Multiple sequence alignment - TraesCS1B01G259000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G259000 chr1B 100.000 9863 0 0 1 9863 456273008 456263146 0.000000e+00 18214.0
1 TraesCS1B01G259000 chr1B 91.124 1397 82 22 5250 6614 509125095 509126481 0.000000e+00 1855.0
2 TraesCS1B01G259000 chr1B 89.467 788 53 16 7085 7843 509126708 509127494 0.000000e+00 968.0
3 TraesCS1B01G259000 chr1B 95.259 232 11 0 6818 7049 509126479 509126710 1.560000e-97 368.0
4 TraesCS1B01G259000 chr1D 96.275 4590 131 14 262 4841 340666486 340661927 0.000000e+00 7492.0
5 TraesCS1B01G259000 chr1D 94.690 1808 69 12 4923 6703 340661928 340660121 0.000000e+00 2782.0
6 TraesCS1B01G259000 chr1D 93.859 1205 49 12 6701 7882 340660040 340658838 0.000000e+00 1792.0
7 TraesCS1B01G259000 chr1D 92.314 1236 64 5 8220 9453 340658344 340657138 0.000000e+00 1727.0
8 TraesCS1B01G259000 chr1D 95.268 317 13 1 1 315 340666796 340666480 1.480000e-137 501.0
9 TraesCS1B01G259000 chr1D 94.118 153 9 0 8068 8220 340658590 340658438 5.960000e-57 233.0
10 TraesCS1B01G259000 chr1D 88.827 179 17 3 7883 8059 340658802 340658625 6.000000e-52 217.0
11 TraesCS1B01G259000 chr1D 97.753 89 2 0 4836 4924 440050446 440050358 4.770000e-33 154.0
12 TraesCS1B01G259000 chr1D 92.523 107 3 4 4831 4933 239335491 239335386 2.220000e-31 148.0
13 TraesCS1B01G259000 chr1A 96.235 4064 110 14 788 4841 440449531 440445501 0.000000e+00 6617.0
14 TraesCS1B01G259000 chr1A 93.333 3015 131 40 4923 7880 440445502 440442501 0.000000e+00 4390.0
15 TraesCS1B01G259000 chr1A 91.247 1508 97 16 8220 9723 440442011 440440535 0.000000e+00 2021.0
16 TraesCS1B01G259000 chr1A 95.734 797 26 4 1 795 440455674 440454884 0.000000e+00 1277.0
17 TraesCS1B01G259000 chr1A 86.150 361 27 6 7883 8220 440442463 440442103 1.560000e-97 368.0
18 TraesCS1B01G259000 chr6B 83.013 2031 265 55 896 2891 440787613 440785628 0.000000e+00 1766.0
19 TraesCS1B01G259000 chr6B 89.944 1074 64 20 6628 7662 720713488 720712420 0.000000e+00 1345.0
20 TraesCS1B01G259000 chr6B 91.543 946 55 7 5379 6305 720714451 720713512 0.000000e+00 1280.0
21 TraesCS1B01G259000 chr6B 81.838 1360 175 47 1183 2513 444307470 444306154 0.000000e+00 1077.0
22 TraesCS1B01G259000 chr6B 90.347 808 58 8 4042 4841 720715899 720715104 0.000000e+00 1042.0
23 TraesCS1B01G259000 chr6B 90.089 787 52 17 7102 7871 720760924 720760147 0.000000e+00 998.0
24 TraesCS1B01G259000 chr6B 87.835 485 41 8 4923 5396 720715105 720714628 4.030000e-153 553.0
25 TraesCS1B01G259000 chr6B 87.193 367 38 5 4072 4437 440778611 440778253 9.220000e-110 409.0
26 TraesCS1B01G259000 chr6B 93.939 132 8 0 3913 4044 720716122 720715991 6.040000e-47 200.0
27 TraesCS1B01G259000 chr6B 86.782 174 22 1 3559 3731 440779602 440779429 1.010000e-44 193.0
28 TraesCS1B01G259000 chr6B 84.314 102 16 0 516 617 440787953 440787852 6.300000e-17 100.0
29 TraesCS1B01G259000 chr6B 83.333 102 17 0 516 617 444308505 444308404 2.930000e-15 95.3
30 TraesCS1B01G259000 chr6A 82.385 2038 264 64 896 2891 402960215 402958231 0.000000e+00 1687.0
31 TraesCS1B01G259000 chr6A 89.901 1307 84 24 6609 7876 615200373 615201670 0.000000e+00 1639.0
32 TraesCS1B01G259000 chr6A 89.924 1052 68 18 5693 6733 615199356 615200380 0.000000e+00 1321.0
33 TraesCS1B01G259000 chr6A 87.037 486 38 13 4923 5396 615198733 615199205 8.780000e-145 525.0
34 TraesCS1B01G259000 chr6A 89.119 193 20 1 8220 8412 615202065 615202256 1.280000e-58 239.0
35 TraesCS1B01G259000 chr6A 89.349 169 17 1 7883 8050 615201711 615201879 2.790000e-50 211.0
36 TraesCS1B01G259000 chr6A 86.782 174 22 1 3559 3731 402957665 402957492 1.010000e-44 193.0
37 TraesCS1B01G259000 chr6A 83.168 101 17 0 517 617 402960553 402960453 1.050000e-14 93.5
38 TraesCS1B01G259000 chrUn 89.847 1310 85 26 6609 7879 186909839 186908539 0.000000e+00 1639.0
39 TraesCS1B01G259000 chrUn 89.847 1310 84 27 6609 7879 267269592 267268293 0.000000e+00 1637.0
40 TraesCS1B01G259000 chrUn 90.000 1050 70 16 5693 6733 267270608 267269585 0.000000e+00 1325.0
41 TraesCS1B01G259000 chrUn 89.924 1052 68 18 5693 6733 186910856 186909832 0.000000e+00 1321.0
42 TraesCS1B01G259000 chrUn 88.971 943 59 15 3913 4841 186912389 186911478 0.000000e+00 1123.0
43 TraesCS1B01G259000 chrUn 88.739 888 56 14 3967 4841 267272086 267271230 0.000000e+00 1046.0
44 TraesCS1B01G259000 chrUn 88.626 888 57 14 3967 4841 400988057 400988913 0.000000e+00 1040.0
45 TraesCS1B01G259000 chrUn 90.076 655 43 13 7245 7879 324357617 324356965 0.000000e+00 830.0
46 TraesCS1B01G259000 chrUn 90.076 655 43 13 7245 7879 425038972 425038320 0.000000e+00 830.0
47 TraesCS1B01G259000 chrUn 87.037 486 38 12 4923 5396 186911479 186911007 8.780000e-145 525.0
48 TraesCS1B01G259000 chrUn 87.037 486 38 12 4923 5396 267271231 267270759 8.780000e-145 525.0
49 TraesCS1B01G259000 chrUn 87.037 486 38 13 4923 5396 400988912 400989384 8.780000e-145 525.0
50 TraesCS1B01G259000 chrUn 88.442 199 22 1 8220 8418 186908147 186907950 1.280000e-58 239.0
51 TraesCS1B01G259000 chrUn 88.442 199 22 1 8220 8418 267267901 267267704 1.280000e-58 239.0
52 TraesCS1B01G259000 chrUn 88.442 199 22 1 8220 8418 324356573 324356376 1.280000e-58 239.0
53 TraesCS1B01G259000 chrUn 88.202 178 20 1 7883 8059 186908501 186908324 2.790000e-50 211.0
54 TraesCS1B01G259000 chrUn 88.202 178 20 1 7883 8059 267268255 267268078 2.790000e-50 211.0
55 TraesCS1B01G259000 chrUn 88.202 178 20 1 7883 8059 324356927 324356750 2.790000e-50 211.0
56 TraesCS1B01G259000 chrUn 89.349 169 17 1 8220 8388 425037928 425037761 2.790000e-50 211.0
57 TraesCS1B01G259000 chrUn 88.202 178 20 1 7883 8059 425038282 425038105 2.790000e-50 211.0
58 TraesCS1B01G259000 chr5A 88.419 1252 72 20 6871 8050 602837297 602836047 0.000000e+00 1441.0
59 TraesCS1B01G259000 chr5A 91.328 934 56 14 5693 6617 602840170 602839253 0.000000e+00 1253.0
60 TraesCS1B01G259000 chr5A 90.967 941 61 12 3913 4841 602841725 602840797 0.000000e+00 1245.0
61 TraesCS1B01G259000 chr5A 88.247 485 39 9 4923 5396 602840798 602840321 1.860000e-156 564.0
62 TraesCS1B01G259000 chr5A 89.000 200 20 2 8220 8418 602835861 602835663 7.650000e-61 246.0
63 TraesCS1B01G259000 chr5A 94.595 74 4 0 8487 8560 602835672 602835599 2.250000e-21 115.0
64 TraesCS1B01G259000 chr6D 82.200 1618 217 46 924 2513 283458078 283456504 0.000000e+00 1327.0
65 TraesCS1B01G259000 chr6D 83.930 1201 157 25 896 2078 278648375 278647193 0.000000e+00 1116.0
66 TraesCS1B01G259000 chr6D 84.522 659 76 15 5783 6436 278643544 278642907 6.500000e-176 628.0
67 TraesCS1B01G259000 chr6D 83.156 659 76 23 2246 2891 278647002 278646366 4.000000e-158 569.0
68 TraesCS1B01G259000 chr6D 86.921 367 37 6 4072 4437 278644913 278644557 1.540000e-107 401.0
69 TraesCS1B01G259000 chr6D 90.604 149 14 0 3583 3731 278645743 278645595 2.170000e-46 198.0
70 TraesCS1B01G259000 chr6D 97.321 112 3 0 4069 4180 456941815 456941926 3.640000e-44 191.0
71 TraesCS1B01G259000 chr6D 93.939 99 5 1 4835 4932 163130339 163130241 2.220000e-31 148.0
72 TraesCS1B01G259000 chr6D 96.591 88 3 0 4837 4924 95294902 95294989 7.980000e-31 147.0
73 TraesCS1B01G259000 chr6D 84.314 102 16 0 516 617 278648714 278648613 6.300000e-17 100.0
74 TraesCS1B01G259000 chr6D 82.353 102 17 1 516 617 283458447 283458347 4.910000e-13 87.9
75 TraesCS1B01G259000 chr3B 93.578 109 3 2 4828 4933 265853371 265853264 1.030000e-34 159.0
76 TraesCS1B01G259000 chr3B 75.072 349 63 14 6072 6414 558081207 558080877 3.710000e-29 141.0
77 TraesCS1B01G259000 chr4D 95.833 96 2 2 4839 4933 333063272 333063366 4.770000e-33 154.0
78 TraesCS1B01G259000 chr4D 94.737 95 3 2 4840 4933 218516283 218516190 7.980000e-31 147.0
79 TraesCS1B01G259000 chr2D 96.703 91 3 0 4835 4925 436111428 436111338 1.720000e-32 152.0
80 TraesCS1B01G259000 chr2D 94.845 97 4 1 4828 4924 186755934 186756029 6.170000e-32 150.0
81 TraesCS1B01G259000 chr2D 90.654 107 10 0 4831 4937 217496898 217497004 1.030000e-29 143.0
82 TraesCS1B01G259000 chr5D 94.845 97 4 1 4834 4930 87186603 87186508 6.170000e-32 150.0
83 TraesCS1B01G259000 chr5D 95.745 94 3 1 4840 4932 240428042 240428135 6.170000e-32 150.0
84 TraesCS1B01G259000 chr5D 95.699 93 3 1 4840 4931 545227872 545227780 2.220000e-31 148.0
85 TraesCS1B01G259000 chr7D 96.154 52 2 0 8441 8492 79629891 79629942 1.770000e-12 86.1
86 TraesCS1B01G259000 chr7D 100.000 30 0 0 8463 8492 193409914 193409943 1.000000e-03 56.5
87 TraesCS1B01G259000 chr5B 83.146 89 8 6 8412 8497 43928045 43927961 3.820000e-09 75.0
88 TraesCS1B01G259000 chr5B 91.837 49 4 0 8443 8491 245966861 245966813 1.780000e-07 69.4
89 TraesCS1B01G259000 chr7B 92.857 42 1 2 9820 9861 517121562 517121523 1.070000e-04 60.2
90 TraesCS1B01G259000 chr3D 97.059 34 1 0 8464 8497 614205202 614205169 3.850000e-04 58.4
91 TraesCS1B01G259000 chr3D 94.595 37 1 1 8463 8499 520220580 520220615 1.000000e-03 56.5
92 TraesCS1B01G259000 chr4B 90.698 43 1 3 8464 8503 74870965 74870923 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G259000 chr1B 456263146 456273008 9862 True 18214.000000 18214 100.000000 1 9863 1 chr1B.!!$R1 9862
1 TraesCS1B01G259000 chr1B 509125095 509127494 2399 False 1063.666667 1855 91.950000 5250 7843 3 chr1B.!!$F1 2593
2 TraesCS1B01G259000 chr1D 340657138 340666796 9658 True 2106.285714 7492 93.621571 1 9453 7 chr1D.!!$R3 9452
3 TraesCS1B01G259000 chr1A 440440535 440449531 8996 True 3349.000000 6617 91.741250 788 9723 4 chr1A.!!$R2 8935
4 TraesCS1B01G259000 chr1A 440454884 440455674 790 True 1277.000000 1277 95.734000 1 795 1 chr1A.!!$R1 794
5 TraesCS1B01G259000 chr6B 720760147 720760924 777 True 998.000000 998 90.089000 7102 7871 1 chr6B.!!$R1 769
6 TraesCS1B01G259000 chr6B 440785628 440787953 2325 True 933.000000 1766 83.663500 516 2891 2 chr6B.!!$R3 2375
7 TraesCS1B01G259000 chr6B 720712420 720716122 3702 True 884.000000 1345 90.721600 3913 7662 5 chr6B.!!$R5 3749
8 TraesCS1B01G259000 chr6B 444306154 444308505 2351 True 586.150000 1077 82.585500 516 2513 2 chr6B.!!$R4 1997
9 TraesCS1B01G259000 chr6B 440778253 440779602 1349 True 301.000000 409 86.987500 3559 4437 2 chr6B.!!$R2 878
10 TraesCS1B01G259000 chr6A 615198733 615202256 3523 False 787.000000 1639 89.066000 4923 8412 5 chr6A.!!$F1 3489
11 TraesCS1B01G259000 chr6A 402957492 402960553 3061 True 657.833333 1687 84.111667 517 3731 3 chr6A.!!$R1 3214
12 TraesCS1B01G259000 chrUn 186907950 186912389 4439 True 843.000000 1639 88.737167 3913 8418 6 chrUn.!!$R1 4505
13 TraesCS1B01G259000 chrUn 267267704 267272086 4382 True 830.500000 1637 88.711167 3967 8418 6 chrUn.!!$R2 4451
14 TraesCS1B01G259000 chrUn 400988057 400989384 1327 False 782.500000 1040 87.831500 3967 5396 2 chrUn.!!$F1 1429
15 TraesCS1B01G259000 chrUn 324356376 324357617 1241 True 426.666667 830 88.906667 7245 8418 3 chrUn.!!$R3 1173
16 TraesCS1B01G259000 chrUn 425037761 425038972 1211 True 417.333333 830 89.209000 7245 8388 3 chrUn.!!$R4 1143
17 TraesCS1B01G259000 chr5A 602835599 602841725 6126 True 810.666667 1441 90.426000 3913 8560 6 chr5A.!!$R1 4647
18 TraesCS1B01G259000 chr6D 283456504 283458447 1943 True 707.450000 1327 82.276500 516 2513 2 chr6D.!!$R3 1997
19 TraesCS1B01G259000 chr6D 278642907 278648714 5807 True 502.000000 1116 85.574500 516 6436 6 chr6D.!!$R2 5920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 1.066143 ACAGAACTACCCATTCGCCTG 60.066 52.381 0.0 0.0 0.00 4.85 F
1668 2140 1.186917 TTGCTGCCCCATTTCCTGTG 61.187 55.000 0.0 0.0 0.00 3.66 F
2146 2621 2.427812 TGTCAGAACCTACGACACACAA 59.572 45.455 0.0 0.0 34.83 3.33 F
3747 4491 1.659622 TTGCCAGCATCATTCCTGCG 61.660 55.000 0.0 0.0 44.38 5.18 F
4300 5586 0.321564 TGAAACCCGAGGATGCTGTG 60.322 55.000 0.0 0.0 0.00 3.66 F
4926 6343 1.122019 ATGGGACGGAGGGAGTATGC 61.122 60.000 0.0 0.0 0.00 3.14 F
5562 7206 0.741915 GGACACCAAAGCCGTGAAAA 59.258 50.000 0.0 0.0 35.17 2.29 F
6797 8770 0.037734 CCAGCTTTTCCGGTAACCCT 59.962 55.000 0.0 0.0 0.00 4.34 F
7363 11269 0.744874 TCTATGCCTACAGTCGCCAC 59.255 55.000 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2395 0.941542 ACGGGACAACAATGAACACG 59.058 50.000 0.00 0.0 38.45 4.49 R
2771 3283 1.614903 TGCTCTGCAGGAAAACATTGG 59.385 47.619 15.13 0.0 33.32 3.16 R
3937 5070 2.416431 GCTGAGGCAATGGATGTTGTTC 60.416 50.000 0.00 0.0 38.54 3.18 R
4769 6183 0.405198 TGAGAAGAAGGGCATGGCAA 59.595 50.000 22.06 0.0 0.00 4.52 R
5545 7189 1.135228 GTGTTTTCACGGCTTTGGTGT 60.135 47.619 0.00 0.0 41.13 4.16 R
6767 8729 2.357777 GGAAAAGCTGGGTATAAGGCCA 60.358 50.000 5.01 0.0 0.00 5.36 R
7363 11269 1.207329 CTCCAACTAAGACTTCGGGGG 59.793 57.143 0.00 0.0 0.00 5.40 R
8019 12013 0.820074 CGTCAGCGGGGAGTAGAGAT 60.820 60.000 0.00 0.0 0.00 2.75 R
8945 13068 0.177836 ATACATGCCGCACTGCTACA 59.822 50.000 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.199723 TGCTTACATGGCCATGATCTTTAA 58.800 37.500 44.72 30.61 41.20 1.52
61 62 1.066143 ACAGAACTACCCATTCGCCTG 60.066 52.381 0.00 0.00 0.00 4.85
114 115 4.052159 TCCAAACCTACGTTTCGTAACA 57.948 40.909 5.74 0.00 41.82 2.41
115 116 4.630111 TCCAAACCTACGTTTCGTAACAT 58.370 39.130 5.74 0.00 41.82 2.71
155 156 6.374333 TGATACAAATTGCCCACTTCTTAGAC 59.626 38.462 0.00 0.00 0.00 2.59
180 181 7.040409 ACTGTCACCTTTTCCTCAATTGATTAC 60.040 37.037 8.96 0.00 0.00 1.89
293 343 2.420022 GCCACATCTGCTCAATTTACGT 59.580 45.455 0.00 0.00 0.00 3.57
330 380 9.768662 ATTCTGCCATTATTAATTCATTGAACC 57.231 29.630 0.15 0.00 0.00 3.62
343 393 8.472007 AATTCATTGAACCTAAACCTAACACA 57.528 30.769 0.15 0.00 0.00 3.72
565 615 4.156556 TGAACTAATGCTAAGCTTGCTTGG 59.843 41.667 17.04 15.08 0.00 3.61
799 850 4.082026 GCCTTGAAATGAAATAGTGCCTGT 60.082 41.667 0.00 0.00 0.00 4.00
816 867 3.550030 GCCTGTGGTTGTGTGTTGTAATC 60.550 47.826 0.00 0.00 0.00 1.75
818 869 3.621558 TGTGGTTGTGTGTTGTAATCCA 58.378 40.909 0.00 0.00 0.00 3.41
894 946 7.191593 TGTCTTCTTACTAACCCCCTTTATC 57.808 40.000 0.00 0.00 0.00 1.75
1668 2140 1.186917 TTGCTGCCCCATTTCCTGTG 61.187 55.000 0.00 0.00 0.00 3.66
1680 2152 5.222631 CCATTTCCTGTGCTCTTTTAACAC 58.777 41.667 0.00 0.00 34.86 3.32
1923 2395 2.757077 AGGCTGGTACCTGTTGCC 59.243 61.111 22.27 22.27 39.13 4.52
2146 2621 2.427812 TGTCAGAACCTACGACACACAA 59.572 45.455 0.00 0.00 34.83 3.33
2173 2648 2.536066 TGCCCTGTTCTCTTGCTAGTA 58.464 47.619 0.00 0.00 0.00 1.82
2726 3238 5.652452 AGCAGGTTACCCATTATTTCAGTTC 59.348 40.000 0.00 0.00 0.00 3.01
2771 3283 5.163713 GGATCAAAATTGTACCAGAGCTGAC 60.164 44.000 0.00 0.00 0.00 3.51
2955 3468 9.990360 TTTGTGAAGTAGAAGTGAACATGTATA 57.010 29.630 0.00 0.00 0.00 1.47
3075 3595 4.524802 TTGGAGATAAGCCCATGATTGT 57.475 40.909 0.00 0.00 31.66 2.71
3205 3735 8.356657 TGACATTAACACAGAAAGGGTAAATTG 58.643 33.333 0.00 0.00 29.80 2.32
3492 4111 4.079253 TGGATTTGCCCTTTGTCTTACTC 58.921 43.478 0.00 0.00 34.97 2.59
3596 4215 8.847196 TCTTGCTAATGATACTCTTACGTATGT 58.153 33.333 8.18 5.27 30.57 2.29
3747 4491 1.659622 TTGCCAGCATCATTCCTGCG 61.660 55.000 0.00 0.00 44.38 5.18
3756 4500 3.120060 GCATCATTCCTGCGATATTCACC 60.120 47.826 0.00 0.00 0.00 4.02
3843 4976 8.590204 TGCCATGATTTCGTATTATCCTAGTAA 58.410 33.333 0.00 0.00 0.00 2.24
3937 5070 2.082231 CCTGATGCACTGTTGAAGGAG 58.918 52.381 0.00 0.00 0.00 3.69
4300 5586 0.321564 TGAAACCCGAGGATGCTGTG 60.322 55.000 0.00 0.00 0.00 3.66
4544 5956 4.865905 ACCATGATACTTGGCATAAACCA 58.134 39.130 0.00 0.00 37.81 3.67
4557 5969 6.658849 TGGCATAAACCAACACTGATAGTAT 58.341 36.000 0.00 0.00 36.55 2.12
4571 5983 8.572185 ACACTGATAGTATGTGTGATAAGCTAG 58.428 37.037 15.14 0.00 42.43 3.42
4593 6005 4.801891 GCACATGAATGCTCTCTTTGAAA 58.198 39.130 0.00 0.00 42.62 2.69
4612 6024 6.751514 TGAAACCGTGCTTCATATTTGTAT 57.248 33.333 0.00 0.00 0.00 2.29
4840 6257 7.315066 TCATGTCCTCCTTGTATGCAATATA 57.685 36.000 0.00 0.00 33.65 0.86
4841 6258 7.161404 TCATGTCCTCCTTGTATGCAATATAC 58.839 38.462 0.00 0.00 33.65 1.47
4842 6259 6.747414 TGTCCTCCTTGTATGCAATATACT 57.253 37.500 0.00 0.00 33.65 2.12
4843 6260 6.759272 TGTCCTCCTTGTATGCAATATACTC 58.241 40.000 0.00 0.00 33.65 2.59
4844 6261 6.166982 GTCCTCCTTGTATGCAATATACTCC 58.833 44.000 0.00 0.00 33.65 3.85
4845 6262 5.248477 TCCTCCTTGTATGCAATATACTCCC 59.752 44.000 0.00 0.00 33.65 4.30
4846 6263 5.249393 CCTCCTTGTATGCAATATACTCCCT 59.751 44.000 0.00 0.00 33.65 4.20
4847 6264 6.360370 TCCTTGTATGCAATATACTCCCTC 57.640 41.667 0.00 0.00 33.65 4.30
4848 6265 5.248477 TCCTTGTATGCAATATACTCCCTCC 59.752 44.000 0.00 0.00 33.65 4.30
4849 6266 4.801330 TGTATGCAATATACTCCCTCCG 57.199 45.455 0.00 0.00 0.00 4.63
4850 6267 4.157246 TGTATGCAATATACTCCCTCCGT 58.843 43.478 0.00 0.00 0.00 4.69
4851 6268 3.963428 ATGCAATATACTCCCTCCGTC 57.037 47.619 0.00 0.00 0.00 4.79
4852 6269 1.968493 TGCAATATACTCCCTCCGTCC 59.032 52.381 0.00 0.00 0.00 4.79
4853 6270 1.275573 GCAATATACTCCCTCCGTCCC 59.724 57.143 0.00 0.00 0.00 4.46
4854 6271 2.605257 CAATATACTCCCTCCGTCCCA 58.395 52.381 0.00 0.00 0.00 4.37
4855 6272 3.173965 CAATATACTCCCTCCGTCCCAT 58.826 50.000 0.00 0.00 0.00 4.00
4856 6273 4.350245 CAATATACTCCCTCCGTCCCATA 58.650 47.826 0.00 0.00 0.00 2.74
4857 6274 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
4858 6275 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4859 6276 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4860 6277 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4861 6278 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4862 6279 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4863 6280 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4864 6281 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4865 6282 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4866 6283 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4867 6284 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4868 6285 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4869 6286 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4870 6287 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4871 6288 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4872 6289 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4899 6316 6.071463 CACTAATGTAGTGTCAAAAACGCTC 58.929 40.000 7.17 0.00 45.69 5.03
4900 6317 5.989777 ACTAATGTAGTGTCAAAAACGCTCT 59.010 36.000 0.00 0.00 45.69 4.09
4901 6318 5.751243 AATGTAGTGTCAAAAACGCTCTT 57.249 34.783 0.00 0.00 45.69 2.85
4902 6319 6.854496 AATGTAGTGTCAAAAACGCTCTTA 57.146 33.333 0.00 0.00 45.69 2.10
4903 6320 7.435068 AATGTAGTGTCAAAAACGCTCTTAT 57.565 32.000 0.00 0.00 45.69 1.73
4904 6321 8.542497 AATGTAGTGTCAAAAACGCTCTTATA 57.458 30.769 0.00 0.00 45.69 0.98
4905 6322 8.718102 ATGTAGTGTCAAAAACGCTCTTATAT 57.282 30.769 0.00 0.00 45.69 0.86
4906 6323 8.542497 TGTAGTGTCAAAAACGCTCTTATATT 57.458 30.769 0.00 0.00 45.69 1.28
4907 6324 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
4910 6327 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4911 6328 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4912 6329 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4913 6330 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4914 6331 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4915 6332 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4916 6333 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4917 6334 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4918 6335 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4919 6336 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4920 6337 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4921 6338 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4922 6339 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4926 6343 1.122019 ATGGGACGGAGGGAGTATGC 61.122 60.000 0.00 0.00 0.00 3.14
4941 6358 8.386012 AGGGAGTATGCATTAAGAAGCTATAT 57.614 34.615 3.54 0.00 0.00 0.86
5165 6592 1.567208 TTCGATTGGGCTGGGGCTTA 61.567 55.000 0.00 0.00 38.73 3.09
5192 6619 1.493022 AGCACCTGTGGTTTGGTTCTA 59.507 47.619 0.00 0.00 38.24 2.10
5282 6709 5.982516 GTGAGAATGTCTAAGATGCACCTAG 59.017 44.000 0.00 0.00 0.00 3.02
5302 6730 2.979678 AGGGTTCTGAGAGCCTGTTTAA 59.020 45.455 15.10 0.00 45.39 1.52
5428 7056 7.548427 ACAATCATCACTAGTTTCTCAGACATG 59.452 37.037 0.00 0.00 0.00 3.21
5429 7057 6.596309 TCATCACTAGTTTCTCAGACATGT 57.404 37.500 0.00 0.00 0.00 3.21
5430 7058 6.393171 TCATCACTAGTTTCTCAGACATGTG 58.607 40.000 1.15 0.00 0.00 3.21
5435 7064 1.808945 GTTTCTCAGACATGTGGCCAG 59.191 52.381 5.11 0.00 0.00 4.85
5440 7069 1.208776 TCAGACATGTGGCCAGATGAG 59.791 52.381 40.79 29.45 35.83 2.90
5545 7189 3.874383 TGTGAATTGAGAAAGGGTGGA 57.126 42.857 0.00 0.00 0.00 4.02
5562 7206 0.741915 GGACACCAAAGCCGTGAAAA 59.258 50.000 0.00 0.00 35.17 2.29
5566 7210 1.134175 CACCAAAGCCGTGAAAACACT 59.866 47.619 0.00 0.00 32.77 3.55
5583 7227 4.577677 TGCCCGACCAGCTTTGCA 62.578 61.111 0.00 0.00 0.00 4.08
5589 7233 3.149196 CCCGACCAGCTTTGCATAATAT 58.851 45.455 0.00 0.00 0.00 1.28
5590 7234 3.189287 CCCGACCAGCTTTGCATAATATC 59.811 47.826 0.00 0.00 0.00 1.63
5630 7275 3.221771 TGGTGCTGCTAACATTGAACTT 58.778 40.909 0.00 0.00 0.00 2.66
5636 7281 5.534654 TGCTGCTAACATTGAACTTTTACCT 59.465 36.000 0.00 0.00 0.00 3.08
5938 7684 4.021016 TGCTAGGGAAGAAGAAGAACTGAC 60.021 45.833 0.00 0.00 0.00 3.51
6062 7810 6.040504 TCTGTCAGTACTTTGCAGACTCTTAA 59.959 38.462 13.63 0.00 31.21 1.85
6355 8105 1.032014 GCTGCTAGAGAGGAGTCAGG 58.968 60.000 0.00 0.00 42.90 3.86
6415 8165 3.132111 TCAGCGCTGATTGACAAGGTATA 59.868 43.478 35.30 8.87 34.14 1.47
6453 8203 6.373779 CATGAAAAGTCAAAGCTCGTAACAT 58.626 36.000 0.00 0.00 37.30 2.71
6529 8285 1.420430 TTTCCCTGACTTCTGTCGGT 58.580 50.000 4.60 0.00 45.59 4.69
6581 8337 5.099575 CGGTTAAATTACTTGGGCACAATC 58.900 41.667 0.00 0.00 35.73 2.67
6741 8701 2.665052 CGGGTTTCTACTTTGTAGCGAC 59.335 50.000 0.00 0.00 0.00 5.19
6742 8702 2.998670 GGGTTTCTACTTTGTAGCGACC 59.001 50.000 14.90 14.90 0.00 4.79
6767 8729 8.217111 CCATATGGGTTAATTGGCCTTTTATTT 58.783 33.333 14.52 0.00 0.00 1.40
6782 8755 5.221441 CCTTTTATTTGGCCTTATACCCAGC 60.221 44.000 3.32 0.00 31.73 4.85
6797 8770 0.037734 CCAGCTTTTCCGGTAACCCT 59.962 55.000 0.00 0.00 0.00 4.34
6802 8775 2.878526 GCTTTTCCGGTAACCCTGTGAT 60.879 50.000 0.00 0.00 0.00 3.06
7038 10919 4.627035 GCTTGATTGCATTTCCACCTTTAC 59.373 41.667 0.00 0.00 0.00 2.01
7052 10933 4.376615 CCACCTTTACGTTACGTGTTCATG 60.377 45.833 21.22 12.47 41.39 3.07
7197 11085 4.806936 CAAGCTCCTCCTTGTGCA 57.193 55.556 0.00 0.00 37.89 4.57
7201 11104 1.352083 AGCTCCTCCTTGTGCACTTA 58.648 50.000 19.41 5.21 0.00 2.24
7203 11106 3.107601 AGCTCCTCCTTGTGCACTTATA 58.892 45.455 19.41 0.00 0.00 0.98
7217 11120 9.462174 TTGTGCACTTATAACAATTCTTTCTTG 57.538 29.630 19.41 0.00 0.00 3.02
7356 11262 5.981088 ATGACTGATCTCTATGCCTACAG 57.019 43.478 0.00 0.00 0.00 2.74
7363 11269 0.744874 TCTATGCCTACAGTCGCCAC 59.255 55.000 0.00 0.00 0.00 5.01
7368 11274 4.143333 CTACAGTCGCCACCCCCG 62.143 72.222 0.00 0.00 0.00 5.73
7371 11277 4.760047 CAGTCGCCACCCCCGAAG 62.760 72.222 0.00 0.00 36.36 3.79
7373 11279 4.754667 GTCGCCACCCCCGAAGTC 62.755 72.222 0.00 0.00 36.36 3.01
7501 11450 3.065925 GGTTGATGCTATGCTTCAGGAAC 59.934 47.826 7.88 4.87 42.14 3.62
7593 11545 5.627499 ATTGCATGTGTATCAGTCGTTTT 57.373 34.783 0.00 0.00 0.00 2.43
7651 11603 5.804771 GCTGGTGAATTTCCTCTAGGAGTTT 60.805 44.000 0.00 0.00 46.36 2.66
7708 11663 2.571653 AGACCCAATCCGATCAAACTGA 59.428 45.455 0.00 0.00 0.00 3.41
7731 11686 6.261381 TGAAAGCGATTGTTTTGGTAGTACTT 59.739 34.615 0.00 0.00 0.00 2.24
7742 11697 8.048514 TGTTTTGGTAGTACTTAGTTTCCTGTT 58.951 33.333 0.00 0.00 0.00 3.16
7745 11700 6.752168 TGGTAGTACTTAGTTTCCTGTTGAC 58.248 40.000 0.00 0.00 0.00 3.18
7753 11708 2.372172 AGTTTCCTGTTGACCTGTAGGG 59.628 50.000 2.53 0.00 40.27 3.53
7773 11728 3.258372 GGGATTGAGCCGTATCAGTGATA 59.742 47.826 8.84 8.84 0.00 2.15
7775 11730 4.926238 GGATTGAGCCGTATCAGTGATAAG 59.074 45.833 14.44 15.60 0.00 1.73
7882 11839 7.334858 TGGTGCAGATATGTTGACACTTTATA 58.665 34.615 0.00 0.00 0.00 0.98
7884 11841 7.710907 GGTGCAGATATGTTGACACTTTATAGA 59.289 37.037 0.00 0.00 0.00 1.98
7885 11842 9.098355 GTGCAGATATGTTGACACTTTATAGAA 57.902 33.333 0.00 0.00 0.00 2.10
7886 11843 9.665719 TGCAGATATGTTGACACTTTATAGAAA 57.334 29.630 0.00 0.00 0.00 2.52
7983 11977 6.738635 TCTACTTCTCTCAGTAATTACCCCA 58.261 40.000 12.05 0.00 0.00 4.96
8009 12003 4.038763 ACCGTGACTGATAACAGAGACAAA 59.961 41.667 7.05 0.00 46.03 2.83
8016 12010 9.645059 TGACTGATAACAGAGACAAATAGAAAG 57.355 33.333 7.05 0.00 46.03 2.62
8019 12013 9.809096 CTGATAACAGAGACAAATAGAAAGCTA 57.191 33.333 0.00 0.00 46.03 3.32
8043 12037 1.660560 TACTCCCCGCTGACGCTAAC 61.661 60.000 0.00 0.00 38.22 2.34
8051 12045 1.014564 GCTGACGCTAACAGGTGGTC 61.015 60.000 0.00 0.00 36.09 4.02
8052 12046 0.317160 CTGACGCTAACAGGTGGTCA 59.683 55.000 0.00 0.00 0.00 4.02
8061 12055 2.069776 CAGGTGGTCATCCCTGTGT 58.930 57.895 0.00 0.00 42.72 3.72
8066 12086 1.899814 GTGGTCATCCCTGTGTGTCTA 59.100 52.381 0.00 0.00 0.00 2.59
8117 12138 1.452833 GGGGGATGAACTGCTGCTC 60.453 63.158 0.00 0.00 0.00 4.26
8119 12140 0.747283 GGGGATGAACTGCTGCTCTG 60.747 60.000 0.00 0.00 0.00 3.35
8132 12153 2.030213 GCTGCTCTGTCGATCATGTTTC 59.970 50.000 0.00 0.00 0.00 2.78
8153 12174 7.340743 TGTTTCTCTTTGTTGTTTAATCCTCCA 59.659 33.333 0.00 0.00 0.00 3.86
8208 12229 4.926832 TGTGTAACGACCATGTGAAGTATG 59.073 41.667 0.00 0.00 42.39 2.39
8246 12368 8.426489 AGTCTGTGTGGTAAGTCAAAGTTATAA 58.574 33.333 0.00 0.00 0.00 0.98
8262 12384 9.722056 CAAAGTTATAACATTGGTGAGCTAATC 57.278 33.333 20.68 0.00 34.85 1.75
8342 12464 8.206325 TCTACAGTTTAGTTACTCGGATACTG 57.794 38.462 0.00 0.00 38.12 2.74
8355 12478 1.541233 GGATACTGCATGAGTTCCCCG 60.541 57.143 0.00 0.00 35.96 5.73
8362 12485 0.251916 CATGAGTTCCCCGGTGCTTA 59.748 55.000 0.00 0.00 0.00 3.09
8437 12560 5.600898 TCCTTCCGATCCATATTAGTTGTCA 59.399 40.000 0.00 0.00 0.00 3.58
8462 12585 6.541641 ACTCGTCTAGATACATCCGTTTTACT 59.458 38.462 0.00 0.00 0.00 2.24
8539 12662 3.996150 ACTTGGAGCATGTTTTGTCAG 57.004 42.857 0.00 0.00 0.00 3.51
8543 12666 3.419943 TGGAGCATGTTTTGTCAGCATA 58.580 40.909 0.00 0.00 0.00 3.14
8721 12844 4.216902 TGTGACATTCTTTTCTGCTCATGG 59.783 41.667 0.00 0.00 0.00 3.66
8756 12879 3.020984 GTTTTCCCCACTGTTTCTGACA 58.979 45.455 0.00 0.00 36.65 3.58
8768 12891 6.808212 CACTGTTTCTGACAATTTCTTGTGTT 59.192 34.615 0.00 0.00 45.57 3.32
8810 12933 1.363744 GAAGACATCGTGAAGCTGGG 58.636 55.000 0.00 0.00 0.00 4.45
8945 13068 6.316890 GGAACTTCGAGTATCTCAGTTACTCT 59.683 42.308 17.29 2.43 42.15 3.24
9081 13206 5.172687 TGACTTGCATATAGTTGGGTTCA 57.827 39.130 0.00 0.00 0.00 3.18
9086 13211 3.142174 GCATATAGTTGGGTTCAGCCTC 58.858 50.000 0.00 0.00 37.43 4.70
9088 13213 2.789409 ATAGTTGGGTTCAGCCTCAC 57.211 50.000 0.00 0.00 37.43 3.51
9094 13219 1.617947 GGGTTCAGCCTCACGGATCT 61.618 60.000 0.00 0.00 37.43 2.75
9105 13230 1.621317 TCACGGATCTGCAGGTAAACA 59.379 47.619 15.13 0.00 0.00 2.83
9278 13403 6.800543 TGAGTGCTATTTGTTGCTTTTACAA 58.199 32.000 0.00 0.00 33.92 2.41
9304 13429 5.353123 CAGTGTGTTATTGGTAGCCGTTATT 59.647 40.000 0.00 0.00 0.00 1.40
9309 13434 8.640651 TGTGTTATTGGTAGCCGTTATTATCTA 58.359 33.333 0.00 0.00 0.00 1.98
9341 13466 4.464947 AGTGCCTTTATTATCTTGCCTCC 58.535 43.478 0.00 0.00 0.00 4.30
9367 13492 4.020218 TCCTAGTCAGTTCCCATTGTCTTG 60.020 45.833 0.00 0.00 0.00 3.02
9373 13498 5.763204 GTCAGTTCCCATTGTCTTGAACTTA 59.237 40.000 0.00 0.00 43.54 2.24
9380 13505 6.208599 TCCCATTGTCTTGAACTTAATTGTCC 59.791 38.462 0.00 0.00 0.00 4.02
9381 13506 6.015519 CCCATTGTCTTGAACTTAATTGTCCA 60.016 38.462 0.00 0.00 0.00 4.02
9400 13525 4.081642 GTCCACATTTCTACTCACCTGCTA 60.082 45.833 0.00 0.00 0.00 3.49
9414 13539 0.681564 CTGCTACTCCGACCTCCACT 60.682 60.000 0.00 0.00 0.00 4.00
9417 13542 1.668101 CTACTCCGACCTCCACTGCC 61.668 65.000 0.00 0.00 0.00 4.85
9474 13599 1.695893 CGCAGGTGCTACCGTGATTG 61.696 60.000 0.00 0.00 44.90 2.67
9493 13618 3.075005 TACTGCTCGGTGCCCTCC 61.075 66.667 0.00 0.00 42.00 4.30
9503 13628 1.078143 GTGCCCTCCCTTGCTACTG 60.078 63.158 0.00 0.00 0.00 2.74
9504 13629 2.124529 GCCCTCCCTTGCTACTGC 60.125 66.667 0.00 0.00 40.20 4.40
9522 13647 2.060275 TGCTCTGATGGGGCAGATATT 58.940 47.619 0.00 0.00 43.43 1.28
9530 13655 4.019051 TGATGGGGCAGATATTAGGTGATG 60.019 45.833 0.00 0.00 0.00 3.07
9535 13660 3.743521 GCAGATATTAGGTGATGCCACA 58.256 45.455 0.00 0.00 44.93 4.17
9539 13664 6.524734 CAGATATTAGGTGATGCCACACTTA 58.475 40.000 9.56 4.69 44.93 2.24
9550 13675 2.162681 GCCACACTTAACATGCTTCCT 58.837 47.619 0.00 0.00 0.00 3.36
9559 13684 6.587608 CACTTAACATGCTTCCTTCCAAATTC 59.412 38.462 0.00 0.00 0.00 2.17
9562 13687 4.410099 ACATGCTTCCTTCCAAATTCTGA 58.590 39.130 0.00 0.00 0.00 3.27
9563 13688 4.834496 ACATGCTTCCTTCCAAATTCTGAA 59.166 37.500 0.00 0.00 0.00 3.02
9652 13777 9.440784 GTCTATAACATCTAGAAGTTTCAGACG 57.559 37.037 23.85 10.03 32.63 4.18
9743 13868 6.884187 CAAAGCATCTGGATTTGTCTTTTTG 58.116 36.000 0.00 0.00 45.45 2.44
9744 13869 5.143376 AGCATCTGGATTTGTCTTTTTGG 57.857 39.130 0.00 0.00 0.00 3.28
9745 13870 4.590222 AGCATCTGGATTTGTCTTTTTGGT 59.410 37.500 0.00 0.00 0.00 3.67
9746 13871 5.070847 AGCATCTGGATTTGTCTTTTTGGTT 59.929 36.000 0.00 0.00 0.00 3.67
9747 13872 5.759763 GCATCTGGATTTGTCTTTTTGGTTT 59.240 36.000 0.00 0.00 0.00 3.27
9748 13873 6.260714 GCATCTGGATTTGTCTTTTTGGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
9749 13874 7.632721 CATCTGGATTTGTCTTTTTGGTTTTG 58.367 34.615 0.00 0.00 0.00 2.44
9750 13875 6.706295 TCTGGATTTGTCTTTTTGGTTTTGT 58.294 32.000 0.00 0.00 0.00 2.83
9751 13876 6.816140 TCTGGATTTGTCTTTTTGGTTTTGTC 59.184 34.615 0.00 0.00 0.00 3.18
9752 13877 6.467677 TGGATTTGTCTTTTTGGTTTTGTCA 58.532 32.000 0.00 0.00 0.00 3.58
9753 13878 6.936900 TGGATTTGTCTTTTTGGTTTTGTCAA 59.063 30.769 0.00 0.00 0.00 3.18
9754 13879 7.609532 TGGATTTGTCTTTTTGGTTTTGTCAAT 59.390 29.630 0.00 0.00 0.00 2.57
9755 13880 7.909641 GGATTTGTCTTTTTGGTTTTGTCAATG 59.090 33.333 0.00 0.00 0.00 2.82
9756 13881 7.736447 TTTGTCTTTTTGGTTTTGTCAATGT 57.264 28.000 0.00 0.00 0.00 2.71
9757 13882 7.736447 TTGTCTTTTTGGTTTTGTCAATGTT 57.264 28.000 0.00 0.00 0.00 2.71
9758 13883 7.736447 TGTCTTTTTGGTTTTGTCAATGTTT 57.264 28.000 0.00 0.00 0.00 2.83
9759 13884 7.579726 TGTCTTTTTGGTTTTGTCAATGTTTG 58.420 30.769 0.00 0.00 0.00 2.93
9760 13885 7.227512 TGTCTTTTTGGTTTTGTCAATGTTTGT 59.772 29.630 0.00 0.00 0.00 2.83
9761 13886 8.073167 GTCTTTTTGGTTTTGTCAATGTTTGTT 58.927 29.630 0.00 0.00 0.00 2.83
9762 13887 8.624776 TCTTTTTGGTTTTGTCAATGTTTGTTT 58.375 25.926 0.00 0.00 0.00 2.83
9763 13888 9.242477 CTTTTTGGTTTTGTCAATGTTTGTTTT 57.758 25.926 0.00 0.00 0.00 2.43
9764 13889 8.566008 TTTTGGTTTTGTCAATGTTTGTTTTG 57.434 26.923 0.00 0.00 0.00 2.44
9765 13890 7.496529 TTGGTTTTGTCAATGTTTGTTTTGA 57.503 28.000 0.00 0.00 0.00 2.69
9766 13891 7.496529 TGGTTTTGTCAATGTTTGTTTTGAA 57.503 28.000 0.00 0.00 33.90 2.69
9767 13892 8.103948 TGGTTTTGTCAATGTTTGTTTTGAAT 57.896 26.923 0.00 0.00 33.90 2.57
9768 13893 8.571336 TGGTTTTGTCAATGTTTGTTTTGAATT 58.429 25.926 0.00 0.00 33.90 2.17
9769 13894 9.404348 GGTTTTGTCAATGTTTGTTTTGAATTT 57.596 25.926 0.00 0.00 33.90 1.82
9774 13899 9.746711 TGTCAATGTTTGTTTTGAATTTTTACG 57.253 25.926 0.00 0.00 33.90 3.18
9775 13900 9.204792 GTCAATGTTTGTTTTGAATTTTTACGG 57.795 29.630 0.00 0.00 33.90 4.02
9776 13901 8.936864 TCAATGTTTGTTTTGAATTTTTACGGT 58.063 25.926 0.00 0.00 0.00 4.83
9777 13902 9.548208 CAATGTTTGTTTTGAATTTTTACGGTT 57.452 25.926 0.00 0.00 0.00 4.44
9779 13904 8.934973 TGTTTGTTTTGAATTTTTACGGTTTG 57.065 26.923 0.00 0.00 0.00 2.93
9780 13905 8.557029 TGTTTGTTTTGAATTTTTACGGTTTGT 58.443 25.926 0.00 0.00 0.00 2.83
9783 13908 8.408743 TGTTTTGAATTTTTACGGTTTGTAGG 57.591 30.769 0.00 0.00 33.75 3.18
9784 13909 7.010275 TGTTTTGAATTTTTACGGTTTGTAGGC 59.990 33.333 0.00 0.00 33.75 3.93
9785 13910 5.769484 TGAATTTTTACGGTTTGTAGGCA 57.231 34.783 0.00 0.00 33.75 4.75
9786 13911 5.521544 TGAATTTTTACGGTTTGTAGGCAC 58.478 37.500 0.00 0.00 33.75 5.01
9787 13912 5.067413 TGAATTTTTACGGTTTGTAGGCACA 59.933 36.000 0.00 0.00 33.75 4.57
9788 13913 5.715434 ATTTTTACGGTTTGTAGGCACAT 57.285 34.783 0.00 0.00 33.76 3.21
9789 13914 4.491234 TTTTACGGTTTGTAGGCACATG 57.509 40.909 0.00 0.00 33.76 3.21
9790 13915 2.843401 TACGGTTTGTAGGCACATGT 57.157 45.000 0.00 0.00 33.76 3.21
9791 13916 1.519408 ACGGTTTGTAGGCACATGTC 58.481 50.000 0.00 0.00 33.76 3.06
9792 13917 0.802494 CGGTTTGTAGGCACATGTCC 59.198 55.000 0.00 0.28 33.76 4.02
9793 13918 1.610624 CGGTTTGTAGGCACATGTCCT 60.611 52.381 17.41 17.41 33.76 3.85
9794 13919 2.084546 GGTTTGTAGGCACATGTCCTC 58.915 52.381 16.95 11.12 33.76 3.71
9795 13920 2.290323 GGTTTGTAGGCACATGTCCTCT 60.290 50.000 16.95 8.29 33.76 3.69
9796 13921 2.744202 GTTTGTAGGCACATGTCCTCTG 59.256 50.000 16.95 0.00 33.76 3.35
9797 13922 1.937191 TGTAGGCACATGTCCTCTGA 58.063 50.000 16.95 1.92 35.21 3.27
9798 13923 2.256306 TGTAGGCACATGTCCTCTGAA 58.744 47.619 16.95 1.63 35.21 3.02
9799 13924 2.840038 TGTAGGCACATGTCCTCTGAAT 59.160 45.455 16.95 0.31 35.21 2.57
9800 13925 4.030216 TGTAGGCACATGTCCTCTGAATA 58.970 43.478 16.95 0.75 35.21 1.75
9801 13926 4.655649 TGTAGGCACATGTCCTCTGAATAT 59.344 41.667 16.95 0.00 35.21 1.28
9802 13927 4.785346 AGGCACATGTCCTCTGAATATT 57.215 40.909 10.11 0.00 0.00 1.28
9803 13928 4.712476 AGGCACATGTCCTCTGAATATTC 58.288 43.478 8.60 8.60 0.00 1.75
9804 13929 4.164796 AGGCACATGTCCTCTGAATATTCA 59.835 41.667 17.07 17.07 35.57 2.57
9862 13987 9.617523 AAATGTGACTTTTCAGAAAATTGGATT 57.382 25.926 8.81 2.54 30.10 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.307480 CGAATGGGTAGTTCTGTCCCTTT 60.307 47.826 12.95 12.46 41.58 3.11
61 62 2.094182 TCTCTCCGAACTATTGCACCAC 60.094 50.000 0.00 0.00 0.00 4.16
155 156 5.972107 ATCAATTGAGGAAAAGGTGACAG 57.028 39.130 14.54 0.00 0.00 3.51
180 181 1.817357 TGAAGATTGTCCTGCAGCAG 58.183 50.000 16.23 16.23 0.00 4.24
247 250 3.556843 GCAATGCCAAAACCTATGGTTGT 60.557 43.478 2.49 0.00 46.20 3.32
330 380 4.967575 CGTTGCTGTTTGTGTTAGGTTTAG 59.032 41.667 0.00 0.00 0.00 1.85
390 440 7.165485 TCAACAGTATAATAGCAACAACAGGT 58.835 34.615 0.00 0.00 0.00 4.00
391 441 7.609760 TCAACAGTATAATAGCAACAACAGG 57.390 36.000 0.00 0.00 0.00 4.00
392 442 7.182761 GCTCAACAGTATAATAGCAACAACAG 58.817 38.462 0.00 0.00 0.00 3.16
393 443 6.093495 GGCTCAACAGTATAATAGCAACAACA 59.907 38.462 0.00 0.00 0.00 3.33
394 444 6.316390 AGGCTCAACAGTATAATAGCAACAAC 59.684 38.462 0.00 0.00 0.00 3.32
395 445 6.316140 CAGGCTCAACAGTATAATAGCAACAA 59.684 38.462 0.00 0.00 0.00 2.83
544 594 4.156739 GTCCAAGCAAGCTTAGCATTAGTT 59.843 41.667 18.74 5.49 34.50 2.24
565 615 5.486526 AGAATCAACTCTGATCCAAGTGTC 58.513 41.667 0.00 0.00 41.66 3.67
686 736 5.650703 TGTTCGAGATATTCCAGTACAGTGA 59.349 40.000 0.00 0.00 0.00 3.41
799 850 3.892284 AGTGGATTACAACACACAACCA 58.108 40.909 0.00 0.00 39.99 3.67
894 946 3.570926 AGCAGAAATGCACATTGACAG 57.429 42.857 2.73 0.00 37.25 3.51
1923 2395 0.941542 ACGGGACAACAATGAACACG 59.058 50.000 0.00 0.00 38.45 4.49
2116 2591 6.183360 TGTCGTAGGTTCTGACATACATACAG 60.183 42.308 11.03 0.00 41.77 2.74
2146 2621 3.217626 CAAGAGAACAGGGCAAAGAACT 58.782 45.455 0.00 0.00 0.00 3.01
2173 2648 3.555527 ATGATACTGCACTGCACATCT 57.444 42.857 16.50 5.42 33.79 2.90
2325 2836 7.414222 AATGGCTAACAATCATGAGACAATT 57.586 32.000 0.09 0.00 0.00 2.32
2335 2846 5.170021 GCACATGAAAATGGCTAACAATCA 58.830 37.500 0.00 0.00 0.00 2.57
2338 2849 4.558178 CTGCACATGAAAATGGCTAACAA 58.442 39.130 0.00 0.00 0.00 2.83
2342 2853 3.084536 TCCTGCACATGAAAATGGCTA 57.915 42.857 0.00 0.00 0.00 3.93
2343 2854 1.927487 TCCTGCACATGAAAATGGCT 58.073 45.000 0.00 0.00 0.00 4.75
2344 2855 2.613691 CTTCCTGCACATGAAAATGGC 58.386 47.619 0.00 0.00 0.00 4.40
2771 3283 1.614903 TGCTCTGCAGGAAAACATTGG 59.385 47.619 15.13 0.00 33.32 3.16
2909 3421 7.119699 TCACAAATTGCAGAGTGTATCCTTTAG 59.880 37.037 0.00 0.00 33.84 1.85
2967 3480 9.944663 CAAGCTAACTAACACTTCAATTACAAA 57.055 29.630 0.00 0.00 0.00 2.83
3075 3595 5.939764 AATGATAGCAGAACCTAGTGTCA 57.060 39.130 0.00 0.00 0.00 3.58
3187 3717 8.956426 CATATACACAATTTACCCTTTCTGTGT 58.044 33.333 10.18 10.18 46.58 3.72
3257 3787 9.210426 CTTCGTGTATGAATTAACATAAAGTGC 57.790 33.333 0.00 0.00 35.05 4.40
3270 3800 7.672983 ATGTGTTTTCTCTTCGTGTATGAAT 57.327 32.000 0.00 0.00 0.00 2.57
3385 4003 6.128553 CGTTATGTACAGTTTGAGTCAAGCAT 60.129 38.462 20.15 11.09 0.00 3.79
3450 4069 8.970859 AATCCAGTAAATGAAGAGTTATCAGG 57.029 34.615 0.00 0.00 0.00 3.86
3492 4111 9.801714 GATTGCACTGAAATAAATGTCAAAAAG 57.198 29.630 0.00 0.00 0.00 2.27
3511 4130 6.563422 TCTAAACATAAATGCCAGATTGCAC 58.437 36.000 0.00 0.00 45.48 4.57
3747 4491 9.566432 AGGTATTCTTCTGAAATGGTGAATATC 57.434 33.333 10.38 10.05 35.63 1.63
3756 4500 9.533253 AAAACAAACAGGTATTCTTCTGAAATG 57.467 29.630 0.00 0.00 35.63 2.32
3875 5008 8.093659 AGAGCAAGAAAAACTGAGAACTAATC 57.906 34.615 0.00 0.00 0.00 1.75
3937 5070 2.416431 GCTGAGGCAATGGATGTTGTTC 60.416 50.000 0.00 0.00 38.54 3.18
4300 5586 4.229876 GCAAAGAAGACAATGTTGCTACC 58.770 43.478 0.00 0.00 41.04 3.18
4493 5898 6.606234 TGACAAACGATGTAAAGCAGTAAA 57.394 33.333 0.00 0.00 44.12 2.01
4499 5904 4.225984 TGCATTGACAAACGATGTAAAGC 58.774 39.130 0.00 0.84 44.12 3.51
4544 5956 7.786030 AGCTTATCACACATACTATCAGTGTT 58.214 34.615 0.00 0.00 43.40 3.32
4557 5969 4.470334 TCATGTGCTAGCTTATCACACA 57.530 40.909 17.23 10.22 42.59 3.72
4571 5983 4.430137 TTCAAAGAGAGCATTCATGTGC 57.570 40.909 0.10 0.10 45.38 4.57
4593 6005 8.736244 ACTAAAAATACAAATATGAAGCACGGT 58.264 29.630 0.00 0.00 0.00 4.83
4612 6024 3.393278 AGTACTGCCCACTCCACTAAAAA 59.607 43.478 0.00 0.00 0.00 1.94
4769 6183 0.405198 TGAGAAGAAGGGCATGGCAA 59.595 50.000 22.06 0.00 0.00 4.52
4772 6186 5.135383 TCAATTATGAGAAGAAGGGCATGG 58.865 41.667 0.00 0.00 0.00 3.66
4840 6257 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4841 6258 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4842 6259 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4843 6260 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4844 6261 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4845 6262 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4846 6263 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4847 6264 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4848 6265 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4876 6293 5.989777 AGAGCGTTTTTGACACTACATTAGT 59.010 36.000 0.00 0.00 40.28 2.24
4877 6294 6.467723 AGAGCGTTTTTGACACTACATTAG 57.532 37.500 0.00 0.00 0.00 1.73
4878 6295 6.854496 AAGAGCGTTTTTGACACTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
4879 6296 5.751243 AAGAGCGTTTTTGACACTACATT 57.249 34.783 0.00 0.00 0.00 2.71
4880 6297 8.718102 ATATAAGAGCGTTTTTGACACTACAT 57.282 30.769 0.00 0.00 0.00 2.29
4881 6298 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4884 6301 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4885 6302 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4886 6303 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4887 6304 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4888 6305 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4889 6306 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4890 6307 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4891 6308 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4892 6309 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4893 6310 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4894 6311 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4895 6312 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4896 6313 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4897 6314 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4898 6315 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4899 6316 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4900 6317 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4901 6318 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4902 6319 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4903 6320 4.350245 CATACTCCCTCCGTCCCATAATA 58.650 47.826 0.00 0.00 0.00 0.98
4904 6321 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
4905 6322 2.605257 CATACTCCCTCCGTCCCATAA 58.395 52.381 0.00 0.00 0.00 1.90
4906 6323 1.826042 GCATACTCCCTCCGTCCCATA 60.826 57.143 0.00 0.00 0.00 2.74
4907 6324 1.122019 GCATACTCCCTCCGTCCCAT 61.122 60.000 0.00 0.00 0.00 4.00
4908 6325 1.760875 GCATACTCCCTCCGTCCCA 60.761 63.158 0.00 0.00 0.00 4.37
4909 6326 1.122019 ATGCATACTCCCTCCGTCCC 61.122 60.000 0.00 0.00 0.00 4.46
4910 6327 0.759346 AATGCATACTCCCTCCGTCC 59.241 55.000 0.00 0.00 0.00 4.79
4911 6328 3.321111 TCTTAATGCATACTCCCTCCGTC 59.679 47.826 0.00 0.00 0.00 4.79
4912 6329 3.305720 TCTTAATGCATACTCCCTCCGT 58.694 45.455 0.00 0.00 0.00 4.69
4913 6330 4.310769 CTTCTTAATGCATACTCCCTCCG 58.689 47.826 0.00 0.00 0.00 4.63
4914 6331 4.068599 GCTTCTTAATGCATACTCCCTCC 58.931 47.826 0.00 0.00 0.00 4.30
4915 6332 4.967036 AGCTTCTTAATGCATACTCCCTC 58.033 43.478 0.00 0.00 0.00 4.30
4916 6333 6.694445 ATAGCTTCTTAATGCATACTCCCT 57.306 37.500 0.00 0.00 0.00 4.20
4926 6343 9.831737 GCACAAACCATATATAGCTTCTTAATG 57.168 33.333 0.00 0.00 0.00 1.90
4941 6358 4.865905 ACCATGGAATAGCACAAACCATA 58.134 39.130 21.47 0.00 38.99 2.74
5056 6478 3.326588 TGACACTACACTACATGGCCTTT 59.673 43.478 3.32 0.00 0.00 3.11
5165 6592 3.573967 CCAAACCACAGGTGCTTTTAGAT 59.426 43.478 0.00 0.00 35.34 1.98
5192 6619 4.373156 ACTCCATAACAGCTTTTCCAGT 57.627 40.909 0.00 0.00 0.00 4.00
5282 6709 3.418684 TTAAACAGGCTCTCAGAACCC 57.581 47.619 0.00 0.00 0.00 4.11
5302 6730 7.227910 ACAATCTTACACAACCAACGTTAGATT 59.772 33.333 0.00 5.93 34.68 2.40
5440 7069 7.880059 ATTAGATGAAAAGCTTGAAAACAGC 57.120 32.000 0.00 0.00 37.56 4.40
5495 7131 5.759273 GCCCATGCATAATGCTTTAAATTGA 59.241 36.000 0.00 0.00 45.31 2.57
5545 7189 1.135228 GTGTTTTCACGGCTTTGGTGT 60.135 47.619 0.00 0.00 41.13 4.16
5562 7206 3.120086 AAAGCTGGTCGGGCAGTGT 62.120 57.895 0.00 0.00 0.00 3.55
5566 7210 2.476852 TATGCAAAGCTGGTCGGGCA 62.477 55.000 0.00 0.00 35.54 5.36
5583 7227 1.338769 GCTTCCCCACCGCGATATTAT 60.339 52.381 8.23 0.00 0.00 1.28
5630 7275 8.898983 GCGTTATGCTAAAACAATTAGGTAAA 57.101 30.769 0.00 0.00 41.73 2.01
5938 7684 4.505191 CCTTGTCATGTTGTTTTGCTTCTG 59.495 41.667 0.00 0.00 0.00 3.02
6415 8165 8.070034 TGACTTTTCATGCATGGAAGAAATAT 57.930 30.769 32.08 19.12 30.92 1.28
6529 8285 5.250235 CTTCTCAAGCTAGTCATCGGTAA 57.750 43.478 0.00 0.00 0.00 2.85
6655 8532 7.010460 GCAGGCAATCAAACAATACTTATTTCC 59.990 37.037 0.00 0.00 0.00 3.13
6720 8680 2.665052 GTCGCTACAAAGTAGAAACCCG 59.335 50.000 8.29 2.37 0.00 5.28
6741 8701 5.628797 AAAAGGCCAATTAACCCATATGG 57.371 39.130 15.41 15.41 41.37 2.74
6742 8702 9.054922 CAAATAAAAGGCCAATTAACCCATATG 57.945 33.333 5.01 0.00 0.00 1.78
6762 8724 4.806952 AGCTGGGTATAAGGCCAAATAA 57.193 40.909 5.01 0.00 0.00 1.40
6767 8729 2.357777 GGAAAAGCTGGGTATAAGGCCA 60.358 50.000 5.01 0.00 0.00 5.36
6782 8755 2.554370 TCACAGGGTTACCGGAAAAG 57.446 50.000 9.46 0.00 43.47 2.27
6797 8770 3.689347 ACTGGTACCACGTACTATCACA 58.311 45.455 11.60 0.00 38.85 3.58
6802 8775 3.057596 CCGAAAACTGGTACCACGTACTA 60.058 47.826 11.60 0.00 38.85 1.82
6856 8829 6.105397 AGTATCTCCAACTAACAACGGAAA 57.895 37.500 0.00 0.00 0.00 3.13
7079 10960 6.096564 ACAGTACCCTTGTAGTATAACTCTGC 59.903 42.308 0.00 0.00 0.00 4.26
7196 11084 9.844790 TGCATCAAGAAAGAATTGTTATAAGTG 57.155 29.630 0.00 0.00 0.00 3.16
7201 11104 6.927416 TGCTGCATCAAGAAAGAATTGTTAT 58.073 32.000 0.00 0.00 0.00 1.89
7203 11106 5.204409 TGCTGCATCAAGAAAGAATTGTT 57.796 34.783 0.00 0.00 0.00 2.83
7217 11120 5.272397 GCTAAAGAGAGAATTTGCTGCATC 58.728 41.667 1.84 0.00 0.00 3.91
7261 11164 6.226787 ACTTCTAATGCTGACATGCTATACC 58.773 40.000 0.00 0.00 36.36 2.73
7356 11262 4.754667 GACTTCGGGGGTGGCGAC 62.755 72.222 0.00 0.00 0.00 5.19
7363 11269 1.207329 CTCCAACTAAGACTTCGGGGG 59.793 57.143 0.00 0.00 0.00 5.40
7368 11274 8.716909 CAAAGAAATCTCTCCAACTAAGACTTC 58.283 37.037 0.00 0.00 0.00 3.01
7371 11277 6.937465 ACCAAAGAAATCTCTCCAACTAAGAC 59.063 38.462 0.00 0.00 0.00 3.01
7373 11279 6.150140 CCACCAAAGAAATCTCTCCAACTAAG 59.850 42.308 0.00 0.00 0.00 2.18
7501 11450 7.278135 TCCACATCATCAATCTCCTTTTCTAG 58.722 38.462 0.00 0.00 0.00 2.43
7593 11545 3.497103 AGCTGACTGGCATGCAATATA 57.503 42.857 21.36 1.38 34.17 0.86
7651 11603 6.007703 CCTAAACAAACCCTAATGAAGGTCA 58.992 40.000 0.00 0.00 44.90 4.02
7708 11663 6.628919 AAGTACTACCAAAACAATCGCTTT 57.371 33.333 0.00 0.00 0.00 3.51
7731 11686 3.581332 CCCTACAGGTCAACAGGAAACTA 59.419 47.826 0.00 0.00 40.21 2.24
7742 11697 1.204146 GGCTCAATCCCTACAGGTCA 58.796 55.000 0.00 0.00 36.75 4.02
7745 11700 1.410004 TACGGCTCAATCCCTACAGG 58.590 55.000 0.00 0.00 0.00 4.00
7753 11708 4.926238 CCTTATCACTGATACGGCTCAATC 59.074 45.833 8.30 0.00 29.51 2.67
7882 11839 7.763528 TGTATATTGCAAAATCGGCATTTTTCT 59.236 29.630 1.71 0.00 39.75 2.52
7884 11841 7.840342 TGTATATTGCAAAATCGGCATTTTT 57.160 28.000 1.71 0.00 39.75 1.94
7885 11842 7.548780 AGTTGTATATTGCAAAATCGGCATTTT 59.451 29.630 1.71 2.99 42.03 1.82
7886 11843 7.041107 AGTTGTATATTGCAAAATCGGCATTT 58.959 30.769 1.71 0.00 41.58 2.32
7887 11844 6.572519 AGTTGTATATTGCAAAATCGGCATT 58.427 32.000 1.71 0.00 41.58 3.56
7888 11845 6.147864 AGTTGTATATTGCAAAATCGGCAT 57.852 33.333 1.71 0.00 41.58 4.40
7889 11846 5.574891 AGTTGTATATTGCAAAATCGGCA 57.425 34.783 1.71 0.00 40.00 5.69
7890 11847 7.193595 AGTTAGTTGTATATTGCAAAATCGGC 58.806 34.615 1.71 0.00 0.00 5.54
7983 11977 5.417894 TGTCTCTGTTATCAGTCACGGTAAT 59.582 40.000 0.83 0.00 41.91 1.89
8009 12003 5.258051 CGGGGAGTAGAGATAGCTTTCTAT 58.742 45.833 6.67 6.61 38.19 1.98
8016 12010 0.885196 CAGCGGGGAGTAGAGATAGC 59.115 60.000 0.00 0.00 0.00 2.97
8019 12013 0.820074 CGTCAGCGGGGAGTAGAGAT 60.820 60.000 0.00 0.00 0.00 2.75
8059 12053 1.287815 CCTTCCGCGTGTAGACACA 59.712 57.895 12.98 0.00 46.75 3.72
8061 12055 1.246649 TAACCTTCCGCGTGTAGACA 58.753 50.000 4.92 0.00 0.00 3.41
8066 12086 1.223187 CAAGTTAACCTTCCGCGTGT 58.777 50.000 4.92 0.00 0.00 4.49
8071 12091 1.905637 AAGGGCAAGTTAACCTTCCG 58.094 50.000 0.88 0.00 40.45 4.30
8117 12138 5.852738 ACAAAGAGAAACATGATCGACAG 57.147 39.130 0.00 0.00 0.00 3.51
8119 12140 5.990408 ACAACAAAGAGAAACATGATCGAC 58.010 37.500 0.00 0.00 0.00 4.20
8132 12153 8.579863 AGATTTGGAGGATTAAACAACAAAGAG 58.420 33.333 0.00 0.00 31.03 2.85
8153 12174 3.140325 TGGAGCACGAAAAGGAGATTT 57.860 42.857 0.00 0.00 0.00 2.17
8208 12229 2.226437 CACACAGACTAATGTTGCACCC 59.774 50.000 0.00 0.00 0.00 4.61
8246 12368 6.013032 AGCCATATAGATTAGCTCACCAATGT 60.013 38.462 0.00 0.00 0.00 2.71
8262 12384 6.166984 TCTTCCAGAAGTTGAGCCATATAG 57.833 41.667 7.26 0.00 39.38 1.31
8323 12445 6.270815 TCATGCAGTATCCGAGTAACTAAAC 58.729 40.000 0.00 0.00 0.00 2.01
8342 12464 3.134127 GCACCGGGGAACTCATGC 61.134 66.667 8.67 0.00 0.00 4.06
8355 12478 7.786178 TTATCATGTCACATAAGTAAGCACC 57.214 36.000 0.00 0.00 0.00 5.01
8437 12560 5.831702 AAAACGGATGTATCTAGACGAGT 57.168 39.130 0.00 0.00 0.00 4.18
8462 12585 5.546110 TCCCTCCGATCCATATTAATTGTCA 59.454 40.000 0.00 0.00 0.00 3.58
8539 12662 6.213677 TGAGGTACAAACGATATCAGTATGC 58.786 40.000 3.12 0.00 34.76 3.14
8543 12666 6.037172 GCAAATGAGGTACAAACGATATCAGT 59.963 38.462 3.12 0.00 0.00 3.41
8613 12736 2.284190 GTGTCCTTGAGATAAGCTGCC 58.716 52.381 0.00 0.00 0.00 4.85
8721 12844 2.817844 GGGAAAACTGGACATGTGGTAC 59.182 50.000 1.15 0.00 0.00 3.34
8756 12879 5.596836 TCCTTCTGCAAACACAAGAAATT 57.403 34.783 0.00 0.00 0.00 1.82
8768 12891 2.224523 ACACGGATCTTTCCTTCTGCAA 60.225 45.455 0.00 0.00 40.17 4.08
8945 13068 0.177836 ATACATGCCGCACTGCTACA 59.822 50.000 0.00 0.00 0.00 2.74
9059 13183 5.172687 TGAACCCAACTATATGCAAGTCA 57.827 39.130 0.00 0.00 0.00 3.41
9086 13211 2.002586 CTGTTTACCTGCAGATCCGTG 58.997 52.381 17.39 0.00 34.87 4.94
9088 13213 1.009829 GCTGTTTACCTGCAGATCCG 58.990 55.000 17.39 0.00 37.89 4.18
9094 13219 0.179043 TCGGTTGCTGTTTACCTGCA 60.179 50.000 0.00 0.00 45.08 4.41
9105 13230 2.154462 CCAGTTGAAATCTCGGTTGCT 58.846 47.619 0.00 0.00 0.00 3.91
9243 13368 4.685169 AATAGCACTCATTCACAAACGG 57.315 40.909 0.00 0.00 0.00 4.44
9256 13381 7.432869 TGATTGTAAAAGCAACAAATAGCACT 58.567 30.769 0.00 0.00 40.05 4.40
9278 13403 3.055385 ACGGCTACCAATAACACACTGAT 60.055 43.478 0.00 0.00 0.00 2.90
9337 13462 1.957877 GGAACTGACTAGGATCGGAGG 59.042 57.143 0.00 0.00 0.00 4.30
9341 13466 3.133003 ACAATGGGAACTGACTAGGATCG 59.867 47.826 0.00 0.00 0.00 3.69
9367 13492 8.999431 TGAGTAGAAATGTGGACAATTAAGTTC 58.001 33.333 0.00 0.00 0.00 3.01
9373 13498 5.707298 CAGGTGAGTAGAAATGTGGACAATT 59.293 40.000 0.00 0.00 0.00 2.32
9380 13505 5.078411 AGTAGCAGGTGAGTAGAAATGTG 57.922 43.478 0.00 0.00 0.00 3.21
9381 13506 4.160626 GGAGTAGCAGGTGAGTAGAAATGT 59.839 45.833 0.00 0.00 0.00 2.71
9400 13525 2.997897 GGCAGTGGAGGTCGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
9414 13539 3.785859 GCCATGTCCTCCTCGGCA 61.786 66.667 0.00 0.00 42.50 5.69
9417 13542 3.432051 GACGGCCATGTCCTCCTCG 62.432 68.421 2.24 0.00 32.61 4.63
9456 13581 1.982073 GCAATCACGGTAGCACCTGC 61.982 60.000 4.21 3.25 35.66 4.85
9457 13582 0.391661 AGCAATCACGGTAGCACCTG 60.392 55.000 4.21 2.57 35.66 4.00
9493 13618 1.474677 CCCATCAGAGCAGTAGCAAGG 60.475 57.143 0.00 0.00 45.49 3.61
9503 13628 2.875094 AATATCTGCCCCATCAGAGC 57.125 50.000 0.00 0.00 45.22 4.09
9504 13629 3.843027 ACCTAATATCTGCCCCATCAGAG 59.157 47.826 0.00 0.00 45.22 3.35
9522 13647 4.260985 CATGTTAAGTGTGGCATCACCTA 58.739 43.478 13.96 5.79 42.98 3.08
9530 13655 2.162681 AGGAAGCATGTTAAGTGTGGC 58.837 47.619 0.00 0.00 0.00 5.01
9535 13660 6.494835 AGAATTTGGAAGGAAGCATGTTAAGT 59.505 34.615 0.00 0.00 0.00 2.24
9539 13664 4.834496 TCAGAATTTGGAAGGAAGCATGTT 59.166 37.500 0.00 0.00 0.00 2.71
9550 13675 8.256605 TCAAATGTGACTTTTCAGAATTTGGAA 58.743 29.630 15.80 0.00 41.79 3.53
9602 13727 9.248291 GACTCATGTTTTGTGAACATTAACAAT 57.752 29.630 12.67 3.66 38.69 2.71
9713 13838 6.165700 ACAAATCCAGATGCTTTGTCTTTT 57.834 33.333 6.14 0.00 38.38 2.27
9718 13843 5.796424 AAAGACAAATCCAGATGCTTTGT 57.204 34.783 9.93 9.93 43.68 2.83
9719 13844 6.073440 CCAAAAAGACAAATCCAGATGCTTTG 60.073 38.462 0.00 0.00 36.26 2.77
9722 13847 4.590222 ACCAAAAAGACAAATCCAGATGCT 59.410 37.500 0.00 0.00 0.00 3.79
9723 13848 4.886579 ACCAAAAAGACAAATCCAGATGC 58.113 39.130 0.00 0.00 0.00 3.91
9724 13849 7.280652 ACAAAACCAAAAAGACAAATCCAGATG 59.719 33.333 0.00 0.00 0.00 2.90
9725 13850 7.337938 ACAAAACCAAAAAGACAAATCCAGAT 58.662 30.769 0.00 0.00 0.00 2.90
9726 13851 6.706295 ACAAAACCAAAAAGACAAATCCAGA 58.294 32.000 0.00 0.00 0.00 3.86
9727 13852 6.593382 TGACAAAACCAAAAAGACAAATCCAG 59.407 34.615 0.00 0.00 0.00 3.86
9728 13853 6.467677 TGACAAAACCAAAAAGACAAATCCA 58.532 32.000 0.00 0.00 0.00 3.41
9729 13854 6.976636 TGACAAAACCAAAAAGACAAATCC 57.023 33.333 0.00 0.00 0.00 3.01
9730 13855 8.450180 ACATTGACAAAACCAAAAAGACAAATC 58.550 29.630 0.00 0.00 0.00 2.17
9731 13856 8.334263 ACATTGACAAAACCAAAAAGACAAAT 57.666 26.923 0.00 0.00 0.00 2.32
9732 13857 7.736447 ACATTGACAAAACCAAAAAGACAAA 57.264 28.000 0.00 0.00 0.00 2.83
9733 13858 7.736447 AACATTGACAAAACCAAAAAGACAA 57.264 28.000 0.00 0.00 0.00 3.18
9734 13859 7.227512 ACAAACATTGACAAAACCAAAAAGACA 59.772 29.630 0.00 0.00 0.00 3.41
9735 13860 7.580600 ACAAACATTGACAAAACCAAAAAGAC 58.419 30.769 0.00 0.00 0.00 3.01
9736 13861 7.736447 ACAAACATTGACAAAACCAAAAAGA 57.264 28.000 0.00 0.00 0.00 2.52
9737 13862 8.794308 AAACAAACATTGACAAAACCAAAAAG 57.206 26.923 0.00 0.00 0.00 2.27
9738 13863 9.023967 CAAAACAAACATTGACAAAACCAAAAA 57.976 25.926 0.00 0.00 0.00 1.94
9739 13864 8.405531 TCAAAACAAACATTGACAAAACCAAAA 58.594 25.926 0.00 0.00 30.94 2.44
9740 13865 7.930217 TCAAAACAAACATTGACAAAACCAAA 58.070 26.923 0.00 0.00 30.94 3.28
9741 13866 7.496529 TCAAAACAAACATTGACAAAACCAA 57.503 28.000 0.00 0.00 30.94 3.67
9742 13867 7.496529 TTCAAAACAAACATTGACAAAACCA 57.503 28.000 0.00 0.00 35.42 3.67
9743 13868 8.962857 AATTCAAAACAAACATTGACAAAACC 57.037 26.923 0.00 0.00 35.42 3.27
9748 13873 9.746711 CGTAAAAATTCAAAACAAACATTGACA 57.253 25.926 0.00 0.00 35.42 3.58
9749 13874 9.204792 CCGTAAAAATTCAAAACAAACATTGAC 57.795 29.630 0.00 0.00 35.42 3.18
9750 13875 8.936864 ACCGTAAAAATTCAAAACAAACATTGA 58.063 25.926 0.00 0.00 33.93 2.57
9751 13876 9.548208 AACCGTAAAAATTCAAAACAAACATTG 57.452 25.926 0.00 0.00 0.00 2.82
9753 13878 9.548208 CAAACCGTAAAAATTCAAAACAAACAT 57.452 25.926 0.00 0.00 0.00 2.71
9754 13879 8.557029 ACAAACCGTAAAAATTCAAAACAAACA 58.443 25.926 0.00 0.00 0.00 2.83
9755 13880 8.936509 ACAAACCGTAAAAATTCAAAACAAAC 57.063 26.923 0.00 0.00 0.00 2.93
9757 13882 8.870879 CCTACAAACCGTAAAAATTCAAAACAA 58.129 29.630 0.00 0.00 0.00 2.83
9758 13883 7.010275 GCCTACAAACCGTAAAAATTCAAAACA 59.990 33.333 0.00 0.00 0.00 2.83
9759 13884 7.010275 TGCCTACAAACCGTAAAAATTCAAAAC 59.990 33.333 0.00 0.00 0.00 2.43
9760 13885 7.010275 GTGCCTACAAACCGTAAAAATTCAAAA 59.990 33.333 0.00 0.00 0.00 2.44
9761 13886 6.476053 GTGCCTACAAACCGTAAAAATTCAAA 59.524 34.615 0.00 0.00 0.00 2.69
9762 13887 5.978322 GTGCCTACAAACCGTAAAAATTCAA 59.022 36.000 0.00 0.00 0.00 2.69
9763 13888 5.067413 TGTGCCTACAAACCGTAAAAATTCA 59.933 36.000 0.00 0.00 32.88 2.57
9764 13889 5.521544 TGTGCCTACAAACCGTAAAAATTC 58.478 37.500 0.00 0.00 32.88 2.17
9765 13890 5.517322 TGTGCCTACAAACCGTAAAAATT 57.483 34.783 0.00 0.00 32.88 1.82
9766 13891 5.010213 ACATGTGCCTACAAACCGTAAAAAT 59.990 36.000 0.00 0.00 40.84 1.82
9767 13892 4.338682 ACATGTGCCTACAAACCGTAAAAA 59.661 37.500 0.00 0.00 40.84 1.94
9768 13893 3.884091 ACATGTGCCTACAAACCGTAAAA 59.116 39.130 0.00 0.00 40.84 1.52
9769 13894 3.478509 ACATGTGCCTACAAACCGTAAA 58.521 40.909 0.00 0.00 40.84 2.01
9770 13895 3.068560 GACATGTGCCTACAAACCGTAA 58.931 45.455 1.15 0.00 40.84 3.18
9771 13896 2.613474 GGACATGTGCCTACAAACCGTA 60.613 50.000 1.15 0.00 40.84 4.02
9772 13897 1.519408 GACATGTGCCTACAAACCGT 58.481 50.000 1.15 0.00 40.84 4.83
9773 13898 0.802494 GGACATGTGCCTACAAACCG 59.198 55.000 1.15 0.00 40.84 4.44
9774 13899 2.084546 GAGGACATGTGCCTACAAACC 58.915 52.381 14.38 0.00 40.84 3.27
9775 13900 2.744202 CAGAGGACATGTGCCTACAAAC 59.256 50.000 14.38 3.38 40.84 2.93
9776 13901 2.637382 TCAGAGGACATGTGCCTACAAA 59.363 45.455 14.38 0.24 40.84 2.83
9777 13902 2.256306 TCAGAGGACATGTGCCTACAA 58.744 47.619 14.38 1.80 40.84 2.41
9778 13903 1.937191 TCAGAGGACATGTGCCTACA 58.063 50.000 14.38 0.00 41.89 2.74
9779 13904 3.550437 ATTCAGAGGACATGTGCCTAC 57.450 47.619 14.38 6.24 35.44 3.18
9780 13905 5.366477 TGAATATTCAGAGGACATGTGCCTA 59.634 40.000 14.23 0.98 31.56 3.93
9781 13906 4.164796 TGAATATTCAGAGGACATGTGCCT 59.835 41.667 14.23 14.39 33.18 4.75
9782 13907 4.454678 TGAATATTCAGAGGACATGTGCC 58.545 43.478 14.23 9.76 32.50 5.01
9836 13961 9.617523 AATCCAATTTTCTGAAAAGTCACATTT 57.382 25.926 19.14 5.91 33.22 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.