Multiple sequence alignment - TraesCS1B01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G257000 chr1B 100.000 3687 0 0 1 3687 452570751 452574437 0.000000e+00 6809.0
1 TraesCS1B01G257000 chr1B 95.312 64 2 1 834 897 218620163 218620101 2.340000e-17 100.0
2 TraesCS1B01G257000 chr1B 92.424 66 3 2 834 897 190887818 190887753 3.920000e-15 93.5
3 TraesCS1B01G257000 chr1B 91.045 67 6 0 834 900 509014845 509014779 1.410000e-14 91.6
4 TraesCS1B01G257000 chr1B 100.000 46 0 0 455 500 452571083 452571128 6.560000e-13 86.1
5 TraesCS1B01G257000 chr1B 100.000 46 0 0 333 378 452571205 452571250 6.560000e-13 86.1
6 TraesCS1B01G257000 chr1D 94.297 1964 59 17 889 2820 337217082 337219024 0.000000e+00 2957.0
7 TraesCS1B01G257000 chr1D 96.095 845 29 4 2842 3682 337219079 337219923 0.000000e+00 1375.0
8 TraesCS1B01G257000 chr1D 96.111 180 7 0 212 391 337216548 337216727 1.000000e-75 294.0
9 TraesCS1B01G257000 chr1D 92.233 206 5 4 627 832 337216890 337217084 7.800000e-72 281.0
10 TraesCS1B01G257000 chr1D 87.129 101 7 4 455 550 337216669 337216768 3.890000e-20 110.0
11 TraesCS1B01G257000 chr1D 92.308 65 3 2 834 897 70566279 70566342 1.410000e-14 91.6
12 TraesCS1B01G257000 chr1D 100.000 40 0 0 173 212 337216481 337216520 1.420000e-09 75.0
13 TraesCS1B01G257000 chr1D 97.059 34 1 0 101 134 12029556 12029523 1.430000e-04 58.4
14 TraesCS1B01G257000 chr1D 97.059 34 1 0 101 134 12159900 12159867 1.430000e-04 58.4
15 TraesCS1B01G257000 chr1A 94.381 1940 64 12 893 2820 436421106 436423012 0.000000e+00 2937.0
16 TraesCS1B01G257000 chr1A 95.379 844 27 5 2854 3687 436423090 436423931 0.000000e+00 1332.0
17 TraesCS1B01G257000 chr1A 91.304 230 9 7 608 832 436420720 436420943 1.660000e-78 303.0
18 TraesCS1B01G257000 chr1A 91.176 68 4 2 831 897 31026209 31026275 1.410000e-14 91.6
19 TraesCS1B01G257000 chr7B 83.073 898 123 20 1032 1922 704664251 704663376 0.000000e+00 789.0
20 TraesCS1B01G257000 chr7B 84.272 604 72 17 2017 2614 704663321 704662735 5.340000e-158 568.0
21 TraesCS1B01G257000 chr7B 76.448 777 140 31 1102 1859 682283728 682282976 7.470000e-102 381.0
22 TraesCS1B01G257000 chr7B 94.595 37 2 0 107 143 706126367 706126331 1.430000e-04 58.4
23 TraesCS1B01G257000 chr7A 82.854 904 124 19 1027 1922 705418630 705417750 0.000000e+00 782.0
24 TraesCS1B01G257000 chr7A 83.553 608 75 17 2014 2614 705417693 705417104 2.500000e-151 545.0
25 TraesCS1B01G257000 chr7A 75.157 636 111 26 2019 2615 705679242 705679869 4.730000e-64 255.0
26 TraesCS1B01G257000 chr7D 82.020 901 135 17 1028 1922 613694284 613693405 0.000000e+00 741.0
27 TraesCS1B01G257000 chr7D 84.020 607 74 15 2014 2614 613693352 613692763 2.490000e-156 562.0
28 TraesCS1B01G257000 chr7D 81.321 439 73 8 2183 2614 613765865 613765429 7.580000e-92 348.0
29 TraesCS1B01G257000 chr7D 97.059 34 1 0 107 140 587384910 587384877 1.430000e-04 58.4
30 TraesCS1B01G257000 chr6A 78.365 624 112 17 1102 1719 205114751 205115357 2.080000e-102 383.0
31 TraesCS1B01G257000 chr6A 96.226 53 2 0 551 603 566730868 566730816 1.820000e-13 87.9
32 TraesCS1B01G257000 chr6A 84.810 79 7 3 107 181 182310556 182310633 1.420000e-09 75.0
33 TraesCS1B01G257000 chr6A 94.872 39 2 0 102 140 27763925 27763887 1.110000e-05 62.1
34 TraesCS1B01G257000 chr6D 77.778 540 97 18 2040 2567 97520597 97520069 9.940000e-81 311.0
35 TraesCS1B01G257000 chr6D 92.424 66 3 2 834 897 38435490 38435555 3.920000e-15 93.5
36 TraesCS1B01G257000 chr6D 92.424 66 3 2 834 897 38448754 38448819 3.920000e-15 93.5
37 TraesCS1B01G257000 chr6D 94.643 56 1 2 550 604 270313084 270313138 6.560000e-13 86.1
38 TraesCS1B01G257000 chr6B 76.577 555 88 29 2040 2567 181836860 181836321 2.180000e-67 267.0
39 TraesCS1B01G257000 chr6B 75.318 628 114 24 1102 1725 255211360 255210770 2.820000e-66 263.0
40 TraesCS1B01G257000 chr6B 89.474 76 5 2 107 180 710003201 710003127 3.920000e-15 93.5
41 TraesCS1B01G257000 chr6B 90.278 72 3 3 834 903 632435083 632435014 1.410000e-14 91.6
42 TraesCS1B01G257000 chr6B 92.308 39 2 1 107 144 59024133 59024095 2.000000e-03 54.7
43 TraesCS1B01G257000 chr5A 76.471 510 104 14 2034 2532 520208740 520208236 2.820000e-66 263.0
44 TraesCS1B01G257000 chr5A 80.723 166 22 3 227 391 657191784 657191628 1.800000e-23 121.0
45 TraesCS1B01G257000 chr5A 84.685 111 12 4 3 111 657191960 657191853 5.040000e-19 106.0
46 TraesCS1B01G257000 chr5B 75.639 509 110 12 2034 2532 491083183 491082679 1.320000e-59 241.0
47 TraesCS1B01G257000 chr5B 74.162 507 109 16 1109 1610 491084112 491083623 1.350000e-44 191.0
48 TraesCS1B01G257000 chr5B 84.685 111 12 4 3 111 666188379 666188272 5.040000e-19 106.0
49 TraesCS1B01G257000 chr5B 90.278 72 7 0 320 391 666186067 666185996 1.090000e-15 95.3
50 TraesCS1B01G257000 chr5B 93.548 62 1 2 550 611 707935167 707935109 5.070000e-14 89.8
51 TraesCS1B01G257000 chr5B 82.075 106 11 6 452 550 666186058 666185954 2.360000e-12 84.2
52 TraesCS1B01G257000 chr5D 86.792 106 10 3 8 111 528964705 528964602 8.370000e-22 115.0
53 TraesCS1B01G257000 chr5D 92.308 65 3 2 834 897 491718582 491718645 1.410000e-14 91.6
54 TraesCS1B01G257000 chr5D 96.296 54 2 0 547 600 394101581 394101634 5.070000e-14 89.8
55 TraesCS1B01G257000 chr3D 96.491 57 0 2 550 604 355714650 355714594 3.920000e-15 93.5
56 TraesCS1B01G257000 chr3D 97.059 34 1 0 107 140 463184422 463184389 1.430000e-04 58.4
57 TraesCS1B01G257000 chr2D 100.000 49 0 0 550 598 601207503 601207551 1.410000e-14 91.6
58 TraesCS1B01G257000 chr2D 96.296 54 2 0 550 603 429269396 429269343 5.070000e-14 89.8
59 TraesCS1B01G257000 chr2D 93.443 61 2 2 549 609 447496991 447497049 5.070000e-14 89.8
60 TraesCS1B01G257000 chr2D 96.296 54 2 0 550 603 647902328 647902381 5.070000e-14 89.8
61 TraesCS1B01G257000 chr3B 94.737 38 2 0 140 177 355585673 355585636 3.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G257000 chr1B 452570751 452574437 3686 False 2327.066667 6809 100.000000 1 3687 3 chr1B.!!$F1 3686
1 TraesCS1B01G257000 chr1D 337216481 337219923 3442 False 848.666667 2957 94.310833 173 3682 6 chr1D.!!$F2 3509
2 TraesCS1B01G257000 chr1A 436420720 436423931 3211 False 1524.000000 2937 93.688000 608 3687 3 chr1A.!!$F2 3079
3 TraesCS1B01G257000 chr7B 704662735 704664251 1516 True 678.500000 789 83.672500 1032 2614 2 chr7B.!!$R3 1582
4 TraesCS1B01G257000 chr7B 682282976 682283728 752 True 381.000000 381 76.448000 1102 1859 1 chr7B.!!$R1 757
5 TraesCS1B01G257000 chr7A 705417104 705418630 1526 True 663.500000 782 83.203500 1027 2614 2 chr7A.!!$R1 1587
6 TraesCS1B01G257000 chr7A 705679242 705679869 627 False 255.000000 255 75.157000 2019 2615 1 chr7A.!!$F1 596
7 TraesCS1B01G257000 chr7D 613692763 613694284 1521 True 651.500000 741 83.020000 1028 2614 2 chr7D.!!$R3 1586
8 TraesCS1B01G257000 chr6A 205114751 205115357 606 False 383.000000 383 78.365000 1102 1719 1 chr6A.!!$F2 617
9 TraesCS1B01G257000 chr6D 97520069 97520597 528 True 311.000000 311 77.778000 2040 2567 1 chr6D.!!$R1 527
10 TraesCS1B01G257000 chr6B 181836321 181836860 539 True 267.000000 267 76.577000 2040 2567 1 chr6B.!!$R2 527
11 TraesCS1B01G257000 chr6B 255210770 255211360 590 True 263.000000 263 75.318000 1102 1725 1 chr6B.!!$R3 623
12 TraesCS1B01G257000 chr5A 520208236 520208740 504 True 263.000000 263 76.471000 2034 2532 1 chr5A.!!$R1 498
13 TraesCS1B01G257000 chr5B 491082679 491084112 1433 True 216.000000 241 74.900500 1109 2532 2 chr5B.!!$R2 1423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.032678 CAGCGAAGAGTGACACCTGT 59.967 55.000 0.84 0.0 0.00 4.00 F
885 1003 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.000 0.00 0.0 40.81 3.66 F
1080 1365 0.896479 TCCACTTCATCCGGTCGTCA 60.896 55.000 0.00 0.0 0.00 4.35 F
1801 2114 1.627329 AGGAGCATCAAGAGAACAGCA 59.373 47.619 0.00 0.0 36.25 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1305 0.323725 GGGCAAGGAAGAGCATGGAA 60.324 55.000 0.00 0.00 0.00 3.53 R
1977 2308 0.368907 TTAGTCGCCGACGTACGTAC 59.631 55.000 22.87 15.37 41.18 3.67 R
2621 3048 1.078708 GCTTTGGCAATGGCATGCT 60.079 52.632 18.92 0.00 45.68 3.79 R
3443 3948 2.053627 GCCATCTCAAAAAGTGTTGCG 58.946 47.619 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.819667 CAGCGAAGAGTGACACCTG 58.180 57.895 0.84 0.00 0.00 4.00
19 20 0.032678 CAGCGAAGAGTGACACCTGT 59.967 55.000 0.84 0.00 0.00 4.00
20 21 1.269723 CAGCGAAGAGTGACACCTGTA 59.730 52.381 0.84 0.00 0.00 2.74
21 22 1.961394 AGCGAAGAGTGACACCTGTAA 59.039 47.619 0.84 0.00 0.00 2.41
22 23 2.364324 AGCGAAGAGTGACACCTGTAAA 59.636 45.455 0.84 0.00 0.00 2.01
23 24 3.006967 AGCGAAGAGTGACACCTGTAAAT 59.993 43.478 0.84 0.00 0.00 1.40
24 25 4.219944 AGCGAAGAGTGACACCTGTAAATA 59.780 41.667 0.84 0.00 0.00 1.40
25 26 4.927425 GCGAAGAGTGACACCTGTAAATAA 59.073 41.667 0.84 0.00 0.00 1.40
26 27 5.581085 GCGAAGAGTGACACCTGTAAATAAT 59.419 40.000 0.84 0.00 0.00 1.28
27 28 6.237861 GCGAAGAGTGACACCTGTAAATAATC 60.238 42.308 0.84 0.00 0.00 1.75
28 29 6.811665 CGAAGAGTGACACCTGTAAATAATCA 59.188 38.462 0.84 0.00 0.00 2.57
29 30 7.330946 CGAAGAGTGACACCTGTAAATAATCAA 59.669 37.037 0.84 0.00 0.00 2.57
30 31 8.918202 AAGAGTGACACCTGTAAATAATCAAA 57.082 30.769 0.84 0.00 0.00 2.69
31 32 9.520515 AAGAGTGACACCTGTAAATAATCAAAT 57.479 29.630 0.84 0.00 0.00 2.32
32 33 8.950210 AGAGTGACACCTGTAAATAATCAAATG 58.050 33.333 0.84 0.00 0.00 2.32
33 34 8.862325 AGTGACACCTGTAAATAATCAAATGA 57.138 30.769 0.84 0.00 0.00 2.57
34 35 9.466497 AGTGACACCTGTAAATAATCAAATGAT 57.534 29.630 0.84 0.00 36.07 2.45
49 50 8.635877 AATCAAATGATAGTTACTCGTGTCTC 57.364 34.615 0.00 0.00 33.73 3.36
50 51 7.153217 TCAAATGATAGTTACTCGTGTCTCA 57.847 36.000 0.00 0.00 0.00 3.27
51 52 7.599171 TCAAATGATAGTTACTCGTGTCTCAA 58.401 34.615 0.00 0.00 0.00 3.02
52 53 7.755373 TCAAATGATAGTTACTCGTGTCTCAAG 59.245 37.037 0.00 0.00 0.00 3.02
53 54 4.982999 TGATAGTTACTCGTGTCTCAAGC 58.017 43.478 0.00 0.00 0.00 4.01
54 55 2.726832 AGTTACTCGTGTCTCAAGCC 57.273 50.000 0.00 0.00 0.00 4.35
55 56 1.272769 AGTTACTCGTGTCTCAAGCCC 59.727 52.381 0.00 0.00 0.00 5.19
56 57 0.242825 TTACTCGTGTCTCAAGCCCG 59.757 55.000 0.00 0.00 0.00 6.13
57 58 1.592400 TACTCGTGTCTCAAGCCCGG 61.592 60.000 0.00 0.00 0.00 5.73
58 59 2.915659 TCGTGTCTCAAGCCCGGT 60.916 61.111 0.00 0.00 0.00 5.28
59 60 2.030562 CGTGTCTCAAGCCCGGTT 59.969 61.111 0.00 0.00 0.00 4.44
60 61 1.597027 CGTGTCTCAAGCCCGGTTT 60.597 57.895 0.00 0.00 0.00 3.27
61 62 0.320073 CGTGTCTCAAGCCCGGTTTA 60.320 55.000 0.00 0.00 0.00 2.01
62 63 1.674817 CGTGTCTCAAGCCCGGTTTAT 60.675 52.381 0.00 0.00 0.00 1.40
63 64 2.007608 GTGTCTCAAGCCCGGTTTATC 58.992 52.381 0.00 0.00 0.00 1.75
64 65 1.626321 TGTCTCAAGCCCGGTTTATCA 59.374 47.619 0.00 0.00 0.00 2.15
65 66 2.280628 GTCTCAAGCCCGGTTTATCAG 58.719 52.381 0.00 0.00 0.00 2.90
66 67 1.017387 CTCAAGCCCGGTTTATCAGC 58.983 55.000 0.00 0.00 0.00 4.26
67 68 0.742990 TCAAGCCCGGTTTATCAGCG 60.743 55.000 0.00 0.00 46.41 5.18
76 77 3.232213 GGTTTATCAGCGAGAGTGACA 57.768 47.619 0.00 0.00 0.00 3.58
77 78 2.924290 GGTTTATCAGCGAGAGTGACAC 59.076 50.000 0.00 0.00 0.00 3.67
78 79 3.575630 GTTTATCAGCGAGAGTGACACA 58.424 45.455 8.59 0.00 0.00 3.72
79 80 4.177026 GTTTATCAGCGAGAGTGACACAT 58.823 43.478 8.59 0.00 0.00 3.21
80 81 2.290531 ATCAGCGAGAGTGACACATG 57.709 50.000 8.59 0.00 0.00 3.21
81 82 0.961753 TCAGCGAGAGTGACACATGT 59.038 50.000 8.59 0.00 0.00 3.21
82 83 2.159382 TCAGCGAGAGTGACACATGTA 58.841 47.619 8.59 0.00 0.00 2.29
83 84 2.556622 TCAGCGAGAGTGACACATGTAA 59.443 45.455 8.59 0.00 0.00 2.41
84 85 3.005367 TCAGCGAGAGTGACACATGTAAA 59.995 43.478 8.59 0.00 0.00 2.01
85 86 3.928992 CAGCGAGAGTGACACATGTAAAT 59.071 43.478 8.59 0.00 0.00 1.40
86 87 5.102313 CAGCGAGAGTGACACATGTAAATA 58.898 41.667 8.59 0.00 0.00 1.40
87 88 5.576774 CAGCGAGAGTGACACATGTAAATAA 59.423 40.000 8.59 0.00 0.00 1.40
88 89 6.256539 CAGCGAGAGTGACACATGTAAATAAT 59.743 38.462 8.59 0.00 0.00 1.28
89 90 6.477033 AGCGAGAGTGACACATGTAAATAATC 59.523 38.462 8.59 0.00 0.00 1.75
90 91 6.255670 GCGAGAGTGACACATGTAAATAATCA 59.744 38.462 8.59 0.00 0.00 2.57
91 92 7.515841 GCGAGAGTGACACATGTAAATAATCAG 60.516 40.741 8.59 0.00 0.00 2.90
92 93 7.702348 CGAGAGTGACACATGTAAATAATCAGA 59.298 37.037 8.59 0.00 0.00 3.27
93 94 9.539825 GAGAGTGACACATGTAAATAATCAGAT 57.460 33.333 8.59 0.00 0.00 2.90
94 95 9.322773 AGAGTGACACATGTAAATAATCAGATG 57.677 33.333 8.59 0.00 0.00 2.90
95 96 9.317936 GAGTGACACATGTAAATAATCAGATGA 57.682 33.333 8.59 0.00 0.00 2.92
96 97 9.671279 AGTGACACATGTAAATAATCAGATGAA 57.329 29.630 8.59 0.00 0.00 2.57
97 98 9.926751 GTGACACATGTAAATAATCAGATGAAG 57.073 33.333 0.00 0.00 0.00 3.02
98 99 8.615211 TGACACATGTAAATAATCAGATGAAGC 58.385 33.333 0.00 0.00 0.00 3.86
99 100 8.743085 ACACATGTAAATAATCAGATGAAGCT 57.257 30.769 0.00 0.00 0.00 3.74
100 101 8.834465 ACACATGTAAATAATCAGATGAAGCTC 58.166 33.333 0.00 0.00 0.00 4.09
101 102 9.053840 CACATGTAAATAATCAGATGAAGCTCT 57.946 33.333 0.00 0.00 0.00 4.09
102 103 9.053840 ACATGTAAATAATCAGATGAAGCTCTG 57.946 33.333 0.00 0.00 43.33 3.35
103 104 9.053840 CATGTAAATAATCAGATGAAGCTCTGT 57.946 33.333 1.12 0.00 42.68 3.41
105 106 9.534565 TGTAAATAATCAGATGAAGCTCTGTAC 57.465 33.333 1.12 0.00 42.68 2.90
106 107 9.534565 GTAAATAATCAGATGAAGCTCTGTACA 57.465 33.333 0.00 0.00 42.68 2.90
107 108 8.659925 AAATAATCAGATGAAGCTCTGTACAG 57.340 34.615 17.17 17.17 42.68 2.74
108 109 5.674052 AATCAGATGAAGCTCTGTACAGT 57.326 39.130 21.99 2.89 42.68 3.55
109 110 6.782082 AATCAGATGAAGCTCTGTACAGTA 57.218 37.500 21.99 8.56 42.68 2.74
110 111 5.568685 TCAGATGAAGCTCTGTACAGTAC 57.431 43.478 21.99 14.92 42.68 2.73
111 112 5.257262 TCAGATGAAGCTCTGTACAGTACT 58.743 41.667 21.99 16.81 42.68 2.73
112 113 5.355630 TCAGATGAAGCTCTGTACAGTACTC 59.644 44.000 21.99 14.26 42.68 2.59
113 114 4.642885 AGATGAAGCTCTGTACAGTACTCC 59.357 45.833 21.99 9.59 0.00 3.85
114 115 3.090037 TGAAGCTCTGTACAGTACTCCC 58.910 50.000 21.99 14.71 0.00 4.30
115 116 3.245300 TGAAGCTCTGTACAGTACTCCCT 60.245 47.826 21.99 6.54 0.00 4.20
116 117 3.007473 AGCTCTGTACAGTACTCCCTC 57.993 52.381 21.99 4.53 0.00 4.30
117 118 2.025898 GCTCTGTACAGTACTCCCTCC 58.974 57.143 21.99 0.00 0.00 4.30
118 119 2.620886 GCTCTGTACAGTACTCCCTCCA 60.621 54.545 21.99 0.00 0.00 3.86
119 120 3.904717 CTCTGTACAGTACTCCCTCCAT 58.095 50.000 21.99 0.00 0.00 3.41
120 121 3.886505 CTCTGTACAGTACTCCCTCCATC 59.113 52.174 21.99 0.00 0.00 3.51
121 122 2.959707 CTGTACAGTACTCCCTCCATCC 59.040 54.545 15.06 0.00 0.00 3.51
122 123 2.317973 GTACAGTACTCCCTCCATCCC 58.682 57.143 3.19 0.00 0.00 3.85
123 124 0.716591 ACAGTACTCCCTCCATCCCA 59.283 55.000 0.00 0.00 0.00 4.37
124 125 1.295292 ACAGTACTCCCTCCATCCCAT 59.705 52.381 0.00 0.00 0.00 4.00
125 126 2.522705 ACAGTACTCCCTCCATCCCATA 59.477 50.000 0.00 0.00 0.00 2.74
126 127 3.051341 ACAGTACTCCCTCCATCCCATAA 60.051 47.826 0.00 0.00 0.00 1.90
127 128 4.171234 CAGTACTCCCTCCATCCCATAAT 58.829 47.826 0.00 0.00 0.00 1.28
128 129 4.019860 CAGTACTCCCTCCATCCCATAATG 60.020 50.000 0.00 0.00 0.00 1.90
129 130 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
130 131 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
131 132 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
132 133 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
133 134 4.838403 TCCCTCCATCCCATAATGTAAGA 58.162 43.478 0.00 0.00 0.00 2.10
134 135 5.231552 TCCCTCCATCCCATAATGTAAGAA 58.768 41.667 0.00 0.00 0.00 2.52
135 136 5.310594 TCCCTCCATCCCATAATGTAAGAAG 59.689 44.000 0.00 0.00 0.00 2.85
136 137 5.006386 CCTCCATCCCATAATGTAAGAAGC 58.994 45.833 0.00 0.00 0.00 3.86
137 138 5.222007 CCTCCATCCCATAATGTAAGAAGCT 60.222 44.000 0.00 0.00 0.00 3.74
138 139 6.266131 TCCATCCCATAATGTAAGAAGCTT 57.734 37.500 0.00 0.00 0.00 3.74
139 140 6.672593 TCCATCCCATAATGTAAGAAGCTTT 58.327 36.000 0.00 0.00 0.00 3.51
140 141 6.547141 TCCATCCCATAATGTAAGAAGCTTTG 59.453 38.462 0.00 0.00 0.00 2.77
141 142 6.322201 CCATCCCATAATGTAAGAAGCTTTGT 59.678 38.462 0.00 0.00 0.00 2.83
142 143 7.420800 CATCCCATAATGTAAGAAGCTTTGTC 58.579 38.462 0.00 0.00 0.00 3.18
143 144 6.480763 TCCCATAATGTAAGAAGCTTTGTCA 58.519 36.000 0.00 0.00 0.00 3.58
144 145 6.945435 TCCCATAATGTAAGAAGCTTTGTCAA 59.055 34.615 0.00 0.00 0.00 3.18
145 146 7.450014 TCCCATAATGTAAGAAGCTTTGTCAAA 59.550 33.333 0.00 0.00 0.00 2.69
146 147 8.087750 CCCATAATGTAAGAAGCTTTGTCAAAA 58.912 33.333 0.00 0.00 0.00 2.44
147 148 9.474920 CCATAATGTAAGAAGCTTTGTCAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
159 160 7.468922 GCTTTGTCAAAAAGCTTCTTACATT 57.531 32.000 4.91 0.00 46.64 2.71
160 161 8.574196 GCTTTGTCAAAAAGCTTCTTACATTA 57.426 30.769 4.91 0.00 46.64 1.90
161 162 9.196552 GCTTTGTCAAAAAGCTTCTTACATTAT 57.803 29.630 4.91 0.00 46.64 1.28
163 164 9.474920 TTTGTCAAAAAGCTTCTTACATTATGG 57.525 29.630 0.00 0.00 0.00 2.74
164 165 7.601856 TGTCAAAAAGCTTCTTACATTATGGG 58.398 34.615 0.00 0.00 0.00 4.00
165 166 7.450014 TGTCAAAAAGCTTCTTACATTATGGGA 59.550 33.333 0.00 0.00 0.00 4.37
166 167 7.755373 GTCAAAAAGCTTCTTACATTATGGGAC 59.245 37.037 0.00 0.00 0.00 4.46
167 168 6.436843 AAAAGCTTCTTACATTATGGGACG 57.563 37.500 0.00 0.00 0.00 4.79
168 169 4.073293 AGCTTCTTACATTATGGGACGG 57.927 45.455 0.00 0.00 0.00 4.79
169 170 3.709653 AGCTTCTTACATTATGGGACGGA 59.290 43.478 0.00 0.00 0.00 4.69
170 171 4.058817 GCTTCTTACATTATGGGACGGAG 58.941 47.826 0.00 0.00 0.00 4.63
171 172 4.632153 CTTCTTACATTATGGGACGGAGG 58.368 47.826 0.00 0.00 0.00 4.30
271 300 2.830772 ATGACATTACATGTGCGCAC 57.169 45.000 33.11 33.11 45.03 5.34
297 326 3.620488 TGCCCAAGTATGAATGAAGTCC 58.380 45.455 0.00 0.00 0.00 3.85
301 330 5.009631 CCCAAGTATGAATGAAGTCCACAA 58.990 41.667 0.00 0.00 0.00 3.33
307 336 3.286353 TGAATGAAGTCCACAAGTGCAA 58.714 40.909 0.00 0.00 0.00 4.08
324 353 2.877168 TGCAAAACCAAATGGATTGTGC 59.123 40.909 16.49 16.49 37.63 4.57
369 398 6.152661 TCCATACTCCAAACATTTGTTGGATC 59.847 38.462 6.36 0.00 38.44 3.36
391 420 0.317020 AAGTTTCAAAGCAGCGACGC 60.317 50.000 13.03 13.03 0.00 5.19
393 422 0.385974 GTTTCAAAGCAGCGACGCAT 60.386 50.000 23.70 4.33 0.00 4.73
394 423 0.385849 TTTCAAAGCAGCGACGCATG 60.386 50.000 23.70 17.38 0.00 4.06
395 424 1.227342 TTCAAAGCAGCGACGCATGA 61.227 50.000 23.70 14.27 0.00 3.07
396 425 1.510623 CAAAGCAGCGACGCATGAC 60.511 57.895 23.70 12.50 0.00 3.06
397 426 1.960763 AAAGCAGCGACGCATGACA 60.961 52.632 23.70 0.00 0.00 3.58
398 427 1.300971 AAAGCAGCGACGCATGACAT 61.301 50.000 23.70 0.00 0.00 3.06
399 428 1.300971 AAGCAGCGACGCATGACATT 61.301 50.000 23.70 9.92 0.00 2.71
400 429 1.135315 GCAGCGACGCATGACATTT 59.865 52.632 23.70 0.00 0.00 2.32
401 430 1.129879 GCAGCGACGCATGACATTTG 61.130 55.000 23.70 9.82 0.00 2.32
402 431 0.166597 CAGCGACGCATGACATTTGT 59.833 50.000 23.70 0.00 0.00 2.83
403 432 0.874390 AGCGACGCATGACATTTGTT 59.126 45.000 23.70 0.00 0.00 2.83
404 433 0.976963 GCGACGCATGACATTTGTTG 59.023 50.000 16.42 0.00 0.00 3.33
405 434 1.605500 CGACGCATGACATTTGTTGG 58.394 50.000 0.00 0.00 0.00 3.77
406 435 1.196581 CGACGCATGACATTTGTTGGA 59.803 47.619 0.00 0.00 0.00 3.53
407 436 2.159531 CGACGCATGACATTTGTTGGAT 60.160 45.455 0.00 0.00 0.00 3.41
408 437 3.670359 CGACGCATGACATTTGTTGGATT 60.670 43.478 0.00 0.00 0.00 3.01
409 438 3.836949 ACGCATGACATTTGTTGGATTC 58.163 40.909 0.00 0.00 0.00 2.52
410 439 3.255395 ACGCATGACATTTGTTGGATTCA 59.745 39.130 0.00 0.00 0.00 2.57
411 440 3.855379 CGCATGACATTTGTTGGATTCAG 59.145 43.478 0.00 0.00 0.00 3.02
412 441 4.178540 GCATGACATTTGTTGGATTCAGG 58.821 43.478 0.00 0.00 0.00 3.86
413 442 4.082081 GCATGACATTTGTTGGATTCAGGA 60.082 41.667 0.00 0.00 0.00 3.86
414 443 5.394883 GCATGACATTTGTTGGATTCAGGAT 60.395 40.000 0.00 0.00 0.00 3.24
415 444 5.902613 TGACATTTGTTGGATTCAGGATC 57.097 39.130 0.00 0.00 0.00 3.36
423 452 2.091852 GGATTCAGGATCCGCATCTC 57.908 55.000 5.98 1.13 44.73 2.75
424 453 1.345741 GGATTCAGGATCCGCATCTCA 59.654 52.381 5.98 0.00 44.73 3.27
425 454 2.612471 GGATTCAGGATCCGCATCTCAG 60.612 54.545 5.98 0.00 44.73 3.35
426 455 0.755079 TTCAGGATCCGCATCTCAGG 59.245 55.000 5.98 0.00 0.00 3.86
427 456 1.117749 TCAGGATCCGCATCTCAGGG 61.118 60.000 5.98 0.00 0.00 4.45
428 457 1.117749 CAGGATCCGCATCTCAGGGA 61.118 60.000 5.98 0.00 0.00 4.20
429 458 0.399091 AGGATCCGCATCTCAGGGAA 60.399 55.000 5.98 0.00 32.71 3.97
430 459 0.469917 GGATCCGCATCTCAGGGAAA 59.530 55.000 0.00 0.00 32.71 3.13
431 460 1.542108 GGATCCGCATCTCAGGGAAAG 60.542 57.143 0.00 0.00 32.71 2.62
432 461 1.139853 GATCCGCATCTCAGGGAAAGT 59.860 52.381 0.00 0.00 32.71 2.66
433 462 0.984230 TCCGCATCTCAGGGAAAGTT 59.016 50.000 0.00 0.00 0.00 2.66
434 463 2.184533 TCCGCATCTCAGGGAAAGTTA 58.815 47.619 0.00 0.00 0.00 2.24
435 464 2.771943 TCCGCATCTCAGGGAAAGTTAT 59.228 45.455 0.00 0.00 0.00 1.89
436 465 2.874701 CCGCATCTCAGGGAAAGTTATG 59.125 50.000 0.00 0.00 0.00 1.90
437 466 3.535561 CGCATCTCAGGGAAAGTTATGT 58.464 45.455 0.00 0.00 0.00 2.29
438 467 4.442893 CCGCATCTCAGGGAAAGTTATGTA 60.443 45.833 0.00 0.00 0.00 2.29
439 468 4.508124 CGCATCTCAGGGAAAGTTATGTAC 59.492 45.833 0.00 0.00 0.00 2.90
440 469 5.675538 GCATCTCAGGGAAAGTTATGTACT 58.324 41.667 0.00 0.00 39.32 2.73
441 470 5.755861 GCATCTCAGGGAAAGTTATGTACTC 59.244 44.000 0.00 0.00 35.54 2.59
442 471 6.407525 GCATCTCAGGGAAAGTTATGTACTCT 60.408 42.308 0.00 0.00 35.54 3.24
443 472 6.777213 TCTCAGGGAAAGTTATGTACTCTC 57.223 41.667 0.00 0.00 35.54 3.20
444 473 6.494952 TCTCAGGGAAAGTTATGTACTCTCT 58.505 40.000 0.00 0.00 35.54 3.10
445 474 6.603997 TCTCAGGGAAAGTTATGTACTCTCTC 59.396 42.308 0.00 0.00 35.54 3.20
446 475 5.657302 TCAGGGAAAGTTATGTACTCTCTCC 59.343 44.000 0.00 0.00 35.54 3.71
447 476 5.422331 CAGGGAAAGTTATGTACTCTCTCCA 59.578 44.000 0.00 0.00 35.54 3.86
448 477 6.098982 CAGGGAAAGTTATGTACTCTCTCCAT 59.901 42.308 0.00 0.00 35.54 3.41
449 478 6.325286 AGGGAAAGTTATGTACTCTCTCCATC 59.675 42.308 0.00 0.00 35.54 3.51
450 479 6.463190 GGGAAAGTTATGTACTCTCTCCATCC 60.463 46.154 0.00 0.00 35.54 3.51
451 480 5.776173 AAGTTATGTACTCTCTCCATCCG 57.224 43.478 0.00 0.00 35.54 4.18
452 481 4.794334 AGTTATGTACTCTCTCCATCCGT 58.206 43.478 0.00 0.00 28.23 4.69
453 482 5.202004 AGTTATGTACTCTCTCCATCCGTT 58.798 41.667 0.00 0.00 28.23 4.44
454 483 5.299782 AGTTATGTACTCTCTCCATCCGTTC 59.700 44.000 0.00 0.00 28.23 3.95
455 484 2.376109 TGTACTCTCTCCATCCGTTCC 58.624 52.381 0.00 0.00 0.00 3.62
456 485 2.291346 TGTACTCTCTCCATCCGTTCCA 60.291 50.000 0.00 0.00 0.00 3.53
457 486 1.938585 ACTCTCTCCATCCGTTCCAA 58.061 50.000 0.00 0.00 0.00 3.53
458 487 2.257207 ACTCTCTCCATCCGTTCCAAA 58.743 47.619 0.00 0.00 0.00 3.28
459 488 2.840651 ACTCTCTCCATCCGTTCCAAAT 59.159 45.455 0.00 0.00 0.00 2.32
460 489 3.264450 ACTCTCTCCATCCGTTCCAAATT 59.736 43.478 0.00 0.00 0.00 1.82
461 490 3.873910 TCTCTCCATCCGTTCCAAATTC 58.126 45.455 0.00 0.00 0.00 2.17
462 491 3.263170 TCTCTCCATCCGTTCCAAATTCA 59.737 43.478 0.00 0.00 0.00 2.57
463 492 3.609853 TCTCCATCCGTTCCAAATTCAG 58.390 45.455 0.00 0.00 0.00 3.02
464 493 2.684881 CTCCATCCGTTCCAAATTCAGG 59.315 50.000 0.00 0.00 0.00 3.86
465 494 2.307392 TCCATCCGTTCCAAATTCAGGA 59.693 45.455 0.00 0.00 0.00 3.86
466 495 3.053693 TCCATCCGTTCCAAATTCAGGAT 60.054 43.478 0.86 0.00 38.87 3.24
467 496 3.316308 CCATCCGTTCCAAATTCAGGATC 59.684 47.826 0.86 0.46 36.45 3.36
468 497 2.999331 TCCGTTCCAAATTCAGGATCC 58.001 47.619 2.48 2.48 34.56 3.36
469 498 2.307392 TCCGTTCCAAATTCAGGATCCA 59.693 45.455 15.82 0.00 34.56 3.41
470 499 3.053693 TCCGTTCCAAATTCAGGATCCAT 60.054 43.478 15.82 0.00 34.56 3.41
471 500 4.165180 TCCGTTCCAAATTCAGGATCCATA 59.835 41.667 15.82 0.00 34.56 2.74
472 501 4.275936 CCGTTCCAAATTCAGGATCCATAC 59.724 45.833 15.82 0.00 34.56 2.39
473 502 5.126067 CGTTCCAAATTCAGGATCCATACT 58.874 41.667 15.82 0.00 34.56 2.12
474 503 5.237344 CGTTCCAAATTCAGGATCCATACTC 59.763 44.000 15.82 0.00 34.56 2.59
475 504 5.310409 TCCAAATTCAGGATCCATACTCC 57.690 43.478 15.82 0.00 0.00 3.85
476 505 4.726317 TCCAAATTCAGGATCCATACTCCA 59.274 41.667 15.82 0.00 35.08 3.86
477 506 5.193527 TCCAAATTCAGGATCCATACTCCAA 59.806 40.000 15.82 0.00 35.08 3.53
478 507 5.893255 CCAAATTCAGGATCCATACTCCAAA 59.107 40.000 15.82 0.00 35.08 3.28
479 508 6.183360 CCAAATTCAGGATCCATACTCCAAAC 60.183 42.308 15.82 0.00 35.08 2.93
480 509 5.715439 ATTCAGGATCCATACTCCAAACA 57.285 39.130 15.82 0.00 35.08 2.83
481 510 5.715439 TTCAGGATCCATACTCCAAACAT 57.285 39.130 15.82 0.00 35.08 2.71
482 511 5.715439 TCAGGATCCATACTCCAAACATT 57.285 39.130 15.82 0.00 35.08 2.71
483 512 6.078456 TCAGGATCCATACTCCAAACATTT 57.922 37.500 15.82 0.00 35.08 2.32
484 513 5.887598 TCAGGATCCATACTCCAAACATTTG 59.112 40.000 15.82 0.00 35.08 2.32
485 514 5.653769 CAGGATCCATACTCCAAACATTTGT 59.346 40.000 15.82 0.00 36.45 2.83
486 515 6.153340 CAGGATCCATACTCCAAACATTTGTT 59.847 38.462 15.82 0.00 40.50 2.83
487 516 6.153340 AGGATCCATACTCCAAACATTTGTTG 59.847 38.462 15.82 0.00 38.44 3.33
488 517 5.720371 TCCATACTCCAAACATTTGTTGG 57.280 39.130 3.79 0.00 38.44 3.77
489 518 5.389520 TCCATACTCCAAACATTTGTTGGA 58.610 37.500 5.80 5.80 38.44 3.53
490 519 6.015918 TCCATACTCCAAACATTTGTTGGAT 58.984 36.000 6.36 1.20 38.44 3.41
491 520 6.152661 TCCATACTCCAAACATTTGTTGGATC 59.847 38.462 6.36 0.00 38.44 3.36
492 521 6.153340 CCATACTCCAAACATTTGTTGGATCT 59.847 38.462 6.36 0.00 38.44 2.75
493 522 7.339212 CCATACTCCAAACATTTGTTGGATCTA 59.661 37.037 6.36 1.02 38.44 1.98
494 523 8.739039 CATACTCCAAACATTTGTTGGATCTAA 58.261 33.333 6.36 0.00 38.44 2.10
495 524 7.595819 ACTCCAAACATTTGTTGGATCTAAA 57.404 32.000 6.36 0.00 38.44 1.85
496 525 7.661040 ACTCCAAACATTTGTTGGATCTAAAG 58.339 34.615 6.36 0.00 38.44 1.85
497 526 7.287696 ACTCCAAACATTTGTTGGATCTAAAGT 59.712 33.333 6.36 0.00 38.44 2.66
498 527 8.017418 TCCAAACATTTGTTGGATCTAAAGTT 57.983 30.769 1.75 0.00 38.44 2.66
499 528 8.482128 TCCAAACATTTGTTGGATCTAAAGTTT 58.518 29.630 1.75 0.00 38.44 2.66
500 529 9.108284 CCAAACATTTGTTGGATCTAAAGTTTT 57.892 29.630 0.00 0.00 38.44 2.43
501 530 9.919348 CAAACATTTGTTGGATCTAAAGTTTTG 57.081 29.630 0.00 0.00 38.44 2.44
502 531 9.665719 AAACATTTGTTGGATCTAAAGTTTTGT 57.334 25.926 0.00 0.00 38.44 2.83
503 532 8.647143 ACATTTGTTGGATCTAAAGTTTTGTG 57.353 30.769 0.00 0.00 0.00 3.33
504 533 7.710475 ACATTTGTTGGATCTAAAGTTTTGTGG 59.290 33.333 0.00 0.00 0.00 4.17
505 534 6.783708 TTGTTGGATCTAAAGTTTTGTGGT 57.216 33.333 0.00 0.00 0.00 4.16
506 535 7.883391 TTGTTGGATCTAAAGTTTTGTGGTA 57.117 32.000 0.00 0.00 0.00 3.25
507 536 8.472007 TTGTTGGATCTAAAGTTTTGTGGTAT 57.528 30.769 0.00 0.00 0.00 2.73
508 537 7.881142 TGTTGGATCTAAAGTTTTGTGGTATG 58.119 34.615 0.00 0.00 0.00 2.39
509 538 7.721842 TGTTGGATCTAAAGTTTTGTGGTATGA 59.278 33.333 0.00 0.00 0.00 2.15
510 539 8.573035 GTTGGATCTAAAGTTTTGTGGTATGAA 58.427 33.333 0.00 0.00 0.00 2.57
511 540 8.106247 TGGATCTAAAGTTTTGTGGTATGAAC 57.894 34.615 0.00 0.00 0.00 3.18
528 557 7.172532 TGGTATGAACTTTCTGTTGTGATGTAC 59.827 37.037 0.00 0.00 39.30 2.90
550 579 4.136051 CCCTTCAGGTTTTTACCACGTAA 58.864 43.478 0.00 0.00 0.00 3.18
551 580 4.763279 CCCTTCAGGTTTTTACCACGTAAT 59.237 41.667 0.00 0.00 0.00 1.89
552 581 5.242171 CCCTTCAGGTTTTTACCACGTAATT 59.758 40.000 0.00 0.00 0.00 1.40
553 582 6.239092 CCCTTCAGGTTTTTACCACGTAATTT 60.239 38.462 0.00 0.00 0.00 1.82
554 583 7.040548 CCCTTCAGGTTTTTACCACGTAATTTA 60.041 37.037 0.00 0.00 0.00 1.40
555 584 8.351461 CCTTCAGGTTTTTACCACGTAATTTAA 58.649 33.333 0.00 0.00 0.00 1.52
556 585 9.733219 CTTCAGGTTTTTACCACGTAATTTAAA 57.267 29.630 0.00 0.00 0.00 1.52
557 586 9.513727 TTCAGGTTTTTACCACGTAATTTAAAC 57.486 29.630 0.00 0.00 31.24 2.01
558 587 8.901793 TCAGGTTTTTACCACGTAATTTAAACT 58.098 29.630 11.82 0.00 31.99 2.66
566 595 9.943163 TTACCACGTAATTTAAACTAAAACCAC 57.057 29.630 0.00 0.00 0.00 4.16
567 596 7.131565 ACCACGTAATTTAAACTAAAACCACG 58.868 34.615 0.00 0.00 36.79 4.94
568 597 7.011857 ACCACGTAATTTAAACTAAAACCACGA 59.988 33.333 13.06 0.00 35.56 4.35
569 598 7.321034 CCACGTAATTTAAACTAAAACCACGAC 59.679 37.037 13.06 0.00 35.56 4.34
570 599 7.057118 CACGTAATTTAAACTAAAACCACGACG 59.943 37.037 13.06 0.00 35.56 5.12
571 600 7.043059 ACGTAATTTAAACTAAAACCACGACGA 60.043 33.333 0.00 0.00 35.56 4.20
572 601 7.472186 CGTAATTTAAACTAAAACCACGACGAG 59.528 37.037 0.00 0.00 34.74 4.18
573 602 6.849588 ATTTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
574 603 7.945033 ATTTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
575 604 7.763172 TTTAAACTAAAACCACGACGAGTAA 57.237 32.000 0.00 0.00 0.00 2.24
576 605 7.945033 TTAAACTAAAACCACGACGAGTAAT 57.055 32.000 0.00 0.00 0.00 1.89
577 606 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
578 607 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
579 608 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
580 609 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
581 610 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
582 611 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
583 612 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
584 613 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
585 614 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
586 615 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
587 616 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
588 617 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
589 618 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
590 619 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
591 620 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
592 621 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
593 622 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
600 629 3.202818 TGGAACGGAGGGAGTAGTACATA 59.797 47.826 2.52 0.00 0.00 2.29
606 635 5.718607 ACGGAGGGAGTAGTACATAACTTTT 59.281 40.000 2.52 0.00 39.80 2.27
625 654 3.904800 TTCCTGAGATGCGGATTTGTA 57.095 42.857 0.00 0.00 0.00 2.41
776 894 2.649331 GCGTACAGAAGGCTTCTACA 57.351 50.000 28.15 16.32 38.11 2.74
778 896 2.094649 GCGTACAGAAGGCTTCTACAGT 60.095 50.000 28.15 22.89 38.11 3.55
779 897 3.128242 GCGTACAGAAGGCTTCTACAGTA 59.872 47.826 28.15 21.93 38.11 2.74
780 898 4.731193 GCGTACAGAAGGCTTCTACAGTAG 60.731 50.000 28.15 17.27 38.11 2.57
784 902 4.395542 ACAGAAGGCTTCTACAGTAGTACG 59.604 45.833 28.15 14.55 38.11 3.67
809 927 9.737427 CGTATATTACAGGATATTGACCAGATC 57.263 37.037 0.00 0.00 0.00 2.75
829 947 1.728971 CAAGATGAGGCGAACACTGAC 59.271 52.381 0.00 0.00 0.00 3.51
830 948 1.261480 AGATGAGGCGAACACTGACT 58.739 50.000 0.00 0.00 0.00 3.41
831 949 2.447443 AGATGAGGCGAACACTGACTA 58.553 47.619 0.00 0.00 0.00 2.59
832 950 3.027412 AGATGAGGCGAACACTGACTAT 58.973 45.455 0.00 0.00 0.00 2.12
833 951 2.654749 TGAGGCGAACACTGACTATG 57.345 50.000 0.00 0.00 0.00 2.23
834 952 1.893137 TGAGGCGAACACTGACTATGT 59.107 47.619 0.00 0.00 0.00 2.29
835 953 2.299013 TGAGGCGAACACTGACTATGTT 59.701 45.455 0.00 0.00 42.95 2.71
845 963 7.468141 AACACTGACTATGTTCATAGAGTGA 57.532 36.000 28.33 9.92 35.32 3.41
846 964 7.094508 ACACTGACTATGTTCATAGAGTGAG 57.905 40.000 28.33 17.41 38.29 3.51
847 965 6.661377 ACACTGACTATGTTCATAGAGTGAGT 59.339 38.462 28.33 17.84 36.93 3.41
848 966 6.971756 CACTGACTATGTTCATAGAGTGAGTG 59.028 42.308 22.92 19.24 43.72 3.51
849 967 6.661377 ACTGACTATGTTCATAGAGTGAGTGT 59.339 38.462 21.78 10.17 35.54 3.55
850 968 7.829706 ACTGACTATGTTCATAGAGTGAGTGTA 59.170 37.037 21.78 0.00 35.54 2.90
851 969 8.753497 TGACTATGTTCATAGAGTGAGTGTAT 57.247 34.615 21.78 0.86 38.29 2.29
852 970 9.847224 TGACTATGTTCATAGAGTGAGTGTATA 57.153 33.333 21.78 0.00 38.29 1.47
854 972 8.775527 ACTATGTTCATAGAGTGAGTGTATACG 58.224 37.037 21.78 0.00 38.29 3.06
855 973 5.817988 TGTTCATAGAGTGAGTGTATACGC 58.182 41.667 8.42 8.42 38.29 4.42
856 974 4.727235 TCATAGAGTGAGTGTATACGCG 57.273 45.455 3.53 3.53 31.80 6.01
857 975 4.124970 TCATAGAGTGAGTGTATACGCGT 58.875 43.478 19.17 19.17 31.80 6.01
858 976 2.826979 AGAGTGAGTGTATACGCGTG 57.173 50.000 24.59 0.00 0.00 5.34
859 977 2.082231 AGAGTGAGTGTATACGCGTGT 58.918 47.619 24.59 19.31 0.00 4.49
860 978 3.264947 AGAGTGAGTGTATACGCGTGTA 58.735 45.455 24.59 18.01 34.45 2.90
861 979 3.875727 AGAGTGAGTGTATACGCGTGTAT 59.124 43.478 24.59 23.84 43.62 2.29
862 980 5.052481 AGAGTGAGTGTATACGCGTGTATA 58.948 41.667 24.59 21.82 41.50 1.47
863 981 5.699915 AGAGTGAGTGTATACGCGTGTATAT 59.300 40.000 26.67 14.50 43.52 0.86
864 982 5.686834 AGTGAGTGTATACGCGTGTATATG 58.313 41.667 26.67 0.00 43.52 1.78
865 983 5.467735 AGTGAGTGTATACGCGTGTATATGA 59.532 40.000 26.67 16.21 43.52 2.15
866 984 5.789021 GTGAGTGTATACGCGTGTATATGAG 59.211 44.000 26.67 0.00 43.52 2.90
867 985 4.720090 AGTGTATACGCGTGTATATGAGC 58.280 43.478 26.67 16.49 43.52 4.26
872 990 2.264207 CGCGTGTATATGAGCGTTTG 57.736 50.000 0.00 0.00 46.48 2.93
873 991 1.653679 CGCGTGTATATGAGCGTTTGC 60.654 52.381 0.00 0.00 46.48 3.68
884 1002 2.222592 GCGTTTGCGTCTGTACTGT 58.777 52.632 0.00 0.00 40.81 3.55
885 1003 0.111266 GCGTTTGCGTCTGTACTGTG 60.111 55.000 0.00 0.00 40.81 3.66
886 1004 1.205657 CGTTTGCGTCTGTACTGTGT 58.794 50.000 0.00 0.00 0.00 3.72
887 1005 1.591158 CGTTTGCGTCTGTACTGTGTT 59.409 47.619 0.00 0.00 0.00 3.32
891 1009 3.994204 TGCGTCTGTACTGTGTTCTAA 57.006 42.857 0.00 0.00 0.00 2.10
922 1200 1.475403 GCTCCTGCTGGTCTACTACA 58.525 55.000 9.73 0.00 36.03 2.74
992 1277 5.102953 TCGGAGGTCAGAATCAAAATCAT 57.897 39.130 0.00 0.00 0.00 2.45
1080 1365 0.896479 TCCACTTCATCCGGTCGTCA 60.896 55.000 0.00 0.00 0.00 4.35
1532 1845 2.675056 CGTCTCCGTCTCCGTCGTT 61.675 63.158 0.00 0.00 0.00 3.85
1801 2114 1.627329 AGGAGCATCAAGAGAACAGCA 59.373 47.619 0.00 0.00 36.25 4.41
1946 2277 5.121768 GCTCATCTCGATCTTCTCCTACTAC 59.878 48.000 0.00 0.00 0.00 2.73
1948 2279 6.460781 TCATCTCGATCTTCTCCTACTACTC 58.539 44.000 0.00 0.00 0.00 2.59
1977 2308 3.568007 TGGAGGAGAAATTTTCAACACCG 59.432 43.478 11.53 0.00 0.00 4.94
1978 2309 3.568430 GGAGGAGAAATTTTCAACACCGT 59.432 43.478 11.53 0.00 0.00 4.83
2569 2996 2.270205 CTGGACATGGCCGAGCTT 59.730 61.111 14.43 0.00 0.00 3.74
2700 3131 3.279434 AGCCTTAGGGTAGCGAAATTTG 58.721 45.455 0.00 0.00 34.45 2.32
2820 3254 2.489329 CCACAATCACATCACCAGAACC 59.511 50.000 0.00 0.00 0.00 3.62
2821 3255 3.415212 CACAATCACATCACCAGAACCT 58.585 45.455 0.00 0.00 0.00 3.50
2822 3256 3.189910 CACAATCACATCACCAGAACCTG 59.810 47.826 0.00 0.00 0.00 4.00
2823 3257 3.072915 ACAATCACATCACCAGAACCTGA 59.927 43.478 0.00 0.00 32.44 3.86
2824 3258 2.839486 TCACATCACCAGAACCTGAC 57.161 50.000 0.00 0.00 32.44 3.51
2825 3259 1.347707 TCACATCACCAGAACCTGACC 59.652 52.381 0.00 0.00 32.44 4.02
2826 3260 1.072173 CACATCACCAGAACCTGACCA 59.928 52.381 0.00 0.00 32.44 4.02
2827 3261 1.349026 ACATCACCAGAACCTGACCAG 59.651 52.381 0.00 0.00 32.44 4.00
2828 3262 1.625315 CATCACCAGAACCTGACCAGA 59.375 52.381 0.00 0.00 32.44 3.86
2829 3263 1.801242 TCACCAGAACCTGACCAGAA 58.199 50.000 0.00 0.00 32.44 3.02
2830 3264 1.416401 TCACCAGAACCTGACCAGAAC 59.584 52.381 0.00 0.00 32.44 3.01
2846 3280 2.992543 CAGAACTACTTCTGCACAGAGC 59.007 50.000 0.00 0.00 45.43 4.09
2913 3409 2.606725 CTCAAGATGATCGTGCTGTTCC 59.393 50.000 3.40 0.00 0.00 3.62
2964 3460 5.762179 TGAGATCTTGAAATACCAGTGGT 57.238 39.130 20.91 20.91 40.16 4.16
2992 3488 3.711704 AGACTGGTTTTCTCAGGTCTGAA 59.288 43.478 2.13 0.00 39.39 3.02
2997 3493 7.918076 ACTGGTTTTCTCAGGTCTGAAATATA 58.082 34.615 2.13 0.00 39.39 0.86
3054 3552 1.521681 AAAGAGGTATCGCCGCAGC 60.522 57.895 0.00 0.00 43.70 5.25
3147 3645 5.355596 ACTGTCTTTAGTATCTGAGCATGC 58.644 41.667 10.51 10.51 0.00 4.06
3305 3803 1.000060 CATGACCTTGCACCTGTTTGG 60.000 52.381 0.00 0.00 42.93 3.28
3443 3948 8.506168 TGATTAATGGGTAAGTCAAGATTGTC 57.494 34.615 0.00 0.00 0.00 3.18
3539 4044 3.000041 TGATTCTGCATTTCTACGCGTT 59.000 40.909 20.78 0.80 0.00 4.84
3628 4133 7.020474 AACAGTTGTTATCTCGTGCACGAAG 62.020 44.000 38.11 30.12 41.34 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.032678 ACAGGTGTCACTCTTCGCTG 59.967 55.000 2.35 3.25 0.00 5.18
1 2 1.617322 TACAGGTGTCACTCTTCGCT 58.383 50.000 2.35 0.00 0.00 4.93
2 3 2.433868 TTACAGGTGTCACTCTTCGC 57.566 50.000 2.35 0.00 0.00 4.70
3 4 6.811665 TGATTATTTACAGGTGTCACTCTTCG 59.188 38.462 2.35 0.00 0.00 3.79
4 5 8.547967 TTGATTATTTACAGGTGTCACTCTTC 57.452 34.615 2.35 0.00 0.00 2.87
5 6 8.918202 TTTGATTATTTACAGGTGTCACTCTT 57.082 30.769 2.35 0.00 0.00 2.85
6 7 8.950210 CATTTGATTATTTACAGGTGTCACTCT 58.050 33.333 2.35 0.00 0.00 3.24
7 8 8.946085 TCATTTGATTATTTACAGGTGTCACTC 58.054 33.333 2.35 0.00 0.00 3.51
8 9 8.862325 TCATTTGATTATTTACAGGTGTCACT 57.138 30.769 2.35 0.00 0.00 3.41
23 24 9.731819 GAGACACGAGTAACTATCATTTGATTA 57.268 33.333 0.00 0.00 36.05 1.75
24 25 8.251026 TGAGACACGAGTAACTATCATTTGATT 58.749 33.333 0.00 0.00 36.05 2.57
25 26 7.772166 TGAGACACGAGTAACTATCATTTGAT 58.228 34.615 0.00 0.00 38.51 2.57
26 27 7.153217 TGAGACACGAGTAACTATCATTTGA 57.847 36.000 0.00 0.00 0.00 2.69
27 28 7.463383 GCTTGAGACACGAGTAACTATCATTTG 60.463 40.741 0.00 0.00 32.82 2.32
28 29 6.531948 GCTTGAGACACGAGTAACTATCATTT 59.468 38.462 0.00 0.00 32.82 2.32
29 30 6.037098 GCTTGAGACACGAGTAACTATCATT 58.963 40.000 0.00 0.00 32.82 2.57
30 31 5.450688 GGCTTGAGACACGAGTAACTATCAT 60.451 44.000 0.00 0.00 32.82 2.45
31 32 4.142447 GGCTTGAGACACGAGTAACTATCA 60.142 45.833 0.00 0.00 32.82 2.15
32 33 4.352887 GGCTTGAGACACGAGTAACTATC 58.647 47.826 0.00 0.00 32.82 2.08
33 34 3.130693 GGGCTTGAGACACGAGTAACTAT 59.869 47.826 0.00 0.00 32.82 2.12
34 35 2.490903 GGGCTTGAGACACGAGTAACTA 59.509 50.000 0.00 0.00 32.82 2.24
35 36 1.272769 GGGCTTGAGACACGAGTAACT 59.727 52.381 0.00 0.00 32.82 2.24
36 37 1.711206 GGGCTTGAGACACGAGTAAC 58.289 55.000 0.00 0.00 32.82 2.50
37 38 0.242825 CGGGCTTGAGACACGAGTAA 59.757 55.000 0.00 0.00 32.82 2.24
38 39 1.592400 CCGGGCTTGAGACACGAGTA 61.592 60.000 0.00 0.00 32.82 2.59
39 40 2.651361 CGGGCTTGAGACACGAGT 59.349 61.111 0.00 0.00 32.82 4.18
40 41 2.125912 CCGGGCTTGAGACACGAG 60.126 66.667 0.00 0.00 0.00 4.18
41 42 2.035237 AAACCGGGCTTGAGACACGA 62.035 55.000 6.32 0.00 0.00 4.35
42 43 0.320073 TAAACCGGGCTTGAGACACG 60.320 55.000 6.32 0.00 0.00 4.49
43 44 2.007608 GATAAACCGGGCTTGAGACAC 58.992 52.381 6.32 0.00 0.00 3.67
44 45 1.626321 TGATAAACCGGGCTTGAGACA 59.374 47.619 6.32 0.00 0.00 3.41
45 46 2.280628 CTGATAAACCGGGCTTGAGAC 58.719 52.381 6.32 0.00 0.00 3.36
46 47 1.406887 GCTGATAAACCGGGCTTGAGA 60.407 52.381 6.32 0.00 0.00 3.27
47 48 1.017387 GCTGATAAACCGGGCTTGAG 58.983 55.000 6.32 0.00 0.00 3.02
48 49 0.742990 CGCTGATAAACCGGGCTTGA 60.743 55.000 6.32 0.00 0.00 3.02
49 50 0.742990 TCGCTGATAAACCGGGCTTG 60.743 55.000 6.32 0.00 0.00 4.01
50 51 0.462047 CTCGCTGATAAACCGGGCTT 60.462 55.000 6.32 0.47 0.00 4.35
51 52 1.144057 CTCGCTGATAAACCGGGCT 59.856 57.895 6.32 0.00 0.00 5.19
52 53 0.876342 CTCTCGCTGATAAACCGGGC 60.876 60.000 6.32 0.00 0.00 6.13
53 54 0.460311 ACTCTCGCTGATAAACCGGG 59.540 55.000 6.32 0.00 0.00 5.73
54 55 1.134367 TCACTCTCGCTGATAAACCGG 59.866 52.381 0.00 0.00 0.00 5.28
55 56 2.186076 GTCACTCTCGCTGATAAACCG 58.814 52.381 0.00 0.00 0.00 4.44
56 57 2.924290 GTGTCACTCTCGCTGATAAACC 59.076 50.000 0.00 0.00 0.00 3.27
57 58 3.575630 TGTGTCACTCTCGCTGATAAAC 58.424 45.455 4.27 0.00 0.00 2.01
58 59 3.934457 TGTGTCACTCTCGCTGATAAA 57.066 42.857 4.27 0.00 0.00 1.40
59 60 3.193479 ACATGTGTCACTCTCGCTGATAA 59.807 43.478 0.00 0.00 0.00 1.75
60 61 2.755103 ACATGTGTCACTCTCGCTGATA 59.245 45.455 0.00 0.00 0.00 2.15
61 62 1.547820 ACATGTGTCACTCTCGCTGAT 59.452 47.619 0.00 0.00 0.00 2.90
62 63 0.961753 ACATGTGTCACTCTCGCTGA 59.038 50.000 0.00 0.00 0.00 4.26
63 64 2.636768 TACATGTGTCACTCTCGCTG 57.363 50.000 9.11 0.00 0.00 5.18
64 65 3.660501 TTTACATGTGTCACTCTCGCT 57.339 42.857 9.11 0.00 0.00 4.93
65 66 6.255670 TGATTATTTACATGTGTCACTCTCGC 59.744 38.462 9.11 0.00 0.00 5.03
66 67 7.702348 TCTGATTATTTACATGTGTCACTCTCG 59.298 37.037 9.11 0.00 0.00 4.04
67 68 8.932945 TCTGATTATTTACATGTGTCACTCTC 57.067 34.615 9.11 0.00 0.00 3.20
68 69 9.322773 CATCTGATTATTTACATGTGTCACTCT 57.677 33.333 9.11 0.00 0.00 3.24
69 70 9.317936 TCATCTGATTATTTACATGTGTCACTC 57.682 33.333 9.11 0.00 0.00 3.51
70 71 9.671279 TTCATCTGATTATTTACATGTGTCACT 57.329 29.630 9.11 0.00 0.00 3.41
71 72 9.926751 CTTCATCTGATTATTTACATGTGTCAC 57.073 33.333 9.11 0.00 0.00 3.67
72 73 8.615211 GCTTCATCTGATTATTTACATGTGTCA 58.385 33.333 9.11 2.64 0.00 3.58
73 74 8.834465 AGCTTCATCTGATTATTTACATGTGTC 58.166 33.333 9.11 0.00 0.00 3.67
74 75 8.743085 AGCTTCATCTGATTATTTACATGTGT 57.257 30.769 9.11 0.00 0.00 3.72
75 76 9.053840 AGAGCTTCATCTGATTATTTACATGTG 57.946 33.333 9.11 0.00 0.00 3.21
90 91 4.642885 GGAGTACTGTACAGAGCTTCATCT 59.357 45.833 29.30 13.32 0.00 2.90
91 92 4.202070 GGGAGTACTGTACAGAGCTTCATC 60.202 50.000 29.30 14.81 0.00 2.92
92 93 3.702045 GGGAGTACTGTACAGAGCTTCAT 59.298 47.826 29.30 7.49 0.00 2.57
93 94 3.090037 GGGAGTACTGTACAGAGCTTCA 58.910 50.000 29.30 4.19 0.00 3.02
94 95 3.358118 AGGGAGTACTGTACAGAGCTTC 58.642 50.000 29.30 21.50 0.00 3.86
95 96 3.358118 GAGGGAGTACTGTACAGAGCTT 58.642 50.000 29.30 9.39 0.00 3.74
96 97 2.357361 GGAGGGAGTACTGTACAGAGCT 60.357 54.545 29.30 23.12 0.00 4.09
97 98 2.025898 GGAGGGAGTACTGTACAGAGC 58.974 57.143 29.30 19.17 0.00 4.09
98 99 3.367646 TGGAGGGAGTACTGTACAGAG 57.632 52.381 29.30 5.12 0.00 3.35
99 100 3.372784 GGATGGAGGGAGTACTGTACAGA 60.373 52.174 29.30 10.19 0.00 3.41
100 101 2.959707 GGATGGAGGGAGTACTGTACAG 59.040 54.545 21.44 21.44 0.00 2.74
101 102 2.358932 GGGATGGAGGGAGTACTGTACA 60.359 54.545 19.27 0.00 0.00 2.90
102 103 2.317973 GGGATGGAGGGAGTACTGTAC 58.682 57.143 9.93 9.93 0.00 2.90
103 104 1.934480 TGGGATGGAGGGAGTACTGTA 59.066 52.381 0.00 0.00 0.00 2.74
104 105 0.716591 TGGGATGGAGGGAGTACTGT 59.283 55.000 0.00 0.00 0.00 3.55
105 106 2.109229 ATGGGATGGAGGGAGTACTG 57.891 55.000 0.00 0.00 0.00 2.74
106 107 4.171234 CATTATGGGATGGAGGGAGTACT 58.829 47.826 0.00 0.00 0.00 2.73
107 108 3.910627 ACATTATGGGATGGAGGGAGTAC 59.089 47.826 0.00 0.00 0.00 2.73
108 109 4.228237 ACATTATGGGATGGAGGGAGTA 57.772 45.455 0.00 0.00 0.00 2.59
109 110 3.080660 ACATTATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
110 111 4.846367 TCTTACATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
111 112 4.838403 TCTTACATTATGGGATGGAGGGA 58.162 43.478 0.00 0.00 0.00 4.20
112 113 5.564550 CTTCTTACATTATGGGATGGAGGG 58.435 45.833 0.00 0.00 0.00 4.30
113 114 5.006386 GCTTCTTACATTATGGGATGGAGG 58.994 45.833 0.00 0.00 0.00 4.30
114 115 5.874093 AGCTTCTTACATTATGGGATGGAG 58.126 41.667 0.00 0.00 0.00 3.86
115 116 5.912149 AGCTTCTTACATTATGGGATGGA 57.088 39.130 0.00 0.00 0.00 3.41
116 117 6.322201 ACAAAGCTTCTTACATTATGGGATGG 59.678 38.462 0.00 0.00 0.00 3.51
117 118 7.067372 TGACAAAGCTTCTTACATTATGGGATG 59.933 37.037 0.00 0.00 0.00 3.51
118 119 7.118723 TGACAAAGCTTCTTACATTATGGGAT 58.881 34.615 0.00 0.00 0.00 3.85
119 120 6.480763 TGACAAAGCTTCTTACATTATGGGA 58.519 36.000 0.00 0.00 0.00 4.37
120 121 6.757897 TGACAAAGCTTCTTACATTATGGG 57.242 37.500 0.00 0.00 0.00 4.00
121 122 9.474920 TTTTTGACAAAGCTTCTTACATTATGG 57.525 29.630 0.00 0.00 0.00 2.74
123 124 9.196552 GCTTTTTGACAAAGCTTCTTACATTAT 57.803 29.630 8.69 0.00 46.64 1.28
124 125 8.574196 GCTTTTTGACAAAGCTTCTTACATTA 57.426 30.769 8.69 0.00 46.64 1.90
125 126 7.468922 GCTTTTTGACAAAGCTTCTTACATT 57.531 32.000 8.69 0.00 46.64 2.71
137 138 9.474920 CCATAATGTAAGAAGCTTTTTGACAAA 57.525 29.630 12.27 0.00 0.00 2.83
138 139 8.087750 CCCATAATGTAAGAAGCTTTTTGACAA 58.912 33.333 12.27 1.01 0.00 3.18
139 140 7.450014 TCCCATAATGTAAGAAGCTTTTTGACA 59.550 33.333 12.27 11.84 0.00 3.58
140 141 7.755373 GTCCCATAATGTAAGAAGCTTTTTGAC 59.245 37.037 12.27 7.26 0.00 3.18
141 142 7.361713 CGTCCCATAATGTAAGAAGCTTTTTGA 60.362 37.037 12.27 0.00 0.00 2.69
142 143 6.747280 CGTCCCATAATGTAAGAAGCTTTTTG 59.253 38.462 12.27 0.00 0.00 2.44
143 144 6.127730 CCGTCCCATAATGTAAGAAGCTTTTT 60.128 38.462 7.46 7.46 0.00 1.94
144 145 5.357032 CCGTCCCATAATGTAAGAAGCTTTT 59.643 40.000 0.00 0.00 0.00 2.27
145 146 4.881850 CCGTCCCATAATGTAAGAAGCTTT 59.118 41.667 0.00 0.00 0.00 3.51
146 147 4.163458 TCCGTCCCATAATGTAAGAAGCTT 59.837 41.667 0.00 0.00 0.00 3.74
147 148 3.709653 TCCGTCCCATAATGTAAGAAGCT 59.290 43.478 0.00 0.00 0.00 3.74
148 149 4.058817 CTCCGTCCCATAATGTAAGAAGC 58.941 47.826 0.00 0.00 0.00 3.86
149 150 4.632153 CCTCCGTCCCATAATGTAAGAAG 58.368 47.826 0.00 0.00 0.00 2.85
150 151 3.181458 GCCTCCGTCCCATAATGTAAGAA 60.181 47.826 0.00 0.00 0.00 2.52
151 152 2.367567 GCCTCCGTCCCATAATGTAAGA 59.632 50.000 0.00 0.00 0.00 2.10
152 153 2.104111 TGCCTCCGTCCCATAATGTAAG 59.896 50.000 0.00 0.00 0.00 2.34
153 154 2.104111 CTGCCTCCGTCCCATAATGTAA 59.896 50.000 0.00 0.00 0.00 2.41
154 155 1.691976 CTGCCTCCGTCCCATAATGTA 59.308 52.381 0.00 0.00 0.00 2.29
155 156 0.469917 CTGCCTCCGTCCCATAATGT 59.530 55.000 0.00 0.00 0.00 2.71
156 157 0.469917 ACTGCCTCCGTCCCATAATG 59.530 55.000 0.00 0.00 0.00 1.90
157 158 1.692519 GTACTGCCTCCGTCCCATAAT 59.307 52.381 0.00 0.00 0.00 1.28
158 159 1.117150 GTACTGCCTCCGTCCCATAA 58.883 55.000 0.00 0.00 0.00 1.90
159 160 0.032912 TGTACTGCCTCCGTCCCATA 60.033 55.000 0.00 0.00 0.00 2.74
160 161 0.691078 ATGTACTGCCTCCGTCCCAT 60.691 55.000 0.00 0.00 0.00 4.00
161 162 0.032912 TATGTACTGCCTCCGTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
162 163 1.117150 TTATGTACTGCCTCCGTCCC 58.883 55.000 0.00 0.00 0.00 4.46
163 164 2.973694 TTTATGTACTGCCTCCGTCC 57.026 50.000 0.00 0.00 0.00 4.79
164 165 3.391049 GGATTTATGTACTGCCTCCGTC 58.609 50.000 0.00 0.00 0.00 4.79
165 166 2.223971 CGGATTTATGTACTGCCTCCGT 60.224 50.000 12.96 0.00 39.36 4.69
166 167 2.404215 CGGATTTATGTACTGCCTCCG 58.596 52.381 9.06 9.06 38.31 4.63
167 168 3.470645 ACGGATTTATGTACTGCCTCC 57.529 47.619 0.00 0.00 0.00 4.30
168 169 8.656849 CATATTTACGGATTTATGTACTGCCTC 58.343 37.037 0.00 0.00 0.00 4.70
169 170 8.372459 TCATATTTACGGATTTATGTACTGCCT 58.628 33.333 0.00 0.00 0.00 4.75
170 171 8.542497 TCATATTTACGGATTTATGTACTGCC 57.458 34.615 0.00 0.00 0.00 4.85
271 300 2.953648 TCATTCATACTTGGGCAGCATG 59.046 45.455 0.00 0.00 40.87 4.06
297 326 3.529533 TCCATTTGGTTTTGCACTTGTG 58.470 40.909 0.00 0.00 36.34 3.33
301 330 4.128643 CACAATCCATTTGGTTTTGCACT 58.871 39.130 12.06 0.00 39.80 4.40
307 336 3.731089 CACAGCACAATCCATTTGGTTT 58.269 40.909 0.00 0.00 39.80 3.27
324 353 1.250328 TCCTGAATTTGGCAGCACAG 58.750 50.000 0.00 0.00 32.06 3.66
369 398 3.218398 CGTCGCTGCTTTGAAACTTTAG 58.782 45.455 0.00 0.00 0.00 1.85
391 420 5.648178 TCCTGAATCCAACAAATGTCATG 57.352 39.130 0.00 0.00 0.00 3.07
393 422 5.902613 GATCCTGAATCCAACAAATGTCA 57.097 39.130 0.00 0.00 0.00 3.58
405 434 2.612471 CCTGAGATGCGGATCCTGAATC 60.612 54.545 13.85 12.57 0.00 2.52
406 435 1.347050 CCTGAGATGCGGATCCTGAAT 59.653 52.381 13.85 3.36 0.00 2.57
407 436 0.755079 CCTGAGATGCGGATCCTGAA 59.245 55.000 13.85 0.00 0.00 3.02
408 437 1.117749 CCCTGAGATGCGGATCCTGA 61.118 60.000 13.85 0.00 0.00 3.86
409 438 1.117749 TCCCTGAGATGCGGATCCTG 61.118 60.000 13.85 8.89 0.00 3.86
410 439 0.399091 TTCCCTGAGATGCGGATCCT 60.399 55.000 13.85 0.79 0.00 3.24
411 440 0.469917 TTTCCCTGAGATGCGGATCC 59.530 55.000 13.85 0.00 0.00 3.36
412 441 1.139853 ACTTTCCCTGAGATGCGGATC 59.860 52.381 9.16 9.16 0.00 3.36
413 442 1.207791 ACTTTCCCTGAGATGCGGAT 58.792 50.000 0.00 0.00 0.00 4.18
414 443 0.984230 AACTTTCCCTGAGATGCGGA 59.016 50.000 0.00 0.00 0.00 5.54
415 444 2.691409 TAACTTTCCCTGAGATGCGG 57.309 50.000 0.00 0.00 0.00 5.69
416 445 3.535561 ACATAACTTTCCCTGAGATGCG 58.464 45.455 0.00 0.00 0.00 4.73
417 446 5.675538 AGTACATAACTTTCCCTGAGATGC 58.324 41.667 0.00 0.00 33.35 3.91
418 447 7.069331 AGAGAGTACATAACTTTCCCTGAGATG 59.931 40.741 0.00 0.00 39.60 2.90
419 448 7.129425 AGAGAGTACATAACTTTCCCTGAGAT 58.871 38.462 0.00 0.00 39.60 2.75
420 449 6.494952 AGAGAGTACATAACTTTCCCTGAGA 58.505 40.000 0.00 0.00 39.60 3.27
421 450 6.183360 GGAGAGAGTACATAACTTTCCCTGAG 60.183 46.154 0.00 0.00 39.60 3.35
422 451 5.657302 GGAGAGAGTACATAACTTTCCCTGA 59.343 44.000 0.00 0.00 39.60 3.86
423 452 5.422331 TGGAGAGAGTACATAACTTTCCCTG 59.578 44.000 12.56 0.00 39.60 4.45
424 453 5.590818 TGGAGAGAGTACATAACTTTCCCT 58.409 41.667 12.56 0.00 39.60 4.20
425 454 5.934402 TGGAGAGAGTACATAACTTTCCC 57.066 43.478 12.56 0.00 39.60 3.97
426 455 6.517605 GGATGGAGAGAGTACATAACTTTCC 58.482 44.000 0.00 4.18 39.60 3.13
427 456 6.183360 ACGGATGGAGAGAGTACATAACTTTC 60.183 42.308 0.00 0.00 39.07 2.62
428 457 5.657302 ACGGATGGAGAGAGTACATAACTTT 59.343 40.000 0.00 0.00 39.07 2.66
429 458 5.202004 ACGGATGGAGAGAGTACATAACTT 58.798 41.667 0.00 0.00 39.07 2.66
430 459 4.794334 ACGGATGGAGAGAGTACATAACT 58.206 43.478 0.00 0.00 42.80 2.24
431 460 5.507650 GGAACGGATGGAGAGAGTACATAAC 60.508 48.000 0.00 0.00 0.00 1.89
432 461 4.583489 GGAACGGATGGAGAGAGTACATAA 59.417 45.833 0.00 0.00 0.00 1.90
433 462 4.142790 GGAACGGATGGAGAGAGTACATA 58.857 47.826 0.00 0.00 0.00 2.29
434 463 2.959707 GGAACGGATGGAGAGAGTACAT 59.040 50.000 0.00 0.00 0.00 2.29
435 464 2.291346 TGGAACGGATGGAGAGAGTACA 60.291 50.000 0.00 0.00 0.00 2.90
436 465 2.376109 TGGAACGGATGGAGAGAGTAC 58.624 52.381 0.00 0.00 0.00 2.73
437 466 2.820728 TGGAACGGATGGAGAGAGTA 57.179 50.000 0.00 0.00 0.00 2.59
438 467 1.938585 TTGGAACGGATGGAGAGAGT 58.061 50.000 0.00 0.00 0.00 3.24
439 468 3.550437 ATTTGGAACGGATGGAGAGAG 57.450 47.619 0.00 0.00 0.00 3.20
440 469 3.263170 TGAATTTGGAACGGATGGAGAGA 59.737 43.478 0.00 0.00 0.00 3.10
441 470 3.609853 TGAATTTGGAACGGATGGAGAG 58.390 45.455 0.00 0.00 0.00 3.20
442 471 3.609853 CTGAATTTGGAACGGATGGAGA 58.390 45.455 0.00 0.00 0.00 3.71
443 472 2.684881 CCTGAATTTGGAACGGATGGAG 59.315 50.000 0.00 0.00 0.00 3.86
444 473 2.307392 TCCTGAATTTGGAACGGATGGA 59.693 45.455 0.00 0.00 0.00 3.41
445 474 2.722094 TCCTGAATTTGGAACGGATGG 58.278 47.619 0.00 0.00 0.00 3.51
446 475 3.316308 GGATCCTGAATTTGGAACGGATG 59.684 47.826 3.84 0.00 37.13 3.51
447 476 3.053693 TGGATCCTGAATTTGGAACGGAT 60.054 43.478 14.23 0.00 37.13 4.18
448 477 2.307392 TGGATCCTGAATTTGGAACGGA 59.693 45.455 14.23 0.00 37.13 4.69
449 478 2.722094 TGGATCCTGAATTTGGAACGG 58.278 47.619 14.23 0.00 37.13 4.44
450 479 5.126067 AGTATGGATCCTGAATTTGGAACG 58.874 41.667 14.23 0.00 37.13 3.95
451 480 5.532779 GGAGTATGGATCCTGAATTTGGAAC 59.467 44.000 14.23 3.46 37.13 3.62
452 481 5.193527 TGGAGTATGGATCCTGAATTTGGAA 59.806 40.000 14.23 0.00 37.74 3.53
453 482 4.726317 TGGAGTATGGATCCTGAATTTGGA 59.274 41.667 14.23 4.01 37.74 3.53
454 483 5.052693 TGGAGTATGGATCCTGAATTTGG 57.947 43.478 14.23 0.00 37.74 3.28
455 484 6.377996 TGTTTGGAGTATGGATCCTGAATTTG 59.622 38.462 14.23 0.00 37.74 2.32
456 485 6.493166 TGTTTGGAGTATGGATCCTGAATTT 58.507 36.000 14.23 0.00 37.74 1.82
457 486 6.078456 TGTTTGGAGTATGGATCCTGAATT 57.922 37.500 14.23 0.00 37.74 2.17
458 487 5.715439 TGTTTGGAGTATGGATCCTGAAT 57.285 39.130 14.23 0.28 37.74 2.57
459 488 5.715439 ATGTTTGGAGTATGGATCCTGAA 57.285 39.130 14.23 0.00 37.74 3.02
460 489 5.715439 AATGTTTGGAGTATGGATCCTGA 57.285 39.130 14.23 0.00 37.74 3.86
461 490 5.653769 ACAAATGTTTGGAGTATGGATCCTG 59.346 40.000 14.23 0.00 42.34 3.86
462 491 5.831103 ACAAATGTTTGGAGTATGGATCCT 58.169 37.500 14.23 0.89 42.34 3.24
463 492 6.332630 CAACAAATGTTTGGAGTATGGATCC 58.667 40.000 4.20 4.20 42.34 3.36
464 493 6.152661 TCCAACAAATGTTTGGAGTATGGATC 59.847 38.462 9.98 0.00 42.34 3.36
465 494 6.015918 TCCAACAAATGTTTGGAGTATGGAT 58.984 36.000 9.98 0.00 42.34 3.41
466 495 5.389520 TCCAACAAATGTTTGGAGTATGGA 58.610 37.500 9.98 10.93 42.34 3.41
467 496 5.720371 TCCAACAAATGTTTGGAGTATGG 57.280 39.130 9.98 9.24 42.34 2.74
468 497 7.161773 AGATCCAACAAATGTTTGGAGTATG 57.838 36.000 16.76 1.98 42.34 2.39
469 498 8.877864 TTAGATCCAACAAATGTTTGGAGTAT 57.122 30.769 16.76 10.75 42.34 2.12
470 499 8.698973 TTTAGATCCAACAAATGTTTGGAGTA 57.301 30.769 16.76 11.12 42.34 2.59
471 500 7.287696 ACTTTAGATCCAACAAATGTTTGGAGT 59.712 33.333 16.76 11.75 42.34 3.85
472 501 7.661040 ACTTTAGATCCAACAAATGTTTGGAG 58.339 34.615 16.76 2.35 42.34 3.86
473 502 7.595819 ACTTTAGATCCAACAAATGTTTGGA 57.404 32.000 15.12 15.12 42.34 3.53
474 503 8.661352 AAACTTTAGATCCAACAAATGTTTGG 57.339 30.769 9.98 2.80 42.34 3.28
475 504 9.919348 CAAAACTTTAGATCCAACAAATGTTTG 57.081 29.630 4.04 4.04 43.62 2.93
476 505 9.665719 ACAAAACTTTAGATCCAACAAATGTTT 57.334 25.926 0.00 0.00 35.83 2.83
477 506 9.097257 CACAAAACTTTAGATCCAACAAATGTT 57.903 29.630 0.00 0.00 39.12 2.71
478 507 7.710475 CCACAAAACTTTAGATCCAACAAATGT 59.290 33.333 0.00 0.00 0.00 2.71
479 508 7.710475 ACCACAAAACTTTAGATCCAACAAATG 59.290 33.333 0.00 0.00 0.00 2.32
480 509 7.791029 ACCACAAAACTTTAGATCCAACAAAT 58.209 30.769 0.00 0.00 0.00 2.32
481 510 7.176589 ACCACAAAACTTTAGATCCAACAAA 57.823 32.000 0.00 0.00 0.00 2.83
482 511 6.783708 ACCACAAAACTTTAGATCCAACAA 57.216 33.333 0.00 0.00 0.00 2.83
483 512 7.721842 TCATACCACAAAACTTTAGATCCAACA 59.278 33.333 0.00 0.00 0.00 3.33
484 513 8.106247 TCATACCACAAAACTTTAGATCCAAC 57.894 34.615 0.00 0.00 0.00 3.77
485 514 8.573035 GTTCATACCACAAAACTTTAGATCCAA 58.427 33.333 0.00 0.00 0.00 3.53
486 515 7.942341 AGTTCATACCACAAAACTTTAGATCCA 59.058 33.333 0.00 0.00 0.00 3.41
487 516 8.336801 AGTTCATACCACAAAACTTTAGATCC 57.663 34.615 0.00 0.00 0.00 3.36
490 519 9.403583 AGAAAGTTCATACCACAAAACTTTAGA 57.596 29.630 10.93 0.00 46.43 2.10
491 520 9.450807 CAGAAAGTTCATACCACAAAACTTTAG 57.549 33.333 10.93 5.15 46.43 1.85
492 521 8.962679 ACAGAAAGTTCATACCACAAAACTTTA 58.037 29.630 10.93 0.00 46.43 1.85
494 523 7.404671 ACAGAAAGTTCATACCACAAAACTT 57.595 32.000 0.00 0.00 42.20 2.66
495 524 7.093945 ACAACAGAAAGTTCATACCACAAAACT 60.094 33.333 0.00 0.00 38.74 2.66
496 525 7.009174 CACAACAGAAAGTTCATACCACAAAAC 59.991 37.037 0.00 0.00 38.74 2.43
497 526 7.032580 CACAACAGAAAGTTCATACCACAAAA 58.967 34.615 0.00 0.00 38.74 2.44
498 527 6.375736 TCACAACAGAAAGTTCATACCACAAA 59.624 34.615 0.00 0.00 38.74 2.83
499 528 5.883115 TCACAACAGAAAGTTCATACCACAA 59.117 36.000 0.00 0.00 38.74 3.33
500 529 5.432645 TCACAACAGAAAGTTCATACCACA 58.567 37.500 0.00 0.00 38.74 4.17
501 530 6.017109 ACATCACAACAGAAAGTTCATACCAC 60.017 38.462 0.00 0.00 38.74 4.16
502 531 6.061441 ACATCACAACAGAAAGTTCATACCA 58.939 36.000 0.00 0.00 38.74 3.25
503 532 6.560253 ACATCACAACAGAAAGTTCATACC 57.440 37.500 0.00 0.00 38.74 2.73
504 533 7.360946 GGGTACATCACAACAGAAAGTTCATAC 60.361 40.741 0.00 0.00 38.74 2.39
505 534 6.653320 GGGTACATCACAACAGAAAGTTCATA 59.347 38.462 0.00 0.00 38.74 2.15
506 535 5.473504 GGGTACATCACAACAGAAAGTTCAT 59.526 40.000 0.00 0.00 38.74 2.57
507 536 4.819630 GGGTACATCACAACAGAAAGTTCA 59.180 41.667 0.00 0.00 38.74 3.18
508 537 5.063880 AGGGTACATCACAACAGAAAGTTC 58.936 41.667 0.00 0.00 38.74 3.01
509 538 5.048846 AGGGTACATCACAACAGAAAGTT 57.951 39.130 0.00 0.00 42.42 2.66
510 539 4.706842 AGGGTACATCACAACAGAAAGT 57.293 40.909 0.00 0.00 0.00 2.66
511 540 5.063204 TGAAGGGTACATCACAACAGAAAG 58.937 41.667 0.00 0.00 0.00 2.62
528 557 2.578786 ACGTGGTAAAAACCTGAAGGG 58.421 47.619 0.56 0.00 40.27 3.95
550 579 6.849588 ACTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
551 580 7.763172 TTACTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
552 581 7.945033 ATTACTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
553 582 7.945033 AATTACTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
554 583 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
555 584 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
556 585 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
557 586 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
558 587 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
559 588 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
560 589 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
561 590 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
562 591 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
563 592 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
564 593 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
565 594 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
566 595 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
567 596 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
568 597 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
569 598 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
570 599 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
571 600 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
572 601 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
573 602 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
574 603 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
575 604 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
576 605 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
577 606 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
578 607 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
579 608 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
580 609 4.886489 AGTTATGTACTACTCCCTCCGTTC 59.114 45.833 0.00 0.00 34.56 3.95
581 610 4.864726 AGTTATGTACTACTCCCTCCGTT 58.135 43.478 0.00 0.00 34.56 4.44
582 611 4.516652 AGTTATGTACTACTCCCTCCGT 57.483 45.455 0.00 0.00 34.56 4.69
583 612 5.848833 AAAGTTATGTACTACTCCCTCCG 57.151 43.478 0.00 0.00 35.54 4.63
584 613 6.383436 AGGAAAAGTTATGTACTACTCCCTCC 59.617 42.308 0.00 3.26 38.00 4.30
585 614 7.123847 TCAGGAAAAGTTATGTACTACTCCCTC 59.876 40.741 0.00 0.00 38.00 4.30
586 615 6.958192 TCAGGAAAAGTTATGTACTACTCCCT 59.042 38.462 0.00 1.51 38.00 4.20
587 616 7.123847 TCTCAGGAAAAGTTATGTACTACTCCC 59.876 40.741 0.00 0.00 38.00 4.30
588 617 8.064336 TCTCAGGAAAAGTTATGTACTACTCC 57.936 38.462 0.00 0.00 37.73 3.85
589 618 9.522804 CATCTCAGGAAAAGTTATGTACTACTC 57.477 37.037 0.00 0.00 35.54 2.59
590 619 7.982354 GCATCTCAGGAAAAGTTATGTACTACT 59.018 37.037 0.00 0.00 35.54 2.57
591 620 7.043325 CGCATCTCAGGAAAAGTTATGTACTAC 60.043 40.741 0.00 0.00 35.54 2.73
592 621 6.978659 CGCATCTCAGGAAAAGTTATGTACTA 59.021 38.462 0.00 0.00 35.54 1.82
593 622 5.812642 CGCATCTCAGGAAAAGTTATGTACT 59.187 40.000 0.00 0.00 39.32 2.73
600 629 2.859165 TCCGCATCTCAGGAAAAGTT 57.141 45.000 0.00 0.00 32.86 2.66
606 635 5.745312 ATATACAAATCCGCATCTCAGGA 57.255 39.130 0.00 0.00 41.30 3.86
779 897 9.524496 TGGTCAATATCCTGTAATATACGTACT 57.476 33.333 0.00 0.00 0.00 2.73
780 898 9.784680 CTGGTCAATATCCTGTAATATACGTAC 57.215 37.037 0.00 0.00 0.00 3.67
809 927 1.728971 GTCAGTGTTCGCCTCATCTTG 59.271 52.381 0.00 0.00 0.00 3.02
829 947 7.746916 GCGTATACACTCACTCTATGAACATAG 59.253 40.741 13.67 13.67 41.58 2.23
830 948 7.570691 CGCGTATACACTCACTCTATGAACATA 60.571 40.741 0.00 0.00 36.69 2.29
831 949 6.439599 GCGTATACACTCACTCTATGAACAT 58.560 40.000 3.32 0.00 36.69 2.71
832 950 5.503520 CGCGTATACACTCACTCTATGAACA 60.504 44.000 0.00 0.00 36.69 3.18
833 951 4.904724 CGCGTATACACTCACTCTATGAAC 59.095 45.833 0.00 0.00 36.69 3.18
834 952 4.573607 ACGCGTATACACTCACTCTATGAA 59.426 41.667 11.67 0.00 36.69 2.57
835 953 4.025145 CACGCGTATACACTCACTCTATGA 60.025 45.833 13.44 0.00 35.45 2.15
836 954 4.212150 CACGCGTATACACTCACTCTATG 58.788 47.826 13.44 0.00 0.00 2.23
837 955 3.875727 ACACGCGTATACACTCACTCTAT 59.124 43.478 13.44 0.00 0.00 1.98
838 956 3.264947 ACACGCGTATACACTCACTCTA 58.735 45.455 13.44 0.00 0.00 2.43
839 957 2.082231 ACACGCGTATACACTCACTCT 58.918 47.619 13.44 0.00 0.00 3.24
840 958 2.539346 ACACGCGTATACACTCACTC 57.461 50.000 13.44 0.00 0.00 3.51
841 959 5.467735 TCATATACACGCGTATACACTCACT 59.532 40.000 13.44 0.00 42.10 3.41
842 960 5.682869 TCATATACACGCGTATACACTCAC 58.317 41.667 13.44 0.00 42.10 3.51
843 961 5.616204 GCTCATATACACGCGTATACACTCA 60.616 44.000 13.44 0.00 42.10 3.41
844 962 4.787083 GCTCATATACACGCGTATACACTC 59.213 45.833 13.44 0.00 42.10 3.51
845 963 4.668431 CGCTCATATACACGCGTATACACT 60.668 45.833 13.44 0.00 42.10 3.55
846 964 3.537225 CGCTCATATACACGCGTATACAC 59.463 47.826 13.44 0.00 42.10 2.90
847 965 3.739494 CGCTCATATACACGCGTATACA 58.261 45.455 13.44 0.00 42.10 2.29
854 972 1.653679 CGCAAACGCTCATATACACGC 60.654 52.381 0.00 0.00 0.00 5.34
855 973 1.586578 ACGCAAACGCTCATATACACG 59.413 47.619 0.00 0.00 45.53 4.49
856 974 2.858344 AGACGCAAACGCTCATATACAC 59.142 45.455 0.00 0.00 45.53 2.90
857 975 2.857748 CAGACGCAAACGCTCATATACA 59.142 45.455 0.00 0.00 45.53 2.29
858 976 2.858344 ACAGACGCAAACGCTCATATAC 59.142 45.455 0.00 0.00 45.53 1.47
859 977 3.159353 ACAGACGCAAACGCTCATATA 57.841 42.857 0.00 0.00 45.53 0.86
860 978 2.010145 ACAGACGCAAACGCTCATAT 57.990 45.000 0.00 0.00 45.53 1.78
861 979 2.094906 AGTACAGACGCAAACGCTCATA 60.095 45.455 0.00 0.00 45.53 2.15
862 980 1.068474 GTACAGACGCAAACGCTCAT 58.932 50.000 0.00 0.00 45.53 2.90
863 981 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.000 0.00 0.00 45.53 4.26
864 982 0.435008 CAGTACAGACGCAAACGCTC 59.565 55.000 0.00 0.00 45.53 5.03
865 983 0.249322 ACAGTACAGACGCAAACGCT 60.249 50.000 0.00 0.00 45.53 5.07
866 984 0.111266 CACAGTACAGACGCAAACGC 60.111 55.000 0.00 0.00 45.53 4.84
868 986 2.864343 AGAACACAGTACAGACGCAAAC 59.136 45.455 0.00 0.00 0.00 2.93
869 987 3.173668 AGAACACAGTACAGACGCAAA 57.826 42.857 0.00 0.00 0.00 3.68
870 988 2.882927 AGAACACAGTACAGACGCAA 57.117 45.000 0.00 0.00 0.00 4.85
871 989 3.994204 TTAGAACACAGTACAGACGCA 57.006 42.857 0.00 0.00 0.00 5.24
872 990 5.646467 TTTTTAGAACACAGTACAGACGC 57.354 39.130 0.00 0.00 0.00 5.19
922 1200 0.458260 TGTCTGTGTGTGCGTGTAGT 59.542 50.000 0.00 0.00 0.00 2.73
1020 1305 0.323725 GGGCAAGGAAGAGCATGGAA 60.324 55.000 0.00 0.00 0.00 3.53
1063 1348 1.071019 CGTGACGACCGGATGAAGTG 61.071 60.000 9.46 0.00 0.00 3.16
1080 1365 4.473520 CTTCCCTCATGCCGGCGT 62.474 66.667 23.90 20.88 0.00 5.68
1137 1425 2.284625 TGGAGGTGGCCGATGACT 60.285 61.111 0.00 0.00 0.00 3.41
1276 1564 2.406559 CTGGGTCTTCATGATCTCCCT 58.593 52.381 21.85 0.00 36.23 4.20
1532 1845 4.680237 CGCTCAGGTTCACCGCCA 62.680 66.667 0.00 0.00 42.08 5.69
1563 1876 2.705826 GACGAGTCCGCGACGTAT 59.294 61.111 8.23 0.00 40.29 3.06
1629 1942 3.531207 CTCCGCTCCAGCATCCGA 61.531 66.667 0.00 0.00 42.21 4.55
1948 2279 7.039784 TGTTGAAAATTTCTCCTCCATTGTAGG 60.040 37.037 7.29 0.00 35.26 3.18
1977 2308 0.368907 TTAGTCGCCGACGTACGTAC 59.631 55.000 22.87 15.37 41.18 3.67
1978 2309 0.368907 GTTAGTCGCCGACGTACGTA 59.631 55.000 22.87 1.54 41.18 3.57
2621 3048 1.078708 GCTTTGGCAATGGCATGCT 60.079 52.632 18.92 0.00 45.68 3.79
2700 3131 4.660789 AGCAATAAATCTCCCATGTTGC 57.339 40.909 4.27 4.27 40.37 4.17
2797 3231 3.507162 TCTGGTGATGTGATTGTGGTT 57.493 42.857 0.00 0.00 0.00 3.67
2826 3260 3.311486 GCTCTGTGCAGAAGTAGTTCT 57.689 47.619 7.02 7.02 44.40 3.01
2913 3409 5.408604 ACCAAATAACAGAAGTACAGAAGCG 59.591 40.000 0.00 0.00 0.00 4.68
2943 3439 4.806247 CGACCACTGGTATTTCAAGATCTC 59.194 45.833 0.00 0.00 35.25 2.75
2964 3460 4.527038 ACCTGAGAAAACCAGTCTAATCGA 59.473 41.667 0.00 0.00 0.00 3.59
3147 3645 2.827921 CCCAGGGTTCTTCAAAGGATTG 59.172 50.000 0.00 0.00 37.92 2.67
3305 3803 6.142798 CACTGCAATTATATGACGCCATTTTC 59.857 38.462 0.00 0.00 34.31 2.29
3443 3948 2.053627 GCCATCTCAAAAAGTGTTGCG 58.946 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.