Multiple sequence alignment - TraesCS1B01G258000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G258000 chr1B 100.000 3653 0 0 1 3653 453883883 453880231 0.000000e+00 6746
1 TraesCS1B01G258000 chr1B 98.421 190 2 1 2763 2952 374010342 374010154 2.100000e-87 333
2 TraesCS1B01G258000 chr1B 98.649 148 2 0 2622 2769 453880856 453880709 2.800000e-66 263
3 TraesCS1B01G258000 chr1B 98.649 148 2 0 3028 3175 453881262 453881115 2.800000e-66 263
4 TraesCS1B01G258000 chr1A 95.875 1988 74 3 782 2769 438701360 438699381 0.000000e+00 3210
5 TraesCS1B01G258000 chr1A 89.506 648 29 8 3018 3653 438699537 438698917 0.000000e+00 784
6 TraesCS1B01G258000 chr1A 90.698 129 7 5 1 129 438701679 438701556 2.260000e-37 167
7 TraesCS1B01G258000 chr1D 96.045 1972 74 2 799 2769 339115068 339113100 0.000000e+00 3206
8 TraesCS1B01G258000 chr1D 94.803 635 24 5 3028 3653 339113248 339112614 0.000000e+00 981
9 TraesCS1B01G258000 chr1D 92.105 76 5 1 2946 3021 339113116 339113042 4.990000e-19 106
10 TraesCS1B01G258000 chr2A 88.310 633 61 11 157 785 367579222 367579845 0.000000e+00 747
11 TraesCS1B01G258000 chr2A 88.533 593 55 8 128 708 96070191 96070782 0.000000e+00 706
12 TraesCS1B01G258000 chr2A 98.930 187 2 0 2764 2950 463183655 463183841 5.840000e-88 335
13 TraesCS1B01G258000 chr7B 95.949 395 14 2 334 728 540160798 540160406 1.110000e-179 640
14 TraesCS1B01G258000 chr4B 95.929 393 15 1 336 728 396387224 396386833 1.430000e-178 636
15 TraesCS1B01G258000 chr4B 97.917 192 2 2 2762 2952 142056734 142056544 7.560000e-87 331
16 TraesCS1B01G258000 chr7D 95.466 397 17 1 332 728 7471173 7470778 1.850000e-177 632
17 TraesCS1B01G258000 chr3A 94.802 404 20 1 329 732 468013721 468013319 2.390000e-176 628
18 TraesCS1B01G258000 chr3A 95.980 199 7 1 2753 2950 379895586 379895784 4.550000e-84 322
19 TraesCS1B01G258000 chr3A 98.361 61 1 0 724 784 688592678 688592618 1.390000e-19 108
20 TraesCS1B01G258000 chr3A 96.774 62 2 0 724 785 531373374 531373435 1.790000e-18 104
21 TraesCS1B01G258000 chr5D 94.975 398 19 1 334 731 19111427 19111031 1.110000e-174 623
22 TraesCS1B01G258000 chr5D 94.975 398 19 1 332 729 480464101 480464497 1.110000e-174 623
23 TraesCS1B01G258000 chr4A 89.300 486 44 7 250 732 615029389 615029869 1.450000e-168 603
24 TraesCS1B01G258000 chr4A 93.421 76 5 0 707 782 15128088 15128013 2.980000e-21 113
25 TraesCS1B01G258000 chr2D 92.150 293 22 1 126 418 72771029 72771320 2.620000e-111 412
26 TraesCS1B01G258000 chr2B 96.244 213 8 0 125 337 575936937 575937149 2.090000e-92 350
27 TraesCS1B01G258000 chr2B 98.936 188 2 0 2763 2950 245011095 245010908 1.630000e-88 337
28 TraesCS1B01G258000 chr2B 98.361 61 1 0 724 784 575937145 575937205 1.390000e-19 108
29 TraesCS1B01G258000 chr5A 90.262 267 22 1 126 388 670102960 670102694 2.700000e-91 346
30 TraesCS1B01G258000 chr3B 96.209 211 6 2 128 337 417053627 417053418 9.710000e-91 344
31 TraesCS1B01G258000 chr3B 99.457 184 1 0 2769 2952 424126938 424126755 5.840000e-88 335
32 TraesCS1B01G258000 chr3B 96.939 196 4 2 2751 2946 141813302 141813109 9.780000e-86 327
33 TraesCS1B01G258000 chr3B 96.875 64 2 0 724 787 799710393 799710330 1.390000e-19 108
34 TraesCS1B01G258000 chr6B 95.349 215 10 0 123 337 579179236 579179450 3.490000e-90 342
35 TraesCS1B01G258000 chr6B 97.436 195 5 0 2756 2950 656277970 656278164 2.100000e-87 333
36 TraesCS1B01G258000 chr6B 97.906 191 3 1 2761 2950 28503838 28503648 2.720000e-86 329
37 TraesCS1B01G258000 chr4D 95.714 210 9 0 128 337 403022815 403023024 4.520000e-89 339
38 TraesCS1B01G258000 chr3D 95.714 210 9 0 128 337 109257677 109257886 4.520000e-89 339
39 TraesCS1B01G258000 chr7A 98.361 61 1 0 724 784 3973715 3973655 1.390000e-19 108
40 TraesCS1B01G258000 chr7A 90.789 76 7 0 709 784 116512213 116512288 6.450000e-18 102
41 TraesCS1B01G258000 chrUn 96.825 63 2 0 724 786 319327511 319327573 4.990000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G258000 chr1B 453880231 453883883 3652 True 2424 6746 99.099333 1 3653 3 chr1B.!!$R2 3652
1 TraesCS1B01G258000 chr1A 438698917 438701679 2762 True 1387 3210 92.026333 1 3653 3 chr1A.!!$R1 3652
2 TraesCS1B01G258000 chr1D 339112614 339115068 2454 True 1431 3206 94.317667 799 3653 3 chr1D.!!$R1 2854
3 TraesCS1B01G258000 chr2A 367579222 367579845 623 False 747 747 88.310000 157 785 1 chr2A.!!$F2 628
4 TraesCS1B01G258000 chr2A 96070191 96070782 591 False 706 706 88.533000 128 708 1 chr2A.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 865 0.107897 TCACCCCGAATCCGTTCATG 60.108 55.0 0.0 0.0 33.86 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2799 2815 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.0 0.0 44.78 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 8.352752 GAAGTATGTTCTTCCTTTGTTTTTGG 57.647 34.615 0.00 0.00 38.18 3.28
117 118 6.816136 AGTATGTTCTTCCTTTGTTTTTGGG 58.184 36.000 0.00 0.00 0.00 4.12
118 119 5.692115 ATGTTCTTCCTTTGTTTTTGGGT 57.308 34.783 0.00 0.00 0.00 4.51
120 121 5.483811 TGTTCTTCCTTTGTTTTTGGGTTC 58.516 37.500 0.00 0.00 0.00 3.62
121 122 4.746535 TCTTCCTTTGTTTTTGGGTTCC 57.253 40.909 0.00 0.00 0.00 3.62
123 124 4.719273 TCTTCCTTTGTTTTTGGGTTCCAT 59.281 37.500 0.00 0.00 31.53 3.41
124 125 5.900123 TCTTCCTTTGTTTTTGGGTTCCATA 59.100 36.000 0.00 0.00 31.53 2.74
125 126 6.556874 TCTTCCTTTGTTTTTGGGTTCCATAT 59.443 34.615 0.00 0.00 31.53 1.78
126 127 7.730784 TCTTCCTTTGTTTTTGGGTTCCATATA 59.269 33.333 0.00 0.00 31.53 0.86
134 135 5.987019 TTTGGGTTCCATATAAGGCTAGT 57.013 39.130 0.00 0.00 31.53 2.57
144 145 5.958380 CCATATAAGGCTAGTCATAGTGGGA 59.042 44.000 0.00 0.00 0.00 4.37
154 155 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
196 197 5.404968 TCAAGAAATTTTTGCTTATGTGGCG 59.595 36.000 0.00 0.00 0.00 5.69
201 202 4.569761 TTTTTGCTTATGTGGCGTGTAA 57.430 36.364 0.00 0.00 0.00 2.41
214 226 5.121611 TGTGGCGTGTAATTAATGAGAAGTG 59.878 40.000 0.00 0.00 0.00 3.16
257 271 1.098050 ATAGCGCTTTCCAAGGCAAG 58.902 50.000 18.68 0.00 0.00 4.01
272 286 2.836981 AGGCAAGATGAGTCTACAAGCT 59.163 45.455 0.00 0.00 33.30 3.74
286 300 8.950208 AGTCTACAAGCTAATAAATGAAGTCC 57.050 34.615 0.00 0.00 0.00 3.85
302 316 7.811117 ATGAAGTCCTCTATGACACTACTAC 57.189 40.000 0.00 0.00 37.73 2.73
396 410 8.301252 GACTAGAAAAAGTCCCTCTTAGAGAT 57.699 38.462 11.32 0.00 40.06 2.75
463 477 6.097412 GGCATTTGGGACTAAATGAAGAAGAT 59.903 38.462 20.68 0.00 46.13 2.40
551 565 1.225983 CCGCCACCCCATGATGTTA 59.774 57.895 0.00 0.00 0.00 2.41
604 618 9.084533 GGGGCAATATGTTCATTTAATAACCTA 57.915 33.333 0.00 0.00 0.00 3.08
625 639 2.553911 AGGAAGGGACTAGGGACTTC 57.446 55.000 11.77 11.77 38.49 3.01
669 684 3.455177 GGAGGGACTTTTTAGGGACTAGG 59.545 52.174 0.00 0.00 40.88 3.02
683 698 5.160386 AGGGACTAGGGACTTTTTAGTTGA 58.840 41.667 0.00 0.00 41.75 3.18
719 734 7.365840 GTCTTAGGACTTATGAACCAAACAG 57.634 40.000 0.00 0.00 39.24 3.16
720 735 6.371825 GTCTTAGGACTTATGAACCAAACAGG 59.628 42.308 0.00 0.00 40.36 4.00
721 736 3.421844 AGGACTTATGAACCAAACAGGC 58.578 45.455 0.00 0.00 43.14 4.85
723 738 2.492088 GACTTATGAACCAAACAGGCCC 59.508 50.000 0.00 0.00 43.14 5.80
739 754 3.034635 AGGCCCTTAGACTAGTGTCATG 58.965 50.000 0.00 0.00 45.20 3.07
742 757 4.589374 GGCCCTTAGACTAGTGTCATGTAT 59.411 45.833 0.00 0.00 45.20 2.29
767 782 6.350629 TGACACTAGTTTAAGTTACTCCCC 57.649 41.667 0.00 0.00 0.00 4.81
768 783 5.840149 TGACACTAGTTTAAGTTACTCCCCA 59.160 40.000 0.00 0.00 0.00 4.96
769 784 6.106648 ACACTAGTTTAAGTTACTCCCCAC 57.893 41.667 0.00 0.00 0.00 4.61
770 785 5.842874 ACACTAGTTTAAGTTACTCCCCACT 59.157 40.000 0.00 0.00 0.00 4.00
791 806 4.777896 ACTATGACCAGCCTAAGAGTCAAA 59.222 41.667 0.00 0.00 42.14 2.69
801 816 4.141597 GCCTAAGAGTCAAAGAGGCCTATT 60.142 45.833 4.42 5.79 45.80 1.73
806 821 5.635120 AGAGTCAAAGAGGCCTATTGTTTT 58.365 37.500 23.26 13.76 0.00 2.43
848 863 1.594833 CTCACCCCGAATCCGTTCA 59.405 57.895 0.00 0.00 33.86 3.18
850 865 0.107897 TCACCCCGAATCCGTTCATG 60.108 55.000 0.00 0.00 33.86 3.07
865 880 0.666374 TCATGTGTCTCACGTCACGT 59.334 50.000 0.00 0.00 42.36 4.49
876 891 2.049433 GTCACGTCACACTCCCCG 60.049 66.667 0.00 0.00 0.00 5.73
1017 1032 2.447408 TTATGCCCTACCTCACTCGA 57.553 50.000 0.00 0.00 0.00 4.04
1026 1041 1.633774 ACCTCACTCGACACATTCCT 58.366 50.000 0.00 0.00 0.00 3.36
1061 1076 2.904866 CTCCCTCTCCTCCGCTCG 60.905 72.222 0.00 0.00 0.00 5.03
1200 1215 2.893895 CTCATGTCCGCGCATGCT 60.894 61.111 17.13 0.00 44.20 3.79
1201 1216 1.592400 CTCATGTCCGCGCATGCTA 60.592 57.895 17.13 5.26 44.20 3.49
1209 1224 2.399611 GCGCATGCTACGTTGGAC 59.600 61.111 17.13 0.00 38.39 4.02
1455 1470 2.434884 CACCTGCAGCGGTTCGAT 60.435 61.111 8.66 0.00 34.29 3.59
1485 1500 2.589157 GGTCGTGGGGTGGATGACA 61.589 63.158 0.00 0.00 31.92 3.58
1539 1554 1.957177 TCGACTCTGATATGTGGGCTC 59.043 52.381 0.00 0.00 0.00 4.70
1640 1655 5.221441 ACACATATACACCTATCATGCACGT 60.221 40.000 0.00 0.00 0.00 4.49
1651 1666 4.026226 TGCACGTGTACTGCACTG 57.974 55.556 18.38 0.00 45.57 3.66
1809 1824 1.003003 GAGGAGAGCAGCTCAAAAGGT 59.997 52.381 24.64 1.85 45.81 3.50
1814 1829 2.165998 GAGCAGCTCAAAAGGTTGGAT 58.834 47.619 18.17 0.00 35.29 3.41
1848 1863 5.357742 TCACATACAGCACTTACATGGAT 57.642 39.130 0.00 0.00 0.00 3.41
1919 1934 0.466189 ATGCTATCCAAGGGGTTGCG 60.466 55.000 0.00 0.00 34.93 4.85
1962 1977 0.881118 TCCTTCTTGATGGCGTTTGC 59.119 50.000 0.00 0.00 41.71 3.68
1973 1988 2.427410 CGTTTGCCGCAGCTCAAC 60.427 61.111 0.00 0.00 40.80 3.18
2078 2093 0.392193 AGGCTTTGTGATGAGCGGAG 60.392 55.000 0.00 0.00 39.78 4.63
2196 2211 0.597568 TTGGGAAGCTTCACAATGCG 59.402 50.000 34.80 0.00 45.03 4.73
2439 2454 4.026744 CACTAGAGGATGGTTTCTCTCCA 58.973 47.826 0.00 0.00 40.45 3.86
2520 2535 5.450965 GCATACTTTGATTGGGTGGATTCTG 60.451 44.000 0.00 0.00 0.00 3.02
2548 2563 3.947834 AGGCTTTGCAATAGATGTGTACC 59.052 43.478 0.00 0.00 0.00 3.34
2762 2778 7.568199 AATTTTAGTGTCATCCTTTATCCGG 57.432 36.000 0.00 0.00 0.00 5.14
2763 2779 5.687166 TTTAGTGTCATCCTTTATCCGGT 57.313 39.130 0.00 0.00 0.00 5.28
2764 2780 5.687166 TTAGTGTCATCCTTTATCCGGTT 57.313 39.130 0.00 0.00 0.00 4.44
2765 2781 3.873910 AGTGTCATCCTTTATCCGGTTG 58.126 45.455 0.00 0.00 0.00 3.77
2766 2782 2.354821 GTGTCATCCTTTATCCGGTTGC 59.645 50.000 0.00 0.00 0.00 4.17
2767 2783 2.238646 TGTCATCCTTTATCCGGTTGCT 59.761 45.455 0.00 0.00 0.00 3.91
2768 2784 2.614057 GTCATCCTTTATCCGGTTGCTG 59.386 50.000 0.00 0.00 0.00 4.41
2769 2785 2.503765 TCATCCTTTATCCGGTTGCTGA 59.496 45.455 0.00 0.00 0.00 4.26
2770 2786 3.054728 TCATCCTTTATCCGGTTGCTGAA 60.055 43.478 0.00 0.00 0.00 3.02
2771 2787 2.985896 TCCTTTATCCGGTTGCTGAAG 58.014 47.619 0.00 0.00 0.00 3.02
2772 2788 2.017049 CCTTTATCCGGTTGCTGAAGG 58.983 52.381 0.00 4.50 0.00 3.46
2773 2789 2.017049 CTTTATCCGGTTGCTGAAGGG 58.983 52.381 0.00 0.00 0.00 3.95
2774 2790 0.254747 TTATCCGGTTGCTGAAGGGG 59.745 55.000 0.00 0.00 0.00 4.79
2775 2791 0.619255 TATCCGGTTGCTGAAGGGGA 60.619 55.000 0.00 0.00 0.00 4.81
2776 2792 1.915078 ATCCGGTTGCTGAAGGGGAG 61.915 60.000 0.00 0.00 0.00 4.30
2777 2793 2.747855 CGGTTGCTGAAGGGGAGC 60.748 66.667 0.00 0.00 36.95 4.70
2778 2794 2.361737 GGTTGCTGAAGGGGAGCC 60.362 66.667 0.00 0.00 35.43 4.70
2779 2795 2.759795 GTTGCTGAAGGGGAGCCT 59.240 61.111 0.00 0.00 35.43 4.58
2780 2796 1.075659 GTTGCTGAAGGGGAGCCTT 59.924 57.895 0.00 0.00 35.43 4.35
2781 2797 1.075482 TTGCTGAAGGGGAGCCTTG 59.925 57.895 0.00 0.00 35.43 3.61
2782 2798 2.044551 GCTGAAGGGGAGCCTTGG 60.045 66.667 0.00 0.00 0.00 3.61
2783 2799 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
2784 2800 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
2792 2808 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2793 2809 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2794 2810 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2795 2811 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2796 2812 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2797 2813 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2798 2814 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2803 2819 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2804 2820 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2805 2821 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2806 2822 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2807 2823 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2808 2824 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2809 2825 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2810 2826 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2811 2827 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2812 2828 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2813 2829 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2814 2830 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2815 2831 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2816 2832 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2817 2833 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2832 2848 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2833 2849 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2834 2850 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2835 2851 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2836 2852 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2837 2853 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2838 2854 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2839 2855 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2840 2856 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2841 2857 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2855 2871 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2856 2872 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2857 2873 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2858 2874 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2859 2875 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2860 2876 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2861 2877 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2862 2878 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2863 2879 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2864 2880 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2865 2881 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2866 2882 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2867 2883 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2868 2884 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2869 2885 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2870 2886 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2871 2887 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2872 2888 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2873 2889 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2874 2890 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2875 2891 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2876 2892 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2877 2893 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2878 2894 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2879 2895 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2880 2896 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2881 2897 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2882 2898 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2883 2899 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2884 2900 2.660670 AGGCTGCGTACTATAGACCT 57.339 50.000 6.78 0.00 0.00 3.85
2885 2901 3.784511 AGGCTGCGTACTATAGACCTA 57.215 47.619 6.78 0.00 0.00 3.08
2886 2902 4.096190 AGGCTGCGTACTATAGACCTAA 57.904 45.455 6.78 0.00 0.00 2.69
2887 2903 4.467769 AGGCTGCGTACTATAGACCTAAA 58.532 43.478 6.78 0.00 0.00 1.85
2888 2904 4.519730 AGGCTGCGTACTATAGACCTAAAG 59.480 45.833 6.78 0.00 0.00 1.85
2889 2905 4.277921 GGCTGCGTACTATAGACCTAAAGT 59.722 45.833 6.78 0.00 0.00 2.66
2890 2906 5.213675 GCTGCGTACTATAGACCTAAAGTG 58.786 45.833 6.78 0.00 0.00 3.16
2891 2907 5.759963 CTGCGTACTATAGACCTAAAGTGG 58.240 45.833 6.78 0.00 0.00 4.00
2892 2908 5.195940 TGCGTACTATAGACCTAAAGTGGT 58.804 41.667 6.78 0.00 44.10 4.16
2898 2914 3.828657 GACCTAAAGTGGTCGGACC 57.171 57.895 20.36 20.36 45.69 4.46
2899 2915 0.248565 GACCTAAAGTGGTCGGACCC 59.751 60.000 23.81 14.91 45.69 4.46
2900 2916 0.178912 ACCTAAAGTGGTCGGACCCT 60.179 55.000 23.81 16.82 37.50 4.34
2901 2917 0.981943 CCTAAAGTGGTCGGACCCTT 59.018 55.000 23.81 21.08 37.50 3.95
2902 2918 1.066358 CCTAAAGTGGTCGGACCCTTC 60.066 57.143 23.81 13.97 37.50 3.46
2903 2919 0.978907 TAAAGTGGTCGGACCCTTCC 59.021 55.000 23.81 9.51 37.50 3.46
2904 2920 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2905 2921 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2906 2922 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2907 2923 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2908 2924 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2909 2925 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2910 2926 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2911 2927 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2912 2928 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2913 2929 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2914 2930 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2915 2931 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2916 2932 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2941 2957 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2942 2958 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2943 2959 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2944 2960 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2950 2966 1.228737 GCACCAGGTTGCCCCTTTA 60.229 57.895 0.00 0.00 42.73 1.85
2954 2970 0.751643 CCAGGTTGCCCCTTTATCCG 60.752 60.000 0.00 0.00 42.73 4.18
2975 2991 3.182173 CGGTTGCTGTTTATGTTGCTTTG 59.818 43.478 0.00 0.00 0.00 2.77
3025 3041 9.581099 AATTTGTTTTTGTTTCGTAAGTGATCT 57.419 25.926 0.00 0.00 39.48 2.75
3026 3042 8.973835 TTTGTTTTTGTTTCGTAAGTGATCTT 57.026 26.923 0.00 0.00 37.65 2.40
3049 3065 9.224267 TCTTATATATTGGAAAGAATGCTCAGC 57.776 33.333 0.00 0.00 0.00 4.26
3050 3066 9.228949 CTTATATATTGGAAAGAATGCTCAGCT 57.771 33.333 0.00 0.00 0.00 4.24
3051 3067 9.578576 TTATATATTGGAAAGAATGCTCAGCTT 57.421 29.630 0.00 0.00 0.00 3.74
3052 3068 3.928727 TTGGAAAGAATGCTCAGCTTG 57.071 42.857 0.00 0.00 0.00 4.01
3053 3069 3.144657 TGGAAAGAATGCTCAGCTTGA 57.855 42.857 0.00 0.00 0.00 3.02
3054 3070 3.079578 TGGAAAGAATGCTCAGCTTGAG 58.920 45.455 0.00 8.34 46.90 3.02
3068 3084 5.563592 TCAGCTTGAGATGATTTTTCTCCA 58.436 37.500 0.00 0.00 39.10 3.86
3069 3085 6.005823 TCAGCTTGAGATGATTTTTCTCCAA 58.994 36.000 0.00 0.00 39.10 3.53
3070 3086 6.072286 TCAGCTTGAGATGATTTTTCTCCAAC 60.072 38.462 0.00 0.00 39.10 3.77
3071 3087 5.771666 AGCTTGAGATGATTTTTCTCCAACA 59.228 36.000 0.00 0.00 39.10 3.33
3072 3088 6.266103 AGCTTGAGATGATTTTTCTCCAACAA 59.734 34.615 0.00 0.00 39.10 2.83
3073 3089 7.039223 AGCTTGAGATGATTTTTCTCCAACAAT 60.039 33.333 0.00 0.00 39.10 2.71
3074 3090 7.601508 GCTTGAGATGATTTTTCTCCAACAATT 59.398 33.333 0.00 0.00 39.10 2.32
3077 3093 9.912634 TGAGATGATTTTTCTCCAACAATTAAC 57.087 29.630 0.00 0.00 39.10 2.01
3078 3094 9.912634 GAGATGATTTTTCTCCAACAATTAACA 57.087 29.630 0.00 0.00 34.75 2.41
3079 3095 9.696917 AGATGATTTTTCTCCAACAATTAACAC 57.303 29.630 0.00 0.00 0.00 3.32
3080 3096 7.922505 TGATTTTTCTCCAACAATTAACACG 57.077 32.000 0.00 0.00 0.00 4.49
3081 3097 7.708051 TGATTTTTCTCCAACAATTAACACGA 58.292 30.769 0.00 0.00 0.00 4.35
3082 3098 8.191446 TGATTTTTCTCCAACAATTAACACGAA 58.809 29.630 0.00 0.00 0.00 3.85
3083 3099 8.934507 ATTTTTCTCCAACAATTAACACGAAA 57.065 26.923 0.00 0.00 0.00 3.46
3084 3100 7.979115 TTTTCTCCAACAATTAACACGAAAG 57.021 32.000 0.00 0.00 0.00 2.62
3085 3101 6.928979 TTCTCCAACAATTAACACGAAAGA 57.071 33.333 0.00 0.00 0.00 2.52
3086 3102 6.928979 TCTCCAACAATTAACACGAAAGAA 57.071 33.333 0.00 0.00 0.00 2.52
3087 3103 7.323049 TCTCCAACAATTAACACGAAAGAAA 57.677 32.000 0.00 0.00 0.00 2.52
3088 3104 7.936584 TCTCCAACAATTAACACGAAAGAAAT 58.063 30.769 0.00 0.00 0.00 2.17
3089 3105 8.410141 TCTCCAACAATTAACACGAAAGAAATT 58.590 29.630 0.00 0.00 0.00 1.82
3090 3106 8.568732 TCCAACAATTAACACGAAAGAAATTC 57.431 30.769 0.00 0.00 34.52 2.17
3091 3107 7.650104 TCCAACAATTAACACGAAAGAAATTCC 59.350 33.333 0.00 0.00 34.34 3.01
3092 3108 7.436673 CCAACAATTAACACGAAAGAAATTCCA 59.563 33.333 0.00 0.00 34.34 3.53
3093 3109 8.479280 CAACAATTAACACGAAAGAAATTCCAG 58.521 33.333 0.00 0.00 34.34 3.86
3094 3110 7.712797 ACAATTAACACGAAAGAAATTCCAGT 58.287 30.769 0.00 0.00 34.34 4.00
3095 3111 8.194769 ACAATTAACACGAAAGAAATTCCAGTT 58.805 29.630 0.00 0.00 36.27 3.16
3096 3112 8.690840 CAATTAACACGAAAGAAATTCCAGTTC 58.309 33.333 0.00 0.00 34.91 3.01
3097 3113 7.562454 TTAACACGAAAGAAATTCCAGTTCT 57.438 32.000 0.00 0.00 36.90 3.01
3098 3114 5.424121 ACACGAAAGAAATTCCAGTTCTG 57.576 39.130 0.00 0.00 35.50 3.02
3099 3115 4.881850 ACACGAAAGAAATTCCAGTTCTGT 59.118 37.500 0.00 0.00 35.50 3.41
3100 3116 6.053005 ACACGAAAGAAATTCCAGTTCTGTA 58.947 36.000 0.00 0.00 35.50 2.74
3101 3117 6.202954 ACACGAAAGAAATTCCAGTTCTGTAG 59.797 38.462 0.00 0.00 35.50 2.74
3102 3118 5.179555 ACGAAAGAAATTCCAGTTCTGTAGC 59.820 40.000 0.00 0.00 35.50 3.58
3103 3119 5.409826 CGAAAGAAATTCCAGTTCTGTAGCT 59.590 40.000 0.00 0.00 35.50 3.32
3104 3120 6.590292 CGAAAGAAATTCCAGTTCTGTAGCTA 59.410 38.462 0.00 0.00 35.50 3.32
3105 3121 7.278868 CGAAAGAAATTCCAGTTCTGTAGCTAT 59.721 37.037 0.00 0.00 35.50 2.97
3106 3122 9.601217 GAAAGAAATTCCAGTTCTGTAGCTATA 57.399 33.333 0.00 0.00 35.50 1.31
3109 3125 9.553064 AGAAATTCCAGTTCTGTAGCTATATTG 57.447 33.333 0.00 0.00 34.03 1.90
3110 3126 9.331282 GAAATTCCAGTTCTGTAGCTATATTGT 57.669 33.333 0.00 0.00 0.00 2.71
3112 3128 9.765795 AATTCCAGTTCTGTAGCTATATTGTAC 57.234 33.333 0.00 0.00 0.00 2.90
3113 3129 8.534954 TTCCAGTTCTGTAGCTATATTGTACT 57.465 34.615 0.00 0.00 0.00 2.73
3114 3130 8.534954 TCCAGTTCTGTAGCTATATTGTACTT 57.465 34.615 0.00 0.00 0.00 2.24
3115 3131 8.978472 TCCAGTTCTGTAGCTATATTGTACTTT 58.022 33.333 0.00 0.00 0.00 2.66
3116 3132 9.250624 CCAGTTCTGTAGCTATATTGTACTTTC 57.749 37.037 0.00 0.00 0.00 2.62
3117 3133 9.250624 CAGTTCTGTAGCTATATTGTACTTTCC 57.749 37.037 0.00 0.00 0.00 3.13
3118 3134 8.978472 AGTTCTGTAGCTATATTGTACTTTCCA 58.022 33.333 0.00 0.00 0.00 3.53
3119 3135 9.595823 GTTCTGTAGCTATATTGTACTTTCCAA 57.404 33.333 0.00 0.00 0.00 3.53
3120 3136 9.817809 TTCTGTAGCTATATTGTACTTTCCAAG 57.182 33.333 0.00 0.00 0.00 3.61
3121 3137 9.197306 TCTGTAGCTATATTGTACTTTCCAAGA 57.803 33.333 0.00 0.00 0.00 3.02
3122 3138 9.988815 CTGTAGCTATATTGTACTTTCCAAGAT 57.011 33.333 0.00 0.00 0.00 2.40
3123 3139 9.982651 TGTAGCTATATTGTACTTTCCAAGATC 57.017 33.333 0.00 0.00 0.00 2.75
3126 3142 9.153479 AGCTATATTGTACTTTCCAAGATCTCT 57.847 33.333 0.00 0.00 0.00 3.10
3170 3186 9.533831 AATTTTAGTGTCATCCTTTATCCAGTT 57.466 29.630 0.00 0.00 0.00 3.16
3171 3187 7.921786 TTTAGTGTCATCCTTTATCCAGTTG 57.078 36.000 0.00 0.00 0.00 3.16
3172 3188 4.265073 AGTGTCATCCTTTATCCAGTTGC 58.735 43.478 0.00 0.00 0.00 4.17
3173 3189 4.018960 AGTGTCATCCTTTATCCAGTTGCT 60.019 41.667 0.00 0.00 0.00 3.91
3174 3190 4.095483 GTGTCATCCTTTATCCAGTTGCTG 59.905 45.833 0.00 0.00 0.00 4.41
3175 3191 4.263462 TGTCATCCTTTATCCAGTTGCTGT 60.263 41.667 0.00 0.00 0.00 4.40
3176 3192 4.702131 GTCATCCTTTATCCAGTTGCTGTT 59.298 41.667 0.00 0.00 0.00 3.16
3177 3193 5.183904 GTCATCCTTTATCCAGTTGCTGTTT 59.816 40.000 0.00 0.00 0.00 2.83
3178 3194 6.374333 GTCATCCTTTATCCAGTTGCTGTTTA 59.626 38.462 0.00 0.00 0.00 2.01
3179 3195 7.067494 GTCATCCTTTATCCAGTTGCTGTTTAT 59.933 37.037 0.00 0.00 0.00 1.40
3180 3196 6.757897 TCCTTTATCCAGTTGCTGTTTATG 57.242 37.500 0.00 0.00 0.00 1.90
3181 3197 6.245408 TCCTTTATCCAGTTGCTGTTTATGT 58.755 36.000 0.00 0.00 0.00 2.29
3182 3198 6.719370 TCCTTTATCCAGTTGCTGTTTATGTT 59.281 34.615 0.00 0.00 0.00 2.71
3183 3199 6.808212 CCTTTATCCAGTTGCTGTTTATGTTG 59.192 38.462 0.00 0.00 0.00 3.33
3184 3200 3.641437 TCCAGTTGCTGTTTATGTTGC 57.359 42.857 0.00 0.00 0.00 4.17
3185 3201 3.221771 TCCAGTTGCTGTTTATGTTGCT 58.778 40.909 0.00 0.00 0.00 3.91
3186 3202 3.636300 TCCAGTTGCTGTTTATGTTGCTT 59.364 39.130 0.00 0.00 0.00 3.91
3187 3203 4.099266 TCCAGTTGCTGTTTATGTTGCTTT 59.901 37.500 0.00 0.00 0.00 3.51
3188 3204 4.209703 CCAGTTGCTGTTTATGTTGCTTTG 59.790 41.667 0.00 0.00 0.00 2.77
3189 3205 4.805192 CAGTTGCTGTTTATGTTGCTTTGT 59.195 37.500 0.00 0.00 0.00 2.83
3190 3206 5.291614 CAGTTGCTGTTTATGTTGCTTTGTT 59.708 36.000 0.00 0.00 0.00 2.83
3191 3207 5.874261 AGTTGCTGTTTATGTTGCTTTGTTT 59.126 32.000 0.00 0.00 0.00 2.83
3192 3208 6.371271 AGTTGCTGTTTATGTTGCTTTGTTTT 59.629 30.769 0.00 0.00 0.00 2.43
3193 3209 6.343226 TGCTGTTTATGTTGCTTTGTTTTC 57.657 33.333 0.00 0.00 0.00 2.29
3194 3210 6.105333 TGCTGTTTATGTTGCTTTGTTTTCT 58.895 32.000 0.00 0.00 0.00 2.52
3195 3211 6.035866 TGCTGTTTATGTTGCTTTGTTTTCTG 59.964 34.615 0.00 0.00 0.00 3.02
3196 3212 6.255453 GCTGTTTATGTTGCTTTGTTTTCTGA 59.745 34.615 0.00 0.00 0.00 3.27
3197 3213 7.201513 GCTGTTTATGTTGCTTTGTTTTCTGAA 60.202 33.333 0.00 0.00 0.00 3.02
3198 3214 7.958674 TGTTTATGTTGCTTTGTTTTCTGAAC 58.041 30.769 0.00 0.00 0.00 3.18
3199 3215 7.600375 TGTTTATGTTGCTTTGTTTTCTGAACA 59.400 29.630 0.00 0.00 0.00 3.18
3200 3216 8.603181 GTTTATGTTGCTTTGTTTTCTGAACAT 58.397 29.630 0.00 0.00 36.69 2.71
3201 3217 9.809096 TTTATGTTGCTTTGTTTTCTGAACATA 57.191 25.926 0.00 0.00 35.01 2.29
3202 3218 9.809096 TTATGTTGCTTTGTTTTCTGAACATAA 57.191 25.926 0.00 0.00 40.14 1.90
3203 3219 7.518731 TGTTGCTTTGTTTTCTGAACATAAC 57.481 32.000 0.00 0.00 0.00 1.89
3204 3220 6.533367 TGTTGCTTTGTTTTCTGAACATAACC 59.467 34.615 0.00 0.00 0.00 2.85
3205 3221 6.463995 TGCTTTGTTTTCTGAACATAACCT 57.536 33.333 0.00 0.00 0.00 3.50
3206 3222 6.503524 TGCTTTGTTTTCTGAACATAACCTC 58.496 36.000 0.00 0.00 0.00 3.85
3207 3223 6.321181 TGCTTTGTTTTCTGAACATAACCTCT 59.679 34.615 0.00 0.00 0.00 3.69
3208 3224 7.500892 TGCTTTGTTTTCTGAACATAACCTCTA 59.499 33.333 0.00 0.00 0.00 2.43
3209 3225 8.349983 GCTTTGTTTTCTGAACATAACCTCTAA 58.650 33.333 0.00 0.00 0.00 2.10
3216 3232 8.918202 TTCTGAACATAACCTCTAATTTGTGT 57.082 30.769 0.00 0.00 0.00 3.72
3217 3233 8.918202 TCTGAACATAACCTCTAATTTGTGTT 57.082 30.769 0.00 0.00 39.06 3.32
3218 3234 9.349713 TCTGAACATAACCTCTAATTTGTGTTT 57.650 29.630 0.00 0.00 37.23 2.83
3219 3235 9.398170 CTGAACATAACCTCTAATTTGTGTTTG 57.602 33.333 0.00 0.00 37.23 2.93
3220 3236 8.908903 TGAACATAACCTCTAATTTGTGTTTGT 58.091 29.630 0.00 0.00 37.23 2.83
3221 3237 9.744468 GAACATAACCTCTAATTTGTGTTTGTT 57.256 29.630 15.13 15.13 37.23 2.83
3223 3239 9.744468 ACATAACCTCTAATTTGTGTTTGTTTC 57.256 29.630 0.00 0.00 0.00 2.78
3224 3240 8.901748 CATAACCTCTAATTTGTGTTTGTTTCG 58.098 33.333 0.00 0.00 0.00 3.46
3225 3241 6.445357 ACCTCTAATTTGTGTTTGTTTCGT 57.555 33.333 0.00 0.00 0.00 3.85
3226 3242 7.556733 ACCTCTAATTTGTGTTTGTTTCGTA 57.443 32.000 0.00 0.00 0.00 3.43
3227 3243 7.987649 ACCTCTAATTTGTGTTTGTTTCGTAA 58.012 30.769 0.00 0.00 0.00 3.18
3228 3244 8.126700 ACCTCTAATTTGTGTTTGTTTCGTAAG 58.873 33.333 0.00 0.00 0.00 2.34
3229 3245 8.126700 CCTCTAATTTGTGTTTGTTTCGTAAGT 58.873 33.333 0.00 0.00 39.48 2.24
3241 3257 6.870971 TGTTTCGTAAGTTTAAGGCTTGAT 57.129 33.333 10.69 0.00 39.48 2.57
3248 3264 7.859377 TCGTAAGTTTAAGGCTTGATAGTATCG 59.141 37.037 10.69 6.39 39.48 2.92
3250 3266 5.298347 AGTTTAAGGCTTGATAGTATCGGC 58.702 41.667 10.69 15.35 0.00 5.54
3356 3372 5.356882 TGTAGCTTGCATTTGTAAGACAC 57.643 39.130 11.87 8.56 39.64 3.67
3362 3378 3.669536 TGCATTTGTAAGACACCATCGA 58.330 40.909 0.00 0.00 0.00 3.59
3366 3382 5.391950 GCATTTGTAAGACACCATCGAATGT 60.392 40.000 0.00 0.00 0.00 2.71
3471 3495 8.887717 GTCTCAAATCATAATCTTGCAGTAGTT 58.112 33.333 0.00 0.00 0.00 2.24
3472 3496 9.453572 TCTCAAATCATAATCTTGCAGTAGTTT 57.546 29.630 0.00 0.00 0.00 2.66
3530 3554 1.322637 CAGTGATGCGACTGTTGATCG 59.677 52.381 0.00 0.00 38.88 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 5.932619 AGCCTTATATGGAACCCAAAAAC 57.067 39.130 8.82 0.00 36.95 2.43
113 114 4.972568 TGACTAGCCTTATATGGAACCCAA 59.027 41.667 8.82 0.00 36.95 4.12
114 115 4.562767 TGACTAGCCTTATATGGAACCCA 58.437 43.478 8.82 0.00 38.19 4.51
115 116 5.763876 ATGACTAGCCTTATATGGAACCC 57.236 43.478 8.82 0.00 0.00 4.11
116 117 7.324178 CACTATGACTAGCCTTATATGGAACC 58.676 42.308 8.82 0.00 0.00 3.62
117 118 7.324178 CCACTATGACTAGCCTTATATGGAAC 58.676 42.308 8.82 0.00 0.00 3.62
118 119 6.440647 CCCACTATGACTAGCCTTATATGGAA 59.559 42.308 8.82 0.00 0.00 3.53
120 121 5.958380 TCCCACTATGACTAGCCTTATATGG 59.042 44.000 0.14 0.14 0.00 2.74
121 122 6.665680 ACTCCCACTATGACTAGCCTTATATG 59.334 42.308 0.00 0.00 0.00 1.78
123 124 6.215515 ACTCCCACTATGACTAGCCTTATA 57.784 41.667 0.00 0.00 0.00 0.98
124 125 5.081315 ACTCCCACTATGACTAGCCTTAT 57.919 43.478 0.00 0.00 0.00 1.73
125 126 4.537945 ACTCCCACTATGACTAGCCTTA 57.462 45.455 0.00 0.00 0.00 2.69
126 127 3.406512 ACTCCCACTATGACTAGCCTT 57.593 47.619 0.00 0.00 0.00 4.35
134 135 6.670617 ACTAGCTAAGTTACTCCCACTATGA 58.329 40.000 0.00 0.00 33.35 2.15
144 145 6.039047 TGCGCTATGTTACTAGCTAAGTTACT 59.961 38.462 9.73 0.00 41.61 2.24
154 155 5.340803 TCTTGAAGTGCGCTATGTTACTAG 58.659 41.667 9.73 0.00 0.00 2.57
241 253 0.457337 CATCTTGCCTTGGAAAGCGC 60.457 55.000 0.00 0.00 44.44 5.92
321 335 4.506354 ACACCCCCTAAGTTACTACCTTT 58.494 43.478 0.00 0.00 0.00 3.11
325 339 5.233083 ACAAACACCCCCTAAGTTACTAC 57.767 43.478 0.00 0.00 0.00 2.73
413 427 6.526056 AGTTTAGTCCCTAAAAAGTCCCTT 57.474 37.500 0.00 0.00 37.62 3.95
604 618 3.800736 AGAAGTCCCTAGTCCCTTCCTAT 59.199 47.826 8.21 0.00 35.10 2.57
625 639 4.757149 CCCTGTTTGTTTCCAGAGACTAAG 59.243 45.833 0.00 0.00 0.00 2.18
698 713 5.007682 GCCTGTTTGGTTCATAAGTCCTAA 58.992 41.667 0.00 0.00 38.35 2.69
708 723 1.777878 TCTAAGGGCCTGTTTGGTTCA 59.222 47.619 6.92 0.00 38.35 3.18
719 734 2.766828 ACATGACACTAGTCTAAGGGCC 59.233 50.000 0.00 0.00 45.20 5.80
720 735 5.793030 ATACATGACACTAGTCTAAGGGC 57.207 43.478 0.00 0.00 45.20 5.19
721 736 8.637196 TCATATACATGACACTAGTCTAAGGG 57.363 38.462 0.00 0.00 45.20 3.95
742 757 7.675195 TGGGGAGTAACTTAAACTAGTGTCATA 59.325 37.037 0.00 0.00 0.00 2.15
754 769 5.343715 TGGTCATAGTGGGGAGTAACTTAA 58.656 41.667 0.00 0.00 0.00 1.85
766 781 3.034635 ACTCTTAGGCTGGTCATAGTGG 58.965 50.000 0.00 0.00 0.00 4.00
767 782 3.701542 TGACTCTTAGGCTGGTCATAGTG 59.298 47.826 0.00 0.00 34.38 2.74
768 783 3.982516 TGACTCTTAGGCTGGTCATAGT 58.017 45.455 0.00 0.00 34.38 2.12
769 784 5.127845 TCTTTGACTCTTAGGCTGGTCATAG 59.872 44.000 16.98 16.98 38.29 2.23
770 785 5.023452 TCTTTGACTCTTAGGCTGGTCATA 58.977 41.667 0.00 1.67 38.29 2.15
791 806 6.976934 TCTTTTCAAAAACAATAGGCCTCT 57.023 33.333 9.68 0.00 0.00 3.69
801 816 4.627900 GGCCGAAACTTCTTTTCAAAAACA 59.372 37.500 0.00 0.00 43.54 2.83
806 821 2.379972 TGGGCCGAAACTTCTTTTCAA 58.620 42.857 0.00 0.00 43.54 2.69
945 960 1.958579 CATCTGAGAGCCTGAGAGAGG 59.041 57.143 0.00 0.00 46.13 3.69
1017 1032 2.579201 CGGAGGCGAGGAATGTGT 59.421 61.111 0.00 0.00 0.00 3.72
1061 1076 2.508586 GAAGTGGTGGTCTCGGAGGC 62.509 65.000 4.96 2.44 0.00 4.70
1152 1167 4.326227 TAGGGGTGCGGGGACTGT 62.326 66.667 0.00 0.00 36.83 3.55
1200 1215 2.048597 CCAGCAGCGTCCAACGTA 60.049 61.111 1.14 0.00 44.73 3.57
1485 1500 1.852157 TGGGGCCACACCATTCTCT 60.852 57.895 1.54 0.00 42.05 3.10
1575 1590 0.107312 CCTCCAGCATCAAGTCCAGG 60.107 60.000 0.00 0.00 0.00 4.45
1640 1655 0.036105 CATCCCAGCAGTGCAGTACA 60.036 55.000 19.20 0.00 0.00 2.90
1651 1666 1.245732 GCCTCATGAATCATCCCAGC 58.754 55.000 0.00 0.00 0.00 4.85
1809 1824 1.044611 TGATCGTATCCGGCATCCAA 58.955 50.000 0.00 0.00 33.95 3.53
1814 1829 1.957877 TGTATGTGATCGTATCCGGCA 59.042 47.619 0.00 0.00 33.95 5.69
1824 1839 5.359756 TCCATGTAAGTGCTGTATGTGATC 58.640 41.667 0.00 0.00 0.00 2.92
1848 1863 1.973515 CTACCAGATCTGCATAGCCCA 59.026 52.381 17.76 0.00 0.00 5.36
1967 1982 3.730761 CAGCCCACGCAGTTGAGC 61.731 66.667 0.00 0.00 41.61 4.26
1973 1988 3.434319 ATTTCGCAGCCCACGCAG 61.434 61.111 0.00 0.00 37.52 5.18
1992 2007 0.954449 CTGCACTGCACTCCAGAAGG 60.954 60.000 0.00 0.00 44.64 3.46
2078 2093 1.336240 GCTTGACAACAGCCAACCATC 60.336 52.381 0.00 0.00 0.00 3.51
2196 2211 0.529378 CACTCCCCATCAAGCAAAGC 59.471 55.000 0.00 0.00 0.00 3.51
2439 2454 8.404000 CCTCGTACAATACTTGTAACTACAGAT 58.596 37.037 1.53 0.00 46.72 2.90
2520 2535 2.446435 TCTATTGCAAAGCCTTGTCCC 58.554 47.619 1.71 0.00 34.79 4.46
2548 2563 4.045104 GCAATGATCACTACTCGGTACAG 58.955 47.826 0.00 0.00 0.00 2.74
2752 2768 2.017049 CCTTCAGCAACCGGATAAAGG 58.983 52.381 9.46 8.36 0.00 3.11
2753 2769 2.017049 CCCTTCAGCAACCGGATAAAG 58.983 52.381 9.46 2.66 0.00 1.85
2754 2770 1.340600 CCCCTTCAGCAACCGGATAAA 60.341 52.381 9.46 0.00 0.00 1.40
2755 2771 0.254747 CCCCTTCAGCAACCGGATAA 59.745 55.000 9.46 0.00 0.00 1.75
2756 2772 0.619255 TCCCCTTCAGCAACCGGATA 60.619 55.000 9.46 0.00 0.00 2.59
2757 2773 1.915078 CTCCCCTTCAGCAACCGGAT 61.915 60.000 9.46 0.00 0.00 4.18
2758 2774 2.528127 TCCCCTTCAGCAACCGGA 60.528 61.111 9.46 0.00 0.00 5.14
2759 2775 2.045926 CTCCCCTTCAGCAACCGG 60.046 66.667 0.00 0.00 0.00 5.28
2760 2776 2.747855 GCTCCCCTTCAGCAACCG 60.748 66.667 0.00 0.00 36.82 4.44
2761 2777 2.361737 GGCTCCCCTTCAGCAACC 60.362 66.667 0.00 0.00 38.77 3.77
2762 2778 2.759795 AGGCTCCCCTTCAGCAAC 59.240 61.111 0.00 0.00 38.74 4.17
2774 2790 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2775 2791 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2776 2792 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2777 2793 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2778 2794 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2779 2795 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2780 2796 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2781 2797 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2785 2801 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2786 2802 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2787 2803 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2788 2804 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2789 2805 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2790 2806 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2791 2807 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2792 2808 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2793 2809 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2794 2810 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2795 2811 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2796 2812 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2797 2813 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2798 2814 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2799 2815 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2800 2816 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2812 2828 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2813 2829 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2814 2830 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2815 2831 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2816 2832 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2817 2833 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2818 2834 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2819 2835 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2820 2836 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2821 2837 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2822 2838 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2823 2839 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2824 2840 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2825 2841 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2826 2842 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2827 2843 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2828 2844 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2829 2845 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2830 2846 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2831 2847 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2832 2848 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2833 2849 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2845 2861 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2846 2862 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2847 2863 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2848 2864 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2849 2865 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2850 2866 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2851 2867 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2852 2868 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2853 2869 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2854 2870 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2855 2871 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2856 2872 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2857 2873 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2858 2874 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2859 2875 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2860 2876 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2861 2877 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2862 2878 3.318557 AGGTCTATAGTACGCAGCCTTTC 59.681 47.826 0.00 0.00 0.00 2.62
2863 2879 3.297736 AGGTCTATAGTACGCAGCCTTT 58.702 45.455 0.00 0.00 0.00 3.11
2864 2880 2.946785 AGGTCTATAGTACGCAGCCTT 58.053 47.619 0.00 0.00 0.00 4.35
2865 2881 2.660670 AGGTCTATAGTACGCAGCCT 57.339 50.000 0.00 0.00 0.00 4.58
2866 2882 4.277921 ACTTTAGGTCTATAGTACGCAGCC 59.722 45.833 0.00 0.00 0.00 4.85
2867 2883 5.213675 CACTTTAGGTCTATAGTACGCAGC 58.786 45.833 0.00 0.00 0.00 5.25
2868 2884 5.298777 ACCACTTTAGGTCTATAGTACGCAG 59.701 44.000 0.00 0.00 37.28 5.18
2869 2885 5.195940 ACCACTTTAGGTCTATAGTACGCA 58.804 41.667 0.00 0.00 37.28 5.24
2870 2886 5.764487 ACCACTTTAGGTCTATAGTACGC 57.236 43.478 0.00 0.00 37.28 4.42
2881 2897 0.178912 AGGGTCCGACCACTTTAGGT 60.179 55.000 19.43 0.00 46.82 3.08
2882 2898 0.981943 AAGGGTCCGACCACTTTAGG 59.018 55.000 19.43 0.00 41.02 2.69
2883 2899 1.066358 GGAAGGGTCCGACCACTTTAG 60.066 57.143 19.43 0.00 41.02 1.85
2884 2900 0.978907 GGAAGGGTCCGACCACTTTA 59.021 55.000 19.43 0.00 41.02 1.85
2885 2901 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2886 2902 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2887 2903 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2888 2904 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2889 2905 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2890 2906 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2891 2907 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2892 2908 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2893 2909 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2894 2910 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2895 2911 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2896 2912 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2897 2913 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2898 2914 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2899 2915 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2911 2927 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2914 2930 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2915 2931 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2916 2932 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2917 2933 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2923 2939 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2924 2940 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2925 2941 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2926 2942 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2927 2943 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2939 2955 0.815095 CAACCGGATAAAGGGGCAAC 59.185 55.000 9.46 0.00 0.00 4.17
2940 2956 0.968393 GCAACCGGATAAAGGGGCAA 60.968 55.000 9.46 0.00 34.63 4.52
2941 2957 1.379309 GCAACCGGATAAAGGGGCA 60.379 57.895 9.46 0.00 34.63 5.36
2942 2958 1.076995 AGCAACCGGATAAAGGGGC 60.077 57.895 9.46 0.00 34.68 5.80
2943 2959 0.034477 ACAGCAACCGGATAAAGGGG 60.034 55.000 9.46 0.00 0.00 4.79
2944 2960 1.834188 AACAGCAACCGGATAAAGGG 58.166 50.000 9.46 0.00 0.00 3.95
2950 2966 2.094752 GCAACATAAACAGCAACCGGAT 60.095 45.455 9.46 0.00 0.00 4.18
2954 2970 4.119136 ACAAAGCAACATAAACAGCAACC 58.881 39.130 0.00 0.00 0.00 3.77
3023 3039 9.224267 GCTGAGCATTCTTTCCAATATATAAGA 57.776 33.333 0.00 0.00 0.00 2.10
3024 3040 9.228949 AGCTGAGCATTCTTTCCAATATATAAG 57.771 33.333 7.39 0.00 0.00 1.73
3025 3041 9.578576 AAGCTGAGCATTCTTTCCAATATATAA 57.421 29.630 7.39 0.00 0.00 0.98
3026 3042 9.006839 CAAGCTGAGCATTCTTTCCAATATATA 57.993 33.333 7.39 0.00 0.00 0.86
3027 3043 7.722728 TCAAGCTGAGCATTCTTTCCAATATAT 59.277 33.333 7.39 0.00 0.00 0.86
3028 3044 7.056006 TCAAGCTGAGCATTCTTTCCAATATA 58.944 34.615 7.39 0.00 0.00 0.86
3029 3045 5.889853 TCAAGCTGAGCATTCTTTCCAATAT 59.110 36.000 7.39 0.00 0.00 1.28
3030 3046 5.255687 TCAAGCTGAGCATTCTTTCCAATA 58.744 37.500 7.39 0.00 0.00 1.90
3031 3047 4.084287 TCAAGCTGAGCATTCTTTCCAAT 58.916 39.130 7.39 0.00 0.00 3.16
3032 3048 3.489355 TCAAGCTGAGCATTCTTTCCAA 58.511 40.909 7.39 0.00 0.00 3.53
3033 3049 3.079578 CTCAAGCTGAGCATTCTTTCCA 58.920 45.455 7.39 0.00 37.72 3.53
3034 3050 3.341823 TCTCAAGCTGAGCATTCTTTCC 58.658 45.455 7.39 0.00 43.95 3.13
3035 3051 4.634883 TCATCTCAAGCTGAGCATTCTTTC 59.365 41.667 7.39 0.00 43.95 2.62
3036 3052 4.586884 TCATCTCAAGCTGAGCATTCTTT 58.413 39.130 7.39 0.00 43.95 2.52
3037 3053 4.217836 TCATCTCAAGCTGAGCATTCTT 57.782 40.909 7.39 0.00 43.95 2.52
3038 3054 3.908643 TCATCTCAAGCTGAGCATTCT 57.091 42.857 7.39 0.00 43.95 2.40
3039 3055 5.502153 AAATCATCTCAAGCTGAGCATTC 57.498 39.130 7.39 0.00 43.95 2.67
3040 3056 5.916661 AAAATCATCTCAAGCTGAGCATT 57.083 34.783 7.39 0.00 43.95 3.56
3041 3057 5.652891 AGAAAAATCATCTCAAGCTGAGCAT 59.347 36.000 7.39 0.00 43.95 3.79
3042 3058 5.008331 AGAAAAATCATCTCAAGCTGAGCA 58.992 37.500 7.39 0.00 43.95 4.26
3043 3059 5.448904 GGAGAAAAATCATCTCAAGCTGAGC 60.449 44.000 0.00 0.00 43.95 4.26
3044 3060 5.646793 TGGAGAAAAATCATCTCAAGCTGAG 59.353 40.000 5.96 6.79 45.59 3.35
3045 3061 5.563592 TGGAGAAAAATCATCTCAAGCTGA 58.436 37.500 5.96 0.00 44.13 4.26
3046 3062 5.892160 TGGAGAAAAATCATCTCAAGCTG 57.108 39.130 5.96 0.00 44.13 4.24
3047 3063 5.771666 TGTTGGAGAAAAATCATCTCAAGCT 59.228 36.000 5.96 0.00 44.13 3.74
3048 3064 6.017400 TGTTGGAGAAAAATCATCTCAAGC 57.983 37.500 5.96 0.00 44.13 4.01
3051 3067 9.912634 GTTAATTGTTGGAGAAAAATCATCTCA 57.087 29.630 5.96 0.00 44.13 3.27
3052 3068 9.912634 TGTTAATTGTTGGAGAAAAATCATCTC 57.087 29.630 0.00 0.00 42.09 2.75
3053 3069 9.696917 GTGTTAATTGTTGGAGAAAAATCATCT 57.303 29.630 0.00 0.00 0.00 2.90
3054 3070 8.638565 CGTGTTAATTGTTGGAGAAAAATCATC 58.361 33.333 0.00 0.00 0.00 2.92
3055 3071 8.356657 TCGTGTTAATTGTTGGAGAAAAATCAT 58.643 29.630 0.00 0.00 0.00 2.45
3056 3072 7.708051 TCGTGTTAATTGTTGGAGAAAAATCA 58.292 30.769 0.00 0.00 0.00 2.57
3057 3073 8.568732 TTCGTGTTAATTGTTGGAGAAAAATC 57.431 30.769 0.00 0.00 0.00 2.17
3058 3074 8.934507 TTTCGTGTTAATTGTTGGAGAAAAAT 57.065 26.923 0.00 0.00 0.00 1.82
3059 3075 8.244802 TCTTTCGTGTTAATTGTTGGAGAAAAA 58.755 29.630 0.00 0.00 0.00 1.94
3060 3076 7.763356 TCTTTCGTGTTAATTGTTGGAGAAAA 58.237 30.769 0.00 0.00 0.00 2.29
3061 3077 7.323049 TCTTTCGTGTTAATTGTTGGAGAAA 57.677 32.000 0.00 0.00 0.00 2.52
3062 3078 6.928979 TCTTTCGTGTTAATTGTTGGAGAA 57.071 33.333 0.00 0.00 0.00 2.87
3063 3079 6.928979 TTCTTTCGTGTTAATTGTTGGAGA 57.071 33.333 0.00 0.00 0.00 3.71
3064 3080 8.574196 AATTTCTTTCGTGTTAATTGTTGGAG 57.426 30.769 0.00 0.00 0.00 3.86
3065 3081 7.650104 GGAATTTCTTTCGTGTTAATTGTTGGA 59.350 33.333 0.00 0.00 34.98 3.53
3066 3082 7.436673 TGGAATTTCTTTCGTGTTAATTGTTGG 59.563 33.333 0.00 0.00 34.98 3.77
3067 3083 8.346476 TGGAATTTCTTTCGTGTTAATTGTTG 57.654 30.769 0.00 0.00 34.98 3.33
3068 3084 8.194769 ACTGGAATTTCTTTCGTGTTAATTGTT 58.805 29.630 0.00 0.00 34.98 2.83
3069 3085 7.712797 ACTGGAATTTCTTTCGTGTTAATTGT 58.287 30.769 0.00 0.00 34.98 2.71
3070 3086 8.574196 AACTGGAATTTCTTTCGTGTTAATTG 57.426 30.769 0.00 0.00 34.98 2.32
3071 3087 8.630037 AGAACTGGAATTTCTTTCGTGTTAATT 58.370 29.630 0.00 0.00 33.53 1.40
3072 3088 8.076178 CAGAACTGGAATTTCTTTCGTGTTAAT 58.924 33.333 0.00 0.00 33.53 1.40
3073 3089 7.066525 ACAGAACTGGAATTTCTTTCGTGTTAA 59.933 33.333 6.76 0.00 33.53 2.01
3074 3090 6.540914 ACAGAACTGGAATTTCTTTCGTGTTA 59.459 34.615 6.76 0.00 33.53 2.41
3075 3091 5.357032 ACAGAACTGGAATTTCTTTCGTGTT 59.643 36.000 6.76 0.00 34.97 3.32
3076 3092 4.881850 ACAGAACTGGAATTTCTTTCGTGT 59.118 37.500 6.76 2.52 34.98 4.49
3077 3093 5.424121 ACAGAACTGGAATTTCTTTCGTG 57.576 39.130 6.76 2.05 34.98 4.35
3078 3094 5.179555 GCTACAGAACTGGAATTTCTTTCGT 59.820 40.000 6.76 3.76 34.98 3.85
3079 3095 5.409826 AGCTACAGAACTGGAATTTCTTTCG 59.590 40.000 6.76 0.00 34.98 3.46
3080 3096 6.809630 AGCTACAGAACTGGAATTTCTTTC 57.190 37.500 6.76 0.00 30.56 2.62
3083 3099 9.553064 CAATATAGCTACAGAACTGGAATTTCT 57.447 33.333 0.00 0.00 33.38 2.52
3084 3100 9.331282 ACAATATAGCTACAGAACTGGAATTTC 57.669 33.333 0.00 0.00 34.19 2.17
3086 3102 9.765795 GTACAATATAGCTACAGAACTGGAATT 57.234 33.333 0.00 0.00 34.19 2.17
3087 3103 9.148879 AGTACAATATAGCTACAGAACTGGAAT 57.851 33.333 0.00 0.00 34.19 3.01
3088 3104 8.534954 AGTACAATATAGCTACAGAACTGGAA 57.465 34.615 0.00 0.00 34.19 3.53
3089 3105 8.534954 AAGTACAATATAGCTACAGAACTGGA 57.465 34.615 0.00 0.00 34.19 3.86
3090 3106 9.250624 GAAAGTACAATATAGCTACAGAACTGG 57.749 37.037 0.00 0.00 34.19 4.00
3091 3107 9.250624 GGAAAGTACAATATAGCTACAGAACTG 57.749 37.037 0.00 0.00 0.00 3.16
3092 3108 8.978472 TGGAAAGTACAATATAGCTACAGAACT 58.022 33.333 0.00 0.00 0.00 3.01
3093 3109 9.595823 TTGGAAAGTACAATATAGCTACAGAAC 57.404 33.333 0.00 0.00 0.00 3.01
3094 3110 9.817809 CTTGGAAAGTACAATATAGCTACAGAA 57.182 33.333 0.00 0.00 39.70 3.02
3095 3111 9.197306 TCTTGGAAAGTACAATATAGCTACAGA 57.803 33.333 0.00 0.00 46.34 3.41
3096 3112 9.988815 ATCTTGGAAAGTACAATATAGCTACAG 57.011 33.333 0.00 0.00 46.34 2.74
3097 3113 9.982651 GATCTTGGAAAGTACAATATAGCTACA 57.017 33.333 0.00 0.00 46.34 2.74
3100 3116 9.153479 AGAGATCTTGGAAAGTACAATATAGCT 57.847 33.333 0.00 0.00 46.34 3.32
3144 3160 9.533831 AACTGGATAAAGGATGACACTAAAATT 57.466 29.630 0.00 0.00 0.00 1.82
3145 3161 8.960591 CAACTGGATAAAGGATGACACTAAAAT 58.039 33.333 0.00 0.00 0.00 1.82
3146 3162 7.094377 GCAACTGGATAAAGGATGACACTAAAA 60.094 37.037 0.00 0.00 0.00 1.52
3147 3163 6.374333 GCAACTGGATAAAGGATGACACTAAA 59.626 38.462 0.00 0.00 0.00 1.85
3148 3164 5.880332 GCAACTGGATAAAGGATGACACTAA 59.120 40.000 0.00 0.00 0.00 2.24
3149 3165 5.189736 AGCAACTGGATAAAGGATGACACTA 59.810 40.000 0.00 0.00 0.00 2.74
3150 3166 4.018960 AGCAACTGGATAAAGGATGACACT 60.019 41.667 0.00 0.00 0.00 3.55
3151 3167 4.095483 CAGCAACTGGATAAAGGATGACAC 59.905 45.833 0.00 0.00 0.00 3.67
3152 3168 4.263462 ACAGCAACTGGATAAAGGATGACA 60.263 41.667 0.00 0.00 35.51 3.58
3153 3169 4.265073 ACAGCAACTGGATAAAGGATGAC 58.735 43.478 0.00 0.00 35.51 3.06
3154 3170 4.574674 ACAGCAACTGGATAAAGGATGA 57.425 40.909 0.00 0.00 35.51 2.92
3155 3171 5.649782 AAACAGCAACTGGATAAAGGATG 57.350 39.130 0.00 0.00 35.51 3.51
3156 3172 6.891908 ACATAAACAGCAACTGGATAAAGGAT 59.108 34.615 0.00 0.00 35.51 3.24
3157 3173 6.245408 ACATAAACAGCAACTGGATAAAGGA 58.755 36.000 0.00 0.00 35.51 3.36
3158 3174 6.515272 ACATAAACAGCAACTGGATAAAGG 57.485 37.500 0.00 0.00 35.51 3.11
3159 3175 6.308766 GCAACATAAACAGCAACTGGATAAAG 59.691 38.462 0.00 0.00 35.51 1.85
3160 3176 6.015519 AGCAACATAAACAGCAACTGGATAAA 60.016 34.615 0.00 0.00 35.51 1.40
3161 3177 5.476599 AGCAACATAAACAGCAACTGGATAA 59.523 36.000 0.00 0.00 35.51 1.75
3162 3178 5.009631 AGCAACATAAACAGCAACTGGATA 58.990 37.500 0.00 0.00 35.51 2.59
3163 3179 3.828451 AGCAACATAAACAGCAACTGGAT 59.172 39.130 0.00 0.00 35.51 3.41
3164 3180 3.221771 AGCAACATAAACAGCAACTGGA 58.778 40.909 0.00 0.00 35.51 3.86
3165 3181 3.648339 AGCAACATAAACAGCAACTGG 57.352 42.857 0.00 0.00 35.51 4.00
3166 3182 4.805192 ACAAAGCAACATAAACAGCAACTG 59.195 37.500 0.00 0.00 37.52 3.16
3167 3183 5.009854 ACAAAGCAACATAAACAGCAACT 57.990 34.783 0.00 0.00 0.00 3.16
3168 3184 5.717038 AACAAAGCAACATAAACAGCAAC 57.283 34.783 0.00 0.00 0.00 4.17
3169 3185 6.593382 AGAAAACAAAGCAACATAAACAGCAA 59.407 30.769 0.00 0.00 0.00 3.91
3170 3186 6.035866 CAGAAAACAAAGCAACATAAACAGCA 59.964 34.615 0.00 0.00 0.00 4.41
3171 3187 6.255453 TCAGAAAACAAAGCAACATAAACAGC 59.745 34.615 0.00 0.00 0.00 4.40
3172 3188 7.754069 TCAGAAAACAAAGCAACATAAACAG 57.246 32.000 0.00 0.00 0.00 3.16
3173 3189 7.600375 TGTTCAGAAAACAAAGCAACATAAACA 59.400 29.630 0.00 0.00 0.00 2.83
3174 3190 7.958674 TGTTCAGAAAACAAAGCAACATAAAC 58.041 30.769 0.00 0.00 0.00 2.01
3175 3191 8.715191 ATGTTCAGAAAACAAAGCAACATAAA 57.285 26.923 0.00 0.00 32.54 1.40
3176 3192 9.809096 TTATGTTCAGAAAACAAAGCAACATAA 57.191 25.926 9.27 9.27 40.41 1.90
3177 3193 9.243637 GTTATGTTCAGAAAACAAAGCAACATA 57.756 29.630 0.00 0.00 35.27 2.29
3178 3194 7.224557 GGTTATGTTCAGAAAACAAAGCAACAT 59.775 33.333 0.00 0.00 36.97 2.71
3179 3195 6.533367 GGTTATGTTCAGAAAACAAAGCAACA 59.467 34.615 0.00 0.00 33.42 3.33
3180 3196 6.756542 AGGTTATGTTCAGAAAACAAAGCAAC 59.243 34.615 12.71 7.79 33.42 4.17
3181 3197 6.872920 AGGTTATGTTCAGAAAACAAAGCAA 58.127 32.000 12.71 0.00 33.42 3.91
3182 3198 6.321181 AGAGGTTATGTTCAGAAAACAAAGCA 59.679 34.615 12.71 0.00 33.42 3.91
3183 3199 6.739112 AGAGGTTATGTTCAGAAAACAAAGC 58.261 36.000 0.00 2.15 33.42 3.51
3190 3206 9.349713 ACACAAATTAGAGGTTATGTTCAGAAA 57.650 29.630 0.00 0.00 0.00 2.52
3191 3207 8.918202 ACACAAATTAGAGGTTATGTTCAGAA 57.082 30.769 0.00 0.00 0.00 3.02
3192 3208 8.918202 AACACAAATTAGAGGTTATGTTCAGA 57.082 30.769 0.00 0.00 0.00 3.27
3193 3209 9.398170 CAAACACAAATTAGAGGTTATGTTCAG 57.602 33.333 0.00 0.00 0.00 3.02
3194 3210 8.908903 ACAAACACAAATTAGAGGTTATGTTCA 58.091 29.630 0.00 0.00 0.00 3.18
3195 3211 9.744468 AACAAACACAAATTAGAGGTTATGTTC 57.256 29.630 0.00 0.00 0.00 3.18
3197 3213 9.744468 GAAACAAACACAAATTAGAGGTTATGT 57.256 29.630 0.00 0.00 0.00 2.29
3198 3214 8.901748 CGAAACAAACACAAATTAGAGGTTATG 58.098 33.333 0.00 0.00 0.00 1.90
3199 3215 8.626526 ACGAAACAAACACAAATTAGAGGTTAT 58.373 29.630 0.00 0.00 0.00 1.89
3200 3216 7.987649 ACGAAACAAACACAAATTAGAGGTTA 58.012 30.769 0.00 0.00 0.00 2.85
3201 3217 6.859017 ACGAAACAAACACAAATTAGAGGTT 58.141 32.000 0.00 0.00 0.00 3.50
3202 3218 6.445357 ACGAAACAAACACAAATTAGAGGT 57.555 33.333 0.00 0.00 0.00 3.85
3203 3219 8.126700 ACTTACGAAACAAACACAAATTAGAGG 58.873 33.333 0.00 0.00 0.00 3.69
3204 3220 9.498307 AACTTACGAAACAAACACAAATTAGAG 57.502 29.630 0.00 0.00 0.00 2.43
3205 3221 9.843334 AAACTTACGAAACAAACACAAATTAGA 57.157 25.926 0.00 0.00 0.00 2.10
3209 3225 9.078753 CCTTAAACTTACGAAACAAACACAAAT 57.921 29.630 0.00 0.00 0.00 2.32
3210 3226 7.062022 GCCTTAAACTTACGAAACAAACACAAA 59.938 33.333 0.00 0.00 0.00 2.83
3211 3227 6.527372 GCCTTAAACTTACGAAACAAACACAA 59.473 34.615 0.00 0.00 0.00 3.33
3212 3228 6.028987 GCCTTAAACTTACGAAACAAACACA 58.971 36.000 0.00 0.00 0.00 3.72
3213 3229 6.260377 AGCCTTAAACTTACGAAACAAACAC 58.740 36.000 0.00 0.00 0.00 3.32
3214 3230 6.439675 AGCCTTAAACTTACGAAACAAACA 57.560 33.333 0.00 0.00 0.00 2.83
3215 3231 6.968335 TCAAGCCTTAAACTTACGAAACAAAC 59.032 34.615 0.00 0.00 0.00 2.93
3216 3232 7.086230 TCAAGCCTTAAACTTACGAAACAAA 57.914 32.000 0.00 0.00 0.00 2.83
3217 3233 6.680874 TCAAGCCTTAAACTTACGAAACAA 57.319 33.333 0.00 0.00 0.00 2.83
3218 3234 6.870971 ATCAAGCCTTAAACTTACGAAACA 57.129 33.333 0.00 0.00 0.00 2.83
3219 3235 8.026341 ACTATCAAGCCTTAAACTTACGAAAC 57.974 34.615 0.00 0.00 0.00 2.78
3220 3236 9.880157 ATACTATCAAGCCTTAAACTTACGAAA 57.120 29.630 0.00 0.00 0.00 3.46
3221 3237 9.525409 GATACTATCAAGCCTTAAACTTACGAA 57.475 33.333 0.00 0.00 0.00 3.85
3222 3238 7.859377 CGATACTATCAAGCCTTAAACTTACGA 59.141 37.037 0.00 0.00 0.00 3.43
3223 3239 7.114529 CCGATACTATCAAGCCTTAAACTTACG 59.885 40.741 0.00 0.00 0.00 3.18
3224 3240 7.095732 GCCGATACTATCAAGCCTTAAACTTAC 60.096 40.741 0.00 0.00 0.00 2.34
3225 3241 6.927381 GCCGATACTATCAAGCCTTAAACTTA 59.073 38.462 0.00 0.00 0.00 2.24
3226 3242 5.758784 GCCGATACTATCAAGCCTTAAACTT 59.241 40.000 0.00 0.00 0.00 2.66
3227 3243 5.163343 TGCCGATACTATCAAGCCTTAAACT 60.163 40.000 5.88 0.00 0.00 2.66
3228 3244 5.054477 TGCCGATACTATCAAGCCTTAAAC 58.946 41.667 5.88 0.00 0.00 2.01
3229 3245 5.069914 TCTGCCGATACTATCAAGCCTTAAA 59.930 40.000 5.88 0.00 0.00 1.52
3241 3257 4.705507 AGTTCAGAACTTCTGCCGATACTA 59.294 41.667 10.27 0.00 43.95 1.82
3248 3264 2.161211 GCATCAGTTCAGAACTTCTGCC 59.839 50.000 24.46 13.57 43.95 4.85
3250 3266 3.188048 GGTGCATCAGTTCAGAACTTCTG 59.812 47.826 13.53 13.84 45.59 3.02
3263 3279 1.259142 TGGGCAAATGGGTGCATCAG 61.259 55.000 0.00 0.00 46.81 2.90
3356 3372 9.755804 ATATTATGATACTAGCACATTCGATGG 57.244 33.333 0.00 0.00 33.60 3.51
3446 3470 9.453572 AAACTACTGCAAGATTATGATTTGAGA 57.546 29.630 0.00 0.00 37.43 3.27
3530 3554 8.926710 GGATGTAGCAGAATGTACAATATACAC 58.073 37.037 0.00 0.00 36.63 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.