TraesCS1B01G259200 chr1B 642698932 642701445 2513 True 3639.0 3639 92.8460 938 3444 1 chr1B.!!$R3 2506
2 TraesCS1B01G259200 chr1D 341026764 341030464 3700 True 5657.0 5657 94.3260 413 4115 1 chr1D.!!$R1 3702
3 TraesCS1B01G259200 chr1D 465900593 465903106 2513 True 3677.0 3677 93.1240 938 3444 1 chr1D.!!$R2 2506
4 TraesCS1B01G259200 chr3B 146979859 146982530 2671 True 3862.0 3862 92.8600 842 3504 1 chr3B.!!$R1 2662
5 TraesCS1B01G259200 chr3B 172091829 172094879 3050 False 3784.0 3784 89.2230 382 3427 1 chr3B.!!$F1 3045
6 TraesCS1B01G259200 chr3B 172979239 172982244 3005 True 2065.0 3834 89.5320 382 3497 2 chr3B.!!$R4 3115
7 TraesCS1B01G259200 chr3B 172052070 172055198 3128 False 1950.5 3727 88.6170 837 3754 2 chr3B.!!$F3 2917
8 TraesCS1B01G259200 chr3B 172170543 172173557 3014 False 1918.5 3663 88.9280 938 3754 2 chr3B.!!$F4 2816
9 TraesCS1B01G259200 chr3D 121332209 121334847 2638 True 3712.0 3712 92.1710 842 3464 1 chr3D.!!$R1 2622
10 TraesCS1B01G259200 chr3D 120142523 120145070 2547 False 3637.0 3637 92.3680 938 3504 1 chr3D.!!$F2 2566
11 TraesCS1B01G259200 chr3D 121266254 121269418 3164 True 2069.0 3779 91.0905 382 3464 2 chr3D.!!$R2 3082
12 TraesCS1B01G259200 chr3A 127856232 127858894 2662 True 1950.5 3723 88.4355 938 3773 2 chr3A.!!$R1 2835
13 TraesCS1B01G259200 chr6D 452125313 452127983 2670 True 3668.0 3668 91.7010 930 3562 1 chr6D.!!$R2 2632
14 TraesCS1B01G259200 chr1A 440779535 440781024 1489 True 733.0 1672 94.5420 382 1916 3 chr1A.!!$R3 1534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 459 0.452122 GCACACGTAATGTTGACGGC 60.452 55.0 0.0 0.0 44.58 5.68 F
1329 1498 0.326618 ACATCCTCCCCTTGGACGAT 60.327 55.0 0.0 0.0 37.01 3.73 F
2454 2624 0.113776 AAGAGACCGTCCAGTACCCA 59.886 55.0 0.0 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2015 0.693049 ATGGAGGGTGCGTTCTTCTT 59.307 50.0 0.0 0.0 0.0 2.52 R
2703 2873 0.109532 TTTGGGTTGCGATGGAGTCA 59.890 50.0 0.0 0.0 0.0 3.41 R
4144 4590 0.029567 CGTGCCGCAAACCAGTTTTA 59.970 50.0 0.0 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.988744 TGCACCGGTCCAGAAAAA 57.011 50.000 2.59 0.00 0.00 1.94
85 86 6.918892 TTCCATGGTAGACAATTTATCACG 57.081 37.500 12.58 0.00 0.00 4.35
86 87 5.984725 TCCATGGTAGACAATTTATCACGT 58.015 37.500 12.58 0.00 0.00 4.49
87 88 5.815222 TCCATGGTAGACAATTTATCACGTG 59.185 40.000 12.58 9.94 0.00 4.49
88 89 5.815222 CCATGGTAGACAATTTATCACGTGA 59.185 40.000 22.48 22.48 0.00 4.35
89 90 6.018751 CCATGGTAGACAATTTATCACGTGAG 60.019 42.308 24.41 11.37 0.00 3.51
90 91 5.416083 TGGTAGACAATTTATCACGTGAGG 58.584 41.667 24.41 10.79 0.00 3.86
91 92 5.046878 TGGTAGACAATTTATCACGTGAGGT 60.047 40.000 24.41 10.73 0.00 3.85
92 93 5.519206 GGTAGACAATTTATCACGTGAGGTC 59.481 44.000 24.41 20.27 0.00 3.85
93 94 4.504858 AGACAATTTATCACGTGAGGTCC 58.495 43.478 24.41 7.32 0.00 4.46
94 95 4.223032 AGACAATTTATCACGTGAGGTCCT 59.777 41.667 24.41 9.15 0.00 3.85
95 96 4.504858 ACAATTTATCACGTGAGGTCCTC 58.495 43.478 24.41 12.40 0.00 3.71
96 97 4.223032 ACAATTTATCACGTGAGGTCCTCT 59.777 41.667 24.41 7.61 0.00 3.69
97 98 4.657436 ATTTATCACGTGAGGTCCTCTC 57.343 45.455 24.41 14.99 42.74 3.20
110 111 6.429791 GAGGTCCTCTCAAATTTTTAGCTC 57.570 41.667 12.02 0.00 42.02 4.09
111 112 5.880901 AGGTCCTCTCAAATTTTTAGCTCA 58.119 37.500 0.00 0.00 0.00 4.26
112 113 6.488715 AGGTCCTCTCAAATTTTTAGCTCAT 58.511 36.000 0.00 0.00 0.00 2.90
113 114 6.950619 AGGTCCTCTCAAATTTTTAGCTCATT 59.049 34.615 0.00 0.00 0.00 2.57
114 115 7.452813 AGGTCCTCTCAAATTTTTAGCTCATTT 59.547 33.333 0.00 0.00 0.00 2.32
115 116 7.543520 GGTCCTCTCAAATTTTTAGCTCATTTG 59.456 37.037 11.61 11.61 38.66 2.32
116 117 8.299570 GTCCTCTCAAATTTTTAGCTCATTTGA 58.700 33.333 16.43 16.43 42.13 2.69
117 118 8.859090 TCCTCTCAAATTTTTAGCTCATTTGAA 58.141 29.630 17.34 11.19 43.15 2.69
118 119 8.919661 CCTCTCAAATTTTTAGCTCATTTGAAC 58.080 33.333 17.34 0.00 43.15 3.18
119 120 9.688592 CTCTCAAATTTTTAGCTCATTTGAACT 57.311 29.630 17.34 0.00 43.15 3.01
126 127 8.902540 TTTTTAGCTCATTTGAACTACTGAGA 57.097 30.769 0.00 0.00 37.85 3.27
127 128 8.902540 TTTTAGCTCATTTGAACTACTGAGAA 57.097 30.769 0.00 0.00 37.85 2.87
128 129 8.539770 TTTAGCTCATTTGAACTACTGAGAAG 57.460 34.615 0.00 0.00 37.85 2.85
129 130 4.934602 AGCTCATTTGAACTACTGAGAAGC 59.065 41.667 2.75 0.00 37.85 3.86
130 131 4.934602 GCTCATTTGAACTACTGAGAAGCT 59.065 41.667 2.75 0.00 37.85 3.74
131 132 5.063312 GCTCATTTGAACTACTGAGAAGCTC 59.937 44.000 2.75 0.00 37.85 4.09
132 133 6.352016 TCATTTGAACTACTGAGAAGCTCT 57.648 37.500 0.00 0.00 0.00 4.09
133 134 6.393990 TCATTTGAACTACTGAGAAGCTCTC 58.606 40.000 6.31 6.31 43.65 3.20
162 163 7.639113 AAAAAGACAAATCAGGTCAGTACAA 57.361 32.000 0.00 0.00 37.74 2.41
163 164 7.823745 AAAAGACAAATCAGGTCAGTACAAT 57.176 32.000 0.00 0.00 37.74 2.71
164 165 6.808008 AAGACAAATCAGGTCAGTACAATG 57.192 37.500 0.00 0.00 37.74 2.82
165 166 4.697352 AGACAAATCAGGTCAGTACAATGC 59.303 41.667 0.00 0.00 37.74 3.56
166 167 4.397420 ACAAATCAGGTCAGTACAATGCA 58.603 39.130 0.00 0.00 0.00 3.96
167 168 5.012239 ACAAATCAGGTCAGTACAATGCAT 58.988 37.500 0.00 0.00 0.00 3.96
168 169 6.179756 ACAAATCAGGTCAGTACAATGCATA 58.820 36.000 0.00 0.00 0.00 3.14
169 170 6.658816 ACAAATCAGGTCAGTACAATGCATAA 59.341 34.615 0.00 0.00 0.00 1.90
170 171 7.176515 ACAAATCAGGTCAGTACAATGCATAAA 59.823 33.333 0.00 0.00 0.00 1.40
171 172 6.683974 ATCAGGTCAGTACAATGCATAAAC 57.316 37.500 0.00 0.00 0.00 2.01
172 173 5.555966 TCAGGTCAGTACAATGCATAAACA 58.444 37.500 0.00 0.00 0.00 2.83
173 174 5.643348 TCAGGTCAGTACAATGCATAAACAG 59.357 40.000 0.00 0.00 0.00 3.16
174 175 5.412594 CAGGTCAGTACAATGCATAAACAGT 59.587 40.000 0.00 0.00 0.00 3.55
175 176 6.593770 CAGGTCAGTACAATGCATAAACAGTA 59.406 38.462 0.00 0.00 0.00 2.74
176 177 7.119116 CAGGTCAGTACAATGCATAAACAGTAA 59.881 37.037 0.00 0.00 0.00 2.24
177 178 7.334421 AGGTCAGTACAATGCATAAACAGTAAG 59.666 37.037 0.00 0.00 0.00 2.34
178 179 6.961554 GTCAGTACAATGCATAAACAGTAAGC 59.038 38.462 0.00 0.00 0.00 3.09
179 180 6.652900 TCAGTACAATGCATAAACAGTAAGCA 59.347 34.615 0.00 0.00 39.79 3.91
180 181 7.336679 TCAGTACAATGCATAAACAGTAAGCAT 59.663 33.333 0.00 0.00 46.86 3.79
188 189 8.741101 TGCATAAACAGTAAGCATTTTTACAG 57.259 30.769 0.00 0.00 36.27 2.74
189 190 8.572185 TGCATAAACAGTAAGCATTTTTACAGA 58.428 29.630 0.00 0.00 36.27 3.41
190 191 8.850452 GCATAAACAGTAAGCATTTTTACAGAC 58.150 33.333 0.00 0.00 36.27 3.51
191 192 9.341899 CATAAACAGTAAGCATTTTTACAGACC 57.658 33.333 0.00 0.00 36.27 3.85
192 193 5.959618 ACAGTAAGCATTTTTACAGACCC 57.040 39.130 0.00 0.00 36.27 4.46
193 194 4.765339 ACAGTAAGCATTTTTACAGACCCC 59.235 41.667 0.00 0.00 36.27 4.95
194 195 4.764823 CAGTAAGCATTTTTACAGACCCCA 59.235 41.667 0.00 0.00 36.27 4.96
195 196 5.242838 CAGTAAGCATTTTTACAGACCCCAA 59.757 40.000 0.00 0.00 36.27 4.12
196 197 4.871933 AAGCATTTTTACAGACCCCAAG 57.128 40.909 0.00 0.00 0.00 3.61
197 198 3.844640 AGCATTTTTACAGACCCCAAGT 58.155 40.909 0.00 0.00 0.00 3.16
198 199 4.223144 AGCATTTTTACAGACCCCAAGTT 58.777 39.130 0.00 0.00 0.00 2.66
199 200 4.653801 AGCATTTTTACAGACCCCAAGTTT 59.346 37.500 0.00 0.00 0.00 2.66
200 201 4.749598 GCATTTTTACAGACCCCAAGTTTG 59.250 41.667 0.00 0.00 36.65 2.93
201 202 5.683770 GCATTTTTACAGACCCCAAGTTTGT 60.684 40.000 0.00 0.00 45.27 2.83
202 203 5.585820 TTTTTACAGACCCCAAGTTTGTC 57.414 39.130 0.00 0.00 42.51 3.18
203 204 4.513406 TTTACAGACCCCAAGTTTGTCT 57.487 40.909 0.00 0.00 42.51 3.41
204 205 4.513406 TTACAGACCCCAAGTTTGTCTT 57.487 40.909 0.00 0.00 42.51 3.01
205 206 3.382083 ACAGACCCCAAGTTTGTCTTT 57.618 42.857 0.00 0.00 39.52 2.52
206 207 3.708451 ACAGACCCCAAGTTTGTCTTTT 58.292 40.909 0.00 0.00 39.52 2.27
207 208 4.093743 ACAGACCCCAAGTTTGTCTTTTT 58.906 39.130 0.00 0.00 39.52 1.94
232 233 3.465742 GAGAGCTGCTCATATGTCCAA 57.534 47.619 29.49 0.00 43.38 3.53
233 234 3.801698 GAGAGCTGCTCATATGTCCAAA 58.198 45.455 29.49 0.00 43.38 3.28
234 235 4.387598 GAGAGCTGCTCATATGTCCAAAT 58.612 43.478 29.49 5.90 43.38 2.32
235 236 4.135306 AGAGCTGCTCATATGTCCAAATG 58.865 43.478 29.49 0.00 32.06 2.32
236 237 3.220110 AGCTGCTCATATGTCCAAATGG 58.780 45.455 1.90 0.00 0.00 3.16
237 238 2.954318 GCTGCTCATATGTCCAAATGGT 59.046 45.455 1.90 0.00 36.34 3.55
238 239 3.382546 GCTGCTCATATGTCCAAATGGTT 59.617 43.478 1.90 0.00 36.34 3.67
239 240 4.142093 GCTGCTCATATGTCCAAATGGTTT 60.142 41.667 1.90 0.00 36.34 3.27
240 241 5.327616 TGCTCATATGTCCAAATGGTTTG 57.672 39.130 1.90 0.00 40.32 2.93
241 242 5.015515 TGCTCATATGTCCAAATGGTTTGA 58.984 37.500 1.90 0.00 43.26 2.69
242 243 5.479724 TGCTCATATGTCCAAATGGTTTGAA 59.520 36.000 1.90 0.00 43.26 2.69
243 244 6.014755 TGCTCATATGTCCAAATGGTTTGAAA 60.015 34.615 1.90 0.00 43.26 2.69
244 245 6.873076 GCTCATATGTCCAAATGGTTTGAAAA 59.127 34.615 1.90 0.00 43.26 2.29
245 246 7.550196 GCTCATATGTCCAAATGGTTTGAAAAT 59.450 33.333 1.90 0.00 43.26 1.82
246 247 9.439500 CTCATATGTCCAAATGGTTTGAAAATT 57.561 29.630 1.90 0.00 43.26 1.82
247 248 9.217278 TCATATGTCCAAATGGTTTGAAAATTG 57.783 29.630 1.90 0.00 43.26 2.32
248 249 9.217278 CATATGTCCAAATGGTTTGAAAATTGA 57.783 29.630 4.11 0.00 43.26 2.57
249 250 9.790344 ATATGTCCAAATGGTTTGAAAATTGAA 57.210 25.926 4.11 0.00 43.26 2.69
250 251 7.551035 TGTCCAAATGGTTTGAAAATTGAAG 57.449 32.000 4.11 0.00 43.26 3.02
251 252 6.038050 TGTCCAAATGGTTTGAAAATTGAAGC 59.962 34.615 4.11 0.00 43.26 3.86
252 253 5.236047 TCCAAATGGTTTGAAAATTGAAGCG 59.764 36.000 4.11 0.00 43.26 4.68
253 254 5.007528 CCAAATGGTTTGAAAATTGAAGCGT 59.992 36.000 4.11 0.00 43.26 5.07
254 255 6.201806 CCAAATGGTTTGAAAATTGAAGCGTA 59.798 34.615 4.11 0.00 43.26 4.42
255 256 6.763303 AATGGTTTGAAAATTGAAGCGTAC 57.237 33.333 0.00 0.00 0.00 3.67
256 257 4.612943 TGGTTTGAAAATTGAAGCGTACC 58.387 39.130 0.00 0.00 0.00 3.34
257 258 4.339814 TGGTTTGAAAATTGAAGCGTACCT 59.660 37.500 0.00 0.00 0.00 3.08
258 259 4.915667 GGTTTGAAAATTGAAGCGTACCTC 59.084 41.667 0.00 0.00 0.00 3.85
259 260 5.506649 GGTTTGAAAATTGAAGCGTACCTCA 60.507 40.000 0.00 0.00 0.00 3.86
260 261 4.742438 TGAAAATTGAAGCGTACCTCAC 57.258 40.909 0.00 0.00 0.00 3.51
273 274 5.006649 CGTACCTCACGCATCAAATTATC 57.993 43.478 0.00 0.00 45.03 1.75
274 275 4.745125 CGTACCTCACGCATCAAATTATCT 59.255 41.667 0.00 0.00 45.03 1.98
275 276 5.918576 CGTACCTCACGCATCAAATTATCTA 59.081 40.000 0.00 0.00 45.03 1.98
276 277 6.129168 CGTACCTCACGCATCAAATTATCTAC 60.129 42.308 0.00 0.00 45.03 2.59
277 278 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
278 279 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
279 280 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
280 281 5.423886 TCACGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
281 282 6.054941 TCACGCATCAAATTATCTACCACAT 58.945 36.000 0.00 0.00 0.00 3.21
282 283 7.213678 TCACGCATCAAATTATCTACCACATA 58.786 34.615 0.00 0.00 0.00 2.29
283 284 7.170828 TCACGCATCAAATTATCTACCACATAC 59.829 37.037 0.00 0.00 0.00 2.39
284 285 6.989759 ACGCATCAAATTATCTACCACATACA 59.010 34.615 0.00 0.00 0.00 2.29
285 286 7.497579 ACGCATCAAATTATCTACCACATACAA 59.502 33.333 0.00 0.00 0.00 2.41
286 287 8.341903 CGCATCAAATTATCTACCACATACAAA 58.658 33.333 0.00 0.00 0.00 2.83
359 360 3.325753 GGGGGTGCAGCTGAGACT 61.326 66.667 20.43 0.00 0.00 3.24
360 361 2.046507 GGGGTGCAGCTGAGACTG 60.047 66.667 20.43 0.00 40.80 3.51
361 362 2.046507 GGGTGCAGCTGAGACTGG 60.047 66.667 20.43 0.00 38.16 4.00
362 363 2.046507 GGTGCAGCTGAGACTGGG 60.047 66.667 20.43 0.00 38.16 4.45
363 364 2.745492 GTGCAGCTGAGACTGGGC 60.745 66.667 20.43 0.00 38.16 5.36
364 365 2.926779 TGCAGCTGAGACTGGGCT 60.927 61.111 20.43 0.00 38.16 5.19
365 366 2.125188 GCAGCTGAGACTGGGCTC 60.125 66.667 20.43 0.00 38.16 4.70
366 367 2.952293 GCAGCTGAGACTGGGCTCA 61.952 63.158 20.43 5.98 42.31 4.26
371 372 3.464878 TGAGACTGGGCTCAGAAGT 57.535 52.632 23.49 3.31 43.49 3.01
372 373 0.972134 TGAGACTGGGCTCAGAAGTG 59.028 55.000 23.49 0.00 43.49 3.16
373 374 1.261480 GAGACTGGGCTCAGAAGTGA 58.739 55.000 23.49 0.00 43.49 3.41
374 375 1.620819 GAGACTGGGCTCAGAAGTGAA 59.379 52.381 23.49 0.00 43.49 3.18
375 376 2.235898 GAGACTGGGCTCAGAAGTGAAT 59.764 50.000 23.49 0.00 43.49 2.57
376 377 2.641815 AGACTGGGCTCAGAAGTGAATT 59.358 45.455 23.49 0.00 43.49 2.17
377 378 3.840666 AGACTGGGCTCAGAAGTGAATTA 59.159 43.478 23.49 0.00 43.49 1.40
378 379 3.935828 GACTGGGCTCAGAAGTGAATTAC 59.064 47.826 23.49 0.00 43.49 1.89
379 380 3.274288 CTGGGCTCAGAAGTGAATTACC 58.726 50.000 8.28 0.00 43.49 2.85
380 381 2.280628 GGGCTCAGAAGTGAATTACCG 58.719 52.381 0.00 0.00 30.14 4.02
458 459 0.452122 GCACACGTAATGTTGACGGC 60.452 55.000 0.00 0.00 44.58 5.68
750 783 4.704103 AGCACGCCTCCCTCCTCA 62.704 66.667 0.00 0.00 0.00 3.86
778 820 1.303236 CCGGTGTCCATGGAGCAAA 60.303 57.895 16.81 0.00 0.00 3.68
1201 1363 3.733960 CCGACGACACCTGCGAGA 61.734 66.667 0.00 0.00 0.00 4.04
1249 1418 2.031163 GCTCCAACCTGCGAGTGT 59.969 61.111 0.00 0.00 0.00 3.55
1329 1498 0.326618 ACATCCTCCCCTTGGACGAT 60.327 55.000 0.00 0.00 37.01 3.73
2454 2624 0.113776 AAGAGACCGTCCAGTACCCA 59.886 55.000 0.00 0.00 0.00 4.51
2457 2627 0.178941 AGACCGTCCAGTACCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
2703 2873 1.599542 GTGCTGTTCTTTGACGAGCTT 59.400 47.619 0.00 0.00 0.00 3.74
3044 3215 2.290260 ACATCACGGAAATCTGCCAGAA 60.290 45.455 0.00 0.00 0.00 3.02
3060 3231 1.060937 GAAGGCATGCAAGTACGCG 59.939 57.895 21.36 3.53 33.35 6.01
3198 3373 1.062148 CAGTCGATGAAGTACGCGAGA 59.938 52.381 15.93 0.00 33.00 4.04
3225 3400 1.241315 TGAGCGACACCGACATCAGA 61.241 55.000 0.00 0.00 38.22 3.27
3234 3409 3.070446 ACACCGACATCAGAAAGTACCAA 59.930 43.478 0.00 0.00 0.00 3.67
3372 3547 7.415592 TGAAGATGATCTGTACAAGTGATCT 57.584 36.000 18.92 11.99 37.89 2.75
3389 3564 9.307121 CAAGTGATCTAGTAACCATTGTTAGAG 57.693 37.037 0.00 0.00 37.62 2.43
3450 3640 2.494073 GTTTCCTCTCGTCCATCACTCT 59.506 50.000 0.00 0.00 0.00 3.24
3535 3777 6.045955 CCTTGTTATGCTTTCCTAGACTCTC 58.954 44.000 0.00 0.00 0.00 3.20
3789 4215 3.974871 TTTTCCTGTTAACTGAACCGC 57.025 42.857 13.56 0.00 37.22 5.68
3792 4218 0.250553 CCTGTTAACTGAACCGCCCA 60.251 55.000 13.56 0.00 37.22 5.36
3811 4237 2.366533 CATCTGCTCCTGCACAAGATT 58.633 47.619 0.00 0.00 45.31 2.40
3841 4267 7.616313 AGATCCTCTGTTATTTTCGTTTCTCT 58.384 34.615 0.00 0.00 0.00 3.10
3857 4283 5.220043 CGTTTCTCTGACACTTATACGCTTG 60.220 44.000 0.00 0.00 0.00 4.01
3858 4284 5.638596 TTCTCTGACACTTATACGCTTGA 57.361 39.130 0.00 0.00 0.00 3.02
3859 4285 5.638596 TCTCTGACACTTATACGCTTGAA 57.361 39.130 0.00 0.00 0.00 2.69
3860 4286 6.208988 TCTCTGACACTTATACGCTTGAAT 57.791 37.500 0.00 0.00 0.00 2.57
3861 4287 7.329588 TCTCTGACACTTATACGCTTGAATA 57.670 36.000 0.00 0.00 0.00 1.75
3862 4288 7.941919 TCTCTGACACTTATACGCTTGAATAT 58.058 34.615 0.00 0.00 0.00 1.28
3863 4289 8.414003 TCTCTGACACTTATACGCTTGAATATT 58.586 33.333 0.00 0.00 0.00 1.28
3864 4290 8.942338 TCTGACACTTATACGCTTGAATATTT 57.058 30.769 0.00 0.00 0.00 1.40
3865 4291 9.378551 TCTGACACTTATACGCTTGAATATTTT 57.621 29.630 0.00 0.00 0.00 1.82
3876 4302 8.965986 ACGCTTGAATATTTTACTTTTTCCTC 57.034 30.769 0.00 0.00 0.00 3.71
3877 4303 8.793592 ACGCTTGAATATTTTACTTTTTCCTCT 58.206 29.630 0.00 0.00 0.00 3.69
4068 4514 4.082733 GGATCCCAAAAGTCTTAGTTGCAC 60.083 45.833 0.00 0.00 0.00 4.57
4080 4526 5.230097 GTCTTAGTTGCACAAAGTTCTTTGC 59.770 40.000 20.65 12.08 35.42 3.68
4096 4542 7.620880 AGTTCTTTGCTAGTGTATATCCACAA 58.379 34.615 0.93 0.00 37.82 3.33
4127 4573 4.047834 TTGTCTCCAACAGCTGCG 57.952 55.556 15.27 5.03 39.58 5.18
4128 4574 2.253758 TTGTCTCCAACAGCTGCGC 61.254 57.895 15.27 0.00 39.58 6.09
4129 4575 2.666190 GTCTCCAACAGCTGCGCA 60.666 61.111 15.27 10.98 0.00 6.09
4130 4576 2.110835 TCTCCAACAGCTGCGCAA 59.889 55.556 15.27 0.00 0.00 4.85
4131 4577 2.253452 CTCCAACAGCTGCGCAAC 59.747 61.111 15.27 7.27 0.00 4.17
4132 4578 3.584250 CTCCAACAGCTGCGCAACG 62.584 63.158 15.27 5.05 0.00 4.10
4152 4598 2.202298 CGGCGCGCTTAAAACTGG 60.202 61.111 32.29 5.24 0.00 4.00
4153 4599 2.951458 GGCGCGCTTAAAACTGGT 59.049 55.556 32.29 0.00 0.00 4.00
4154 4600 1.284715 GGCGCGCTTAAAACTGGTT 59.715 52.632 32.29 0.00 0.00 3.67
4155 4601 0.318360 GGCGCGCTTAAAACTGGTTT 60.318 50.000 32.29 0.00 0.00 3.27
4156 4602 0.775861 GCGCGCTTAAAACTGGTTTG 59.224 50.000 26.67 0.00 32.36 2.93
4157 4603 0.775861 CGCGCTTAAAACTGGTTTGC 59.224 50.000 5.56 0.00 32.36 3.68
4158 4604 0.775861 GCGCTTAAAACTGGTTTGCG 59.224 50.000 15.83 15.83 41.94 4.85
4159 4605 1.404477 CGCTTAAAACTGGTTTGCGG 58.596 50.000 13.22 0.21 38.20 5.69
4160 4606 1.136690 GCTTAAAACTGGTTTGCGGC 58.863 50.000 0.00 0.00 32.36 6.53
4161 4607 1.537135 GCTTAAAACTGGTTTGCGGCA 60.537 47.619 0.00 0.00 32.36 5.69
4162 4608 2.124122 CTTAAAACTGGTTTGCGGCAC 58.876 47.619 0.05 0.00 32.36 5.01
4179 4625 3.177600 CGCCCATCGTCAGGTTTG 58.822 61.111 0.00 0.00 0.00 2.93
4180 4626 1.375396 CGCCCATCGTCAGGTTTGA 60.375 57.895 0.00 0.00 0.00 2.69
4181 4627 0.744414 CGCCCATCGTCAGGTTTGAT 60.744 55.000 0.00 0.00 35.39 2.57
4182 4628 0.734889 GCCCATCGTCAGGTTTGATG 59.265 55.000 0.00 0.00 40.92 3.07
4183 4629 1.950484 GCCCATCGTCAGGTTTGATGT 60.950 52.381 1.34 0.00 40.52 3.06
4184 4630 1.739466 CCCATCGTCAGGTTTGATGTG 59.261 52.381 1.34 0.00 40.52 3.21
4185 4631 1.739466 CCATCGTCAGGTTTGATGTGG 59.261 52.381 1.34 1.86 40.52 4.17
4186 4632 1.131126 CATCGTCAGGTTTGATGTGGC 59.869 52.381 0.00 0.00 40.52 5.01
4187 4633 0.948623 TCGTCAGGTTTGATGTGGCG 60.949 55.000 0.00 0.00 40.52 5.69
4188 4634 1.210155 GTCAGGTTTGATGTGGCGC 59.790 57.895 0.00 0.00 35.39 6.53
4189 4635 1.228094 TCAGGTTTGATGTGGCGCA 60.228 52.632 10.83 1.92 0.00 6.09
4190 4636 1.081242 CAGGTTTGATGTGGCGCAC 60.081 57.895 10.83 6.37 34.56 5.34
4224 4670 2.458592 CAGCCGTGCTAAAATACAGC 57.541 50.000 0.00 0.00 36.40 4.40
4225 4671 1.006832 AGCCGTGCTAAAATACAGCG 58.993 50.000 0.00 0.00 42.13 5.18
4226 4672 1.003851 GCCGTGCTAAAATACAGCGA 58.996 50.000 0.00 0.00 42.13 4.93
4227 4673 1.395608 GCCGTGCTAAAATACAGCGAA 59.604 47.619 0.00 0.00 42.13 4.70
4228 4674 2.031683 GCCGTGCTAAAATACAGCGAAT 59.968 45.455 0.00 0.00 42.13 3.34
4229 4675 3.607439 CCGTGCTAAAATACAGCGAATG 58.393 45.455 0.00 0.00 42.13 2.67
4230 4676 3.029074 CGTGCTAAAATACAGCGAATGC 58.971 45.455 0.00 0.00 42.13 3.56
4231 4677 3.485051 CGTGCTAAAATACAGCGAATGCA 60.485 43.478 0.00 0.00 46.23 3.96
4232 4678 4.031028 GTGCTAAAATACAGCGAATGCAG 58.969 43.478 0.00 0.00 46.23 4.41
4233 4679 3.038710 GCTAAAATACAGCGAATGCAGC 58.961 45.455 0.00 0.00 46.23 5.25
4234 4680 2.178474 AAAATACAGCGAATGCAGCG 57.822 45.000 7.33 7.33 46.23 5.18
4259 4705 3.740397 GCAGCTGGCGCAATGTCA 61.740 61.111 17.12 0.00 39.10 3.58
4260 4706 3.060020 GCAGCTGGCGCAATGTCAT 62.060 57.895 17.12 0.00 39.10 3.06
4261 4707 1.509463 CAGCTGGCGCAATGTCATT 59.491 52.632 10.83 0.00 39.10 2.57
4262 4708 0.108992 CAGCTGGCGCAATGTCATTT 60.109 50.000 10.83 0.00 39.10 2.32
4263 4709 0.604578 AGCTGGCGCAATGTCATTTT 59.395 45.000 10.83 0.00 39.10 1.82
4264 4710 0.717224 GCTGGCGCAATGTCATTTTG 59.283 50.000 10.83 0.00 35.78 2.44
4265 4711 1.352114 CTGGCGCAATGTCATTTTGG 58.648 50.000 10.83 0.00 0.00 3.28
4266 4712 0.964700 TGGCGCAATGTCATTTTGGA 59.035 45.000 10.83 0.00 0.00 3.53
4267 4713 1.336702 TGGCGCAATGTCATTTTGGAC 60.337 47.619 10.83 0.00 38.29 4.02
4286 4732 8.777865 TTTGGACACAAAATAAATTTCACACA 57.222 26.923 0.00 0.00 43.21 3.72
4287 4733 8.954950 TTGGACACAAAATAAATTTCACACAT 57.045 26.923 0.00 0.00 32.66 3.21
4288 4734 8.586570 TGGACACAAAATAAATTTCACACATC 57.413 30.769 0.00 0.00 0.00 3.06
4289 4735 8.200120 TGGACACAAAATAAATTTCACACATCA 58.800 29.630 0.00 0.00 0.00 3.07
4290 4736 8.487176 GGACACAAAATAAATTTCACACATCAC 58.513 33.333 0.00 0.00 0.00 3.06
4291 4737 8.939201 ACACAAAATAAATTTCACACATCACA 57.061 26.923 0.00 0.00 0.00 3.58
4292 4738 9.376075 ACACAAAATAAATTTCACACATCACAA 57.624 25.926 0.00 0.00 0.00 3.33
4300 4746 8.545229 AAATTTCACACATCACAAAACAAAGA 57.455 26.923 0.00 0.00 0.00 2.52
4301 4747 6.942886 TTTCACACATCACAAAACAAAGAC 57.057 33.333 0.00 0.00 0.00 3.01
4302 4748 5.635417 TCACACATCACAAAACAAAGACA 57.365 34.783 0.00 0.00 0.00 3.41
4303 4749 6.206395 TCACACATCACAAAACAAAGACAT 57.794 33.333 0.00 0.00 0.00 3.06
4304 4750 6.035217 TCACACATCACAAAACAAAGACATG 58.965 36.000 0.00 0.00 0.00 3.21
4305 4751 5.232626 CACACATCACAAAACAAAGACATGG 59.767 40.000 0.00 0.00 0.00 3.66
4306 4752 4.209703 CACATCACAAAACAAAGACATGGC 59.790 41.667 0.00 0.00 0.00 4.40
4307 4753 4.141981 ACATCACAAAACAAAGACATGGCA 60.142 37.500 0.00 0.00 0.00 4.92
4308 4754 4.669206 TCACAAAACAAAGACATGGCAT 57.331 36.364 0.00 0.00 0.00 4.40
4309 4755 5.781210 TCACAAAACAAAGACATGGCATA 57.219 34.783 0.00 0.00 0.00 3.14
4310 4756 6.343716 TCACAAAACAAAGACATGGCATAT 57.656 33.333 0.00 0.00 0.00 1.78
4311 4757 7.459795 TCACAAAACAAAGACATGGCATATA 57.540 32.000 0.00 0.00 0.00 0.86
4312 4758 7.890515 TCACAAAACAAAGACATGGCATATAA 58.109 30.769 0.00 0.00 0.00 0.98
4313 4759 8.530311 TCACAAAACAAAGACATGGCATATAAT 58.470 29.630 0.00 0.00 0.00 1.28
4314 4760 9.153721 CACAAAACAAAGACATGGCATATAATT 57.846 29.630 0.00 0.00 0.00 1.40
4315 4761 9.723601 ACAAAACAAAGACATGGCATATAATTT 57.276 25.926 0.00 0.00 0.00 1.82
4338 4784 8.641499 TTTAAATCACAAACAAGTTGATGACC 57.359 30.769 10.54 0.00 39.87 4.02
4339 4785 5.850557 AATCACAAACAAGTTGATGACCA 57.149 34.783 10.54 0.00 39.87 4.02
4340 4786 5.850557 ATCACAAACAAGTTGATGACCAA 57.149 34.783 10.54 0.00 39.87 3.67
4341 4787 5.651387 TCACAAACAAGTTGATGACCAAA 57.349 34.783 10.54 0.00 39.87 3.28
4342 4788 6.030548 TCACAAACAAGTTGATGACCAAAA 57.969 33.333 10.54 0.00 39.87 2.44
4343 4789 6.098679 TCACAAACAAGTTGATGACCAAAAG 58.901 36.000 10.54 0.00 39.87 2.27
4344 4790 5.868801 CACAAACAAGTTGATGACCAAAAGT 59.131 36.000 10.54 0.00 39.87 2.66
4345 4791 6.368516 CACAAACAAGTTGATGACCAAAAGTT 59.631 34.615 10.54 0.00 39.87 2.66
4346 4792 6.589907 ACAAACAAGTTGATGACCAAAAGTTC 59.410 34.615 10.54 0.00 39.87 3.01
4347 4793 5.913137 ACAAGTTGATGACCAAAAGTTCA 57.087 34.783 10.54 0.00 36.36 3.18
4348 4794 6.469782 ACAAGTTGATGACCAAAAGTTCAT 57.530 33.333 10.54 0.00 36.36 2.57
4349 4795 6.275335 ACAAGTTGATGACCAAAAGTTCATG 58.725 36.000 10.54 0.00 36.36 3.07
4350 4796 4.874970 AGTTGATGACCAAAAGTTCATGC 58.125 39.130 0.00 0.00 36.36 4.06
4351 4797 3.940209 TGATGACCAAAAGTTCATGCC 57.060 42.857 0.00 0.00 0.00 4.40
4352 4798 3.499338 TGATGACCAAAAGTTCATGCCT 58.501 40.909 0.00 0.00 0.00 4.75
4353 4799 4.661222 TGATGACCAAAAGTTCATGCCTA 58.339 39.130 0.00 0.00 0.00 3.93
4354 4800 4.458989 TGATGACCAAAAGTTCATGCCTAC 59.541 41.667 0.00 0.00 0.00 3.18
4355 4801 3.826524 TGACCAAAAGTTCATGCCTACA 58.173 40.909 0.00 0.00 0.00 2.74
4356 4802 4.211125 TGACCAAAAGTTCATGCCTACAA 58.789 39.130 0.00 0.00 0.00 2.41
4357 4803 4.278170 TGACCAAAAGTTCATGCCTACAAG 59.722 41.667 0.00 0.00 0.00 3.16
4358 4804 4.215109 ACCAAAAGTTCATGCCTACAAGT 58.785 39.130 0.00 0.00 0.00 3.16
4359 4805 4.649218 ACCAAAAGTTCATGCCTACAAGTT 59.351 37.500 0.00 0.00 0.00 2.66
4360 4806 5.221244 ACCAAAAGTTCATGCCTACAAGTTC 60.221 40.000 0.00 0.00 0.00 3.01
4361 4807 5.221224 CCAAAAGTTCATGCCTACAAGTTCA 60.221 40.000 0.00 0.00 0.00 3.18
4362 4808 6.272318 CAAAAGTTCATGCCTACAAGTTCAA 58.728 36.000 0.00 0.00 0.00 2.69
4363 4809 6.463995 AAAGTTCATGCCTACAAGTTCAAA 57.536 33.333 0.00 0.00 0.00 2.69
4364 4810 6.655078 AAGTTCATGCCTACAAGTTCAAAT 57.345 33.333 0.00 0.00 0.00 2.32
4365 4811 6.655078 AGTTCATGCCTACAAGTTCAAATT 57.345 33.333 0.00 0.00 0.00 1.82
4366 4812 6.681777 AGTTCATGCCTACAAGTTCAAATTC 58.318 36.000 0.00 0.00 0.00 2.17
4367 4813 6.265196 AGTTCATGCCTACAAGTTCAAATTCA 59.735 34.615 0.00 0.00 0.00 2.57
4368 4814 6.839124 TCATGCCTACAAGTTCAAATTCAT 57.161 33.333 0.00 0.00 0.00 2.57
4369 4815 6.623486 TCATGCCTACAAGTTCAAATTCATG 58.377 36.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.988744 TTTTTCTGGACCGGTGCA 57.011 50.000 28.11 28.11 0.00 4.57
59 60 8.240682 CGTGATAAATTGTCTACCATGGAAAAA 58.759 33.333 21.47 5.17 0.00 1.94
60 61 7.392113 ACGTGATAAATTGTCTACCATGGAAAA 59.608 33.333 21.47 5.30 0.00 2.29
61 62 6.882140 ACGTGATAAATTGTCTACCATGGAAA 59.118 34.615 21.47 4.94 0.00 3.13
62 63 6.315144 CACGTGATAAATTGTCTACCATGGAA 59.685 38.462 21.47 1.18 0.00 3.53
63 64 5.815222 CACGTGATAAATTGTCTACCATGGA 59.185 40.000 21.47 0.67 0.00 3.41
64 65 5.815222 TCACGTGATAAATTGTCTACCATGG 59.185 40.000 15.76 11.19 0.00 3.66
65 66 6.018751 CCTCACGTGATAAATTGTCTACCATG 60.019 42.308 20.40 0.45 0.00 3.66
66 67 6.049149 CCTCACGTGATAAATTGTCTACCAT 58.951 40.000 20.40 0.00 0.00 3.55
67 68 5.046878 ACCTCACGTGATAAATTGTCTACCA 60.047 40.000 20.40 0.00 0.00 3.25
68 69 5.416947 ACCTCACGTGATAAATTGTCTACC 58.583 41.667 20.40 0.00 0.00 3.18
69 70 5.519206 GGACCTCACGTGATAAATTGTCTAC 59.481 44.000 20.40 4.42 0.00 2.59
70 71 5.421056 AGGACCTCACGTGATAAATTGTCTA 59.579 40.000 20.40 0.00 0.00 2.59
71 72 4.223032 AGGACCTCACGTGATAAATTGTCT 59.777 41.667 20.40 6.19 0.00 3.41
72 73 4.504858 AGGACCTCACGTGATAAATTGTC 58.495 43.478 20.40 16.64 0.00 3.18
73 74 4.223032 AGAGGACCTCACGTGATAAATTGT 59.777 41.667 23.60 9.41 32.06 2.71
74 75 4.759782 AGAGGACCTCACGTGATAAATTG 58.240 43.478 23.60 5.95 32.06 2.32
75 76 4.466370 TGAGAGGACCTCACGTGATAAATT 59.534 41.667 23.60 5.20 46.38 1.82
76 77 4.023980 TGAGAGGACCTCACGTGATAAAT 58.976 43.478 23.60 4.65 46.38 1.40
77 78 3.427573 TGAGAGGACCTCACGTGATAAA 58.572 45.455 23.60 0.00 46.38 1.40
78 79 3.081710 TGAGAGGACCTCACGTGATAA 57.918 47.619 23.60 0.00 46.38 1.75
79 80 2.801077 TGAGAGGACCTCACGTGATA 57.199 50.000 23.60 0.00 46.38 2.15
80 81 3.672066 TGAGAGGACCTCACGTGAT 57.328 52.632 23.60 4.74 46.38 3.06
87 88 5.940470 TGAGCTAAAAATTTGAGAGGACCTC 59.060 40.000 14.15 14.15 42.30 3.85
88 89 5.880901 TGAGCTAAAAATTTGAGAGGACCT 58.119 37.500 0.00 0.00 0.00 3.85
89 90 6.765915 ATGAGCTAAAAATTTGAGAGGACC 57.234 37.500 0.00 0.00 0.00 4.46
90 91 8.299570 TCAAATGAGCTAAAAATTTGAGAGGAC 58.700 33.333 16.41 0.00 42.44 3.85
91 92 8.408043 TCAAATGAGCTAAAAATTTGAGAGGA 57.592 30.769 16.41 2.29 42.44 3.71
92 93 8.919661 GTTCAAATGAGCTAAAAATTTGAGAGG 58.080 33.333 18.21 1.71 45.81 3.69
93 94 9.688592 AGTTCAAATGAGCTAAAAATTTGAGAG 57.311 29.630 18.21 0.00 45.81 3.20
100 101 9.507329 TCTCAGTAGTTCAAATGAGCTAAAAAT 57.493 29.630 8.33 0.00 39.10 1.82
101 102 8.902540 TCTCAGTAGTTCAAATGAGCTAAAAA 57.097 30.769 8.33 0.00 39.10 1.94
102 103 8.902540 TTCTCAGTAGTTCAAATGAGCTAAAA 57.097 30.769 8.33 0.00 39.10 1.52
103 104 7.118390 GCTTCTCAGTAGTTCAAATGAGCTAAA 59.882 37.037 8.33 0.08 39.10 1.85
104 105 6.591834 GCTTCTCAGTAGTTCAAATGAGCTAA 59.408 38.462 8.33 0.00 39.10 3.09
105 106 6.071108 AGCTTCTCAGTAGTTCAAATGAGCTA 60.071 38.462 3.23 3.23 39.21 3.32
106 107 4.934602 GCTTCTCAGTAGTTCAAATGAGCT 59.065 41.667 5.13 5.13 39.21 4.09
107 108 4.934602 AGCTTCTCAGTAGTTCAAATGAGC 59.065 41.667 0.00 0.00 39.21 4.26
108 109 6.397272 AGAGCTTCTCAGTAGTTCAAATGAG 58.603 40.000 0.00 0.00 40.42 2.90
109 110 6.352016 AGAGCTTCTCAGTAGTTCAAATGA 57.648 37.500 0.00 0.00 32.06 2.57
110 111 6.645700 GAGAGCTTCTCAGTAGTTCAAATG 57.354 41.667 7.93 0.00 42.90 2.32
138 139 7.639113 TTGTACTGACCTGATTTGTCTTTTT 57.361 32.000 0.00 0.00 33.83 1.94
139 140 7.651808 CATTGTACTGACCTGATTTGTCTTTT 58.348 34.615 0.00 0.00 33.83 2.27
140 141 6.294176 GCATTGTACTGACCTGATTTGTCTTT 60.294 38.462 0.00 0.00 33.83 2.52
141 142 5.182001 GCATTGTACTGACCTGATTTGTCTT 59.818 40.000 0.00 0.00 33.83 3.01
142 143 4.697352 GCATTGTACTGACCTGATTTGTCT 59.303 41.667 0.00 0.00 33.83 3.41
143 144 4.455533 TGCATTGTACTGACCTGATTTGTC 59.544 41.667 0.00 0.00 0.00 3.18
144 145 4.397420 TGCATTGTACTGACCTGATTTGT 58.603 39.130 0.00 0.00 0.00 2.83
145 146 5.571784 ATGCATTGTACTGACCTGATTTG 57.428 39.130 0.00 0.00 0.00 2.32
146 147 7.176515 TGTTTATGCATTGTACTGACCTGATTT 59.823 33.333 3.54 0.00 0.00 2.17
147 148 6.658816 TGTTTATGCATTGTACTGACCTGATT 59.341 34.615 3.54 0.00 0.00 2.57
148 149 6.179756 TGTTTATGCATTGTACTGACCTGAT 58.820 36.000 3.54 0.00 0.00 2.90
149 150 5.555966 TGTTTATGCATTGTACTGACCTGA 58.444 37.500 3.54 0.00 0.00 3.86
150 151 5.412594 ACTGTTTATGCATTGTACTGACCTG 59.587 40.000 3.54 0.00 0.00 4.00
151 152 5.560724 ACTGTTTATGCATTGTACTGACCT 58.439 37.500 3.54 0.00 0.00 3.85
152 153 5.880054 ACTGTTTATGCATTGTACTGACC 57.120 39.130 3.54 0.00 0.00 4.02
153 154 6.961554 GCTTACTGTTTATGCATTGTACTGAC 59.038 38.462 3.54 0.00 0.00 3.51
154 155 6.652900 TGCTTACTGTTTATGCATTGTACTGA 59.347 34.615 3.54 0.00 0.00 3.41
155 156 6.841119 TGCTTACTGTTTATGCATTGTACTG 58.159 36.000 3.54 7.58 0.00 2.74
156 157 7.630242 ATGCTTACTGTTTATGCATTGTACT 57.370 32.000 3.54 0.00 40.88 2.73
162 163 9.357652 CTGTAAAAATGCTTACTGTTTATGCAT 57.642 29.630 3.79 3.79 44.86 3.96
163 164 8.572185 TCTGTAAAAATGCTTACTGTTTATGCA 58.428 29.630 0.00 0.00 38.05 3.96
164 165 8.850452 GTCTGTAAAAATGCTTACTGTTTATGC 58.150 33.333 0.00 0.00 34.26 3.14
165 166 9.341899 GGTCTGTAAAAATGCTTACTGTTTATG 57.658 33.333 0.00 0.00 34.26 1.90
166 167 8.520351 GGGTCTGTAAAAATGCTTACTGTTTAT 58.480 33.333 0.00 0.00 34.26 1.40
167 168 7.040271 GGGGTCTGTAAAAATGCTTACTGTTTA 60.040 37.037 0.00 0.00 34.26 2.01
168 169 6.239204 GGGGTCTGTAAAAATGCTTACTGTTT 60.239 38.462 0.00 0.00 34.26 2.83
169 170 5.243060 GGGGTCTGTAAAAATGCTTACTGTT 59.757 40.000 0.00 0.00 34.26 3.16
170 171 4.765339 GGGGTCTGTAAAAATGCTTACTGT 59.235 41.667 0.00 0.00 34.26 3.55
171 172 4.764823 TGGGGTCTGTAAAAATGCTTACTG 59.235 41.667 0.00 0.00 33.67 2.74
172 173 4.993028 TGGGGTCTGTAAAAATGCTTACT 58.007 39.130 0.00 0.00 33.67 2.24
173 174 5.243060 ACTTGGGGTCTGTAAAAATGCTTAC 59.757 40.000 0.00 0.00 33.22 2.34
174 175 5.390387 ACTTGGGGTCTGTAAAAATGCTTA 58.610 37.500 0.00 0.00 0.00 3.09
175 176 4.223144 ACTTGGGGTCTGTAAAAATGCTT 58.777 39.130 0.00 0.00 0.00 3.91
176 177 3.844640 ACTTGGGGTCTGTAAAAATGCT 58.155 40.909 0.00 0.00 0.00 3.79
177 178 4.600692 AACTTGGGGTCTGTAAAAATGC 57.399 40.909 0.00 0.00 0.00 3.56
178 179 5.912892 ACAAACTTGGGGTCTGTAAAAATG 58.087 37.500 0.00 0.00 0.00 2.32
179 180 5.897250 AGACAAACTTGGGGTCTGTAAAAAT 59.103 36.000 0.00 0.00 40.21 1.82
180 181 5.265989 AGACAAACTTGGGGTCTGTAAAAA 58.734 37.500 0.00 0.00 40.21 1.94
181 182 4.862371 AGACAAACTTGGGGTCTGTAAAA 58.138 39.130 0.00 0.00 40.21 1.52
182 183 4.513406 AGACAAACTTGGGGTCTGTAAA 57.487 40.909 0.00 0.00 40.21 2.01
183 184 4.513406 AAGACAAACTTGGGGTCTGTAA 57.487 40.909 0.00 0.00 40.80 2.41
184 185 4.513406 AAAGACAAACTTGGGGTCTGTA 57.487 40.909 0.00 0.00 40.80 2.74
185 186 3.382083 AAAGACAAACTTGGGGTCTGT 57.618 42.857 0.00 0.00 40.80 3.41
186 187 4.736126 AAAAAGACAAACTTGGGGTCTG 57.264 40.909 0.00 0.00 40.80 3.51
204 205 1.971481 TGAGCAGCTCTCAGCAAAAA 58.029 45.000 23.15 0.00 46.34 1.94
205 206 3.711937 TGAGCAGCTCTCAGCAAAA 57.288 47.368 23.15 0.00 46.34 2.44
212 213 3.465742 TTGGACATATGAGCAGCTCTC 57.534 47.619 23.15 11.57 42.23 3.20
213 214 3.920231 TTTGGACATATGAGCAGCTCT 57.080 42.857 23.15 11.20 0.00 4.09
214 215 3.252701 CCATTTGGACATATGAGCAGCTC 59.747 47.826 16.21 16.21 37.39 4.09
215 216 3.220110 CCATTTGGACATATGAGCAGCT 58.780 45.455 10.38 0.00 37.39 4.24
216 217 2.954318 ACCATTTGGACATATGAGCAGC 59.046 45.455 10.38 0.00 38.94 5.25
217 218 5.125900 TCAAACCATTTGGACATATGAGCAG 59.874 40.000 10.38 0.00 40.98 4.24
218 219 5.015515 TCAAACCATTTGGACATATGAGCA 58.984 37.500 10.38 0.00 40.98 4.26
219 220 5.581126 TCAAACCATTTGGACATATGAGC 57.419 39.130 10.38 0.60 40.98 4.26
220 221 9.439500 AATTTTCAAACCATTTGGACATATGAG 57.561 29.630 10.38 0.00 40.98 2.90
221 222 9.217278 CAATTTTCAAACCATTTGGACATATGA 57.783 29.630 10.38 0.00 40.98 2.15
222 223 9.217278 TCAATTTTCAAACCATTTGGACATATG 57.783 29.630 3.01 0.00 40.98 1.78
223 224 9.790344 TTCAATTTTCAAACCATTTGGACATAT 57.210 25.926 3.01 0.00 40.98 1.78
224 225 9.270640 CTTCAATTTTCAAACCATTTGGACATA 57.729 29.630 3.01 0.00 40.98 2.29
225 226 7.255208 GCTTCAATTTTCAAACCATTTGGACAT 60.255 33.333 3.01 0.00 40.98 3.06
226 227 6.038050 GCTTCAATTTTCAAACCATTTGGACA 59.962 34.615 3.01 0.00 40.98 4.02
227 228 6.429624 GCTTCAATTTTCAAACCATTTGGAC 58.570 36.000 3.01 0.00 40.98 4.02
228 229 5.236047 CGCTTCAATTTTCAAACCATTTGGA 59.764 36.000 3.01 0.00 40.98 3.53
229 230 5.007528 ACGCTTCAATTTTCAAACCATTTGG 59.992 36.000 1.68 0.00 40.98 3.28
230 231 6.046885 ACGCTTCAATTTTCAAACCATTTG 57.953 33.333 0.00 0.00 41.96 2.32
231 232 6.201997 GGTACGCTTCAATTTTCAAACCATTT 59.798 34.615 0.00 0.00 0.00 2.32
232 233 5.694458 GGTACGCTTCAATTTTCAAACCATT 59.306 36.000 0.00 0.00 0.00 3.16
233 234 5.010617 AGGTACGCTTCAATTTTCAAACCAT 59.989 36.000 0.00 0.00 0.00 3.55
234 235 4.339814 AGGTACGCTTCAATTTTCAAACCA 59.660 37.500 0.00 0.00 0.00 3.67
235 236 4.866921 AGGTACGCTTCAATTTTCAAACC 58.133 39.130 0.00 0.00 0.00 3.27
236 237 5.398416 GTGAGGTACGCTTCAATTTTCAAAC 59.602 40.000 0.00 0.00 32.39 2.93
237 238 5.516090 GTGAGGTACGCTTCAATTTTCAAA 58.484 37.500 0.00 0.00 32.39 2.69
238 239 4.319190 CGTGAGGTACGCTTCAATTTTCAA 60.319 41.667 0.00 0.00 46.92 2.69
239 240 3.185594 CGTGAGGTACGCTTCAATTTTCA 59.814 43.478 0.00 0.00 46.92 2.69
240 241 3.732943 CGTGAGGTACGCTTCAATTTTC 58.267 45.455 0.00 0.00 46.92 2.29
241 242 3.806316 CGTGAGGTACGCTTCAATTTT 57.194 42.857 0.00 0.00 46.92 1.82
252 253 6.145696 GGTAGATAATTTGATGCGTGAGGTAC 59.854 42.308 0.00 0.00 0.00 3.34
253 254 6.183360 TGGTAGATAATTTGATGCGTGAGGTA 60.183 38.462 0.00 0.00 0.00 3.08
254 255 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
255 256 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
256 257 5.523552 TGTGGTAGATAATTTGATGCGTGAG 59.476 40.000 0.00 0.00 0.00 3.51
257 258 5.423886 TGTGGTAGATAATTTGATGCGTGA 58.576 37.500 0.00 0.00 0.00 4.35
258 259 5.733226 TGTGGTAGATAATTTGATGCGTG 57.267 39.130 0.00 0.00 0.00 5.34
259 260 6.989759 TGTATGTGGTAGATAATTTGATGCGT 59.010 34.615 0.00 0.00 0.00 5.24
260 261 7.420184 TGTATGTGGTAGATAATTTGATGCG 57.580 36.000 0.00 0.00 0.00 4.73
342 343 3.325753 AGTCTCAGCTGCACCCCC 61.326 66.667 9.47 0.00 0.00 5.40
343 344 2.046507 CAGTCTCAGCTGCACCCC 60.047 66.667 9.47 0.00 0.00 4.95
344 345 2.046507 CCAGTCTCAGCTGCACCC 60.047 66.667 9.47 0.00 35.28 4.61
345 346 2.046507 CCCAGTCTCAGCTGCACC 60.047 66.667 9.47 0.00 35.28 5.01
346 347 2.745492 GCCCAGTCTCAGCTGCAC 60.745 66.667 9.47 8.22 35.28 4.57
347 348 2.926779 AGCCCAGTCTCAGCTGCA 60.927 61.111 9.47 0.00 34.99 4.41
348 349 2.125188 GAGCCCAGTCTCAGCTGC 60.125 66.667 9.47 0.00 36.87 5.25
349 350 3.385469 TGAGCCCAGTCTCAGCTG 58.615 61.111 7.63 7.63 38.11 4.24
353 354 0.972134 CACTTCTGAGCCCAGTCTCA 59.028 55.000 0.00 0.00 41.16 3.27
354 355 1.261480 TCACTTCTGAGCCCAGTCTC 58.739 55.000 0.00 0.00 41.16 3.36
355 356 1.722034 TTCACTTCTGAGCCCAGTCT 58.278 50.000 0.00 0.00 41.16 3.24
356 357 2.777832 ATTCACTTCTGAGCCCAGTC 57.222 50.000 0.00 0.00 41.16 3.51
357 358 3.307762 GGTAATTCACTTCTGAGCCCAGT 60.308 47.826 0.00 0.00 41.16 4.00
358 359 3.274288 GGTAATTCACTTCTGAGCCCAG 58.726 50.000 0.00 0.00 41.74 4.45
359 360 2.354704 CGGTAATTCACTTCTGAGCCCA 60.355 50.000 0.00 0.00 0.00 5.36
360 361 2.280628 CGGTAATTCACTTCTGAGCCC 58.719 52.381 0.00 0.00 0.00 5.19
361 362 2.973945 ACGGTAATTCACTTCTGAGCC 58.026 47.619 0.00 0.00 0.00 4.70
362 363 3.552294 GCTACGGTAATTCACTTCTGAGC 59.448 47.826 0.00 0.00 0.00 4.26
363 364 4.744570 TGCTACGGTAATTCACTTCTGAG 58.255 43.478 0.00 0.00 0.00 3.35
364 365 4.794278 TGCTACGGTAATTCACTTCTGA 57.206 40.909 0.00 0.00 0.00 3.27
365 366 6.422776 AAATGCTACGGTAATTCACTTCTG 57.577 37.500 0.00 0.00 0.00 3.02
366 367 6.761714 CCTAAATGCTACGGTAATTCACTTCT 59.238 38.462 0.00 0.00 0.00 2.85
367 368 6.511282 GCCTAAATGCTACGGTAATTCACTTC 60.511 42.308 0.00 0.00 0.00 3.01
368 369 5.296035 GCCTAAATGCTACGGTAATTCACTT 59.704 40.000 0.00 0.00 0.00 3.16
369 370 4.814771 GCCTAAATGCTACGGTAATTCACT 59.185 41.667 0.00 0.00 0.00 3.41
370 371 4.573201 TGCCTAAATGCTACGGTAATTCAC 59.427 41.667 0.00 0.00 0.00 3.18
371 372 4.771903 TGCCTAAATGCTACGGTAATTCA 58.228 39.130 0.00 0.00 0.00 2.57
372 373 5.054477 TCTGCCTAAATGCTACGGTAATTC 58.946 41.667 0.00 0.00 0.00 2.17
373 374 5.031066 TCTGCCTAAATGCTACGGTAATT 57.969 39.130 0.00 0.00 0.00 1.40
374 375 4.682778 TCTGCCTAAATGCTACGGTAAT 57.317 40.909 0.00 0.00 0.00 1.89
375 376 4.475051 TTCTGCCTAAATGCTACGGTAA 57.525 40.909 0.00 0.00 0.00 2.85
376 377 4.475051 TTTCTGCCTAAATGCTACGGTA 57.525 40.909 0.00 0.00 0.00 4.02
377 378 3.343941 TTTCTGCCTAAATGCTACGGT 57.656 42.857 0.00 0.00 0.00 4.83
378 379 4.695217 TTTTTCTGCCTAAATGCTACGG 57.305 40.909 0.00 0.00 0.00 4.02
379 380 8.181573 TCTTTATTTTTCTGCCTAAATGCTACG 58.818 33.333 0.00 0.00 0.00 3.51
380 381 9.290483 GTCTTTATTTTTCTGCCTAAATGCTAC 57.710 33.333 0.00 0.00 0.00 3.58
458 459 1.409427 ACGCTTATTCTTCCTCTCCCG 59.591 52.381 0.00 0.00 0.00 5.14
750 783 4.664677 GACACCGGTGAGCGCTGT 62.665 66.667 40.21 16.93 0.00 4.40
763 796 1.250840 GGGGTTTGCTCCATGGACAC 61.251 60.000 11.44 6.71 34.61 3.67
799 841 0.381089 CCTCATACTCGTCCACGGAC 59.619 60.000 6.12 6.12 41.40 4.79
811 884 1.263484 TCGAGATCGTTCGCCTCATAC 59.737 52.381 1.70 0.00 40.29 2.39
1201 1363 0.694771 TTGATCCTGAGCTTGTGCCT 59.305 50.000 0.00 0.00 40.80 4.75
1245 1414 4.357947 ACGTCGGCGATGCACACT 62.358 61.111 27.66 6.18 42.00 3.55
1510 1679 1.000283 CTCGCCCTCGCAGAATATCTT 60.000 52.381 0.00 0.00 34.09 2.40
1846 2015 0.693049 ATGGAGGGTGCGTTCTTCTT 59.307 50.000 0.00 0.00 0.00 2.52
2454 2624 3.416156 GAATTTCTCTGGGTGCTCAACT 58.584 45.455 0.00 0.00 0.00 3.16
2457 2627 1.623311 TCGAATTTCTCTGGGTGCTCA 59.377 47.619 0.00 0.00 0.00 4.26
2703 2873 0.109532 TTTGGGTTGCGATGGAGTCA 59.890 50.000 0.00 0.00 0.00 3.41
3044 3215 1.153369 ATCGCGTACTTGCATGCCT 60.153 52.632 16.68 0.00 34.15 4.75
3048 3219 1.405463 TCTCTGATCGCGTACTTGCAT 59.595 47.619 5.77 0.00 34.15 3.96
3060 3231 6.652481 TGTCCTTTTCAATGTCTTCTCTGATC 59.348 38.462 0.00 0.00 0.00 2.92
3127 3299 2.943978 CGTCCTCTTCCTGCCCGTT 61.944 63.158 0.00 0.00 0.00 4.44
3128 3300 3.382832 CGTCCTCTTCCTGCCCGT 61.383 66.667 0.00 0.00 0.00 5.28
3198 3373 2.049063 GTGTCGCTCACGCTCCTT 60.049 61.111 0.00 0.00 39.84 3.36
3225 3400 1.574702 GCGCGAAGGCTTGGTACTTT 61.575 55.000 12.10 0.00 36.88 2.66
3372 3547 9.653287 CACTTCATTCTCTAACAATGGTTACTA 57.347 33.333 0.00 0.00 38.45 1.82
3389 3564 8.579863 AGCCTATAATATTTTGGCACTTCATTC 58.420 33.333 20.53 0.00 45.42 2.67
3518 3740 6.120507 AGTTTTGAGAGTCTAGGAAAGCAT 57.879 37.500 0.00 0.00 0.00 3.79
3535 3777 5.407387 TCAGTTAACGCTTAGGCTAGTTTTG 59.593 40.000 0.00 2.09 36.09 2.44
3609 4024 5.182760 GTGATCAACAAAGAGGAAGCAGAAT 59.817 40.000 0.00 0.00 0.00 2.40
3907 4333 6.948886 TCCTTGACTTATCTGTTCTAGACTGT 59.051 38.462 0.00 0.00 38.49 3.55
3911 4337 9.090103 TCTTTTCCTTGACTTATCTGTTCTAGA 57.910 33.333 0.00 0.00 40.37 2.43
3923 4349 2.175715 AGGCCACTCTTTTCCTTGACTT 59.824 45.455 5.01 0.00 0.00 3.01
4022 4448 5.697633 CCACAAGCACTGCAAGAAATAATTT 59.302 36.000 3.30 0.00 37.43 1.82
4025 4451 3.888323 TCCACAAGCACTGCAAGAAATAA 59.112 39.130 3.30 0.00 37.43 1.40
4068 4514 8.391106 GTGGATATACACTAGCAAAGAACTTTG 58.609 37.037 19.09 19.09 43.37 2.77
4080 4526 7.552458 TTTGCACATTGTGGATATACACTAG 57.448 36.000 18.90 10.75 41.84 2.57
4135 4581 2.202298 CCAGTTTTAAGCGCGCCG 60.202 61.111 30.33 7.49 0.00 6.46
4136 4582 0.318360 AAACCAGTTTTAAGCGCGCC 60.318 50.000 30.33 11.57 0.00 6.53
4137 4583 0.775861 CAAACCAGTTTTAAGCGCGC 59.224 50.000 26.66 26.66 0.00 6.86
4138 4584 0.775861 GCAAACCAGTTTTAAGCGCG 59.224 50.000 0.00 0.00 0.00 6.86
4139 4585 0.775861 CGCAAACCAGTTTTAAGCGC 59.224 50.000 11.76 0.00 36.32 5.92
4140 4586 1.404477 CCGCAAACCAGTTTTAAGCG 58.596 50.000 15.49 15.49 40.12 4.68
4141 4587 1.136690 GCCGCAAACCAGTTTTAAGC 58.863 50.000 0.00 0.00 0.00 3.09
4142 4588 2.124122 GTGCCGCAAACCAGTTTTAAG 58.876 47.619 0.00 0.00 0.00 1.85
4143 4589 1.534175 CGTGCCGCAAACCAGTTTTAA 60.534 47.619 0.00 0.00 0.00 1.52
4144 4590 0.029567 CGTGCCGCAAACCAGTTTTA 59.970 50.000 0.00 0.00 0.00 1.52
4145 4591 1.226831 CGTGCCGCAAACCAGTTTT 60.227 52.632 0.00 0.00 0.00 2.43
4146 4592 2.411290 CGTGCCGCAAACCAGTTT 59.589 55.556 0.00 0.00 0.00 2.66
4163 4609 0.734889 CATCAAACCTGACGATGGGC 59.265 55.000 0.00 0.00 34.24 5.36
4164 4610 1.739466 CACATCAAACCTGACGATGGG 59.261 52.381 0.00 0.00 40.68 4.00
4165 4611 1.739466 CCACATCAAACCTGACGATGG 59.261 52.381 0.00 0.00 40.68 3.51
4166 4612 1.131126 GCCACATCAAACCTGACGATG 59.869 52.381 0.00 0.00 41.84 3.84
4167 4613 1.453155 GCCACATCAAACCTGACGAT 58.547 50.000 0.00 0.00 33.30 3.73
4168 4614 0.948623 CGCCACATCAAACCTGACGA 60.949 55.000 0.00 0.00 33.30 4.20
4169 4615 1.497278 CGCCACATCAAACCTGACG 59.503 57.895 0.00 0.00 33.30 4.35
4170 4616 1.210155 GCGCCACATCAAACCTGAC 59.790 57.895 0.00 0.00 33.30 3.51
4171 4617 1.228094 TGCGCCACATCAAACCTGA 60.228 52.632 4.18 0.00 35.56 3.86
4172 4618 1.081242 GTGCGCCACATCAAACCTG 60.081 57.895 4.18 0.00 34.08 4.00
4173 4619 1.518056 CTGTGCGCCACATCAAACCT 61.518 55.000 4.18 0.00 43.71 3.50
4174 4620 1.081242 CTGTGCGCCACATCAAACC 60.081 57.895 4.18 0.00 43.71 3.27
4175 4621 1.730547 GCTGTGCGCCACATCAAAC 60.731 57.895 4.18 0.00 43.71 2.93
4176 4622 2.644418 GCTGTGCGCCACATCAAA 59.356 55.556 4.18 0.00 43.71 2.69
4204 4650 1.531883 GCTGTATTTTAGCACGGCTGC 60.532 52.381 8.44 0.00 42.57 5.25
4205 4651 1.267532 CGCTGTATTTTAGCACGGCTG 60.268 52.381 8.44 0.00 43.47 4.85
4206 4652 1.006832 CGCTGTATTTTAGCACGGCT 58.993 50.000 3.87 3.87 43.47 5.52
4207 4653 1.003851 TCGCTGTATTTTAGCACGGC 58.996 50.000 0.00 0.00 42.46 5.68
4208 4654 3.607439 CATTCGCTGTATTTTAGCACGG 58.393 45.455 0.00 0.00 41.18 4.94
4209 4655 3.029074 GCATTCGCTGTATTTTAGCACG 58.971 45.455 0.00 0.00 41.18 5.34
4210 4656 4.014847 TGCATTCGCTGTATTTTAGCAC 57.985 40.909 0.00 0.00 41.18 4.40
4211 4657 3.487376 GCTGCATTCGCTGTATTTTAGCA 60.487 43.478 0.00 0.00 41.18 3.49
4212 4658 3.038710 GCTGCATTCGCTGTATTTTAGC 58.961 45.455 0.00 0.00 39.17 3.09
4213 4659 3.283256 CGCTGCATTCGCTGTATTTTAG 58.717 45.455 0.00 0.00 39.17 1.85
4214 4660 3.317744 CGCTGCATTCGCTGTATTTTA 57.682 42.857 0.00 0.00 39.17 1.52
4215 4661 2.178474 CGCTGCATTCGCTGTATTTT 57.822 45.000 0.00 0.00 39.17 1.82
4216 4662 3.903876 CGCTGCATTCGCTGTATTT 57.096 47.368 0.00 0.00 39.17 1.40
4239 4685 4.531912 CATTGCGCCAGCTGCTCG 62.532 66.667 18.40 18.40 45.42 5.03
4240 4686 3.392595 GACATTGCGCCAGCTGCTC 62.393 63.158 8.66 0.71 45.42 4.26
4241 4687 3.437795 GACATTGCGCCAGCTGCT 61.438 61.111 8.66 0.00 45.42 4.24
4242 4688 2.552585 AATGACATTGCGCCAGCTGC 62.553 55.000 8.66 2.87 45.42 5.25
4243 4689 0.108992 AAATGACATTGCGCCAGCTG 60.109 50.000 6.78 6.78 45.42 4.24
4244 4690 0.604578 AAAATGACATTGCGCCAGCT 59.395 45.000 4.18 0.00 45.42 4.24
4245 4691 0.717224 CAAAATGACATTGCGCCAGC 59.283 50.000 4.18 0.00 45.41 4.85
4246 4692 1.067706 TCCAAAATGACATTGCGCCAG 60.068 47.619 4.18 0.00 0.00 4.85
4247 4693 0.964700 TCCAAAATGACATTGCGCCA 59.035 45.000 4.18 0.00 0.00 5.69
4248 4694 1.336702 TGTCCAAAATGACATTGCGCC 60.337 47.619 4.18 0.00 40.22 6.53
4249 4695 1.720852 GTGTCCAAAATGACATTGCGC 59.279 47.619 0.00 0.00 46.20 6.09
4250 4696 3.010624 TGTGTCCAAAATGACATTGCG 57.989 42.857 0.34 0.00 46.20 4.85
4251 4697 5.731599 TTTTGTGTCCAAAATGACATTGC 57.268 34.783 0.34 0.00 46.20 3.56
4261 4707 8.777865 TGTGTGAAATTTATTTTGTGTCCAAA 57.222 26.923 0.00 0.00 38.77 3.28
4262 4708 8.954950 ATGTGTGAAATTTATTTTGTGTCCAA 57.045 26.923 0.00 0.00 0.00 3.53
4263 4709 8.200120 TGATGTGTGAAATTTATTTTGTGTCCA 58.800 29.630 0.00 0.00 0.00 4.02
4264 4710 8.487176 GTGATGTGTGAAATTTATTTTGTGTCC 58.513 33.333 0.00 0.00 0.00 4.02
4265 4711 9.029243 TGTGATGTGTGAAATTTATTTTGTGTC 57.971 29.630 0.00 0.00 0.00 3.67
4266 4712 8.939201 TGTGATGTGTGAAATTTATTTTGTGT 57.061 26.923 0.00 0.00 0.00 3.72
4274 4720 9.645059 TCTTTGTTTTGTGATGTGTGAAATTTA 57.355 25.926 0.00 0.00 0.00 1.40
4275 4721 8.442384 GTCTTTGTTTTGTGATGTGTGAAATTT 58.558 29.630 0.00 0.00 0.00 1.82
4276 4722 7.601886 TGTCTTTGTTTTGTGATGTGTGAAATT 59.398 29.630 0.00 0.00 0.00 1.82
4277 4723 7.095910 TGTCTTTGTTTTGTGATGTGTGAAAT 58.904 30.769 0.00 0.00 0.00 2.17
4278 4724 6.450545 TGTCTTTGTTTTGTGATGTGTGAAA 58.549 32.000 0.00 0.00 0.00 2.69
4279 4725 6.018589 TGTCTTTGTTTTGTGATGTGTGAA 57.981 33.333 0.00 0.00 0.00 3.18
4280 4726 5.635417 TGTCTTTGTTTTGTGATGTGTGA 57.365 34.783 0.00 0.00 0.00 3.58
4281 4727 5.232626 CCATGTCTTTGTTTTGTGATGTGTG 59.767 40.000 0.00 0.00 0.00 3.82
4282 4728 5.350633 CCATGTCTTTGTTTTGTGATGTGT 58.649 37.500 0.00 0.00 0.00 3.72
4283 4729 4.209703 GCCATGTCTTTGTTTTGTGATGTG 59.790 41.667 0.00 0.00 0.00 3.21
4284 4730 4.141981 TGCCATGTCTTTGTTTTGTGATGT 60.142 37.500 0.00 0.00 0.00 3.06
4285 4731 4.370049 TGCCATGTCTTTGTTTTGTGATG 58.630 39.130 0.00 0.00 0.00 3.07
4286 4732 4.669206 TGCCATGTCTTTGTTTTGTGAT 57.331 36.364 0.00 0.00 0.00 3.06
4287 4733 4.669206 ATGCCATGTCTTTGTTTTGTGA 57.331 36.364 0.00 0.00 0.00 3.58
4288 4734 8.706492 ATTATATGCCATGTCTTTGTTTTGTG 57.294 30.769 0.00 0.00 0.00 3.33
4289 4735 9.723601 AAATTATATGCCATGTCTTTGTTTTGT 57.276 25.926 0.00 0.00 0.00 2.83
4312 4758 9.260002 GGTCATCAACTTGTTTGTGATTTAAAT 57.740 29.630 0.00 0.00 36.49 1.40
4313 4759 8.253810 TGGTCATCAACTTGTTTGTGATTTAAA 58.746 29.630 0.00 0.00 36.49 1.52
4314 4760 7.776107 TGGTCATCAACTTGTTTGTGATTTAA 58.224 30.769 0.00 0.00 36.49 1.52
4315 4761 7.340122 TGGTCATCAACTTGTTTGTGATTTA 57.660 32.000 0.00 0.00 36.49 1.40
4316 4762 6.219417 TGGTCATCAACTTGTTTGTGATTT 57.781 33.333 0.00 0.00 36.49 2.17
4317 4763 5.850557 TGGTCATCAACTTGTTTGTGATT 57.149 34.783 0.00 0.00 36.49 2.57
4318 4764 5.850557 TTGGTCATCAACTTGTTTGTGAT 57.149 34.783 2.41 0.00 36.49 3.06
4319 4765 5.651387 TTTGGTCATCAACTTGTTTGTGA 57.349 34.783 0.00 0.00 36.49 3.58
4320 4766 5.868801 ACTTTTGGTCATCAACTTGTTTGTG 59.131 36.000 0.00 0.00 36.49 3.33
4321 4767 6.036577 ACTTTTGGTCATCAACTTGTTTGT 57.963 33.333 0.00 0.00 36.49 2.83
4322 4768 6.589523 TGAACTTTTGGTCATCAACTTGTTTG 59.410 34.615 0.00 0.00 41.97 2.93
4323 4769 6.696411 TGAACTTTTGGTCATCAACTTGTTT 58.304 32.000 0.00 0.00 41.97 2.83
4324 4770 6.279513 TGAACTTTTGGTCATCAACTTGTT 57.720 33.333 0.00 0.00 41.97 2.83
4325 4771 5.913137 TGAACTTTTGGTCATCAACTTGT 57.087 34.783 0.00 0.00 41.97 3.16
4335 4781 4.278419 ACTTGTAGGCATGAACTTTTGGTC 59.722 41.667 0.00 0.00 36.49 4.02
4336 4782 4.215109 ACTTGTAGGCATGAACTTTTGGT 58.785 39.130 0.00 0.00 0.00 3.67
4337 4783 4.853924 ACTTGTAGGCATGAACTTTTGG 57.146 40.909 0.00 0.00 0.00 3.28
4338 4784 5.830912 TGAACTTGTAGGCATGAACTTTTG 58.169 37.500 0.00 0.00 0.00 2.44
4339 4785 6.463995 TTGAACTTGTAGGCATGAACTTTT 57.536 33.333 0.00 0.00 0.00 2.27
4340 4786 6.463995 TTTGAACTTGTAGGCATGAACTTT 57.536 33.333 0.00 0.00 0.00 2.66
4341 4787 6.655078 ATTTGAACTTGTAGGCATGAACTT 57.345 33.333 0.00 0.00 0.00 2.66
4342 4788 6.265196 TGAATTTGAACTTGTAGGCATGAACT 59.735 34.615 0.00 0.00 0.00 3.01
4343 4789 6.446318 TGAATTTGAACTTGTAGGCATGAAC 58.554 36.000 0.00 0.00 0.00 3.18
4344 4790 6.647334 TGAATTTGAACTTGTAGGCATGAA 57.353 33.333 0.00 0.00 0.00 2.57
4345 4791 6.623486 CATGAATTTGAACTTGTAGGCATGA 58.377 36.000 0.00 0.00 33.23 3.07
4346 4792 6.880822 CATGAATTTGAACTTGTAGGCATG 57.119 37.500 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.