Multiple sequence alignment - TraesCS1B01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G256500 chr1B 100.000 3237 0 0 1 3237 452023047 452026283 0.000000e+00 5978.0
1 TraesCS1B01G256500 chr1B 100.000 1260 0 0 3597 4856 452026643 452027902 0.000000e+00 2327.0
2 TraesCS1B01G256500 chr1B 98.780 164 2 0 4352 4515 354231401 354231564 4.750000e-75 292.0
3 TraesCS1B01G256500 chr1B 85.417 240 27 7 4335 4571 595460301 595460067 4.860000e-60 243.0
4 TraesCS1B01G256500 chr1B 77.515 169 19 10 4516 4668 655094632 655094467 3.110000e-12 84.2
5 TraesCS1B01G256500 chr1D 93.771 2392 100 17 856 3237 336341855 336344207 0.000000e+00 3546.0
6 TraesCS1B01G256500 chr1D 93.362 467 26 4 3888 4350 336344875 336345340 0.000000e+00 686.0
7 TraesCS1B01G256500 chr1D 96.751 277 9 0 3618 3894 336344551 336344827 3.420000e-126 462.0
8 TraesCS1B01G256500 chr1D 87.328 363 23 11 4512 4856 336345340 336345697 1.270000e-105 394.0
9 TraesCS1B01G256500 chr1D 93.782 193 11 1 4352 4543 12946809 12947001 6.150000e-74 289.0
10 TraesCS1B01G256500 chr1D 77.778 279 31 18 4514 4771 124314857 124315125 5.070000e-30 143.0
11 TraesCS1B01G256500 chr1A 93.464 2402 96 25 866 3237 434638577 434640947 0.000000e+00 3509.0
12 TraesCS1B01G256500 chr1A 93.820 356 16 3 3888 4237 434641294 434641649 9.250000e-147 531.0
13 TraesCS1B01G256500 chr1A 96.820 283 9 0 3612 3894 434640964 434641246 1.580000e-129 473.0
14 TraesCS1B01G256500 chr1A 81.982 222 24 9 4514 4721 136926485 136926704 1.800000e-39 174.0
15 TraesCS1B01G256500 chr5D 90.728 755 58 10 1 748 412714117 412713368 0.000000e+00 996.0
16 TraesCS1B01G256500 chr5D 90.106 758 62 10 1 749 271482164 271481411 0.000000e+00 972.0
17 TraesCS1B01G256500 chr5D 97.059 34 1 0 4738 4771 440317050 440317017 1.890000e-04 58.4
18 TraesCS1B01G256500 chr7B 90.327 765 60 13 1 754 623817305 623816544 0.000000e+00 990.0
19 TraesCS1B01G256500 chr7B 97.059 170 4 1 4352 4520 607493297 607493128 7.950000e-73 285.0
20 TraesCS1B01G256500 chr7B 82.353 153 18 8 4575 4721 696752218 696752069 1.840000e-24 124.0
21 TraesCS1B01G256500 chr7B 82.237 152 19 8 4575 4721 696758268 696758120 1.840000e-24 124.0
22 TraesCS1B01G256500 chr7B 82.639 144 18 7 4575 4713 696756251 696756110 2.370000e-23 121.0
23 TraesCS1B01G256500 chr7B 81.699 153 18 9 4575 4720 696750199 696750050 8.540000e-23 119.0
24 TraesCS1B01G256500 chr7B 81.699 153 19 8 4575 4721 696751210 696751061 8.540000e-23 119.0
25 TraesCS1B01G256500 chr7B 81.699 153 19 8 4575 4721 696754235 696754086 8.540000e-23 119.0
26 TraesCS1B01G256500 chr7B 81.699 153 19 8 4575 4721 696759277 696759128 8.540000e-23 119.0
27 TraesCS1B01G256500 chr7B 81.290 155 20 8 4573 4721 696755245 696755094 3.070000e-22 117.0
28 TraesCS1B01G256500 chr6D 90.263 760 58 13 1 750 58833717 58834470 0.000000e+00 979.0
29 TraesCS1B01G256500 chr6D 95.480 177 7 1 4348 4523 406391527 406391351 1.030000e-71 281.0
30 TraesCS1B01G256500 chr3D 90.212 756 61 12 3 749 607326641 607327392 0.000000e+00 974.0
31 TraesCS1B01G256500 chr4D 90.000 760 65 9 1 750 276857346 276858104 0.000000e+00 972.0
32 TraesCS1B01G256500 chr4D 94.180 189 8 3 4330 4517 477898979 477898793 7.950000e-73 285.0
33 TraesCS1B01G256500 chr4D 100.000 28 0 0 4516 4543 458940229 458940256 9.000000e-03 52.8
34 TraesCS1B01G256500 chr2D 89.318 777 70 12 1 767 575690878 575691651 0.000000e+00 963.0
35 TraesCS1B01G256500 chr7D 89.723 759 66 10 1 750 473577132 473577887 0.000000e+00 959.0
36 TraesCS1B01G256500 chr7D 89.683 756 68 9 1 750 108986867 108986116 0.000000e+00 955.0
37 TraesCS1B01G256500 chr7D 86.792 53 6 1 4514 4566 602724119 602724170 1.890000e-04 58.4
38 TraesCS1B01G256500 chr3A 89.339 741 55 8 1027 1761 298792047 298792769 0.000000e+00 909.0
39 TraesCS1B01G256500 chr4A 94.505 182 8 2 4352 4531 362068075 362067894 3.700000e-71 279.0
40 TraesCS1B01G256500 chr2B 95.000 180 5 3 4338 4514 127148060 127147882 3.700000e-71 279.0
41 TraesCS1B01G256500 chr2B 78.641 206 31 10 4578 4773 11463881 11463679 1.840000e-24 124.0
42 TraesCS1B01G256500 chr2B 78.155 206 31 11 4578 4773 12948155 12948356 8.540000e-23 119.0
43 TraesCS1B01G256500 chr6A 88.532 218 17 6 4301 4516 388055662 388055451 1.730000e-64 257.0
44 TraesCS1B01G256500 chr5A 79.412 204 35 6 4575 4771 464631101 464631304 2.360000e-28 137.0
45 TraesCS1B01G256500 chr5A 76.995 213 26 15 4580 4781 607838963 607838763 3.090000e-17 100.0
46 TraesCS1B01G256500 chr5A 81.928 83 10 5 4693 4771 556238972 556238891 1.130000e-06 65.8
47 TraesCS1B01G256500 chrUn 82.500 120 17 3 4231 4350 7507775 7507890 8.600000e-18 102.0
48 TraesCS1B01G256500 chr3B 82.353 102 14 4 4674 4771 699179133 699179234 8.660000e-13 86.1
49 TraesCS1B01G256500 chr7A 77.419 124 16 10 4231 4346 177093096 177093215 4.060000e-06 63.9
50 TraesCS1B01G256500 chr5B 94.595 37 2 0 4738 4774 535463305 535463269 1.890000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G256500 chr1B 452023047 452027902 4855 False 4152.500000 5978 100.000000 1 4856 2 chr1B.!!$F2 4855
1 TraesCS1B01G256500 chr1D 336341855 336345697 3842 False 1272.000000 3546 92.803000 856 4856 4 chr1D.!!$F3 4000
2 TraesCS1B01G256500 chr1A 434638577 434641649 3072 False 1504.333333 3509 94.701333 866 4237 3 chr1A.!!$F2 3371
3 TraesCS1B01G256500 chr5D 412713368 412714117 749 True 996.000000 996 90.728000 1 748 1 chr5D.!!$R2 747
4 TraesCS1B01G256500 chr5D 271481411 271482164 753 True 972.000000 972 90.106000 1 749 1 chr5D.!!$R1 748
5 TraesCS1B01G256500 chr7B 623816544 623817305 761 True 990.000000 990 90.327000 1 754 1 chr7B.!!$R2 753
6 TraesCS1B01G256500 chr6D 58833717 58834470 753 False 979.000000 979 90.263000 1 750 1 chr6D.!!$F1 749
7 TraesCS1B01G256500 chr3D 607326641 607327392 751 False 974.000000 974 90.212000 3 749 1 chr3D.!!$F1 746
8 TraesCS1B01G256500 chr4D 276857346 276858104 758 False 972.000000 972 90.000000 1 750 1 chr4D.!!$F1 749
9 TraesCS1B01G256500 chr2D 575690878 575691651 773 False 963.000000 963 89.318000 1 767 1 chr2D.!!$F1 766
10 TraesCS1B01G256500 chr7D 473577132 473577887 755 False 959.000000 959 89.723000 1 750 1 chr7D.!!$F1 749
11 TraesCS1B01G256500 chr7D 108986116 108986867 751 True 955.000000 955 89.683000 1 750 1 chr7D.!!$R1 749
12 TraesCS1B01G256500 chr3A 298792047 298792769 722 False 909.000000 909 89.339000 1027 1761 1 chr3A.!!$F1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 860 0.036010 ATTCCTGAGCACACTTCGGG 60.036 55.0 0.00 0.00 0.00 5.14 F
1371 1413 0.256752 AGTGCTCCCTATGCATTGCA 59.743 50.0 14.72 14.72 44.86 4.08 F
2515 2565 0.321564 CTGAACCAAGTCCGATGCCA 60.322 55.0 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2659 2709 1.156736 ACCTCGCACTTTTGAATCCG 58.843 50.0 0.00 0.0 0.00 4.18 R
3171 3222 1.176527 GTTGCATATGCCACCACTGT 58.823 50.0 24.54 0.0 41.18 3.55 R
3857 3908 0.391263 GGTCATTGTGGTCGGACTCC 60.391 60.0 8.23 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 2.104111 TCACCATTAAATCCCTCGCGAT 59.896 45.455 10.36 0.00 0.00 4.58
228 237 7.459795 TGATGTTTACACTGAAATTGCCATA 57.540 32.000 0.00 0.00 0.00 2.74
349 361 4.804868 TTGCCATGAACATGCACTTAAT 57.195 36.364 9.03 0.00 37.49 1.40
402 415 3.826524 TGGTCAAAGTACTGGAATTGCA 58.173 40.909 0.00 0.00 0.00 4.08
500 515 6.542370 GGCAACTATAGTGTAAACATCATGGT 59.458 38.462 6.06 0.00 0.00 3.55
518 533 5.762218 TCATGGTAACTTTTGGGCAAAATTG 59.238 36.000 0.00 0.00 39.29 2.32
545 562 9.462174 TTTTTCATCGAAACATATCAATATGGC 57.538 29.630 13.18 3.45 43.38 4.40
561 578 8.442632 TCAATATGGCTCTAGTTTTGAAGATG 57.557 34.615 0.00 0.00 0.00 2.90
562 579 6.874288 ATATGGCTCTAGTTTTGAAGATGC 57.126 37.500 0.00 0.00 0.00 3.91
565 582 2.223135 GCTCTAGTTTTGAAGATGCCGC 60.223 50.000 0.00 0.00 0.00 6.53
571 588 0.321210 TTTGAAGATGCCGCCGAGAA 60.321 50.000 0.00 0.00 0.00 2.87
582 599 2.561569 CCGCCGAGAAGGATTTAATGT 58.438 47.619 0.00 0.00 45.00 2.71
665 683 4.590222 ACCAAAAAGATTCCTGCTGATGTT 59.410 37.500 0.00 0.00 0.00 2.71
681 699 5.520288 GCTGATGTTATCTGTTCATACGTGT 59.480 40.000 0.00 0.00 0.00 4.49
706 724 1.775385 TGAGTGATGATGGAGGCGTA 58.225 50.000 0.00 0.00 0.00 4.42
819 837 5.695851 TTTTGGAAAGAGAGAACATGCTC 57.304 39.130 0.00 0.00 35.11 4.26
820 838 3.340814 TGGAAAGAGAGAACATGCTCC 57.659 47.619 0.00 0.00 35.49 4.70
821 839 2.909006 TGGAAAGAGAGAACATGCTCCT 59.091 45.455 0.00 0.00 35.49 3.69
822 840 3.269178 GGAAAGAGAGAACATGCTCCTG 58.731 50.000 0.00 0.00 35.49 3.86
823 841 3.055530 GGAAAGAGAGAACATGCTCCTGA 60.056 47.826 0.00 0.00 35.49 3.86
824 842 4.383989 GGAAAGAGAGAACATGCTCCTGAT 60.384 45.833 0.00 0.00 35.49 2.90
825 843 4.840716 AAGAGAGAACATGCTCCTGATT 57.159 40.909 0.00 0.00 35.49 2.57
826 844 4.405116 AGAGAGAACATGCTCCTGATTC 57.595 45.455 0.00 0.00 35.49 2.52
827 845 3.134442 AGAGAGAACATGCTCCTGATTCC 59.866 47.826 0.00 0.00 35.49 3.01
828 846 3.113824 AGAGAACATGCTCCTGATTCCT 58.886 45.455 0.00 0.00 35.49 3.36
829 847 3.118334 AGAGAACATGCTCCTGATTCCTG 60.118 47.826 0.00 0.00 35.49 3.86
830 848 2.842496 AGAACATGCTCCTGATTCCTGA 59.158 45.455 0.00 0.00 0.00 3.86
831 849 3.118334 AGAACATGCTCCTGATTCCTGAG 60.118 47.826 0.00 0.00 0.00 3.35
836 854 2.021355 CTCCTGATTCCTGAGCACAC 57.979 55.000 0.00 0.00 0.00 3.82
837 855 1.554160 CTCCTGATTCCTGAGCACACT 59.446 52.381 0.00 0.00 0.00 3.55
838 856 1.980765 TCCTGATTCCTGAGCACACTT 59.019 47.619 0.00 0.00 0.00 3.16
839 857 2.027745 TCCTGATTCCTGAGCACACTTC 60.028 50.000 0.00 0.00 0.00 3.01
840 858 1.998315 CTGATTCCTGAGCACACTTCG 59.002 52.381 0.00 0.00 0.00 3.79
841 859 1.338105 TGATTCCTGAGCACACTTCGG 60.338 52.381 0.00 0.00 0.00 4.30
842 860 0.036010 ATTCCTGAGCACACTTCGGG 60.036 55.000 0.00 0.00 0.00 5.14
843 861 2.731691 TTCCTGAGCACACTTCGGGC 62.732 60.000 0.00 0.00 0.00 6.13
844 862 3.114616 CTGAGCACACTTCGGGCG 61.115 66.667 0.00 0.00 0.00 6.13
845 863 3.865929 CTGAGCACACTTCGGGCGT 62.866 63.158 0.00 0.00 0.00 5.68
846 864 3.112709 GAGCACACTTCGGGCGTC 61.113 66.667 0.00 0.00 0.00 5.19
847 865 3.575351 GAGCACACTTCGGGCGTCT 62.575 63.158 0.00 0.00 0.00 4.18
848 866 3.414700 GCACACTTCGGGCGTCTG 61.415 66.667 0.00 0.00 0.00 3.51
849 867 2.338620 CACACTTCGGGCGTCTGA 59.661 61.111 0.00 0.00 0.00 3.27
850 868 1.300620 CACACTTCGGGCGTCTGAA 60.301 57.895 11.45 11.45 36.84 3.02
851 869 1.300697 ACACTTCGGGCGTCTGAAC 60.301 57.895 7.31 0.00 34.77 3.18
852 870 2.027625 CACTTCGGGCGTCTGAACC 61.028 63.158 7.31 0.00 34.77 3.62
853 871 2.434359 CTTCGGGCGTCTGAACCC 60.434 66.667 7.31 6.90 43.25 4.11
854 872 2.920912 TTCGGGCGTCTGAACCCT 60.921 61.111 7.31 0.00 44.63 4.34
876 894 3.764160 CTCTTCCGCCCCAGCATCC 62.764 68.421 0.00 0.00 39.83 3.51
962 980 1.620822 GAGCCATCCTCTCTCTCTCC 58.379 60.000 0.00 0.00 37.60 3.71
1303 1342 0.978146 ATGCAGCCGGTTCTAGTCCT 60.978 55.000 1.90 0.00 0.00 3.85
1312 1351 2.094649 CGGTTCTAGTCCTTCCACAGTC 60.095 54.545 0.00 0.00 0.00 3.51
1315 1354 3.527507 TCTAGTCCTTCCACAGTCACT 57.472 47.619 0.00 0.00 0.00 3.41
1370 1412 0.666913 CAGTGCTCCCTATGCATTGC 59.333 55.000 3.54 0.46 40.25 3.56
1371 1413 0.256752 AGTGCTCCCTATGCATTGCA 59.743 50.000 14.72 14.72 44.86 4.08
1550 1596 5.945191 TGATGATGCTTTACTTGGATCAACA 59.055 36.000 2.40 3.63 43.43 3.33
1553 1599 7.230849 TGATGCTTTACTTGGATCAACATTT 57.769 32.000 0.00 0.00 38.87 2.32
1576 1622 4.546829 ACAAGATTTACCCGTGAAGCTA 57.453 40.909 0.00 0.00 0.00 3.32
1577 1623 4.251268 ACAAGATTTACCCGTGAAGCTAC 58.749 43.478 0.00 0.00 0.00 3.58
1578 1624 4.020485 ACAAGATTTACCCGTGAAGCTACT 60.020 41.667 0.00 0.00 0.00 2.57
1579 1625 4.388378 AGATTTACCCGTGAAGCTACTC 57.612 45.455 0.00 0.00 0.00 2.59
1580 1626 4.024670 AGATTTACCCGTGAAGCTACTCT 58.975 43.478 0.00 0.00 0.00 3.24
1581 1627 5.198965 AGATTTACCCGTGAAGCTACTCTA 58.801 41.667 0.00 0.00 0.00 2.43
1582 1628 5.655532 AGATTTACCCGTGAAGCTACTCTAA 59.344 40.000 0.00 0.00 0.00 2.10
1583 1629 5.927281 TTTACCCGTGAAGCTACTCTAAT 57.073 39.130 0.00 0.00 0.00 1.73
1584 1630 5.511234 TTACCCGTGAAGCTACTCTAATC 57.489 43.478 0.00 0.00 0.00 1.75
1745 1791 3.243877 CCGTTGTAATCGAGCAGATGAAG 59.756 47.826 0.00 0.00 40.02 3.02
1756 1802 1.736681 GCAGATGAAGGAGAAGCACAC 59.263 52.381 0.00 0.00 0.00 3.82
1764 1810 1.338337 AGGAGAAGCACACGGATATCG 59.662 52.381 0.00 0.00 45.88 2.92
1949 1996 6.665992 ATCATCGACAAAGGTATAAGCCTA 57.334 37.500 0.00 0.00 38.03 3.93
2086 2135 7.706100 TTCTATTTACCATTGTACCAAACCC 57.294 36.000 0.00 0.00 0.00 4.11
2169 2219 6.839124 TCAACTTAAAATGATCAGGCATGT 57.161 33.333 0.09 0.00 0.00 3.21
2199 2249 9.727627 GATCTCATGGTACTGATTTTCATTTTC 57.272 33.333 0.00 0.00 0.00 2.29
2215 2265 8.877864 TTTCATTTTCCATATTCTAGTGTGGT 57.122 30.769 0.00 0.00 32.70 4.16
2304 2354 4.229304 TGTACGTGATTTGATCCCCAAT 57.771 40.909 0.00 0.00 34.23 3.16
2305 2355 3.944650 TGTACGTGATTTGATCCCCAATG 59.055 43.478 0.00 0.00 34.23 2.82
2474 2524 6.653020 TCTTTGACAGATAACATATGGTGCT 58.347 36.000 2.68 0.00 0.00 4.40
2486 2536 1.276622 ATGGTGCTCCTAAGGAACGT 58.723 50.000 6.34 0.00 32.16 3.99
2501 2551 2.795470 GGAACGTCTGACACTTCTGAAC 59.205 50.000 8.73 0.00 32.01 3.18
2515 2565 0.321564 CTGAACCAAGTCCGATGCCA 60.322 55.000 0.00 0.00 0.00 4.92
2556 2606 6.869421 ACATTATGCGTAAGTTTGAAATGC 57.131 33.333 4.43 0.00 41.68 3.56
2603 2653 5.631119 GCCCAAGTACCATTTCTACCATAT 58.369 41.667 0.00 0.00 0.00 1.78
2604 2654 6.068670 GCCCAAGTACCATTTCTACCATATT 58.931 40.000 0.00 0.00 0.00 1.28
2605 2655 7.228590 GCCCAAGTACCATTTCTACCATATTA 58.771 38.462 0.00 0.00 0.00 0.98
2606 2656 7.174426 GCCCAAGTACCATTTCTACCATATTAC 59.826 40.741 0.00 0.00 0.00 1.89
2607 2657 8.437575 CCCAAGTACCATTTCTACCATATTACT 58.562 37.037 0.00 0.00 0.00 2.24
2608 2658 9.490379 CCAAGTACCATTTCTACCATATTACTC 57.510 37.037 0.00 0.00 0.00 2.59
2659 2709 8.682710 TGATTTGCTTTATTATGTGGGAACTAC 58.317 33.333 0.00 0.00 0.00 2.73
2802 2852 6.711277 AGATATGAACAAAGGTTGCTACAGA 58.289 36.000 0.00 0.00 37.36 3.41
2813 2863 7.661536 AAGGTTGCTACAGACTGATTATAGA 57.338 36.000 10.08 0.00 0.00 1.98
2814 2864 7.283625 AGGTTGCTACAGACTGATTATAGAG 57.716 40.000 10.08 0.00 0.00 2.43
2862 2912 6.099701 GGGAGGGAATAAATTAGCACCATTTT 59.900 38.462 0.00 0.00 0.00 1.82
2884 2934 1.140312 TGGGAACTCATATGCCCCTC 58.860 55.000 12.18 0.91 39.93 4.30
3007 3058 4.988540 GCCAAAGACCAAAATACCTTGTTC 59.011 41.667 0.00 0.00 0.00 3.18
3097 3148 1.071987 CTGCCTGGTCTGTGCTTCA 59.928 57.895 0.00 0.00 0.00 3.02
3171 3222 5.011840 TCTGTTCCATTGAATTGCCATTGAA 59.988 36.000 0.00 0.00 31.98 2.69
3174 3225 4.823157 TCCATTGAATTGCCATTGAACAG 58.177 39.130 0.00 0.00 0.00 3.16
3711 3762 1.202222 GCCATGATGGAGAAAGTTGCG 60.202 52.381 17.22 0.00 40.96 4.85
3804 3855 8.870879 GTTTGTTACAAGTCAGATATAGTGACC 58.129 37.037 12.17 0.54 44.65 4.02
3813 3864 8.330466 AGTCAGATATAGTGACCGAAGATAAG 57.670 38.462 12.17 0.00 44.65 1.73
3844 3895 2.651455 CTGGTCAAGATGATGCCATGT 58.349 47.619 0.00 0.00 32.09 3.21
3857 3908 8.141909 AGATGATGCCATGTCTTCATTTTAATG 58.858 33.333 6.58 0.00 32.94 1.90
3884 3935 3.437395 CCGACCACAATGACCGAATTAAA 59.563 43.478 0.00 0.00 0.00 1.52
3889 3940 8.552865 CGACCACAATGACCGAATTAAATATTA 58.447 33.333 0.00 0.00 0.00 0.98
3943 4050 1.032794 ATTATCTGGCGCGAGTGAGA 58.967 50.000 19.32 4.61 0.00 3.27
3970 4077 2.165437 GTGTGCTTTGTGGAAGTTGGAA 59.835 45.455 0.00 0.00 37.69 3.53
4018 4126 7.010552 GTGTGTTTCTATCTGCCATACTTAGTG 59.989 40.741 0.00 0.00 0.00 2.74
4091 4199 7.119116 TCGTTTCTCTGCAAGCTTTAATTGATA 59.881 33.333 0.00 0.00 0.00 2.15
4141 4252 6.151648 GCCAATATGCATCATAAGCCTTCTTA 59.848 38.462 0.19 0.00 38.97 2.10
4186 4297 7.136772 ACTCTTTTTGTTCCGTTTTATAGTGC 58.863 34.615 0.00 0.00 0.00 4.40
4190 4301 5.514059 TTGTTCCGTTTTATAGTGCGTAC 57.486 39.130 0.00 0.00 0.00 3.67
4264 4375 2.735772 GCTCTCGGGCTCCATGGAA 61.736 63.158 17.00 0.00 0.00 3.53
4272 4383 1.342374 GGGCTCCATGGAACCTGAAAT 60.342 52.381 29.08 0.00 31.46 2.17
4280 4391 6.287525 TCCATGGAACCTGAAATTTTCAAAC 58.712 36.000 13.46 5.10 39.58 2.93
4285 4396 7.390027 TGGAACCTGAAATTTTCAAACTTTCA 58.610 30.769 13.35 13.35 39.58 2.69
4287 4398 8.726068 GGAACCTGAAATTTTCAAACTTTCAAA 58.274 29.630 14.53 0.00 38.15 2.69
4327 4438 9.814899 TGCTTCAAAAGAATCTGAAAATAAACA 57.185 25.926 0.00 0.00 31.41 2.83
4350 4461 9.884636 AACACACAAGTACTTATAGATGCATAA 57.115 29.630 8.04 0.00 0.00 1.90
4358 4469 9.998752 AGTACTTATAGATGCATAATACTCCCT 57.001 33.333 0.00 0.00 0.00 4.20
4360 4471 8.312669 ACTTATAGATGCATAATACTCCCTCC 57.687 38.462 0.00 0.00 0.00 4.30
4361 4472 5.860941 ATAGATGCATAATACTCCCTCCG 57.139 43.478 0.00 0.00 0.00 4.63
4362 4473 3.511477 AGATGCATAATACTCCCTCCGT 58.489 45.455 0.00 0.00 0.00 4.69
4363 4474 3.904339 AGATGCATAATACTCCCTCCGTT 59.096 43.478 0.00 0.00 0.00 4.44
4364 4475 3.746045 TGCATAATACTCCCTCCGTTC 57.254 47.619 0.00 0.00 0.00 3.95
4365 4476 2.367567 TGCATAATACTCCCTCCGTTCC 59.632 50.000 0.00 0.00 0.00 3.62
4366 4477 2.633481 GCATAATACTCCCTCCGTTCCT 59.367 50.000 0.00 0.00 0.00 3.36
4367 4478 3.830755 GCATAATACTCCCTCCGTTCCTA 59.169 47.826 0.00 0.00 0.00 2.94
4368 4479 4.282703 GCATAATACTCCCTCCGTTCCTAA 59.717 45.833 0.00 0.00 0.00 2.69
4369 4480 5.221581 GCATAATACTCCCTCCGTTCCTAAA 60.222 44.000 0.00 0.00 0.00 1.85
4370 4481 6.520231 GCATAATACTCCCTCCGTTCCTAAAT 60.520 42.308 0.00 0.00 0.00 1.40
4371 4482 7.310237 GCATAATACTCCCTCCGTTCCTAAATA 60.310 40.741 0.00 0.00 0.00 1.40
4372 4483 8.759782 CATAATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
4373 4484 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
4374 4485 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4375 4486 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4376 4487 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4377 4488 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4378 4489 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4379 4490 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4380 4491 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4381 4492 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
4382 4493 8.182227 CCTCCGTTCCTAAATATTTGTCTTTTC 58.818 37.037 11.05 0.00 0.00 2.29
4383 4494 8.624367 TCCGTTCCTAAATATTTGTCTTTTCA 57.376 30.769 11.05 0.00 0.00 2.69
4384 4495 8.726988 TCCGTTCCTAAATATTTGTCTTTTCAG 58.273 33.333 11.05 0.00 0.00 3.02
4385 4496 8.726988 CCGTTCCTAAATATTTGTCTTTTCAGA 58.273 33.333 11.05 0.00 0.00 3.27
4386 4497 9.760660 CGTTCCTAAATATTTGTCTTTTCAGAG 57.239 33.333 11.05 0.00 0.00 3.35
4397 4508 7.822161 TTGTCTTTTCAGAGATTCAAATGGA 57.178 32.000 0.00 0.00 0.00 3.41
4398 4509 7.206981 TGTCTTTTCAGAGATTCAAATGGAC 57.793 36.000 0.00 0.00 0.00 4.02
4399 4510 7.000472 TGTCTTTTCAGAGATTCAAATGGACT 59.000 34.615 0.00 0.00 0.00 3.85
4400 4511 8.156820 TGTCTTTTCAGAGATTCAAATGGACTA 58.843 33.333 0.00 0.00 0.00 2.59
4401 4512 8.447053 GTCTTTTCAGAGATTCAAATGGACTAC 58.553 37.037 0.00 0.00 0.00 2.73
4402 4513 8.378565 TCTTTTCAGAGATTCAAATGGACTACT 58.621 33.333 0.00 0.00 0.00 2.57
4403 4514 9.658799 CTTTTCAGAGATTCAAATGGACTACTA 57.341 33.333 0.00 0.00 0.00 1.82
4404 4515 9.436957 TTTTCAGAGATTCAAATGGACTACTAC 57.563 33.333 0.00 0.00 0.00 2.73
4405 4516 7.718334 TCAGAGATTCAAATGGACTACTACA 57.282 36.000 0.00 0.00 0.00 2.74
4406 4517 8.311395 TCAGAGATTCAAATGGACTACTACAT 57.689 34.615 0.00 0.00 0.00 2.29
4407 4518 9.421399 TCAGAGATTCAAATGGACTACTACATA 57.579 33.333 0.00 0.00 0.00 2.29
4408 4519 9.469807 CAGAGATTCAAATGGACTACTACATAC 57.530 37.037 0.00 0.00 0.00 2.39
4409 4520 8.353684 AGAGATTCAAATGGACTACTACATACG 58.646 37.037 0.00 0.00 0.00 3.06
4410 4521 7.434492 AGATTCAAATGGACTACTACATACGG 58.566 38.462 0.00 0.00 0.00 4.02
4411 4522 6.778834 TTCAAATGGACTACTACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
4412 4523 6.971726 TCAAATGGACTACTACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
4413 4524 6.745116 TCAAATGGACTACTACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
4415 4526 7.503230 TCAAATGGACTACTACATACGGATGTA 59.497 37.037 19.32 19.32 44.77 2.29
4416 4527 8.304596 CAAATGGACTACTACATACGGATGTAT 58.695 37.037 20.64 13.02 45.42 2.29
4417 4528 9.524496 AAATGGACTACTACATACGGATGTATA 57.476 33.333 20.64 13.41 45.42 1.47
4418 4529 9.696572 AATGGACTACTACATACGGATGTATAT 57.303 33.333 20.64 14.14 45.42 0.86
4420 4531 9.828039 TGGACTACTACATACGGATGTATATAG 57.172 37.037 24.59 24.59 45.42 1.31
4454 4565 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
4455 4566 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
4456 4567 7.828223 AGAATGTAGATTCACTCATTTTGCTCT 59.172 33.333 14.46 0.00 40.59 4.09
4457 4568 6.732531 TGTAGATTCACTCATTTTGCTCTG 57.267 37.500 0.00 0.00 0.00 3.35
4458 4569 6.233434 TGTAGATTCACTCATTTTGCTCTGT 58.767 36.000 0.00 0.00 0.00 3.41
4459 4570 7.386059 TGTAGATTCACTCATTTTGCTCTGTA 58.614 34.615 0.00 0.00 0.00 2.74
4460 4571 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
4461 4572 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
4462 4573 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
4463 4574 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
4464 4575 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
4465 4576 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
4466 4577 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
4467 4578 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
4468 4579 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
4469 4580 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
4470 4581 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
4471 4582 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
4472 4583 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
4473 4584 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
4474 4585 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
4475 4586 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
4476 4587 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
4477 4588 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
4478 4589 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
4479 4590 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
4480 4591 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
4481 4592 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
4482 4593 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
4483 4594 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4484 4595 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4485 4596 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4486 4597 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4487 4598 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4488 4599 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4489 4600 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4490 4601 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4491 4602 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4492 4603 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4493 4604 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4506 4617 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4507 4618 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4508 4619 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4509 4620 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4510 4621 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4511 4622 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4557 4668 8.908678 CATTATGAAATATGTTTTGATGCGAGG 58.091 33.333 0.00 0.00 0.00 4.63
4657 4782 6.978343 TGTATTTCTCCATGAAACCTTACG 57.022 37.500 0.00 0.00 46.08 3.18
4663 4788 3.670625 TCCATGAAACCTTACGGACAAG 58.329 45.455 0.00 0.00 0.00 3.16
4771 4896 5.993106 GCTCGAGCTCCATTAGTAATTTT 57.007 39.130 29.88 0.00 38.21 1.82
4772 4897 5.980025 GCTCGAGCTCCATTAGTAATTTTC 58.020 41.667 29.88 0.00 38.21 2.29
4782 4907 5.051774 CCATTAGTAATTTTCGGCATTTGCG 60.052 40.000 0.00 0.00 43.26 4.85
4784 4909 2.230266 AGTAATTTTCGGCATTTGCGGT 59.770 40.909 9.52 0.00 43.26 5.68
4785 4910 1.427435 AATTTTCGGCATTTGCGGTG 58.573 45.000 9.52 0.00 43.26 4.94
4789 4914 1.643868 TTCGGCATTTGCGGTGCTAG 61.644 55.000 9.52 0.00 42.16 3.42
4794 4919 1.981254 CATTTGCGGTGCTAGTTTGG 58.019 50.000 0.00 0.00 0.00 3.28
4801 4926 2.223618 GCGGTGCTAGTTTGGACAAAAA 60.224 45.455 0.00 0.00 31.33 1.94
4805 4930 4.982295 GGTGCTAGTTTGGACAAAAATGAC 59.018 41.667 0.00 0.00 31.33 3.06
4806 4931 4.982295 GTGCTAGTTTGGACAAAAATGACC 59.018 41.667 0.00 0.00 31.33 4.02
4832 4960 2.667470 CTGGAATCGGAGGAGTTAGGA 58.333 52.381 0.00 0.00 0.00 2.94
4833 4961 2.362717 CTGGAATCGGAGGAGTTAGGAC 59.637 54.545 0.00 0.00 0.00 3.85
4838 4966 2.933573 TCGGAGGAGTTAGGACATCTC 58.066 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 156 7.808381 TGACAACTTTTAACAAAAACATCGTCA 59.192 29.630 0.00 0.00 0.00 4.35
483 498 8.788806 CCAAAAGTTACCATGATGTTTACACTA 58.211 33.333 0.00 0.00 0.00 2.74
500 515 8.110860 TGAAAAACAATTTTGCCCAAAAGTTA 57.889 26.923 11.32 0.00 42.72 2.24
540 556 5.126067 GGCATCTTCAAAACTAGAGCCATA 58.874 41.667 0.00 0.00 39.35 2.74
545 562 2.352960 GGCGGCATCTTCAAAACTAGAG 59.647 50.000 3.07 0.00 0.00 2.43
561 578 1.264288 CATTAAATCCTTCTCGGCGGC 59.736 52.381 7.21 0.00 0.00 6.53
562 579 2.561569 ACATTAAATCCTTCTCGGCGG 58.438 47.619 7.21 0.00 0.00 6.13
565 582 7.367285 TGTTTTCAACATTAAATCCTTCTCGG 58.633 34.615 0.00 0.00 36.25 4.63
635 653 4.388485 CAGGAATCTTTTTGGTTTTGGGG 58.612 43.478 0.00 0.00 0.00 4.96
638 656 5.358922 TCAGCAGGAATCTTTTTGGTTTTG 58.641 37.500 0.00 0.00 0.00 2.44
665 683 7.817478 ACTCATTTTGACACGTATGAACAGATA 59.183 33.333 0.00 0.00 0.00 1.98
681 699 3.949754 GCCTCCATCATCACTCATTTTGA 59.050 43.478 0.00 0.00 0.00 2.69
706 724 1.108776 GCATCTTGCACATCACCCAT 58.891 50.000 0.00 0.00 44.26 4.00
796 814 5.010012 GGAGCATGTTCTCTCTTTCCAAAAA 59.990 40.000 9.57 0.00 33.70 1.94
797 815 4.520492 GGAGCATGTTCTCTCTTTCCAAAA 59.480 41.667 9.57 0.00 33.70 2.44
798 816 4.074970 GGAGCATGTTCTCTCTTTCCAAA 58.925 43.478 9.57 0.00 33.70 3.28
799 817 3.328931 AGGAGCATGTTCTCTCTTTCCAA 59.671 43.478 9.57 0.00 33.70 3.53
800 818 2.909006 AGGAGCATGTTCTCTCTTTCCA 59.091 45.455 9.57 0.00 33.70 3.53
801 819 3.055530 TCAGGAGCATGTTCTCTCTTTCC 60.056 47.826 9.57 0.00 33.70 3.13
802 820 4.199432 TCAGGAGCATGTTCTCTCTTTC 57.801 45.455 9.57 0.00 33.70 2.62
803 821 4.840716 ATCAGGAGCATGTTCTCTCTTT 57.159 40.909 9.57 0.00 33.70 2.52
804 822 4.383989 GGAATCAGGAGCATGTTCTCTCTT 60.384 45.833 9.57 0.00 33.70 2.85
805 823 3.134442 GGAATCAGGAGCATGTTCTCTCT 59.866 47.826 9.57 0.00 33.70 3.10
806 824 3.134442 AGGAATCAGGAGCATGTTCTCTC 59.866 47.826 9.57 0.00 33.70 3.20
807 825 3.113824 AGGAATCAGGAGCATGTTCTCT 58.886 45.455 9.57 2.43 33.70 3.10
808 826 3.118482 TCAGGAATCAGGAGCATGTTCTC 60.118 47.826 9.57 0.65 0.00 2.87
809 827 2.842496 TCAGGAATCAGGAGCATGTTCT 59.158 45.455 9.57 0.00 0.00 3.01
810 828 3.204526 CTCAGGAATCAGGAGCATGTTC 58.795 50.000 0.04 0.04 0.00 3.18
811 829 3.278668 CTCAGGAATCAGGAGCATGTT 57.721 47.619 0.00 0.00 0.00 2.71
817 835 1.554160 AGTGTGCTCAGGAATCAGGAG 59.446 52.381 0.00 0.00 0.00 3.69
818 836 1.649321 AGTGTGCTCAGGAATCAGGA 58.351 50.000 0.00 0.00 0.00 3.86
819 837 2.354259 GAAGTGTGCTCAGGAATCAGG 58.646 52.381 0.00 0.00 0.00 3.86
820 838 1.998315 CGAAGTGTGCTCAGGAATCAG 59.002 52.381 0.00 0.00 0.00 2.90
821 839 1.338105 CCGAAGTGTGCTCAGGAATCA 60.338 52.381 0.00 0.00 0.00 2.57
822 840 1.363744 CCGAAGTGTGCTCAGGAATC 58.636 55.000 0.00 0.00 0.00 2.52
823 841 0.036010 CCCGAAGTGTGCTCAGGAAT 60.036 55.000 0.00 0.00 0.00 3.01
824 842 1.371183 CCCGAAGTGTGCTCAGGAA 59.629 57.895 0.00 0.00 0.00 3.36
825 843 3.059982 CCCGAAGTGTGCTCAGGA 58.940 61.111 0.00 0.00 0.00 3.86
826 844 2.743928 GCCCGAAGTGTGCTCAGG 60.744 66.667 0.00 0.00 0.00 3.86
827 845 3.114616 CGCCCGAAGTGTGCTCAG 61.115 66.667 0.00 0.00 0.00 3.35
828 846 3.858868 GACGCCCGAAGTGTGCTCA 62.859 63.158 0.00 0.00 40.03 4.26
829 847 3.112709 GACGCCCGAAGTGTGCTC 61.113 66.667 0.00 0.00 40.03 4.26
830 848 3.616721 AGACGCCCGAAGTGTGCT 61.617 61.111 0.00 0.00 40.03 4.40
831 849 3.414700 CAGACGCCCGAAGTGTGC 61.415 66.667 0.00 0.00 40.03 4.57
832 850 1.300620 TTCAGACGCCCGAAGTGTG 60.301 57.895 0.00 0.00 40.03 3.82
833 851 1.300697 GTTCAGACGCCCGAAGTGT 60.301 57.895 0.00 0.00 43.60 3.55
834 852 2.027625 GGTTCAGACGCCCGAAGTG 61.028 63.158 0.00 0.00 0.00 3.16
835 853 2.342648 GGTTCAGACGCCCGAAGT 59.657 61.111 0.00 0.00 0.00 3.01
836 854 2.434359 GGGTTCAGACGCCCGAAG 60.434 66.667 0.00 0.00 34.90 3.79
840 858 1.079057 GAAGAGGGTTCAGACGCCC 60.079 63.158 1.61 1.61 45.16 6.13
841 859 0.108567 GAGAAGAGGGTTCAGACGCC 60.109 60.000 0.00 0.00 39.38 5.68
842 860 0.892063 AGAGAAGAGGGTTCAGACGC 59.108 55.000 0.00 0.00 38.89 5.19
843 861 2.094442 GGAAGAGAAGAGGGTTCAGACG 60.094 54.545 0.00 0.00 0.00 4.18
844 862 2.094442 CGGAAGAGAAGAGGGTTCAGAC 60.094 54.545 0.00 0.00 0.00 3.51
845 863 2.171840 CGGAAGAGAAGAGGGTTCAGA 58.828 52.381 0.00 0.00 0.00 3.27
846 864 1.404851 GCGGAAGAGAAGAGGGTTCAG 60.405 57.143 0.00 0.00 0.00 3.02
847 865 0.608640 GCGGAAGAGAAGAGGGTTCA 59.391 55.000 0.00 0.00 0.00 3.18
848 866 0.108089 GGCGGAAGAGAAGAGGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
849 867 1.554583 GGGCGGAAGAGAAGAGGGTT 61.555 60.000 0.00 0.00 0.00 4.11
850 868 1.990614 GGGCGGAAGAGAAGAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
851 869 2.736826 GGGGCGGAAGAGAAGAGGG 61.737 68.421 0.00 0.00 0.00 4.30
852 870 1.965754 CTGGGGCGGAAGAGAAGAGG 61.966 65.000 0.00 0.00 0.00 3.69
853 871 1.519719 CTGGGGCGGAAGAGAAGAG 59.480 63.158 0.00 0.00 0.00 2.85
854 872 2.660064 GCTGGGGCGGAAGAGAAGA 61.660 63.158 0.00 0.00 0.00 2.87
987 1007 0.539051 CGCCCATCTCTGGTCTCTTT 59.461 55.000 0.00 0.00 41.37 2.52
988 1008 1.333636 CCGCCCATCTCTGGTCTCTT 61.334 60.000 0.00 0.00 41.37 2.85
1303 1342 0.473755 ATGCACCAGTGACTGTGGAA 59.526 50.000 12.15 0.00 38.57 3.53
1312 1351 3.003394 TCCAATCCTAATGCACCAGTG 57.997 47.619 0.00 0.00 0.00 3.66
1315 1354 4.161942 CCAATTTCCAATCCTAATGCACCA 59.838 41.667 0.00 0.00 0.00 4.17
1550 1596 6.433093 AGCTTCACGGGTAAATCTTGTAAAAT 59.567 34.615 0.00 0.00 0.00 1.82
1553 1599 4.901868 AGCTTCACGGGTAAATCTTGTAA 58.098 39.130 0.00 0.00 0.00 2.41
1576 1622 8.760980 ATCTAACAACAGAGCTAGATTAGAGT 57.239 34.615 0.00 0.00 32.38 3.24
1607 1653 5.163343 ACTGGGCACTACATACACGATAAAT 60.163 40.000 0.00 0.00 0.00 1.40
1623 1669 2.362077 AGAACAACATCAAACTGGGCAC 59.638 45.455 0.00 0.00 0.00 5.01
1624 1670 2.665165 AGAACAACATCAAACTGGGCA 58.335 42.857 0.00 0.00 0.00 5.36
1745 1791 1.772182 CGATATCCGTGTGCTTCTCC 58.228 55.000 0.00 0.00 0.00 3.71
1756 1802 2.134201 TGTAAGCTGTGCGATATCCG 57.866 50.000 0.00 0.00 42.21 4.18
1764 1810 5.061311 CAGCAAAAATACATGTAAGCTGTGC 59.939 40.000 24.21 21.08 42.25 4.57
1949 1996 7.386025 GTGCTTTCCAAAAAGATATGAAGCTTT 59.614 33.333 0.00 0.00 43.00 3.51
1961 2008 7.951530 AACATATCAAGTGCTTTCCAAAAAG 57.048 32.000 0.00 0.00 43.99 2.27
1967 2014 8.462016 ACTTATGAAACATATCAAGTGCTTTCC 58.538 33.333 0.00 0.00 32.06 3.13
2053 2102 7.480760 ACAATGGTAAATAGAATGGCAAAGT 57.519 32.000 0.00 0.00 0.00 2.66
2086 2135 5.006386 AGCATCCAAAGTTCCTACAGAAAG 58.994 41.667 0.00 0.00 35.85 2.62
2123 2172 3.446310 TGTAGTTTGCTGAACGACAGA 57.554 42.857 15.73 2.10 45.15 3.41
2199 2249 5.410746 GCATCATCACCACACTAGAATATGG 59.589 44.000 0.00 0.67 38.26 2.74
2233 2283 4.142816 ACTTCTGCTAGCATTTTGTAAGCG 60.143 41.667 19.72 2.14 35.95 4.68
2304 2354 7.595819 AATTGAAAACAACTAAGGACATCCA 57.404 32.000 0.00 0.00 38.89 3.41
2305 2355 9.974980 TTTAATTGAAAACAACTAAGGACATCC 57.025 29.630 0.00 0.00 0.00 3.51
2431 2481 8.663911 GTCAAAGAAAGTCATCTCTCCATAAAG 58.336 37.037 0.00 0.00 0.00 1.85
2438 2488 8.868916 GTTATCTGTCAAAGAAAGTCATCTCTC 58.131 37.037 0.00 0.00 38.79 3.20
2445 2495 9.167311 ACCATATGTTATCTGTCAAAGAAAGTC 57.833 33.333 1.24 0.00 38.79 3.01
2474 2524 2.872732 AGTGTCAGACGTTCCTTAGGA 58.127 47.619 0.00 0.00 0.00 2.94
2486 2536 3.181465 GGACTTGGTTCAGAAGTGTCAGA 60.181 47.826 0.00 0.00 33.71 3.27
2501 2551 1.386525 CCCAATGGCATCGGACTTGG 61.387 60.000 5.89 7.18 36.85 3.61
2515 2565 7.631377 GCATAATGTAAAGCTCAACTTCCCAAT 60.631 37.037 0.00 0.00 37.75 3.16
2556 2606 2.523325 TCTTCAGAGTGAGGAGAGGG 57.477 55.000 0.00 0.00 28.76 4.30
2659 2709 1.156736 ACCTCGCACTTTTGAATCCG 58.843 50.000 0.00 0.00 0.00 4.18
2780 2830 6.372659 CAGTCTGTAGCAACCTTTGTTCATAT 59.627 38.462 0.00 0.00 30.42 1.78
2787 2837 6.992063 ATAATCAGTCTGTAGCAACCTTTG 57.008 37.500 0.00 0.00 0.00 2.77
2788 2838 8.079211 TCTATAATCAGTCTGTAGCAACCTTT 57.921 34.615 0.00 0.00 0.00 3.11
2791 2841 5.923684 GCTCTATAATCAGTCTGTAGCAACC 59.076 44.000 0.00 0.00 0.00 3.77
2802 2852 7.712639 CCAGTAACATTGTGCTCTATAATCAGT 59.287 37.037 0.00 0.00 0.00 3.41
2813 2863 2.969821 TTCCCCAGTAACATTGTGCT 57.030 45.000 0.00 0.00 0.00 4.40
2814 2864 3.356290 AGATTCCCCAGTAACATTGTGC 58.644 45.455 0.00 0.00 0.00 4.57
2862 2912 3.330701 GAGGGGCATATGAGTTCCCAATA 59.669 47.826 19.22 0.00 40.53 1.90
2884 2934 7.018635 AGATCCAAACATTTTGCAAACAAAG 57.981 32.000 12.39 4.67 46.08 2.77
3007 3058 1.204704 TGAGGCACTGACTAACCATCG 59.795 52.381 0.00 0.00 41.55 3.84
3097 3148 4.592192 CGGCGTGATCGAGGGCAT 62.592 66.667 0.00 0.00 39.71 4.40
3164 3215 1.259609 ATGCCACCACTGTTCAATGG 58.740 50.000 0.00 0.00 42.13 3.16
3171 3222 1.176527 GTTGCATATGCCACCACTGT 58.823 50.000 24.54 0.00 41.18 3.55
3174 3225 1.271934 TGTTGTTGCATATGCCACCAC 59.728 47.619 24.57 23.34 41.18 4.16
3596 3647 4.280425 TCAAGGTCTATGCAATGCAACAAA 59.720 37.500 13.45 0.00 43.62 2.83
3597 3648 3.825585 TCAAGGTCTATGCAATGCAACAA 59.174 39.130 13.45 0.00 43.62 2.83
3598 3649 3.191162 GTCAAGGTCTATGCAATGCAACA 59.809 43.478 13.45 1.98 43.62 3.33
3599 3650 3.191162 TGTCAAGGTCTATGCAATGCAAC 59.809 43.478 13.45 5.94 43.62 4.17
3600 3651 3.419943 TGTCAAGGTCTATGCAATGCAA 58.580 40.909 13.45 0.73 43.62 4.08
3601 3652 3.070476 TGTCAAGGTCTATGCAATGCA 57.930 42.857 11.44 11.44 44.86 3.96
3602 3653 4.142315 ACAATGTCAAGGTCTATGCAATGC 60.142 41.667 0.00 0.00 0.00 3.56
3603 3654 5.571784 ACAATGTCAAGGTCTATGCAATG 57.428 39.130 0.00 0.00 0.00 2.82
3604 3655 7.228108 CAGATACAATGTCAAGGTCTATGCAAT 59.772 37.037 0.00 0.00 0.00 3.56
3605 3656 6.539826 CAGATACAATGTCAAGGTCTATGCAA 59.460 38.462 0.00 0.00 0.00 4.08
3606 3657 6.051074 CAGATACAATGTCAAGGTCTATGCA 58.949 40.000 0.00 0.00 0.00 3.96
3607 3658 6.051717 ACAGATACAATGTCAAGGTCTATGC 58.948 40.000 0.00 0.00 0.00 3.14
3608 3659 7.984050 AGAACAGATACAATGTCAAGGTCTATG 59.016 37.037 0.00 0.00 0.00 2.23
3609 3660 8.083828 AGAACAGATACAATGTCAAGGTCTAT 57.916 34.615 0.00 0.00 0.00 1.98
3610 3661 7.482169 AGAACAGATACAATGTCAAGGTCTA 57.518 36.000 0.00 0.00 0.00 2.59
3711 3762 1.303561 TTGGCCATCCACTGTCAGC 60.304 57.895 6.09 0.00 43.33 4.26
3804 3855 3.310774 CAGCAACCATGGACTTATCTTCG 59.689 47.826 21.47 0.00 0.00 3.79
3813 3864 0.883833 CTTGACCAGCAACCATGGAC 59.116 55.000 21.47 7.45 40.51 4.02
3844 3895 5.183228 GGTCGGACTCCATTAAAATGAAGA 58.817 41.667 8.23 0.00 38.70 2.87
3857 3908 0.391263 GGTCATTGTGGTCGGACTCC 60.391 60.000 8.23 0.00 0.00 3.85
3889 3940 6.460953 GGGTATGCGTTTTCATAATCAATGGT 60.461 38.462 0.00 0.00 36.15 3.55
3935 4040 1.472082 AGCACACTCATCTCTCACTCG 59.528 52.381 0.00 0.00 0.00 4.18
3943 4050 2.936919 TCCACAAAGCACACTCATCT 57.063 45.000 0.00 0.00 0.00 2.90
3989 4096 6.418101 AGTATGGCAGATAGAAACACACAAT 58.582 36.000 0.00 0.00 0.00 2.71
4018 4126 4.810191 ATAGAACTCCACAGGTTCACTC 57.190 45.455 8.86 0.00 43.67 3.51
4091 4199 9.019764 GCTCAAAACAATGCAAATATAATACGT 57.980 29.630 0.00 0.00 0.00 3.57
4163 4274 6.137415 CGCACTATAAAACGGAACAAAAAGA 58.863 36.000 0.00 0.00 0.00 2.52
4164 4275 5.910723 ACGCACTATAAAACGGAACAAAAAG 59.089 36.000 0.00 0.00 0.00 2.27
4240 4351 1.303317 GGAGCCCGAGAGCCAAAAA 60.303 57.895 0.00 0.00 0.00 1.94
4272 4383 9.688592 ACAATTTGCATTTTGAAAGTTTGAAAA 57.311 22.222 14.09 14.09 0.00 2.29
4280 4391 9.109533 GAAGCATAACAATTTGCATTTTGAAAG 57.890 29.630 14.14 4.60 41.35 2.62
4285 4396 9.453325 CTTTTGAAGCATAACAATTTGCATTTT 57.547 25.926 2.88 0.00 41.35 1.82
4287 4398 8.380743 TCTTTTGAAGCATAACAATTTGCATT 57.619 26.923 2.88 0.00 41.35 3.56
4301 4412 9.814899 TGTTTATTTTCAGATTCTTTTGAAGCA 57.185 25.926 0.00 0.00 46.35 3.91
4346 4457 6.415206 TTTAGGAACGGAGGGAGTATTATG 57.585 41.667 0.00 0.00 0.00 1.90
4350 4461 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
4351 4462 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4352 4463 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4353 4464 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4354 4465 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4355 4466 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4356 4467 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
4357 4468 8.726988 TGAAAAGACAAATATTTAGGAACGGAG 58.273 33.333 0.00 0.00 0.00 4.63
4358 4469 8.624367 TGAAAAGACAAATATTTAGGAACGGA 57.376 30.769 0.00 0.00 0.00 4.69
4359 4470 8.726988 TCTGAAAAGACAAATATTTAGGAACGG 58.273 33.333 0.00 0.00 0.00 4.44
4360 4471 9.760660 CTCTGAAAAGACAAATATTTAGGAACG 57.239 33.333 0.00 0.00 0.00 3.95
4371 4482 8.863086 TCCATTTGAATCTCTGAAAAGACAAAT 58.137 29.630 0.00 0.00 34.68 2.32
4372 4483 8.137437 GTCCATTTGAATCTCTGAAAAGACAAA 58.863 33.333 0.00 0.00 30.50 2.83
4373 4484 7.503566 AGTCCATTTGAATCTCTGAAAAGACAA 59.496 33.333 0.00 0.00 0.00 3.18
4374 4485 7.000472 AGTCCATTTGAATCTCTGAAAAGACA 59.000 34.615 0.00 0.00 0.00 3.41
4375 4486 7.446001 AGTCCATTTGAATCTCTGAAAAGAC 57.554 36.000 0.00 0.00 0.00 3.01
4376 4487 8.378565 AGTAGTCCATTTGAATCTCTGAAAAGA 58.621 33.333 0.00 0.00 0.00 2.52
4377 4488 8.558973 AGTAGTCCATTTGAATCTCTGAAAAG 57.441 34.615 0.00 0.00 0.00 2.27
4378 4489 9.436957 GTAGTAGTCCATTTGAATCTCTGAAAA 57.563 33.333 0.00 0.00 0.00 2.29
4379 4490 8.593679 TGTAGTAGTCCATTTGAATCTCTGAAA 58.406 33.333 0.00 0.00 0.00 2.69
4380 4491 8.134202 TGTAGTAGTCCATTTGAATCTCTGAA 57.866 34.615 0.00 0.00 0.00 3.02
4381 4492 7.718334 TGTAGTAGTCCATTTGAATCTCTGA 57.282 36.000 0.00 0.00 0.00 3.27
4382 4493 9.469807 GTATGTAGTAGTCCATTTGAATCTCTG 57.530 37.037 0.00 0.00 0.00 3.35
4383 4494 8.353684 CGTATGTAGTAGTCCATTTGAATCTCT 58.646 37.037 0.00 0.00 0.00 3.10
4384 4495 7.595502 CCGTATGTAGTAGTCCATTTGAATCTC 59.404 40.741 0.00 0.00 0.00 2.75
4385 4496 7.287005 TCCGTATGTAGTAGTCCATTTGAATCT 59.713 37.037 0.00 0.00 0.00 2.40
4386 4497 7.431249 TCCGTATGTAGTAGTCCATTTGAATC 58.569 38.462 0.00 0.00 0.00 2.52
4387 4498 7.356089 TCCGTATGTAGTAGTCCATTTGAAT 57.644 36.000 0.00 0.00 0.00 2.57
4388 4499 6.778834 TCCGTATGTAGTAGTCCATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
4389 4500 6.322969 ACATCCGTATGTAGTAGTCCATTTGA 59.677 38.462 0.00 0.00 44.66 2.69
4390 4501 6.513180 ACATCCGTATGTAGTAGTCCATTTG 58.487 40.000 0.00 0.00 44.66 2.32
4391 4502 6.726490 ACATCCGTATGTAGTAGTCCATTT 57.274 37.500 0.00 0.00 44.66 2.32
4428 4539 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
4429 4540 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
4430 4541 7.828223 AGAGCAAAATGAGTGAATCTACATTCT 59.172 33.333 0.00 0.00 39.49 2.40
4431 4542 7.909121 CAGAGCAAAATGAGTGAATCTACATTC 59.091 37.037 0.00 0.00 39.24 2.67
4432 4543 7.392673 ACAGAGCAAAATGAGTGAATCTACATT 59.607 33.333 0.00 0.00 34.99 2.71
4433 4544 6.883217 ACAGAGCAAAATGAGTGAATCTACAT 59.117 34.615 0.00 0.00 0.00 2.29
4434 4545 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
4435 4546 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
4436 4547 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
4437 4548 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
4438 4549 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
4439 4550 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
4440 4551 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
4441 4552 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
4442 4553 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
4443 4554 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
4444 4555 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
4445 4556 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
4446 4557 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
4447 4558 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
4448 4559 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
4449 4560 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
4450 4561 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
4451 4562 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
4452 4563 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
4453 4564 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
4454 4565 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
4455 4566 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
4456 4567 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
4457 4568 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4459 4570 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4460 4571 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4461 4572 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4462 4573 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4463 4574 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4464 4575 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4465 4576 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4466 4577 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4467 4578 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4480 4591 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4481 4592 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4482 4593 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4483 4594 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4484 4595 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4485 4596 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4486 4597 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4487 4598 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4488 4599 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4489 4600 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4490 4601 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4491 4602 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4492 4603 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
4493 4604 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4494 4605 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4495 4606 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4496 4607 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4497 4608 3.053095 ACATCTACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
4498 4609 2.512896 ACATCTACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
4499 4610 1.288335 ACATCTACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
4500 4611 1.409427 CACATCTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
4501 4612 2.100989 ACACATCTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
4502 4613 1.825474 CACACATCTACTCCCTCCGTT 59.175 52.381 0.00 0.00 0.00 4.44
4503 4614 1.272536 ACACACATCTACTCCCTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
4504 4615 1.475403 ACACACATCTACTCCCTCCG 58.525 55.000 0.00 0.00 0.00 4.63
4505 4616 5.416271 TTTTACACACATCTACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
4506 4617 7.606456 TGAAATTTTACACACATCTACTCCCTC 59.394 37.037 0.00 0.00 0.00 4.30
4507 4618 7.458397 TGAAATTTTACACACATCTACTCCCT 58.542 34.615 0.00 0.00 0.00 4.20
4508 4619 7.681939 TGAAATTTTACACACATCTACTCCC 57.318 36.000 0.00 0.00 0.00 4.30
4723 4848 6.267471 TCCATGGAGCCCAAATATAAATCAAC 59.733 38.462 11.44 0.00 36.95 3.18
4767 4892 1.013524 GCACCGCAAATGCCGAAAAT 61.014 50.000 0.00 0.00 37.08 1.82
4771 4896 2.046796 TAGCACCGCAAATGCCGA 60.047 55.556 0.00 0.00 44.53 5.54
4772 4897 1.922135 AACTAGCACCGCAAATGCCG 61.922 55.000 0.00 0.00 44.53 5.69
4782 4907 4.982295 GTCATTTTTGTCCAAACTAGCACC 59.018 41.667 0.00 0.00 0.00 5.01
4784 4909 4.038642 GGGTCATTTTTGTCCAAACTAGCA 59.961 41.667 0.00 0.00 0.00 3.49
4785 4910 4.280929 AGGGTCATTTTTGTCCAAACTAGC 59.719 41.667 0.00 0.00 0.00 3.42
4789 4914 3.552068 CCGAGGGTCATTTTTGTCCAAAC 60.552 47.826 0.00 0.00 0.00 2.93
4794 4919 1.200020 CAGCCGAGGGTCATTTTTGTC 59.800 52.381 0.00 0.00 0.00 3.18
4801 4926 1.832912 GATTCCAGCCGAGGGTCAT 59.167 57.895 0.00 0.00 0.00 3.06
4805 4930 3.154473 TCCGATTCCAGCCGAGGG 61.154 66.667 0.00 0.00 0.00 4.30
4806 4931 2.419198 CTCCGATTCCAGCCGAGG 59.581 66.667 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.