Multiple sequence alignment - TraesCS1B01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G258800 chr1B 100.000 4445 0 0 1 4445 456256361 456251917 0.000000e+00 8209.0
1 TraesCS1B01G258800 chr1D 89.809 3925 195 91 644 4445 340649174 340645332 0.000000e+00 4843.0
2 TraesCS1B01G258800 chr1D 87.546 273 24 3 252 519 340649799 340649532 1.550000e-79 307.0
3 TraesCS1B01G258800 chr1D 86.134 238 15 9 45 267 340650051 340649817 1.600000e-59 241.0
4 TraesCS1B01G258800 chr1D 89.744 78 2 5 522 599 340649251 340649180 1.320000e-15 95.3
5 TraesCS1B01G258800 chr1A 87.192 1421 71 44 2798 4130 440414018 440412621 0.000000e+00 1513.0
6 TraesCS1B01G258800 chr1A 87.197 742 35 24 670 1375 440416271 440415554 0.000000e+00 789.0
7 TraesCS1B01G258800 chr1A 88.275 597 35 10 2248 2812 440414657 440414064 0.000000e+00 682.0
8 TraesCS1B01G258800 chr1A 82.183 797 64 28 1374 2125 440415491 440414728 8.170000e-172 614.0
9 TraesCS1B01G258800 chr1A 84.899 543 36 25 91 622 440417064 440416557 1.430000e-139 507.0
10 TraesCS1B01G258800 chr1A 91.536 319 19 4 4127 4445 440411504 440411194 2.460000e-117 433.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G258800 chr1B 456251917 456256361 4444 True 8209.000000 8209 100.000000 1 4445 1 chr1B.!!$R1 4444
1 TraesCS1B01G258800 chr1D 340645332 340650051 4719 True 1371.575000 4843 88.308250 45 4445 4 chr1D.!!$R1 4400
2 TraesCS1B01G258800 chr1A 440411194 440417064 5870 True 756.333333 1513 86.880333 91 4445 6 chr1A.!!$R1 4354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.108898 CTGACTGACAGGCCGAAGAG 60.109 60.0 5.67 0.0 42.39 2.85 F
159 172 0.111446 CGGAGCCTCCTCATCCTCTA 59.889 60.0 9.52 0.0 39.96 2.43 F
618 958 0.111639 TTCCCTTTCCTTTGGGGTCG 59.888 55.0 0.00 0.0 43.51 4.79 F
1228 1876 0.250252 TGCATGTCGTGTGTGGTGAT 60.250 50.0 0.00 0.0 0.00 3.06 F
1240 1888 0.392998 GTGGTGATGGTGGGCTACTG 60.393 60.0 0.00 0.0 0.00 2.74 F
2655 3499 0.308068 GAGCAGAATCGATCGTCCGA 59.692 55.0 15.94 0.0 43.16 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 2591 0.034089 ATGTAAACTCCTGGCTGGCC 60.034 55.000 5.39 4.43 35.26 5.36 R
2037 2812 0.462789 CCAATCCAATCCAAGCAGGC 59.537 55.000 0.00 0.00 37.29 4.85 R
2577 3417 2.032681 GCAGGGTGAGTGGTGACC 59.967 66.667 0.00 0.00 0.00 4.02 R
2639 3483 1.846782 GTGTTCGGACGATCGATTCTG 59.153 52.381 24.34 14.93 39.03 3.02 R
2689 3533 3.608316 AGCAAAAGTCCAAAGCAACAA 57.392 38.095 0.00 0.00 0.00 2.83 R
4197 6357 1.002069 TGGCCCAAATCATCCAGTCT 58.998 50.000 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.436998 GCGTCCGGGGACTGACTG 62.437 72.222 15.40 1.31 41.85 3.51
19 20 2.675423 CGTCCGGGGACTGACTGA 60.675 66.667 15.40 0.00 41.85 3.41
20 21 2.971452 GTCCGGGGACTGACTGAC 59.029 66.667 10.60 0.00 40.94 3.51
21 22 1.906824 GTCCGGGGACTGACTGACA 60.907 63.158 10.60 0.00 40.94 3.58
29 30 4.586618 CTGACTGACAGGCCGAAG 57.413 61.111 5.67 0.00 42.39 3.79
30 31 1.967535 CTGACTGACAGGCCGAAGA 59.032 57.895 5.67 0.00 42.39 2.87
31 32 0.108898 CTGACTGACAGGCCGAAGAG 60.109 60.000 5.67 0.00 42.39 2.85
32 33 1.216710 GACTGACAGGCCGAAGAGG 59.783 63.158 7.51 0.00 44.97 3.69
33 34 1.228894 ACTGACAGGCCGAAGAGGA 60.229 57.895 7.51 0.00 45.00 3.71
159 172 0.111446 CGGAGCCTCCTCATCCTCTA 59.889 60.000 9.52 0.00 39.96 2.43
173 186 3.706389 TCCTCTACTCCATTCCATCCA 57.294 47.619 0.00 0.00 0.00 3.41
174 187 3.581101 TCCTCTACTCCATTCCATCCAG 58.419 50.000 0.00 0.00 0.00 3.86
178 193 1.588239 ACTCCATTCCATCCAGCAGA 58.412 50.000 0.00 0.00 0.00 4.26
181 196 1.213678 TCCATTCCATCCAGCAGAAGG 59.786 52.381 0.00 0.00 34.45 3.46
183 198 2.158505 CCATTCCATCCAGCAGAAGGAT 60.159 50.000 2.07 0.00 46.61 3.24
193 208 4.594491 TCCAGCAGAAGGATAGATAATGCA 59.406 41.667 0.00 0.00 34.71 3.96
201 216 5.152623 AGGATAGATAATGCAGCGCTTAA 57.847 39.130 7.50 0.00 0.00 1.85
202 217 5.738909 AGGATAGATAATGCAGCGCTTAAT 58.261 37.500 7.50 0.26 0.00 1.40
205 220 7.989741 AGGATAGATAATGCAGCGCTTAATTAT 59.010 33.333 24.35 24.35 0.00 1.28
407 461 3.713963 ACAACGAACGGTGTCTGC 58.286 55.556 12.13 0.00 43.35 4.26
425 479 1.702299 CAACGATCACGGCTCGAAC 59.298 57.895 9.95 0.00 44.46 3.95
457 521 1.306296 CCCGTCCAACCCATCCAAT 59.694 57.895 0.00 0.00 0.00 3.16
474 538 3.933048 ATCCGTCGTCCCTGTCCGT 62.933 63.158 0.00 0.00 0.00 4.69
481 545 1.884444 GTCCCTGTCCGTCTGTCTC 59.116 63.158 0.00 0.00 0.00 3.36
519 583 4.156477 GGATAGAGTGGATCCAGTAGCTT 58.844 47.826 22.37 10.64 42.26 3.74
521 585 5.417580 GGATAGAGTGGATCCAGTAGCTTAG 59.582 48.000 22.37 0.00 42.26 2.18
522 586 2.962421 AGAGTGGATCCAGTAGCTTAGC 59.038 50.000 22.37 7.99 0.00 3.09
523 587 2.962421 GAGTGGATCCAGTAGCTTAGCT 59.038 50.000 22.37 12.67 43.41 3.32
525 589 2.036604 GTGGATCCAGTAGCTTAGCTCC 59.963 54.545 16.81 4.61 40.44 4.70
526 590 2.091055 TGGATCCAGTAGCTTAGCTCCT 60.091 50.000 11.09 0.30 40.44 3.69
527 591 2.560981 GGATCCAGTAGCTTAGCTCCTC 59.439 54.545 11.09 2.88 40.44 3.71
528 592 1.681538 TCCAGTAGCTTAGCTCCTCG 58.318 55.000 11.09 0.00 40.44 4.63
547 887 1.472276 GATCGTCACCGTGATCGCAC 61.472 60.000 4.13 4.82 41.67 5.34
557 897 2.962253 GATCGCACGCAGCTACCC 60.962 66.667 0.00 0.00 42.61 3.69
600 940 5.891551 TGGAGCAGAGTTACTTTTCCTTTTT 59.108 36.000 0.00 0.00 32.74 1.94
602 942 6.392625 AGCAGAGTTACTTTTCCTTTTTCC 57.607 37.500 0.00 0.00 0.00 3.13
603 943 5.302059 AGCAGAGTTACTTTTCCTTTTTCCC 59.698 40.000 0.00 0.00 0.00 3.97
612 952 6.414732 ACTTTTCCTTTTTCCCTTTCCTTTG 58.585 36.000 0.00 0.00 0.00 2.77
613 953 5.366482 TTTCCTTTTTCCCTTTCCTTTGG 57.634 39.130 0.00 0.00 0.00 3.28
614 954 3.313791 TCCTTTTTCCCTTTCCTTTGGG 58.686 45.455 0.00 0.00 44.66 4.12
615 955 2.371841 CCTTTTTCCCTTTCCTTTGGGG 59.628 50.000 0.00 0.00 43.51 4.96
617 957 2.391926 TTTCCCTTTCCTTTGGGGTC 57.608 50.000 0.00 0.00 43.51 4.46
618 958 0.111639 TTCCCTTTCCTTTGGGGTCG 59.888 55.000 0.00 0.00 43.51 4.79
620 960 1.765074 CCTTTCCTTTGGGGTCGGA 59.235 57.895 0.00 0.00 36.25 4.55
622 962 0.400594 CTTTCCTTTGGGGTCGGAGT 59.599 55.000 0.00 0.00 36.25 3.85
623 963 1.626825 CTTTCCTTTGGGGTCGGAGTA 59.373 52.381 0.00 0.00 36.25 2.59
624 964 1.272807 TTCCTTTGGGGTCGGAGTAG 58.727 55.000 0.00 0.00 36.25 2.57
625 965 1.221021 CCTTTGGGGTCGGAGTAGC 59.779 63.158 0.00 0.00 0.00 3.58
627 967 2.573609 CTTTGGGGTCGGAGTAGCGG 62.574 65.000 0.00 0.00 0.00 5.52
628 968 3.588817 TTGGGGTCGGAGTAGCGGA 62.589 63.158 0.00 0.00 0.00 5.54
629 969 3.217743 GGGGTCGGAGTAGCGGAG 61.218 72.222 0.00 0.00 0.00 4.63
630 970 2.439883 GGGTCGGAGTAGCGGAGT 60.440 66.667 0.00 0.00 0.00 3.85
631 971 1.153086 GGGTCGGAGTAGCGGAGTA 60.153 63.158 0.00 0.00 0.00 2.59
632 972 0.749454 GGGTCGGAGTAGCGGAGTAA 60.749 60.000 0.00 0.00 0.00 2.24
634 974 1.001597 GGTCGGAGTAGCGGAGTAATG 60.002 57.143 0.00 0.00 0.00 1.90
635 975 1.674962 GTCGGAGTAGCGGAGTAATGT 59.325 52.381 0.00 0.00 0.00 2.71
636 976 2.874701 GTCGGAGTAGCGGAGTAATGTA 59.125 50.000 0.00 0.00 0.00 2.29
637 977 2.874701 TCGGAGTAGCGGAGTAATGTAC 59.125 50.000 0.00 0.00 0.00 2.90
638 978 2.877168 CGGAGTAGCGGAGTAATGTACT 59.123 50.000 0.00 0.00 42.86 2.73
642 1240 5.049543 GGAGTAGCGGAGTAATGTACTGTAG 60.050 48.000 0.00 0.00 39.59 2.74
658 1256 9.798994 ATGTACTGTAGTAGAGAAATAAAACGG 57.201 33.333 0.48 0.00 0.00 4.44
660 1258 6.932947 ACTGTAGTAGAGAAATAAAACGGCT 58.067 36.000 0.48 0.00 0.00 5.52
661 1259 7.034397 ACTGTAGTAGAGAAATAAAACGGCTC 58.966 38.462 0.48 0.00 0.00 4.70
663 1261 5.416271 AGTAGAGAAATAAAACGGCTCCA 57.584 39.130 0.00 0.00 0.00 3.86
665 1263 3.000727 AGAGAAATAAAACGGCTCCACG 58.999 45.455 0.00 0.00 40.31 4.94
827 1425 4.419921 GGCCCCACCGTAACCCAG 62.420 72.222 0.00 0.00 0.00 4.45
829 1427 4.419921 CCCCACCGTAACCCAGCC 62.420 72.222 0.00 0.00 0.00 4.85
830 1428 4.419921 CCCACCGTAACCCAGCCC 62.420 72.222 0.00 0.00 0.00 5.19
831 1429 4.419921 CCACCGTAACCCAGCCCC 62.420 72.222 0.00 0.00 0.00 5.80
832 1430 4.770874 CACCGTAACCCAGCCCCG 62.771 72.222 0.00 0.00 0.00 5.73
834 1432 4.157120 CCGTAACCCAGCCCCGAG 62.157 72.222 0.00 0.00 0.00 4.63
835 1433 4.157120 CGTAACCCAGCCCCGAGG 62.157 72.222 0.00 0.00 0.00 4.63
895 1515 4.154347 CCGAGCTCACCAGGCCTC 62.154 72.222 15.40 0.00 0.00 4.70
896 1516 3.073735 CGAGCTCACCAGGCCTCT 61.074 66.667 15.40 0.00 0.00 3.69
897 1517 2.899505 GAGCTCACCAGGCCTCTC 59.100 66.667 9.40 0.69 0.00 3.20
898 1518 1.685421 GAGCTCACCAGGCCTCTCT 60.685 63.158 9.40 0.00 0.00 3.10
973 1593 4.648626 AGCTCCGGCAAGCAAGCA 62.649 61.111 16.73 0.00 45.00 3.91
974 1594 3.673484 GCTCCGGCAAGCAAGCAA 61.673 61.111 10.16 0.00 42.05 3.91
975 1595 2.564975 CTCCGGCAAGCAAGCAAG 59.435 61.111 0.00 0.00 35.83 4.01
976 1596 3.621892 CTCCGGCAAGCAAGCAAGC 62.622 63.158 0.00 0.00 35.83 4.01
990 1618 0.607489 GCAAGCTCAGCCCAAAGAGA 60.607 55.000 0.00 0.00 33.74 3.10
1020 1648 1.203441 TGGAGGTGGAGATGCAGCTT 61.203 55.000 5.67 0.00 0.00 3.74
1030 1658 2.002963 GATGCAGCTTGACGACGACG 62.003 60.000 5.58 5.58 45.75 5.12
1062 1690 1.061570 GCTCAGCAAGCGGATTTCG 59.938 57.895 0.00 0.00 42.21 3.46
1142 1770 2.347490 CCTCCCACCGGTGAGTTG 59.653 66.667 36.07 18.49 0.00 3.16
1152 1791 2.631545 ACCGGTGAGTTGCTTACTTACT 59.368 45.455 6.12 0.00 41.71 2.24
1158 1797 7.086376 CGGTGAGTTGCTTACTTACTTACTTA 58.914 38.462 11.95 0.00 41.71 2.24
1180 1819 3.118223 ACTTCCTGGCTTATTACTGCTCC 60.118 47.826 0.00 0.00 0.00 4.70
1225 1873 1.855213 GCATGCATGTCGTGTGTGGT 61.855 55.000 26.79 0.00 34.19 4.16
1228 1876 0.250252 TGCATGTCGTGTGTGGTGAT 60.250 50.000 0.00 0.00 0.00 3.06
1230 1878 0.798159 CATGTCGTGTGTGGTGATGG 59.202 55.000 0.00 0.00 0.00 3.51
1231 1879 0.396435 ATGTCGTGTGTGGTGATGGT 59.604 50.000 0.00 0.00 0.00 3.55
1232 1880 0.531753 TGTCGTGTGTGGTGATGGTG 60.532 55.000 0.00 0.00 0.00 4.17
1233 1881 1.070615 TCGTGTGTGGTGATGGTGG 59.929 57.895 0.00 0.00 0.00 4.61
1235 1883 2.115052 TGTGTGGTGATGGTGGGC 59.885 61.111 0.00 0.00 0.00 5.36
1236 1884 2.436109 GTGTGGTGATGGTGGGCT 59.564 61.111 0.00 0.00 0.00 5.19
1237 1885 1.130678 TGTGTGGTGATGGTGGGCTA 61.131 55.000 0.00 0.00 0.00 3.93
1238 1886 0.676782 GTGTGGTGATGGTGGGCTAC 60.677 60.000 0.00 0.00 0.00 3.58
1239 1887 0.840288 TGTGGTGATGGTGGGCTACT 60.840 55.000 0.00 0.00 0.00 2.57
1240 1888 0.392998 GTGGTGATGGTGGGCTACTG 60.393 60.000 0.00 0.00 0.00 2.74
1241 1889 0.546507 TGGTGATGGTGGGCTACTGA 60.547 55.000 0.00 0.00 0.00 3.41
1251 1899 3.393509 GCTACTGAGCTCGCTTGC 58.606 61.111 9.64 7.49 45.98 4.01
1286 1934 2.903784 TGGGTTAGCTCTGCTTCTGTTA 59.096 45.455 0.00 0.00 40.44 2.41
1302 1954 0.523519 GTTAGGTTCTTGCAGCTGGC 59.476 55.000 17.12 8.54 45.13 4.85
1325 1977 2.038814 GCTGGCTAGGGGCTTCTCTC 62.039 65.000 0.00 0.00 41.46 3.20
1353 2015 1.609841 GGTAGTTAGTTGGTGGCGCTT 60.610 52.381 7.64 0.00 0.00 4.68
1489 2216 3.700350 CCCTCCCCTCCACTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
1500 2227 4.263949 CCCTCCACTCCCTTGATTAAAAGT 60.264 45.833 0.00 0.00 0.00 2.66
1599 2348 6.276832 TCTTCAGTTAGTATAAGCAACCGT 57.723 37.500 0.00 0.00 0.00 4.83
1615 2364 4.766375 CAACCGTCTTGTCCCACTAATAT 58.234 43.478 0.00 0.00 0.00 1.28
1636 2390 4.486125 TTACTTAGCATCCTCATGTGCA 57.514 40.909 8.54 0.00 43.63 4.57
1655 2410 0.874390 ACAGGCGCTATGTGTTGTTG 59.126 50.000 16.24 0.00 0.00 3.33
1656 2411 0.454957 CAGGCGCTATGTGTTGTTGC 60.455 55.000 7.64 0.00 0.00 4.17
1680 2435 2.896801 CGCCCGCTGTGGATTATGC 61.897 63.158 9.25 1.96 42.00 3.14
1681 2436 2.555547 GCCCGCTGTGGATTATGCC 61.556 63.158 9.25 0.00 42.00 4.40
1682 2437 1.152984 CCCGCTGTGGATTATGCCA 60.153 57.895 9.25 0.00 42.00 4.92
1685 2440 1.382522 CGCTGTGGATTATGCCAGTT 58.617 50.000 0.00 0.00 38.95 3.16
1686 2441 2.560504 CGCTGTGGATTATGCCAGTTA 58.439 47.619 0.00 0.00 38.95 2.24
1687 2442 2.545526 CGCTGTGGATTATGCCAGTTAG 59.454 50.000 0.00 0.00 38.95 2.34
1689 2444 3.947834 GCTGTGGATTATGCCAGTTAGTT 59.052 43.478 0.00 0.00 38.95 2.24
1690 2445 5.123227 GCTGTGGATTATGCCAGTTAGTTA 58.877 41.667 0.00 0.00 38.95 2.24
1711 2471 8.451908 AGTTATAAGTGGTTGATTAAGATGGC 57.548 34.615 0.00 0.00 0.00 4.40
1817 2591 6.143438 GCAGAATTTTTGATGGATAAGCATCG 59.857 38.462 0.00 0.00 31.33 3.84
1906 2680 3.826157 TGGTGCATTTAGAGGAAACCAAG 59.174 43.478 0.00 0.00 0.00 3.61
1934 2709 6.257630 CCTTTTGTGTGAAATCGACCATTTTT 59.742 34.615 0.00 0.00 34.60 1.94
2037 2812 7.727181 TGCTTAAGCCTCCTAGTAATAAAGAG 58.273 38.462 24.30 0.00 41.18 2.85
2049 2832 5.760131 AGTAATAAAGAGCCTGCTTGGATT 58.240 37.500 0.00 0.00 38.35 3.01
2110 2893 2.429250 TCCGAAAGAGTTGTGTGTGAGA 59.571 45.455 0.00 0.00 0.00 3.27
2128 2927 4.009675 TGAGAAGCACTCTTTGTTGTGTT 58.990 39.130 11.18 0.00 45.13 3.32
2232 3031 3.085443 GCAACTAATCTGCTCGCTCTA 57.915 47.619 0.00 0.00 36.84 2.43
2243 3042 1.606903 CTCGCTCTACTAACCCGGAT 58.393 55.000 0.73 0.00 0.00 4.18
2309 3114 6.841443 GTGATATTCACTCATGGTCAGAAG 57.159 41.667 0.45 0.00 43.73 2.85
2313 3118 1.693606 TCACTCATGGTCAGAAGCACA 59.306 47.619 0.00 0.00 35.32 4.57
2314 3119 2.104622 TCACTCATGGTCAGAAGCACAA 59.895 45.455 0.00 0.00 35.32 3.33
2341 3148 2.674796 AACATGTCCCTCTCGTTAGC 57.325 50.000 0.00 0.00 0.00 3.09
2493 3320 6.104665 ACTTTACCGCTCCAAAGATTACTAC 58.895 40.000 7.52 0.00 35.70 2.73
2496 3323 5.259832 ACCGCTCCAAAGATTACTACTAC 57.740 43.478 0.00 0.00 0.00 2.73
2497 3324 4.954826 ACCGCTCCAAAGATTACTACTACT 59.045 41.667 0.00 0.00 0.00 2.57
2560 3400 1.066918 GCCCATACGTAGACGGTGG 59.933 63.158 17.02 17.02 43.84 4.61
2577 3417 2.864343 GGTGGCAATTAGTAGTAGCACG 59.136 50.000 0.00 0.00 0.00 5.34
2654 3498 0.661780 GGAGCAGAATCGATCGTCCG 60.662 60.000 15.94 0.00 0.00 4.79
2655 3499 0.308068 GAGCAGAATCGATCGTCCGA 59.692 55.000 15.94 0.00 43.16 4.55
2689 3533 1.831106 TGCATACGACCAAGTGATCCT 59.169 47.619 0.00 0.00 0.00 3.24
2812 3727 4.891260 TCCCCTTTTCTTTTCTCTACGTC 58.109 43.478 0.00 0.00 0.00 4.34
2827 3742 7.770801 TCTCTACGTCCAAATATGATGTTTG 57.229 36.000 7.57 7.57 36.55 2.93
2828 3743 6.257849 TCTCTACGTCCAAATATGATGTTTGC 59.742 38.462 8.88 0.00 35.71 3.68
2831 3746 4.458989 ACGTCCAAATATGATGTTTGCAGT 59.541 37.500 8.88 5.83 35.71 4.40
2837 3752 9.237187 TCCAAATATGATGTTTGCAGTACTTTA 57.763 29.630 8.88 0.00 35.71 1.85
2880 3804 1.192793 GCTACGTGACAAGATCGAGC 58.807 55.000 0.00 0.00 0.00 5.03
2985 3916 1.149174 CAGCTATTGGCCACCGGAT 59.851 57.895 9.46 0.00 43.05 4.18
2986 3917 0.466189 CAGCTATTGGCCACCGGATT 60.466 55.000 9.46 0.00 43.05 3.01
2987 3918 0.258774 AGCTATTGGCCACCGGATTT 59.741 50.000 9.46 0.00 43.05 2.17
3246 4197 2.667536 AGAACGTGGCAGCAGCAG 60.668 61.111 2.65 0.00 44.61 4.24
3251 4202 4.353437 GTGGCAGCAGCAGCAACC 62.353 66.667 12.41 4.58 45.49 3.77
3627 4598 1.077265 CCATTGTTGCTCCCAGGGT 59.923 57.895 5.01 0.00 0.00 4.34
3703 4687 3.266636 CACACCACACCGATAATAAGCA 58.733 45.455 0.00 0.00 0.00 3.91
3706 4690 3.938963 CACCACACCGATAATAAGCAGTT 59.061 43.478 0.00 0.00 0.00 3.16
3736 4720 6.940298 ACGTAGTGTTTTAGGGTACTACTGTA 59.060 38.462 0.00 0.00 42.51 2.74
3875 4883 6.980978 TCTGTAAGATTAATGTACTGCTGCTC 59.019 38.462 0.00 0.00 38.67 4.26
3877 4885 3.722147 AGATTAATGTACTGCTGCTCCG 58.278 45.455 0.00 0.00 0.00 4.63
3878 4886 3.133003 AGATTAATGTACTGCTGCTCCGT 59.867 43.478 0.00 0.00 0.00 4.69
3879 4887 3.328382 TTAATGTACTGCTGCTCCGTT 57.672 42.857 0.00 0.00 0.00 4.44
3881 4889 3.328382 AATGTACTGCTGCTCCGTTAA 57.672 42.857 0.00 0.00 0.00 2.01
3882 4890 2.823924 TGTACTGCTGCTCCGTTAAA 57.176 45.000 0.00 0.00 0.00 1.52
3884 4892 2.297880 TGTACTGCTGCTCCGTTAAAGA 59.702 45.455 0.00 0.00 0.00 2.52
3885 4893 2.543777 ACTGCTGCTCCGTTAAAGAA 57.456 45.000 0.00 0.00 0.00 2.52
3897 4909 3.911964 CCGTTAAAGAAAATGCAACGAGG 59.088 43.478 6.72 0.00 43.37 4.63
3919 4931 3.777465 ATGATTGATGTCTTGTGCTGC 57.223 42.857 0.00 0.00 0.00 5.25
3938 4952 3.503363 GTGCTGGGCTCATGCGTC 61.503 66.667 0.00 0.00 40.82 5.19
4064 5098 1.148273 GTAGCATGGGGATTGGCGA 59.852 57.895 0.00 0.00 0.00 5.54
4073 5107 1.376609 GGGATTGGCGAGATTGCGTT 61.377 55.000 0.00 0.00 35.06 4.84
4154 6314 9.487790 CTAAAGATCTTGTCCAGATATTTCCTC 57.512 37.037 9.17 0.00 46.24 3.71
4168 6328 6.601613 AGATATTTCCTCATCGGAGTAGCTAG 59.398 42.308 0.00 0.00 44.28 3.42
4169 6329 3.579534 TTCCTCATCGGAGTAGCTAGT 57.420 47.619 0.00 0.00 44.28 2.57
4170 6330 4.701651 TTCCTCATCGGAGTAGCTAGTA 57.298 45.455 0.00 0.00 44.28 1.82
4192 6352 3.667448 CCAGCTCGAAATCGATGGA 57.333 52.632 16.67 0.00 46.11 3.41
4195 6355 2.034685 CCAGCTCGAAATCGATGGAGTA 59.965 50.000 16.67 0.00 46.11 2.59
4196 6356 4.097763 CCAGCTCGAAATCGATGGAGTAC 61.098 52.174 16.67 6.92 46.11 2.73
4197 6357 6.514404 CCAGCTCGAAATCGATGGAGTACA 62.514 50.000 16.67 0.00 46.11 2.90
4215 6375 1.341383 ACAGACTGGATGATTTGGGCC 60.341 52.381 7.51 0.00 0.00 5.80
4287 6447 2.031465 CGCAGTAACGGGGGTGTT 59.969 61.111 0.00 0.00 35.86 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.878656 CTGTCAGTCAGTCCCCGGAC 61.879 65.000 0.73 5.70 44.86 4.79
4 5 1.606601 CTGTCAGTCAGTCCCCGGA 60.607 63.158 0.73 0.00 39.17 5.14
5 6 2.650116 CCTGTCAGTCAGTCCCCGG 61.650 68.421 0.00 0.00 42.19 5.73
6 7 2.973899 CCTGTCAGTCAGTCCCCG 59.026 66.667 0.00 0.00 42.19 5.73
7 8 2.665603 GCCTGTCAGTCAGTCCCC 59.334 66.667 0.00 0.00 42.19 4.81
8 9 2.665603 GGCCTGTCAGTCAGTCCC 59.334 66.667 0.00 0.00 42.19 4.46
9 10 1.816863 TTCGGCCTGTCAGTCAGTCC 61.817 60.000 0.00 0.00 42.19 3.85
10 11 0.389166 CTTCGGCCTGTCAGTCAGTC 60.389 60.000 0.00 0.00 42.19 3.51
11 12 0.827925 TCTTCGGCCTGTCAGTCAGT 60.828 55.000 0.00 0.00 42.19 3.41
12 13 0.108898 CTCTTCGGCCTGTCAGTCAG 60.109 60.000 0.00 0.00 43.27 3.51
13 14 1.536073 CCTCTTCGGCCTGTCAGTCA 61.536 60.000 0.00 0.00 0.00 3.41
14 15 1.216710 CCTCTTCGGCCTGTCAGTC 59.783 63.158 0.00 0.00 0.00 3.51
15 16 1.228894 TCCTCTTCGGCCTGTCAGT 60.229 57.895 0.00 0.00 0.00 3.41
16 17 1.216710 GTCCTCTTCGGCCTGTCAG 59.783 63.158 0.00 0.00 0.00 3.51
17 18 2.636412 CGTCCTCTTCGGCCTGTCA 61.636 63.158 0.00 0.00 0.00 3.58
18 19 2.182030 CGTCCTCTTCGGCCTGTC 59.818 66.667 0.00 0.00 0.00 3.51
19 20 3.382832 CCGTCCTCTTCGGCCTGT 61.383 66.667 0.00 0.00 41.48 4.00
20 21 4.148825 CCCGTCCTCTTCGGCCTG 62.149 72.222 0.00 0.00 45.71 4.85
159 172 1.588239 TCTGCTGGATGGAATGGAGT 58.412 50.000 0.00 0.00 0.00 3.85
173 186 4.577875 GCTGCATTATCTATCCTTCTGCT 58.422 43.478 0.00 0.00 0.00 4.24
174 187 3.370366 CGCTGCATTATCTATCCTTCTGC 59.630 47.826 0.00 0.00 0.00 4.26
178 193 3.692257 AGCGCTGCATTATCTATCCTT 57.308 42.857 10.39 0.00 0.00 3.36
219 234 6.649557 AGAGAAAGTGACGGGTTGTTTATTAG 59.350 38.462 0.00 0.00 0.00 1.73
227 242 1.419374 CGAGAGAAAGTGACGGGTTG 58.581 55.000 0.00 0.00 0.00 3.77
403 457 1.446099 GAGCCGTGATCGTTGCAGA 60.446 57.895 3.46 0.00 35.01 4.26
407 461 0.732880 AGTTCGAGCCGTGATCGTTG 60.733 55.000 10.49 0.00 42.30 4.10
439 493 0.751643 GATTGGATGGGTTGGACGGG 60.752 60.000 0.00 0.00 0.00 5.28
442 496 0.034477 ACGGATTGGATGGGTTGGAC 60.034 55.000 0.00 0.00 0.00 4.02
457 521 4.648626 ACGGACAGGGACGACGGA 62.649 66.667 0.00 0.00 0.00 4.69
481 545 4.566004 TCTATCCGTTTCTGTTTCTGGTG 58.434 43.478 0.00 0.00 0.00 4.17
519 583 2.704108 GGTGACGATCGAGGAGCTA 58.296 57.895 24.34 0.00 0.00 3.32
547 887 4.609018 CGGATGGGGGTAGCTGCG 62.609 72.222 0.00 0.00 0.00 5.18
548 888 4.937431 GCGGATGGGGGTAGCTGC 62.937 72.222 0.00 0.00 0.00 5.25
549 889 2.343475 ATTGCGGATGGGGGTAGCTG 62.343 60.000 0.00 0.00 0.00 4.24
550 890 1.645402 AATTGCGGATGGGGGTAGCT 61.645 55.000 0.00 0.00 0.00 3.32
557 897 2.408835 GCACGAATTGCGGATGGG 59.591 61.111 0.00 0.00 46.49 4.00
602 942 0.322546 CTCCGACCCCAAAGGAAAGG 60.323 60.000 0.00 0.00 39.89 3.11
603 943 0.400594 ACTCCGACCCCAAAGGAAAG 59.599 55.000 0.00 0.00 39.89 2.62
612 952 2.615227 TACTCCGCTACTCCGACCCC 62.615 65.000 0.00 0.00 0.00 4.95
613 953 0.749454 TTACTCCGCTACTCCGACCC 60.749 60.000 0.00 0.00 0.00 4.46
614 954 1.001597 CATTACTCCGCTACTCCGACC 60.002 57.143 0.00 0.00 0.00 4.79
615 955 1.674962 ACATTACTCCGCTACTCCGAC 59.325 52.381 0.00 0.00 0.00 4.79
617 957 2.877168 AGTACATTACTCCGCTACTCCG 59.123 50.000 0.00 0.00 32.47 4.63
618 958 3.631227 ACAGTACATTACTCCGCTACTCC 59.369 47.826 0.00 0.00 36.76 3.85
620 960 5.435291 ACTACAGTACATTACTCCGCTACT 58.565 41.667 0.00 0.00 36.76 2.57
622 962 6.820335 TCTACTACAGTACATTACTCCGCTA 58.180 40.000 0.00 0.00 36.76 4.26
623 963 5.678583 TCTACTACAGTACATTACTCCGCT 58.321 41.667 0.00 0.00 36.76 5.52
624 964 5.757320 TCTCTACTACAGTACATTACTCCGC 59.243 44.000 0.00 0.00 36.76 5.54
625 965 7.783090 TTCTCTACTACAGTACATTACTCCG 57.217 40.000 0.00 0.00 36.76 4.63
632 972 9.798994 CCGTTTTATTTCTCTACTACAGTACAT 57.201 33.333 0.00 0.00 0.00 2.29
634 974 7.972832 AGCCGTTTTATTTCTCTACTACAGTAC 59.027 37.037 0.00 0.00 0.00 2.73
635 975 8.059798 AGCCGTTTTATTTCTCTACTACAGTA 57.940 34.615 0.00 0.00 0.00 2.74
636 976 6.932947 AGCCGTTTTATTTCTCTACTACAGT 58.067 36.000 0.00 0.00 0.00 3.55
637 977 6.476053 GGAGCCGTTTTATTTCTCTACTACAG 59.524 42.308 0.00 0.00 0.00 2.74
638 978 6.071221 TGGAGCCGTTTTATTTCTCTACTACA 60.071 38.462 0.00 0.00 0.00 2.74
642 1240 4.032558 CGTGGAGCCGTTTTATTTCTCTAC 59.967 45.833 0.00 0.00 33.66 2.59
687 1285 1.019278 ACATCATCGCCGGAACACAC 61.019 55.000 5.05 0.00 0.00 3.82
688 1286 1.018752 CACATCATCGCCGGAACACA 61.019 55.000 5.05 0.00 0.00 3.72
689 1287 1.705337 CCACATCATCGCCGGAACAC 61.705 60.000 5.05 0.00 0.00 3.32
690 1288 1.449423 CCACATCATCGCCGGAACA 60.449 57.895 5.05 0.00 0.00 3.18
691 1289 2.180204 CCCACATCATCGCCGGAAC 61.180 63.158 5.05 0.00 0.00 3.62
768 1366 0.688487 TAGTTGGAAAGGTCGTGGGG 59.312 55.000 0.00 0.00 0.00 4.96
819 1417 3.793888 CCCTCGGGGCTGGGTTAC 61.794 72.222 0.00 0.00 38.65 2.50
820 1418 3.995809 CTCCCTCGGGGCTGGGTTA 62.996 68.421 0.00 0.00 43.94 2.85
834 1432 0.831711 TTTTTCCAGGGCAAGCTCCC 60.832 55.000 2.05 2.05 46.93 4.30
835 1433 1.205655 GATTTTTCCAGGGCAAGCTCC 59.794 52.381 0.00 0.00 0.00 4.70
836 1434 2.174360 AGATTTTTCCAGGGCAAGCTC 58.826 47.619 0.00 0.00 0.00 4.09
837 1435 2.315720 AGATTTTTCCAGGGCAAGCT 57.684 45.000 0.00 0.00 0.00 3.74
893 1513 2.378038 CAGGGGAACAGAGAGAGAGAG 58.622 57.143 0.00 0.00 0.00 3.20
894 1514 1.618345 GCAGGGGAACAGAGAGAGAGA 60.618 57.143 0.00 0.00 0.00 3.10
895 1515 0.823460 GCAGGGGAACAGAGAGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
896 1516 0.411452 AGCAGGGGAACAGAGAGAGA 59.589 55.000 0.00 0.00 0.00 3.10
897 1517 0.823460 GAGCAGGGGAACAGAGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
898 1518 0.616111 GGAGCAGGGGAACAGAGAGA 60.616 60.000 0.00 0.00 0.00 3.10
973 1593 1.271817 CCTTCTCTTTGGGCTGAGCTT 60.272 52.381 3.72 0.00 0.00 3.74
974 1594 0.327591 CCTTCTCTTTGGGCTGAGCT 59.672 55.000 3.72 0.00 0.00 4.09
975 1595 0.326264 TCCTTCTCTTTGGGCTGAGC 59.674 55.000 0.00 0.00 0.00 4.26
976 1596 1.678425 GCTCCTTCTCTTTGGGCTGAG 60.678 57.143 0.00 0.00 0.00 3.35
990 1618 1.333636 CCACCTCCATCTCGCTCCTT 61.334 60.000 0.00 0.00 0.00 3.36
1030 1658 0.800300 CTGAGCTCCGCGAAGAAGAC 60.800 60.000 8.23 0.00 0.00 3.01
1062 1690 1.226717 GTCGTCGGTGATGAGGAGC 60.227 63.158 0.00 0.00 33.80 4.70
1142 1770 6.534436 GCCAGGAAGTAAGTAAGTAAGTAAGC 59.466 42.308 0.00 0.00 0.00 3.09
1152 1791 7.046033 GCAGTAATAAGCCAGGAAGTAAGTAA 58.954 38.462 0.00 0.00 0.00 2.24
1158 1797 3.118223 GGAGCAGTAATAAGCCAGGAAGT 60.118 47.826 0.00 0.00 0.00 3.01
1180 1819 1.982073 GCGGGAGAAATGGCAAGACG 61.982 60.000 0.00 0.00 0.00 4.18
1203 1842 2.033911 ACACGACATGCATGCCCA 59.966 55.556 26.53 0.00 0.00 5.36
1225 1873 1.907739 GCTCAGTAGCCCACCATCA 59.092 57.895 0.00 0.00 43.40 3.07
1286 1934 2.282745 GGCCAGCTGCAAGAACCT 60.283 61.111 8.66 0.00 43.89 3.50
1325 1977 4.181578 CACCAACTAACTACCAATCGAGG 58.818 47.826 0.00 0.00 0.00 4.63
1479 2206 5.886960 CACTTTTAATCAAGGGAGTGGAG 57.113 43.478 0.00 0.00 32.88 3.86
1483 2210 5.701224 TGTTCCACTTTTAATCAAGGGAGT 58.299 37.500 0.00 0.00 29.82 3.85
1489 2216 4.138290 TCGGCTGTTCCACTTTTAATCAA 58.862 39.130 0.00 0.00 34.01 2.57
1500 2227 0.756294 TGTCTTCTTCGGCTGTTCCA 59.244 50.000 0.00 0.00 34.01 3.53
1599 2348 8.313944 TGCTAAGTAATATTAGTGGGACAAGA 57.686 34.615 3.54 0.00 44.16 3.02
1615 2364 4.191544 GTGCACATGAGGATGCTAAGTAA 58.808 43.478 13.17 0.00 42.55 2.24
1636 2390 0.874390 CAACAACACATAGCGCCTGT 59.126 50.000 2.29 5.41 0.00 4.00
1673 2428 8.904099 ACCACTTATAACTAACTGGCATAATC 57.096 34.615 0.00 0.00 28.86 1.75
1678 2433 6.116711 TCAACCACTTATAACTAACTGGCA 57.883 37.500 0.00 0.00 28.86 4.92
1685 2440 9.555727 GCCATCTTAATCAACCACTTATAACTA 57.444 33.333 0.00 0.00 0.00 2.24
1686 2441 7.502561 GGCCATCTTAATCAACCACTTATAACT 59.497 37.037 0.00 0.00 0.00 2.24
1687 2442 7.519970 CGGCCATCTTAATCAACCACTTATAAC 60.520 40.741 2.24 0.00 0.00 1.89
1689 2444 5.995282 CGGCCATCTTAATCAACCACTTATA 59.005 40.000 2.24 0.00 0.00 0.98
1690 2445 4.821805 CGGCCATCTTAATCAACCACTTAT 59.178 41.667 2.24 0.00 0.00 1.73
1783 2549 3.953766 TCAAAAATTCTGCGCGTAAACA 58.046 36.364 8.43 0.00 0.00 2.83
1817 2591 0.034089 ATGTAAACTCCTGGCTGGCC 60.034 55.000 5.39 4.43 35.26 5.36
1839 2613 1.095228 AAAGGTACATCCATGCGCGG 61.095 55.000 8.83 0.00 39.02 6.46
1884 2658 3.517296 TGGTTTCCTCTAAATGCACCA 57.483 42.857 0.00 0.00 0.00 4.17
1924 2699 2.928295 GCAACTTGCAAAAATGGTCG 57.072 45.000 8.97 0.00 44.26 4.79
2014 2789 7.156000 GGCTCTTTATTACTAGGAGGCTTAAG 58.844 42.308 0.00 0.00 43.26 1.85
2019 2794 4.801247 GCAGGCTCTTTATTACTAGGAGGC 60.801 50.000 7.97 7.97 45.69 4.70
2020 2795 4.591072 AGCAGGCTCTTTATTACTAGGAGG 59.409 45.833 0.00 0.00 0.00 4.30
2021 2796 5.799827 AGCAGGCTCTTTATTACTAGGAG 57.200 43.478 0.00 0.00 0.00 3.69
2023 2798 5.059833 CCAAGCAGGCTCTTTATTACTAGG 58.940 45.833 0.00 0.00 0.00 3.02
2024 2799 5.918608 TCCAAGCAGGCTCTTTATTACTAG 58.081 41.667 0.00 0.00 37.29 2.57
2025 2800 5.950544 TCCAAGCAGGCTCTTTATTACTA 57.049 39.130 0.00 0.00 37.29 1.82
2026 2801 4.844349 TCCAAGCAGGCTCTTTATTACT 57.156 40.909 0.00 0.00 37.29 2.24
2027 2802 5.221126 CCAATCCAAGCAGGCTCTTTATTAC 60.221 44.000 0.00 0.00 37.29 1.89
2037 2812 0.462789 CCAATCCAATCCAAGCAGGC 59.537 55.000 0.00 0.00 37.29 4.85
2049 2832 3.388676 GCAATCCAATCCAATCCAATCCA 59.611 43.478 0.00 0.00 0.00 3.41
2110 2893 5.897377 ACTTAACACAACAAAGAGTGCTT 57.103 34.783 0.00 0.00 39.30 3.91
2198 2997 7.319646 CAGATTAGTTGCTCTCTACTTGTTCT 58.680 38.462 0.00 0.00 31.09 3.01
2228 3027 2.588620 AGAGCATCCGGGTTAGTAGAG 58.411 52.381 0.00 0.00 33.66 2.43
2232 3031 4.262506 GCTAATTAGAGCATCCGGGTTAGT 60.263 45.833 16.85 0.00 42.36 2.24
2243 3042 3.117888 CCCTTTCCTGGCTAATTAGAGCA 60.118 47.826 16.85 0.00 44.76 4.26
2309 3114 4.051237 GGGACATGTTTCTTTCTTTGTGC 58.949 43.478 0.00 0.00 0.00 4.57
2313 3118 4.757149 CGAGAGGGACATGTTTCTTTCTTT 59.243 41.667 0.00 0.00 0.00 2.52
2314 3119 4.202367 ACGAGAGGGACATGTTTCTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
2341 3148 3.922171 AGCTTCTACTTCAGGAATGGG 57.078 47.619 0.00 0.00 0.00 4.00
2493 3320 2.543641 CCGGGCGGTTAAAAGTAGTAG 58.456 52.381 0.00 0.00 0.00 2.57
2560 3400 3.550678 GTGACCGTGCTACTACTAATTGC 59.449 47.826 0.00 0.00 0.00 3.56
2577 3417 2.032681 GCAGGGTGAGTGGTGACC 59.967 66.667 0.00 0.00 0.00 4.02
2630 3470 3.741249 ACGATCGATTCTGCTCCTACTA 58.259 45.455 24.34 0.00 0.00 1.82
2631 3471 2.550606 GACGATCGATTCTGCTCCTACT 59.449 50.000 24.34 0.00 0.00 2.57
2639 3483 1.846782 GTGTTCGGACGATCGATTCTG 59.153 52.381 24.34 14.93 39.03 3.02
2654 3498 6.185399 GTCGTATGCAACATGATAAGTGTTC 58.815 40.000 0.00 0.00 37.69 3.18
2655 3499 5.064707 GGTCGTATGCAACATGATAAGTGTT 59.935 40.000 0.00 0.00 40.23 3.32
2689 3533 3.608316 AGCAAAAGTCCAAAGCAACAA 57.392 38.095 0.00 0.00 0.00 2.83
2880 3804 3.681855 CAAAGATTTCATCTCAGCGCTG 58.318 45.455 31.53 31.53 39.08 5.18
3246 4197 2.979197 CTGCTGCTGCTGAGGTTGC 61.979 63.158 17.00 0.05 40.01 4.17
3249 4200 3.903616 CTGCTGCTGCTGCTGAGGT 62.904 63.158 27.67 0.00 40.01 3.85
3426 4389 6.592607 CAGATTTTCAGGTACGCCTTTTAGTA 59.407 38.462 0.00 0.00 44.18 1.82
3438 4401 7.176515 TGCATTTTTAGAGCAGATTTTCAGGTA 59.823 33.333 0.00 0.00 33.75 3.08
3439 4402 6.015180 TGCATTTTTAGAGCAGATTTTCAGGT 60.015 34.615 0.00 0.00 33.75 4.00
3627 4598 7.172342 AGGGCTCACATTACACATTTAACTAA 58.828 34.615 0.00 0.00 0.00 2.24
3685 4669 3.906720 ACTGCTTATTATCGGTGTGGT 57.093 42.857 0.00 0.00 0.00 4.16
3693 4677 5.749109 ACTACGTGCTCAACTGCTTATTATC 59.251 40.000 0.00 0.00 0.00 1.75
3703 4687 4.056050 CCTAAAACACTACGTGCTCAACT 58.944 43.478 0.00 0.00 36.98 3.16
3706 4690 2.366266 ACCCTAAAACACTACGTGCTCA 59.634 45.455 0.00 0.00 36.98 4.26
3736 4720 2.535317 ATTGTGGGGGCAGGAGGT 60.535 61.111 0.00 0.00 0.00 3.85
3875 4883 3.911964 CCTCGTTGCATTTTCTTTAACGG 59.088 43.478 0.00 0.00 42.90 4.44
3877 4885 6.861055 TCATTCCTCGTTGCATTTTCTTTAAC 59.139 34.615 0.00 0.00 0.00 2.01
3878 4886 6.976088 TCATTCCTCGTTGCATTTTCTTTAA 58.024 32.000 0.00 0.00 0.00 1.52
3879 4887 6.567687 TCATTCCTCGTTGCATTTTCTTTA 57.432 33.333 0.00 0.00 0.00 1.85
3881 4889 5.649782 ATCATTCCTCGTTGCATTTTCTT 57.350 34.783 0.00 0.00 0.00 2.52
3882 4890 5.183713 TCAATCATTCCTCGTTGCATTTTCT 59.816 36.000 0.00 0.00 0.00 2.52
3884 4892 5.389859 TCAATCATTCCTCGTTGCATTTT 57.610 34.783 0.00 0.00 0.00 1.82
3885 4893 5.105635 ACATCAATCATTCCTCGTTGCATTT 60.106 36.000 0.00 0.00 0.00 2.32
3897 4909 4.103357 GCAGCACAAGACATCAATCATTC 58.897 43.478 0.00 0.00 0.00 2.67
3938 4952 1.333435 CGACGGAGAAAACAAAACGGG 60.333 52.381 0.00 0.00 0.00 5.28
4048 5082 1.713005 ATCTCGCCAATCCCCATGCT 61.713 55.000 0.00 0.00 0.00 3.79
4064 5098 1.156736 CGAACTCCCAAACGCAATCT 58.843 50.000 0.00 0.00 0.00 2.40
4073 5107 1.227823 CAGCCACACGAACTCCCAA 60.228 57.895 0.00 0.00 0.00 4.12
4130 5170 7.865820 TGAGGAAATATCTGGACAAGATCTTT 58.134 34.615 4.86 3.46 42.27 2.52
4154 6314 4.072839 TGGATGTACTAGCTACTCCGATG 58.927 47.826 0.00 0.00 30.71 3.84
4168 6328 3.079960 TCGATTTCGAGCTGGATGTAC 57.920 47.619 0.00 0.00 44.22 2.90
4192 6352 3.370953 GCCCAAATCATCCAGTCTGTACT 60.371 47.826 0.00 0.00 35.91 2.73
4195 6355 1.341383 GGCCCAAATCATCCAGTCTGT 60.341 52.381 0.00 0.00 0.00 3.41
4196 6356 1.341285 TGGCCCAAATCATCCAGTCTG 60.341 52.381 0.00 0.00 0.00 3.51
4197 6357 1.002069 TGGCCCAAATCATCCAGTCT 58.998 50.000 0.00 0.00 0.00 3.24
4199 6359 1.690209 CCATGGCCCAAATCATCCAGT 60.690 52.381 0.00 0.00 31.36 4.00
4215 6375 3.561429 CGACACCGGTTGACCATG 58.439 61.111 2.97 0.00 35.14 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.