Multiple sequence alignment - TraesCS1B01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G256000 chr1B 100.000 2693 0 0 1 2693 451133276 451135968 0.000000e+00 4974
1 TraesCS1B01G256000 chr1D 93.896 2359 84 20 147 2469 335286276 335288610 0.000000e+00 3504
2 TraesCS1B01G256000 chr1A 91.275 2235 85 37 158 2335 432851285 432853466 0.000000e+00 2946
3 TraesCS1B01G256000 chr2D 89.167 240 26 0 1039 1278 595659326 595659087 1.570000e-77 300
4 TraesCS1B01G256000 chr2B 88.559 236 27 0 1040 1275 723962805 723963040 1.220000e-73 287


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G256000 chr1B 451133276 451135968 2692 False 4974 4974 100.000 1 2693 1 chr1B.!!$F1 2692
1 TraesCS1B01G256000 chr1D 335286276 335288610 2334 False 3504 3504 93.896 147 2469 1 chr1D.!!$F1 2322
2 TraesCS1B01G256000 chr1A 432851285 432853466 2181 False 2946 2946 91.275 158 2335 1 chr1A.!!$F1 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.598065 GCTGGTCACCGCAGAATTTT 59.402 50.0 5.87 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1820 0.108186 ACGTAGCTAGCTGCATGCAA 60.108 50.0 28.85 6.07 45.94 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.617368 CACCCTCCTCCGACGAAT 58.383 61.111 0.00 0.00 0.00 3.34
18 19 1.437986 CACCCTCCTCCGACGAATC 59.562 63.158 0.00 0.00 0.00 2.52
19 20 1.757340 ACCCTCCTCCGACGAATCC 60.757 63.158 0.00 0.00 0.00 3.01
20 21 1.455959 CCCTCCTCCGACGAATCCT 60.456 63.158 0.00 0.00 0.00 3.24
21 22 1.457009 CCCTCCTCCGACGAATCCTC 61.457 65.000 0.00 0.00 0.00 3.71
36 37 6.425577 CGAATCCTCGTTATAAACCCAAAA 57.574 37.500 0.00 0.00 40.33 2.44
37 38 7.023197 CGAATCCTCGTTATAAACCCAAAAT 57.977 36.000 0.00 0.00 40.33 1.82
38 39 7.130269 CGAATCCTCGTTATAAACCCAAAATC 58.870 38.462 0.00 0.00 40.33 2.17
39 40 6.613755 ATCCTCGTTATAAACCCAAAATCG 57.386 37.500 0.00 0.00 0.00 3.34
40 41 4.333372 TCCTCGTTATAAACCCAAAATCGC 59.667 41.667 0.00 0.00 0.00 4.58
41 42 4.496840 CCTCGTTATAAACCCAAAATCGCC 60.497 45.833 0.00 0.00 0.00 5.54
42 43 3.377798 TCGTTATAAACCCAAAATCGCCC 59.622 43.478 0.00 0.00 0.00 6.13
43 44 3.379057 CGTTATAAACCCAAAATCGCCCT 59.621 43.478 0.00 0.00 0.00 5.19
44 45 4.496840 CGTTATAAACCCAAAATCGCCCTC 60.497 45.833 0.00 0.00 0.00 4.30
45 46 2.588464 TAAACCCAAAATCGCCCTCA 57.412 45.000 0.00 0.00 0.00 3.86
46 47 1.256812 AAACCCAAAATCGCCCTCAG 58.743 50.000 0.00 0.00 0.00 3.35
47 48 0.611896 AACCCAAAATCGCCCTCAGG 60.612 55.000 0.00 0.00 0.00 3.86
59 60 1.978454 CCCTCAGGCAATCATCTTCC 58.022 55.000 0.00 0.00 0.00 3.46
60 61 1.493871 CCCTCAGGCAATCATCTTCCT 59.506 52.381 0.00 0.00 0.00 3.36
61 62 2.573369 CCTCAGGCAATCATCTTCCTG 58.427 52.381 0.92 0.92 45.59 3.86
62 63 1.948145 CTCAGGCAATCATCTTCCTGC 59.052 52.381 2.44 0.00 44.27 4.85
63 64 0.661552 CAGGCAATCATCTTCCTGCG 59.338 55.000 0.00 0.00 39.53 5.18
64 65 1.099879 AGGCAATCATCTTCCTGCGC 61.100 55.000 0.00 0.00 35.60 6.09
65 66 1.358046 GCAATCATCTTCCTGCGCC 59.642 57.895 4.18 0.00 0.00 6.53
66 67 2.028130 CAATCATCTTCCTGCGCCC 58.972 57.895 4.18 0.00 0.00 6.13
67 68 1.152881 AATCATCTTCCTGCGCCCC 60.153 57.895 4.18 0.00 0.00 5.80
68 69 1.639635 AATCATCTTCCTGCGCCCCT 61.640 55.000 4.18 0.00 0.00 4.79
69 70 2.335092 ATCATCTTCCTGCGCCCCTG 62.335 60.000 4.18 0.00 0.00 4.45
70 71 3.011517 ATCTTCCTGCGCCCCTGT 61.012 61.111 4.18 0.00 0.00 4.00
71 72 3.335356 ATCTTCCTGCGCCCCTGTG 62.335 63.158 4.18 0.00 0.00 3.66
81 82 4.778143 CCCCTGTGCGCCCAGTAC 62.778 72.222 18.69 3.33 35.92 2.73
82 83 3.706373 CCCTGTGCGCCCAGTACT 61.706 66.667 18.69 0.00 36.37 2.73
83 84 2.434884 CCTGTGCGCCCAGTACTG 60.435 66.667 18.69 16.34 36.37 2.74
84 85 2.343758 CTGTGCGCCCAGTACTGT 59.656 61.111 21.18 0.00 36.37 3.55
85 86 2.029288 CTGTGCGCCCAGTACTGTG 61.029 63.158 21.18 11.65 36.37 3.66
86 87 2.030562 GTGCGCCCAGTACTGTGT 59.969 61.111 21.18 0.00 32.41 3.72
87 88 2.030412 TGCGCCCAGTACTGTGTG 59.970 61.111 21.18 17.41 0.00 3.82
88 89 3.423154 GCGCCCAGTACTGTGTGC 61.423 66.667 24.57 24.57 37.31 4.57
89 90 3.112075 CGCCCAGTACTGTGTGCG 61.112 66.667 26.40 26.40 35.81 5.34
90 91 3.423154 GCCCAGTACTGTGTGCGC 61.423 66.667 21.18 0.00 0.00 6.09
91 92 2.343758 CCCAGTACTGTGTGCGCT 59.656 61.111 21.18 0.00 0.00 5.92
92 93 2.029288 CCCAGTACTGTGTGCGCTG 61.029 63.158 21.18 3.53 0.00 5.18
93 94 2.029288 CCAGTACTGTGTGCGCTGG 61.029 63.158 21.18 0.00 40.38 4.85
94 95 1.300931 CAGTACTGTGTGCGCTGGT 60.301 57.895 15.06 2.79 0.00 4.00
95 96 1.006102 AGTACTGTGTGCGCTGGTC 60.006 57.895 9.73 0.00 0.00 4.02
96 97 1.300620 GTACTGTGTGCGCTGGTCA 60.301 57.895 9.73 1.90 0.00 4.02
97 98 1.300620 TACTGTGTGCGCTGGTCAC 60.301 57.895 9.73 13.05 35.14 3.67
98 99 2.709125 TACTGTGTGCGCTGGTCACC 62.709 60.000 9.73 0.00 33.71 4.02
105 106 2.434884 CGCTGGTCACCGCAGAAT 60.435 61.111 10.63 0.00 0.00 2.40
106 107 2.034879 CGCTGGTCACCGCAGAATT 61.035 57.895 10.63 0.00 0.00 2.17
107 108 1.577328 CGCTGGTCACCGCAGAATTT 61.577 55.000 10.63 0.00 0.00 1.82
108 109 0.598065 GCTGGTCACCGCAGAATTTT 59.402 50.000 5.87 0.00 0.00 1.82
109 110 1.810151 GCTGGTCACCGCAGAATTTTA 59.190 47.619 5.87 0.00 0.00 1.52
110 111 2.423538 GCTGGTCACCGCAGAATTTTAT 59.576 45.455 5.87 0.00 0.00 1.40
111 112 3.119495 GCTGGTCACCGCAGAATTTTATT 60.119 43.478 5.87 0.00 0.00 1.40
112 113 4.618227 GCTGGTCACCGCAGAATTTTATTT 60.618 41.667 5.87 0.00 0.00 1.40
113 114 5.461032 TGGTCACCGCAGAATTTTATTTT 57.539 34.783 0.00 0.00 0.00 1.82
114 115 5.848406 TGGTCACCGCAGAATTTTATTTTT 58.152 33.333 0.00 0.00 0.00 1.94
115 116 5.694006 TGGTCACCGCAGAATTTTATTTTTG 59.306 36.000 0.00 0.00 0.00 2.44
116 117 5.923684 GGTCACCGCAGAATTTTATTTTTGA 59.076 36.000 0.00 0.00 0.00 2.69
117 118 6.128929 GGTCACCGCAGAATTTTATTTTTGAC 60.129 38.462 0.00 0.00 0.00 3.18
118 119 6.419413 GTCACCGCAGAATTTTATTTTTGACA 59.581 34.615 0.00 0.00 0.00 3.58
119 120 6.980978 TCACCGCAGAATTTTATTTTTGACAA 59.019 30.769 0.00 0.00 0.00 3.18
120 121 7.043059 TCACCGCAGAATTTTATTTTTGACAAC 60.043 33.333 0.00 0.00 0.00 3.32
121 122 6.074569 ACCGCAGAATTTTATTTTTGACAACG 60.075 34.615 0.00 0.00 0.00 4.10
122 123 6.143118 CCGCAGAATTTTATTTTTGACAACGA 59.857 34.615 0.00 0.00 0.00 3.85
123 124 7.306283 CCGCAGAATTTTATTTTTGACAACGAA 60.306 33.333 0.00 0.00 0.00 3.85
124 125 8.053072 CGCAGAATTTTATTTTTGACAACGAAA 58.947 29.630 0.00 0.00 0.00 3.46
125 126 9.862585 GCAGAATTTTATTTTTGACAACGAAAT 57.137 25.926 0.00 3.89 30.64 2.17
132 133 6.747659 ATTTTTGACAACGAAATTCGAAGG 57.252 33.333 22.92 12.41 43.74 3.46
133 134 5.487153 TTTTGACAACGAAATTCGAAGGA 57.513 34.783 22.92 2.66 43.74 3.36
134 135 5.487153 TTTGACAACGAAATTCGAAGGAA 57.513 34.783 22.92 8.06 43.74 3.36
135 136 4.725556 TGACAACGAAATTCGAAGGAAG 57.274 40.909 22.92 7.08 43.74 3.46
136 137 4.373527 TGACAACGAAATTCGAAGGAAGA 58.626 39.130 22.92 0.00 43.74 2.87
137 138 4.812091 TGACAACGAAATTCGAAGGAAGAA 59.188 37.500 22.92 0.00 43.74 2.52
138 139 5.091910 ACAACGAAATTCGAAGGAAGAAC 57.908 39.130 22.92 0.00 43.74 3.01
139 140 4.024302 ACAACGAAATTCGAAGGAAGAACC 60.024 41.667 22.92 0.00 43.74 3.62
140 141 3.735591 ACGAAATTCGAAGGAAGAACCA 58.264 40.909 22.92 0.00 43.74 3.67
141 142 4.324267 ACGAAATTCGAAGGAAGAACCAT 58.676 39.130 22.92 0.00 43.74 3.55
142 143 5.484715 ACGAAATTCGAAGGAAGAACCATA 58.515 37.500 22.92 0.00 43.74 2.74
143 144 6.113411 ACGAAATTCGAAGGAAGAACCATAT 58.887 36.000 22.92 0.00 43.74 1.78
144 145 7.270047 ACGAAATTCGAAGGAAGAACCATATA 58.730 34.615 22.92 0.00 43.74 0.86
145 146 7.224167 ACGAAATTCGAAGGAAGAACCATATAC 59.776 37.037 22.92 0.00 43.74 1.47
146 147 7.478520 AAATTCGAAGGAAGAACCATATACG 57.521 36.000 3.35 0.00 42.04 3.06
147 148 5.840243 TTCGAAGGAAGAACCATATACGA 57.160 39.130 0.00 0.00 42.04 3.43
148 149 6.401047 TTCGAAGGAAGAACCATATACGAT 57.599 37.500 0.00 0.00 42.04 3.73
149 150 5.769367 TCGAAGGAAGAACCATATACGATG 58.231 41.667 0.00 0.00 42.04 3.84
150 151 5.533528 TCGAAGGAAGAACCATATACGATGA 59.466 40.000 0.00 0.00 42.04 2.92
151 152 6.208797 TCGAAGGAAGAACCATATACGATGAT 59.791 38.462 0.00 0.00 42.04 2.45
152 153 6.528423 CGAAGGAAGAACCATATACGATGATC 59.472 42.308 0.00 0.00 42.04 2.92
224 227 5.471257 CCTACGTCATTAAGGAGAATAGCC 58.529 45.833 0.00 0.00 31.64 3.93
268 271 2.674462 GCCGGAACCTTTCTGTAGAGTC 60.674 54.545 5.05 0.00 34.15 3.36
349 352 2.519302 AAGGCCAGCTGTGCGTTT 60.519 55.556 21.61 15.04 33.40 3.60
417 428 4.415501 CACGTGCGAGCGCTCAAC 62.416 66.667 34.69 28.61 42.51 3.18
523 535 1.606668 CGACCCTGCACAAAAAGCTAA 59.393 47.619 0.00 0.00 0.00 3.09
572 584 2.359850 GCCATGGTGTCGCAGGAA 60.360 61.111 14.67 0.00 0.00 3.36
812 834 2.673523 GCCCATGTGTCCTGCTCT 59.326 61.111 0.00 0.00 0.00 4.09
814 836 1.908340 GCCCATGTGTCCTGCTCTCT 61.908 60.000 0.00 0.00 0.00 3.10
824 846 4.704103 TGCTCTCTCGGCCCCACT 62.704 66.667 0.00 0.00 0.00 4.00
881 903 3.522808 GGATACCTCGGACGCACT 58.477 61.111 0.00 0.00 0.00 4.40
966 988 2.370445 CGCCTCCCAGTCCCAGATT 61.370 63.158 0.00 0.00 0.00 2.40
1113 1146 1.833934 CAACCAGCAGTGCCCCTTT 60.834 57.895 12.58 0.00 0.00 3.11
1314 1350 4.790962 ATGCAGCACCCTCCAGCG 62.791 66.667 0.00 0.00 35.48 5.18
1728 1767 5.182760 ACGTCGACATAGAAAGTAAGGAGTT 59.817 40.000 17.16 0.00 0.00 3.01
1781 1820 4.626081 GCTGGTCACTGGCCGTGT 62.626 66.667 21.61 10.83 44.16 4.49
1805 1848 2.561733 TGCAGCTAGCTACGTAGTTG 57.438 50.000 18.86 14.09 41.60 3.16
1908 1954 2.626266 TGATATAATCGTGCGTGGGAGT 59.374 45.455 0.00 0.00 0.00 3.85
1940 1986 6.990341 TGAAATGATCAGTCTAATGGTGTG 57.010 37.500 0.09 0.00 33.04 3.82
1941 1987 6.475504 TGAAATGATCAGTCTAATGGTGTGT 58.524 36.000 0.09 0.00 33.04 3.72
1942 1988 6.372381 TGAAATGATCAGTCTAATGGTGTGTG 59.628 38.462 0.09 0.00 33.04 3.82
1943 1989 3.599343 TGATCAGTCTAATGGTGTGTGC 58.401 45.455 0.00 0.00 0.00 4.57
1944 1990 3.261643 TGATCAGTCTAATGGTGTGTGCT 59.738 43.478 0.00 0.00 0.00 4.40
1945 1991 3.044235 TCAGTCTAATGGTGTGTGCTG 57.956 47.619 0.00 0.00 0.00 4.41
1946 1992 2.079158 CAGTCTAATGGTGTGTGCTGG 58.921 52.381 0.00 0.00 0.00 4.85
1947 1993 0.804989 GTCTAATGGTGTGTGCTGGC 59.195 55.000 0.00 0.00 0.00 4.85
2025 2071 2.791253 TTGGGGCATCTCCAAGACT 58.209 52.632 0.00 0.00 39.15 3.24
2026 2072 0.620556 TTGGGGCATCTCCAAGACTC 59.379 55.000 0.00 0.00 39.15 3.36
2027 2073 1.274703 TGGGGCATCTCCAAGACTCC 61.275 60.000 0.00 0.00 36.21 3.85
2028 2074 1.274703 GGGGCATCTCCAAGACTCCA 61.275 60.000 0.00 0.00 36.21 3.86
2029 2075 0.620556 GGGCATCTCCAAGACTCCAA 59.379 55.000 0.00 0.00 36.21 3.53
2061 2107 0.740737 GGCCGACTCCATGGAATTTG 59.259 55.000 17.00 9.41 0.00 2.32
2071 2117 1.402968 CATGGAATTTGCGTCCCTCAG 59.597 52.381 0.00 0.00 33.89 3.35
2129 2183 7.535139 ACACACCGACATAATTGATTTTAAGG 58.465 34.615 0.00 0.00 0.00 2.69
2132 2186 8.026607 ACACCGACATAATTGATTTTAAGGTTG 58.973 33.333 0.00 0.00 0.00 3.77
2157 2211 9.883142 TGAATTTTACACAACAAAAGATCCTTT 57.117 25.926 0.00 0.00 0.00 3.11
2161 2215 9.810545 TTTTACACAACAAAAGATCCTTTAAGG 57.189 29.630 4.29 4.29 36.46 2.69
2446 2509 7.905604 ACGTGATTGTATATACATTCCATGG 57.094 36.000 24.65 4.97 36.34 3.66
2449 2512 7.201435 CGTGATTGTATATACATTCCATGGTCG 60.201 40.741 24.65 17.62 36.34 4.79
2456 2519 1.812571 ACATTCCATGGTCGAAAGTGC 59.187 47.619 12.58 0.00 33.60 4.40
2457 2520 1.811965 CATTCCATGGTCGAAAGTGCA 59.188 47.619 12.58 0.00 0.00 4.57
2464 2527 4.212004 CCATGGTCGAAAGTGCACTATATG 59.788 45.833 22.01 15.11 0.00 1.78
2474 2537 1.502231 GCACTATATGCGTGTCCAGG 58.498 55.000 8.26 0.00 46.55 4.45
2475 2538 1.068588 GCACTATATGCGTGTCCAGGA 59.931 52.381 8.26 0.00 46.55 3.86
2476 2539 2.289072 GCACTATATGCGTGTCCAGGAT 60.289 50.000 0.00 0.00 46.55 3.24
2477 2540 3.056821 GCACTATATGCGTGTCCAGGATA 60.057 47.826 0.00 0.00 46.55 2.59
2478 2541 4.560716 GCACTATATGCGTGTCCAGGATAA 60.561 45.833 0.00 0.00 46.55 1.75
2479 2542 5.724328 CACTATATGCGTGTCCAGGATAAT 58.276 41.667 0.00 0.00 0.00 1.28
2480 2543 6.166279 CACTATATGCGTGTCCAGGATAATT 58.834 40.000 0.00 0.00 0.00 1.40
2481 2544 7.320399 CACTATATGCGTGTCCAGGATAATTA 58.680 38.462 0.00 0.00 0.00 1.40
2482 2545 7.817478 CACTATATGCGTGTCCAGGATAATTAA 59.183 37.037 0.00 0.00 0.00 1.40
2483 2546 8.035394 ACTATATGCGTGTCCAGGATAATTAAG 58.965 37.037 0.00 0.00 0.00 1.85
2484 2547 4.746535 TGCGTGTCCAGGATAATTAAGA 57.253 40.909 0.00 0.00 0.00 2.10
2485 2548 5.290493 TGCGTGTCCAGGATAATTAAGAT 57.710 39.130 0.00 0.00 0.00 2.40
2486 2549 5.056480 TGCGTGTCCAGGATAATTAAGATG 58.944 41.667 0.00 0.00 0.00 2.90
2487 2550 4.083802 GCGTGTCCAGGATAATTAAGATGC 60.084 45.833 0.00 0.00 0.00 3.91
2488 2551 5.056480 CGTGTCCAGGATAATTAAGATGCA 58.944 41.667 0.00 0.00 0.00 3.96
2489 2552 5.178252 CGTGTCCAGGATAATTAAGATGCAG 59.822 44.000 0.00 0.00 0.00 4.41
2490 2553 6.058183 GTGTCCAGGATAATTAAGATGCAGT 58.942 40.000 0.00 0.00 0.00 4.40
2491 2554 7.217200 GTGTCCAGGATAATTAAGATGCAGTA 58.783 38.462 0.00 0.00 0.00 2.74
2492 2555 7.715249 GTGTCCAGGATAATTAAGATGCAGTAA 59.285 37.037 0.00 0.00 0.00 2.24
2493 2556 8.439971 TGTCCAGGATAATTAAGATGCAGTAAT 58.560 33.333 0.00 0.00 0.00 1.89
2494 2557 8.940952 GTCCAGGATAATTAAGATGCAGTAATC 58.059 37.037 0.00 0.00 0.00 1.75
2495 2558 8.103305 TCCAGGATAATTAAGATGCAGTAATCC 58.897 37.037 0.00 0.00 0.00 3.01
2496 2559 8.105829 CCAGGATAATTAAGATGCAGTAATCCT 58.894 37.037 0.00 0.00 40.98 3.24
2497 2560 9.512588 CAGGATAATTAAGATGCAGTAATCCTT 57.487 33.333 0.00 0.00 38.87 3.36
2500 2563 9.617975 GATAATTAAGATGCAGTAATCCTTTGC 57.382 33.333 0.00 0.00 38.30 3.68
2501 2564 7.651027 AATTAAGATGCAGTAATCCTTTGCT 57.349 32.000 0.00 0.00 38.60 3.91
2502 2565 8.752005 AATTAAGATGCAGTAATCCTTTGCTA 57.248 30.769 0.00 0.00 38.60 3.49
2503 2566 8.752005 ATTAAGATGCAGTAATCCTTTGCTAA 57.248 30.769 0.00 0.00 38.60 3.09
2504 2567 6.690194 AAGATGCAGTAATCCTTTGCTAAG 57.310 37.500 0.43 0.43 38.60 2.18
2505 2568 5.749462 AGATGCAGTAATCCTTTGCTAAGT 58.251 37.500 7.14 0.00 38.60 2.24
2506 2569 6.889198 AGATGCAGTAATCCTTTGCTAAGTA 58.111 36.000 7.14 0.00 38.60 2.24
2507 2570 7.512992 AGATGCAGTAATCCTTTGCTAAGTAT 58.487 34.615 7.14 0.00 38.60 2.12
2508 2571 6.925610 TGCAGTAATCCTTTGCTAAGTATG 57.074 37.500 7.14 0.00 38.60 2.39
2509 2572 5.296780 TGCAGTAATCCTTTGCTAAGTATGC 59.703 40.000 7.14 7.82 38.60 3.14
2510 2573 5.278022 GCAGTAATCCTTTGCTAAGTATGCC 60.278 44.000 7.14 0.00 35.05 4.40
2511 2574 5.822519 CAGTAATCCTTTGCTAAGTATGCCA 59.177 40.000 7.14 0.00 0.00 4.92
2512 2575 6.488006 CAGTAATCCTTTGCTAAGTATGCCAT 59.512 38.462 7.14 0.00 0.00 4.40
2513 2576 5.779529 AATCCTTTGCTAAGTATGCCATG 57.220 39.130 7.14 0.00 0.00 3.66
2514 2577 4.235079 TCCTTTGCTAAGTATGCCATGT 57.765 40.909 7.14 0.00 0.00 3.21
2515 2578 4.199310 TCCTTTGCTAAGTATGCCATGTC 58.801 43.478 7.14 0.00 0.00 3.06
2516 2579 3.947196 CCTTTGCTAAGTATGCCATGTCA 59.053 43.478 7.14 0.00 0.00 3.58
2517 2580 4.581824 CCTTTGCTAAGTATGCCATGTCAT 59.418 41.667 7.14 0.00 0.00 3.06
2518 2581 5.278169 CCTTTGCTAAGTATGCCATGTCATC 60.278 44.000 7.14 0.00 0.00 2.92
2519 2582 4.420522 TGCTAAGTATGCCATGTCATCA 57.579 40.909 0.00 0.00 0.00 3.07
2520 2583 4.129380 TGCTAAGTATGCCATGTCATCAC 58.871 43.478 0.00 0.00 0.00 3.06
2521 2584 4.141642 TGCTAAGTATGCCATGTCATCACT 60.142 41.667 0.00 0.00 0.00 3.41
2522 2585 4.818546 GCTAAGTATGCCATGTCATCACTT 59.181 41.667 12.74 12.74 31.63 3.16
2523 2586 5.297776 GCTAAGTATGCCATGTCATCACTTT 59.702 40.000 13.13 0.92 30.54 2.66
2524 2587 6.183360 GCTAAGTATGCCATGTCATCACTTTT 60.183 38.462 13.13 0.00 30.54 2.27
2525 2588 7.012327 GCTAAGTATGCCATGTCATCACTTTTA 59.988 37.037 13.13 1.87 30.54 1.52
2526 2589 6.683974 AGTATGCCATGTCATCACTTTTAC 57.316 37.500 0.00 0.00 0.00 2.01
2527 2590 6.179756 AGTATGCCATGTCATCACTTTTACA 58.820 36.000 0.00 0.00 0.00 2.41
2528 2591 5.571784 ATGCCATGTCATCACTTTTACAG 57.428 39.130 0.00 0.00 0.00 2.74
2529 2592 4.397420 TGCCATGTCATCACTTTTACAGT 58.603 39.130 0.00 0.00 35.35 3.55
2530 2593 4.455533 TGCCATGTCATCACTTTTACAGTC 59.544 41.667 0.00 0.00 30.92 3.51
2531 2594 4.455533 GCCATGTCATCACTTTTACAGTCA 59.544 41.667 0.00 0.00 30.92 3.41
2532 2595 5.617751 GCCATGTCATCACTTTTACAGTCAC 60.618 44.000 0.00 0.00 30.92 3.67
2533 2596 5.702670 CCATGTCATCACTTTTACAGTCACT 59.297 40.000 0.00 0.00 30.92 3.41
2534 2597 6.873605 CCATGTCATCACTTTTACAGTCACTA 59.126 38.462 0.00 0.00 30.92 2.74
2535 2598 7.387673 CCATGTCATCACTTTTACAGTCACTAA 59.612 37.037 0.00 0.00 30.92 2.24
2536 2599 8.939929 CATGTCATCACTTTTACAGTCACTAAT 58.060 33.333 0.00 0.00 30.92 1.73
2537 2600 8.534333 TGTCATCACTTTTACAGTCACTAATC 57.466 34.615 0.00 0.00 30.92 1.75
2538 2601 8.367911 TGTCATCACTTTTACAGTCACTAATCT 58.632 33.333 0.00 0.00 30.92 2.40
2539 2602 8.865001 GTCATCACTTTTACAGTCACTAATCTC 58.135 37.037 0.00 0.00 30.92 2.75
2540 2603 8.585018 TCATCACTTTTACAGTCACTAATCTCA 58.415 33.333 0.00 0.00 30.92 3.27
2541 2604 9.376075 CATCACTTTTACAGTCACTAATCTCAT 57.624 33.333 0.00 0.00 30.92 2.90
2542 2605 8.763049 TCACTTTTACAGTCACTAATCTCATG 57.237 34.615 0.00 0.00 30.92 3.07
2543 2606 8.585018 TCACTTTTACAGTCACTAATCTCATGA 58.415 33.333 0.00 0.00 30.92 3.07
2544 2607 9.376075 CACTTTTACAGTCACTAATCTCATGAT 57.624 33.333 0.00 0.00 30.92 2.45
2549 2612 7.652524 ACAGTCACTAATCTCATGATACAGT 57.347 36.000 0.00 0.00 31.95 3.55
2550 2613 8.753497 ACAGTCACTAATCTCATGATACAGTA 57.247 34.615 0.00 0.00 31.17 2.74
2551 2614 9.190317 ACAGTCACTAATCTCATGATACAGTAA 57.810 33.333 0.00 0.00 31.17 2.24
2554 2617 9.632807 GTCACTAATCTCATGATACAGTAATCC 57.367 37.037 0.00 0.00 31.17 3.01
2555 2618 9.593565 TCACTAATCTCATGATACAGTAATCCT 57.406 33.333 0.00 0.00 31.17 3.24
2556 2619 9.853555 CACTAATCTCATGATACAGTAATCCTC 57.146 37.037 0.00 0.00 31.17 3.71
2557 2620 9.821240 ACTAATCTCATGATACAGTAATCCTCT 57.179 33.333 0.00 0.00 30.81 3.69
2559 2622 6.338214 TCTCATGATACAGTAATCCTCTGC 57.662 41.667 0.00 0.00 36.50 4.26
2560 2623 6.073981 TCTCATGATACAGTAATCCTCTGCT 58.926 40.000 0.00 0.00 36.50 4.24
2561 2624 7.234355 TCTCATGATACAGTAATCCTCTGCTA 58.766 38.462 0.00 0.00 36.50 3.49
2562 2625 7.725844 TCTCATGATACAGTAATCCTCTGCTAA 59.274 37.037 0.00 0.00 36.50 3.09
2563 2626 7.890515 TCATGATACAGTAATCCTCTGCTAAG 58.109 38.462 0.00 0.00 36.50 2.18
2564 2627 7.507277 TCATGATACAGTAATCCTCTGCTAAGT 59.493 37.037 0.00 0.00 36.50 2.24
2565 2628 8.797438 CATGATACAGTAATCCTCTGCTAAGTA 58.203 37.037 0.00 0.00 36.50 2.24
2566 2629 8.941995 TGATACAGTAATCCTCTGCTAAGTAT 57.058 34.615 0.00 0.00 36.50 2.12
2567 2630 8.797438 TGATACAGTAATCCTCTGCTAAGTATG 58.203 37.037 0.00 0.00 36.50 2.39
2568 2631 5.848406 ACAGTAATCCTCTGCTAAGTATGC 58.152 41.667 0.00 0.00 36.50 3.14
2569 2632 5.363868 ACAGTAATCCTCTGCTAAGTATGCA 59.636 40.000 0.00 0.00 36.50 3.96
2570 2633 6.127054 ACAGTAATCCTCTGCTAAGTATGCAA 60.127 38.462 0.00 0.00 40.13 4.08
2571 2634 6.933521 CAGTAATCCTCTGCTAAGTATGCAAT 59.066 38.462 0.00 0.00 40.13 3.56
2572 2635 6.933521 AGTAATCCTCTGCTAAGTATGCAATG 59.066 38.462 0.00 0.00 40.13 2.82
2573 2636 3.470709 TCCTCTGCTAAGTATGCAATGC 58.529 45.455 0.00 0.00 40.13 3.56
2574 2637 2.551459 CCTCTGCTAAGTATGCAATGCC 59.449 50.000 1.53 0.00 40.13 4.40
2575 2638 3.208594 CTCTGCTAAGTATGCAATGCCA 58.791 45.455 1.53 0.00 40.13 4.92
2576 2639 3.819337 CTCTGCTAAGTATGCAATGCCAT 59.181 43.478 1.53 0.00 40.13 4.40
2577 2640 3.817084 TCTGCTAAGTATGCAATGCCATC 59.183 43.478 1.53 0.00 40.13 3.51
2578 2641 3.553904 TGCTAAGTATGCAATGCCATCA 58.446 40.909 1.53 0.00 37.51 3.07
2579 2642 3.316029 TGCTAAGTATGCAATGCCATCAC 59.684 43.478 1.53 0.00 37.51 3.06
2580 2643 3.567164 GCTAAGTATGCAATGCCATCACT 59.433 43.478 1.53 0.00 0.00 3.41
2581 2644 4.037208 GCTAAGTATGCAATGCCATCACTT 59.963 41.667 1.53 9.09 0.00 3.16
2582 2645 5.450965 GCTAAGTATGCAATGCCATCACTTT 60.451 40.000 1.53 0.00 0.00 2.66
2583 2646 5.410355 AAGTATGCAATGCCATCACTTTT 57.590 34.783 1.53 0.00 0.00 2.27
2584 2647 6.528537 AAGTATGCAATGCCATCACTTTTA 57.471 33.333 1.53 0.00 0.00 1.52
2585 2648 5.894807 AGTATGCAATGCCATCACTTTTAC 58.105 37.500 1.53 0.00 0.00 2.01
2586 2649 5.653769 AGTATGCAATGCCATCACTTTTACT 59.346 36.000 1.53 0.00 0.00 2.24
2587 2650 4.177165 TGCAATGCCATCACTTTTACTG 57.823 40.909 1.53 0.00 0.00 2.74
2588 2651 2.925563 GCAATGCCATCACTTTTACTGC 59.074 45.455 0.00 0.00 0.00 4.40
2589 2652 3.514645 CAATGCCATCACTTTTACTGCC 58.485 45.455 0.00 0.00 0.00 4.85
2590 2653 1.164411 TGCCATCACTTTTACTGCCG 58.836 50.000 0.00 0.00 0.00 5.69
2591 2654 0.179163 GCCATCACTTTTACTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2592 2655 1.453155 CCATCACTTTTACTGCCGCT 58.547 50.000 0.00 0.00 0.00 5.52
2593 2656 2.627945 CCATCACTTTTACTGCCGCTA 58.372 47.619 0.00 0.00 0.00 4.26
2594 2657 3.006940 CCATCACTTTTACTGCCGCTAA 58.993 45.455 0.00 0.00 0.00 3.09
2595 2658 3.627577 CCATCACTTTTACTGCCGCTAAT 59.372 43.478 0.00 0.00 0.00 1.73
2596 2659 4.260784 CCATCACTTTTACTGCCGCTAATC 60.261 45.833 0.00 0.00 0.00 1.75
2597 2660 4.202245 TCACTTTTACTGCCGCTAATCT 57.798 40.909 0.00 0.00 0.00 2.40
2598 2661 4.181578 TCACTTTTACTGCCGCTAATCTC 58.818 43.478 0.00 0.00 0.00 2.75
2599 2662 3.932710 CACTTTTACTGCCGCTAATCTCA 59.067 43.478 0.00 0.00 0.00 3.27
2600 2663 3.933332 ACTTTTACTGCCGCTAATCTCAC 59.067 43.478 0.00 0.00 0.00 3.51
2601 2664 3.887621 TTTACTGCCGCTAATCTCACT 57.112 42.857 0.00 0.00 0.00 3.41
2602 2665 3.887621 TTACTGCCGCTAATCTCACTT 57.112 42.857 0.00 0.00 0.00 3.16
2603 2666 2.301577 ACTGCCGCTAATCTCACTTC 57.698 50.000 0.00 0.00 0.00 3.01
2604 2667 1.134670 ACTGCCGCTAATCTCACTTCC 60.135 52.381 0.00 0.00 0.00 3.46
2605 2668 0.179111 TGCCGCTAATCTCACTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
2606 2669 1.491505 GCCGCTAATCTCACTTCCGC 61.492 60.000 0.00 0.00 0.00 5.54
2607 2670 0.103208 CCGCTAATCTCACTTCCGCT 59.897 55.000 0.00 0.00 0.00 5.52
2608 2671 1.337071 CCGCTAATCTCACTTCCGCTA 59.663 52.381 0.00 0.00 0.00 4.26
2609 2672 2.223735 CCGCTAATCTCACTTCCGCTAA 60.224 50.000 0.00 0.00 0.00 3.09
2610 2673 3.553096 CCGCTAATCTCACTTCCGCTAAT 60.553 47.826 0.00 0.00 0.00 1.73
2611 2674 3.670991 CGCTAATCTCACTTCCGCTAATC 59.329 47.826 0.00 0.00 0.00 1.75
2612 2675 4.557695 CGCTAATCTCACTTCCGCTAATCT 60.558 45.833 0.00 0.00 0.00 2.40
2613 2676 4.920927 GCTAATCTCACTTCCGCTAATCTC 59.079 45.833 0.00 0.00 0.00 2.75
2614 2677 5.508153 GCTAATCTCACTTCCGCTAATCTCA 60.508 44.000 0.00 0.00 0.00 3.27
2615 2678 3.784701 TCTCACTTCCGCTAATCTCAC 57.215 47.619 0.00 0.00 0.00 3.51
2616 2679 3.089284 TCTCACTTCCGCTAATCTCACA 58.911 45.455 0.00 0.00 0.00 3.58
2617 2680 3.701542 TCTCACTTCCGCTAATCTCACAT 59.298 43.478 0.00 0.00 0.00 3.21
2618 2681 4.160439 TCTCACTTCCGCTAATCTCACATT 59.840 41.667 0.00 0.00 0.00 2.71
2619 2682 4.183865 TCACTTCCGCTAATCTCACATTG 58.816 43.478 0.00 0.00 0.00 2.82
2620 2683 4.081697 TCACTTCCGCTAATCTCACATTGA 60.082 41.667 0.00 0.00 0.00 2.57
2621 2684 4.813161 CACTTCCGCTAATCTCACATTGAT 59.187 41.667 0.00 0.00 0.00 2.57
2622 2685 5.295292 CACTTCCGCTAATCTCACATTGATT 59.705 40.000 0.00 0.00 37.78 2.57
2623 2686 5.525378 ACTTCCGCTAATCTCACATTGATTC 59.475 40.000 0.00 0.00 35.90 2.52
2624 2687 5.022282 TCCGCTAATCTCACATTGATTCA 57.978 39.130 0.00 0.00 35.90 2.57
2625 2688 5.427378 TCCGCTAATCTCACATTGATTCAA 58.573 37.500 0.75 0.75 35.90 2.69
2626 2689 5.525012 TCCGCTAATCTCACATTGATTCAAG 59.475 40.000 5.21 0.58 35.90 3.02
2627 2690 5.295292 CCGCTAATCTCACATTGATTCAAGT 59.705 40.000 5.21 1.17 35.90 3.16
2628 2691 6.417327 CGCTAATCTCACATTGATTCAAGTC 58.583 40.000 5.21 0.00 35.90 3.01
2629 2692 6.510799 CGCTAATCTCACATTGATTCAAGTCC 60.511 42.308 5.21 0.00 35.90 3.85
2630 2693 6.317140 GCTAATCTCACATTGATTCAAGTCCA 59.683 38.462 5.21 0.00 35.90 4.02
2631 2694 7.148188 GCTAATCTCACATTGATTCAAGTCCAA 60.148 37.037 5.21 0.00 35.90 3.53
2632 2695 7.713734 AATCTCACATTGATTCAAGTCCAAT 57.286 32.000 5.21 0.00 29.09 3.16
2633 2696 7.713734 ATCTCACATTGATTCAAGTCCAATT 57.286 32.000 5.21 0.00 0.00 2.32
2634 2697 7.149569 TCTCACATTGATTCAAGTCCAATTC 57.850 36.000 5.21 0.00 0.00 2.17
2635 2698 6.716173 TCTCACATTGATTCAAGTCCAATTCA 59.284 34.615 5.21 0.00 0.00 2.57
2636 2699 7.231115 TCTCACATTGATTCAAGTCCAATTCAA 59.769 33.333 5.21 0.00 0.00 2.69
2637 2700 7.724287 TCACATTGATTCAAGTCCAATTCAAA 58.276 30.769 5.21 0.00 0.00 2.69
2638 2701 8.369424 TCACATTGATTCAAGTCCAATTCAAAT 58.631 29.630 5.21 0.00 0.00 2.32
2639 2702 8.995220 CACATTGATTCAAGTCCAATTCAAATT 58.005 29.630 5.21 0.00 0.00 1.82
2640 2703 9.211485 ACATTGATTCAAGTCCAATTCAAATTC 57.789 29.630 5.21 0.00 0.00 2.17
2641 2704 9.431887 CATTGATTCAAGTCCAATTCAAATTCT 57.568 29.630 5.21 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.437986 GATTCGTCGGAGGAGGGTG 59.562 63.158 0.31 0.00 0.00 4.61
2 3 1.455959 AGGATTCGTCGGAGGAGGG 60.456 63.158 0.31 0.00 0.00 4.30
4 5 1.649815 CGAGGATTCGTCGGAGGAG 59.350 63.158 18.43 0.00 41.84 3.69
14 15 7.130269 CGATTTTGGGTTTATAACGAGGATTC 58.870 38.462 0.00 0.00 0.00 2.52
15 16 6.459161 GCGATTTTGGGTTTATAACGAGGATT 60.459 38.462 0.00 0.00 0.00 3.01
16 17 5.008316 GCGATTTTGGGTTTATAACGAGGAT 59.992 40.000 0.00 0.00 0.00 3.24
17 18 4.333372 GCGATTTTGGGTTTATAACGAGGA 59.667 41.667 0.00 0.00 0.00 3.71
18 19 4.496840 GGCGATTTTGGGTTTATAACGAGG 60.497 45.833 0.00 0.00 0.00 4.63
19 20 4.496840 GGGCGATTTTGGGTTTATAACGAG 60.497 45.833 0.00 0.00 0.00 4.18
20 21 3.377798 GGGCGATTTTGGGTTTATAACGA 59.622 43.478 0.00 0.00 0.00 3.85
21 22 3.379057 AGGGCGATTTTGGGTTTATAACG 59.621 43.478 0.00 0.00 0.00 3.18
22 23 4.399934 TGAGGGCGATTTTGGGTTTATAAC 59.600 41.667 0.00 0.00 0.00 1.89
23 24 4.601084 TGAGGGCGATTTTGGGTTTATAA 58.399 39.130 0.00 0.00 0.00 0.98
24 25 4.204012 CTGAGGGCGATTTTGGGTTTATA 58.796 43.478 0.00 0.00 0.00 0.98
25 26 3.023832 CTGAGGGCGATTTTGGGTTTAT 58.976 45.455 0.00 0.00 0.00 1.40
26 27 2.442413 CTGAGGGCGATTTTGGGTTTA 58.558 47.619 0.00 0.00 0.00 2.01
27 28 1.256812 CTGAGGGCGATTTTGGGTTT 58.743 50.000 0.00 0.00 0.00 3.27
28 29 0.611896 CCTGAGGGCGATTTTGGGTT 60.612 55.000 0.00 0.00 0.00 4.11
29 30 1.000896 CCTGAGGGCGATTTTGGGT 60.001 57.895 0.00 0.00 0.00 4.51
30 31 3.924507 CCTGAGGGCGATTTTGGG 58.075 61.111 0.00 0.00 0.00 4.12
40 41 1.493871 AGGAAGATGATTGCCTGAGGG 59.506 52.381 0.00 0.00 0.00 4.30
45 46 1.099879 GCGCAGGAAGATGATTGCCT 61.100 55.000 0.30 0.00 33.10 4.75
46 47 1.358046 GCGCAGGAAGATGATTGCC 59.642 57.895 0.30 0.00 33.10 4.52
47 48 1.358046 GGCGCAGGAAGATGATTGC 59.642 57.895 10.83 0.00 0.00 3.56
48 49 1.450531 GGGGCGCAGGAAGATGATTG 61.451 60.000 10.83 0.00 0.00 2.67
49 50 1.152881 GGGGCGCAGGAAGATGATT 60.153 57.895 10.83 0.00 0.00 2.57
50 51 2.074948 AGGGGCGCAGGAAGATGAT 61.075 57.895 10.83 0.00 0.00 2.45
51 52 2.688666 AGGGGCGCAGGAAGATGA 60.689 61.111 10.83 0.00 0.00 2.92
52 53 2.515523 CAGGGGCGCAGGAAGATG 60.516 66.667 10.83 0.00 0.00 2.90
53 54 3.011517 ACAGGGGCGCAGGAAGAT 61.012 61.111 10.83 0.00 0.00 2.40
54 55 4.020617 CACAGGGGCGCAGGAAGA 62.021 66.667 10.83 0.00 0.00 2.87
64 65 4.778143 GTACTGGGCGCACAGGGG 62.778 72.222 40.32 20.17 42.75 4.79
65 66 3.706373 AGTACTGGGCGCACAGGG 61.706 66.667 40.32 20.96 42.75 4.45
66 67 2.434884 CAGTACTGGGCGCACAGG 60.435 66.667 40.32 23.78 42.75 4.00
67 68 2.029288 CACAGTACTGGGCGCACAG 61.029 63.158 37.13 37.13 44.03 3.66
68 69 2.030412 CACAGTACTGGGCGCACA 59.970 61.111 26.12 13.97 34.19 4.57
69 70 2.030562 ACACAGTACTGGGCGCAC 59.969 61.111 25.20 6.04 37.55 5.34
70 71 2.030412 CACACAGTACTGGGCGCA 59.970 61.111 25.20 2.47 37.55 6.09
71 72 3.423154 GCACACAGTACTGGGCGC 61.423 66.667 25.20 23.24 37.55 6.53
72 73 3.112075 CGCACACAGTACTGGGCG 61.112 66.667 30.34 30.34 40.86 6.13
73 74 3.423154 GCGCACACAGTACTGGGC 61.423 66.667 25.20 22.20 37.55 5.36
74 75 2.029288 CAGCGCACACAGTACTGGG 61.029 63.158 23.74 23.74 40.54 4.45
75 76 2.029288 CCAGCGCACACAGTACTGG 61.029 63.158 26.12 16.94 41.78 4.00
76 77 1.284982 GACCAGCGCACACAGTACTG 61.285 60.000 21.44 21.44 0.00 2.74
77 78 1.006102 GACCAGCGCACACAGTACT 60.006 57.895 11.47 0.00 0.00 2.73
78 79 1.300620 TGACCAGCGCACACAGTAC 60.301 57.895 11.47 0.00 0.00 2.73
79 80 1.300620 GTGACCAGCGCACACAGTA 60.301 57.895 11.47 0.00 36.31 2.74
80 81 2.588877 GTGACCAGCGCACACAGT 60.589 61.111 11.47 0.00 36.31 3.55
81 82 3.349006 GGTGACCAGCGCACACAG 61.349 66.667 11.47 0.00 37.99 3.66
89 90 0.598065 AAAATTCTGCGGTGACCAGC 59.402 50.000 1.11 6.97 0.00 4.85
90 91 4.701956 AATAAAATTCTGCGGTGACCAG 57.298 40.909 1.11 0.00 0.00 4.00
91 92 5.461032 AAAATAAAATTCTGCGGTGACCA 57.539 34.783 1.11 0.00 0.00 4.02
92 93 5.923684 TCAAAAATAAAATTCTGCGGTGACC 59.076 36.000 0.00 0.00 0.00 4.02
93 94 6.419413 TGTCAAAAATAAAATTCTGCGGTGAC 59.581 34.615 0.00 0.00 0.00 3.67
94 95 6.507900 TGTCAAAAATAAAATTCTGCGGTGA 58.492 32.000 0.00 0.00 0.00 4.02
95 96 6.761731 TGTCAAAAATAAAATTCTGCGGTG 57.238 33.333 0.00 0.00 0.00 4.94
96 97 6.074569 CGTTGTCAAAAATAAAATTCTGCGGT 60.075 34.615 0.00 0.00 0.00 5.68
97 98 6.143118 TCGTTGTCAAAAATAAAATTCTGCGG 59.857 34.615 0.00 0.00 0.00 5.69
98 99 7.088097 TCGTTGTCAAAAATAAAATTCTGCG 57.912 32.000 0.00 0.00 0.00 5.18
99 100 9.862585 ATTTCGTTGTCAAAAATAAAATTCTGC 57.137 25.926 0.00 0.00 0.00 4.26
106 107 8.747666 CCTTCGAATTTCGTTGTCAAAAATAAA 58.252 29.630 17.61 0.56 41.35 1.40
107 108 8.129840 TCCTTCGAATTTCGTTGTCAAAAATAA 58.870 29.630 17.61 0.74 41.35 1.40
108 109 7.640852 TCCTTCGAATTTCGTTGTCAAAAATA 58.359 30.769 17.61 0.00 41.35 1.40
109 110 6.500041 TCCTTCGAATTTCGTTGTCAAAAAT 58.500 32.000 17.61 0.00 41.35 1.82
110 111 5.881447 TCCTTCGAATTTCGTTGTCAAAAA 58.119 33.333 17.61 2.51 41.35 1.94
111 112 5.487153 TCCTTCGAATTTCGTTGTCAAAA 57.513 34.783 17.61 3.17 41.35 2.44
112 113 5.294799 TCTTCCTTCGAATTTCGTTGTCAAA 59.705 36.000 17.61 3.83 41.35 2.69
113 114 4.812091 TCTTCCTTCGAATTTCGTTGTCAA 59.188 37.500 17.61 4.49 41.35 3.18
114 115 4.373527 TCTTCCTTCGAATTTCGTTGTCA 58.626 39.130 17.61 0.00 41.35 3.58
115 116 4.985044 TCTTCCTTCGAATTTCGTTGTC 57.015 40.909 17.61 0.00 41.35 3.18
116 117 4.024302 GGTTCTTCCTTCGAATTTCGTTGT 60.024 41.667 17.61 0.00 41.35 3.32
117 118 4.024387 TGGTTCTTCCTTCGAATTTCGTTG 60.024 41.667 17.61 11.47 37.89 4.10
118 119 4.131596 TGGTTCTTCCTTCGAATTTCGTT 58.868 39.130 17.61 0.00 37.89 3.85
119 120 3.735591 TGGTTCTTCCTTCGAATTTCGT 58.264 40.909 17.61 0.00 37.89 3.85
120 121 4.946784 ATGGTTCTTCCTTCGAATTTCG 57.053 40.909 12.54 12.54 37.97 3.46
121 122 7.437267 TCGTATATGGTTCTTCCTTCGAATTTC 59.563 37.037 0.00 0.00 37.07 2.17
122 123 7.270047 TCGTATATGGTTCTTCCTTCGAATTT 58.730 34.615 0.00 0.00 37.07 1.82
123 124 6.812998 TCGTATATGGTTCTTCCTTCGAATT 58.187 36.000 0.00 0.00 37.07 2.17
124 125 6.401047 TCGTATATGGTTCTTCCTTCGAAT 57.599 37.500 0.00 0.00 37.07 3.34
125 126 5.840243 TCGTATATGGTTCTTCCTTCGAA 57.160 39.130 0.00 0.00 37.07 3.71
126 127 5.533528 TCATCGTATATGGTTCTTCCTTCGA 59.466 40.000 0.00 0.00 37.07 3.71
127 128 5.769367 TCATCGTATATGGTTCTTCCTTCG 58.231 41.667 0.00 0.00 37.07 3.79
128 129 7.607250 AGATCATCGTATATGGTTCTTCCTTC 58.393 38.462 0.00 0.00 37.07 3.46
129 130 7.546250 AGATCATCGTATATGGTTCTTCCTT 57.454 36.000 0.00 0.00 37.07 3.36
130 131 7.382110 CAAGATCATCGTATATGGTTCTTCCT 58.618 38.462 0.00 0.00 37.07 3.36
131 132 6.091441 GCAAGATCATCGTATATGGTTCTTCC 59.909 42.308 0.00 0.00 0.00 3.46
132 133 6.091441 GGCAAGATCATCGTATATGGTTCTTC 59.909 42.308 0.00 0.00 0.00 2.87
133 134 5.934625 GGCAAGATCATCGTATATGGTTCTT 59.065 40.000 0.00 0.00 0.00 2.52
134 135 5.482908 GGCAAGATCATCGTATATGGTTCT 58.517 41.667 0.00 0.00 0.00 3.01
135 136 4.631813 GGGCAAGATCATCGTATATGGTTC 59.368 45.833 0.00 0.00 0.00 3.62
136 137 4.287067 AGGGCAAGATCATCGTATATGGTT 59.713 41.667 0.00 0.00 0.00 3.67
137 138 3.840666 AGGGCAAGATCATCGTATATGGT 59.159 43.478 0.00 0.00 0.00 3.55
138 139 4.437239 GAGGGCAAGATCATCGTATATGG 58.563 47.826 0.00 0.00 0.00 2.74
139 140 4.437239 GGAGGGCAAGATCATCGTATATG 58.563 47.826 0.00 0.00 0.00 1.78
140 141 3.452627 GGGAGGGCAAGATCATCGTATAT 59.547 47.826 0.00 0.00 0.00 0.86
141 142 2.832129 GGGAGGGCAAGATCATCGTATA 59.168 50.000 0.00 0.00 0.00 1.47
142 143 1.625818 GGGAGGGCAAGATCATCGTAT 59.374 52.381 0.00 0.00 0.00 3.06
143 144 1.048601 GGGAGGGCAAGATCATCGTA 58.951 55.000 0.00 0.00 0.00 3.43
144 145 0.982852 TGGGAGGGCAAGATCATCGT 60.983 55.000 0.00 0.00 0.00 3.73
145 146 0.250209 CTGGGAGGGCAAGATCATCG 60.250 60.000 0.00 0.00 0.00 3.84
146 147 0.110104 CCTGGGAGGGCAAGATCATC 59.890 60.000 0.00 0.00 0.00 2.92
147 148 2.238530 CCTGGGAGGGCAAGATCAT 58.761 57.895 0.00 0.00 0.00 2.45
148 149 3.745546 CCTGGGAGGGCAAGATCA 58.254 61.111 0.00 0.00 0.00 2.92
249 252 2.415625 CCGACTCTACAGAAAGGTTCCG 60.416 54.545 0.00 0.00 0.00 4.30
268 271 0.458716 GCTTCCGTTTCTCTCTCCCG 60.459 60.000 0.00 0.00 0.00 5.14
349 352 2.662596 CAAGTGTCGCAGCCCCTA 59.337 61.111 0.00 0.00 0.00 3.53
417 428 0.102120 CGGCAGAAGAGCTCTAGGTG 59.898 60.000 18.59 15.26 31.12 4.00
432 443 1.734388 ATCGACATCGGACATCGGCA 61.734 55.000 11.48 0.00 40.29 5.69
523 535 2.285024 AAGCAATTGGGCATGGCGT 61.285 52.632 13.76 0.00 35.83 5.68
572 584 1.805120 GCGTACGCTCTCTCTCTCTCT 60.805 57.143 31.95 0.00 38.26 3.10
812 834 2.683933 GAAGGAGTGGGGCCGAGA 60.684 66.667 0.00 0.00 0.00 4.04
824 846 4.415332 GCCGCTCGACACGAAGGA 62.415 66.667 15.49 0.00 36.38 3.36
881 903 3.129502 CGAGGCGACGTGTAGGGA 61.130 66.667 0.00 0.00 0.00 4.20
966 988 3.186702 TGACGATGAGTGTGTTGGAAA 57.813 42.857 0.00 0.00 0.00 3.13
1329 1368 2.705220 GGCGCCGAATTACCGTTC 59.295 61.111 12.58 0.00 0.00 3.95
1572 1611 2.750657 CCAGATGCTGACCCCTCCC 61.751 68.421 0.00 0.00 32.44 4.30
1728 1767 7.341445 TGTATATGCACTATATATCACGGCA 57.659 36.000 0.00 0.00 36.78 5.69
1781 1820 0.108186 ACGTAGCTAGCTGCATGCAA 60.108 50.000 28.85 6.07 45.94 4.08
1805 1848 5.463724 CGATGGAGAAAAAGCAGATACTACC 59.536 44.000 0.00 0.00 0.00 3.18
1813 1859 1.201965 GCGACGATGGAGAAAAAGCAG 60.202 52.381 0.00 0.00 0.00 4.24
1908 1954 8.561536 TTAGACTGATCATTTCATTACCCCTA 57.438 34.615 0.00 0.00 32.72 3.53
1941 1987 4.933563 TTCAGCAGCACGCCAGCA 62.934 61.111 0.00 0.00 44.04 4.41
1942 1988 4.099170 CTTCAGCAGCACGCCAGC 62.099 66.667 0.00 0.00 44.04 4.85
2003 2049 1.299648 TTGGAGATGCCCCAAGTCG 59.700 57.895 0.00 0.00 38.64 4.18
2022 2068 3.812053 GCCAGATGATATGTGTTGGAGTC 59.188 47.826 0.00 0.00 0.00 3.36
2023 2069 3.434167 GGCCAGATGATATGTGTTGGAGT 60.434 47.826 0.00 0.00 0.00 3.85
2024 2070 3.144506 GGCCAGATGATATGTGTTGGAG 58.855 50.000 0.00 0.00 0.00 3.86
2025 2071 2.485302 CGGCCAGATGATATGTGTTGGA 60.485 50.000 2.24 0.00 0.00 3.53
2026 2072 1.875514 CGGCCAGATGATATGTGTTGG 59.124 52.381 2.24 0.00 0.00 3.77
2027 2073 2.545526 GTCGGCCAGATGATATGTGTTG 59.454 50.000 2.24 0.00 0.00 3.33
2028 2074 2.435805 AGTCGGCCAGATGATATGTGTT 59.564 45.455 2.24 0.00 0.00 3.32
2029 2075 2.036475 GAGTCGGCCAGATGATATGTGT 59.964 50.000 2.24 0.00 0.00 3.72
2061 2107 1.810030 CGCCTTAACTGAGGGACGC 60.810 63.158 0.00 0.00 37.29 5.19
2071 2117 3.181513 GGAAAATCGAAGTCCGCCTTAAC 60.182 47.826 0.00 0.00 38.37 2.01
2129 2183 9.313118 AGGATCTTTTGTTGTGTAAAATTCAAC 57.687 29.630 0.00 0.00 0.00 3.18
2269 2332 1.577328 GGTGGACGTGAATGCTGGTG 61.577 60.000 0.00 0.00 0.00 4.17
2272 2335 3.168271 CGGTGGACGTGAATGCTG 58.832 61.111 0.00 0.00 37.93 4.41
2421 2484 7.936847 ACCATGGAATGTATATACAATCACGTT 59.063 33.333 25.24 13.13 44.81 3.99
2456 2519 3.667497 ATCCTGGACACGCATATAGTG 57.333 47.619 0.00 8.46 44.57 2.74
2457 2520 6.360370 AATTATCCTGGACACGCATATAGT 57.640 37.500 0.00 0.00 0.00 2.12
2464 2527 4.083802 GCATCTTAATTATCCTGGACACGC 60.084 45.833 0.00 0.00 0.00 5.34
2469 2532 8.103305 GGATTACTGCATCTTAATTATCCTGGA 58.897 37.037 0.00 0.00 0.00 3.86
2470 2533 8.105829 AGGATTACTGCATCTTAATTATCCTGG 58.894 37.037 0.00 0.00 38.28 4.45
2471 2534 9.512588 AAGGATTACTGCATCTTAATTATCCTG 57.487 33.333 0.00 0.00 39.31 3.86
2474 2537 9.617975 GCAAAGGATTACTGCATCTTAATTATC 57.382 33.333 0.00 0.00 36.09 1.75
2475 2538 9.359653 AGCAAAGGATTACTGCATCTTAATTAT 57.640 29.630 0.00 0.00 38.58 1.28
2476 2539 8.752005 AGCAAAGGATTACTGCATCTTAATTA 57.248 30.769 0.00 0.00 38.58 1.40
2477 2540 7.651027 AGCAAAGGATTACTGCATCTTAATT 57.349 32.000 0.00 0.00 38.58 1.40
2478 2541 8.752005 TTAGCAAAGGATTACTGCATCTTAAT 57.248 30.769 0.00 0.00 38.58 1.40
2479 2542 7.829211 ACTTAGCAAAGGATTACTGCATCTTAA 59.171 33.333 0.00 0.00 38.58 1.85
2480 2543 7.338710 ACTTAGCAAAGGATTACTGCATCTTA 58.661 34.615 0.00 0.00 38.58 2.10
2481 2544 6.183347 ACTTAGCAAAGGATTACTGCATCTT 58.817 36.000 0.00 0.00 38.58 2.40
2482 2545 5.749462 ACTTAGCAAAGGATTACTGCATCT 58.251 37.500 0.00 0.00 38.58 2.90
2483 2546 7.579726 CATACTTAGCAAAGGATTACTGCATC 58.420 38.462 0.00 0.00 33.69 3.91
2484 2547 6.016777 GCATACTTAGCAAAGGATTACTGCAT 60.017 38.462 0.00 0.00 33.69 3.96
2485 2548 5.296780 GCATACTTAGCAAAGGATTACTGCA 59.703 40.000 0.00 0.00 33.69 4.41
2486 2549 5.278022 GGCATACTTAGCAAAGGATTACTGC 60.278 44.000 0.00 0.00 33.69 4.40
2487 2550 5.822519 TGGCATACTTAGCAAAGGATTACTG 59.177 40.000 0.00 0.00 33.69 2.74
2488 2551 6.001449 TGGCATACTTAGCAAAGGATTACT 57.999 37.500 0.00 0.00 33.69 2.24
2489 2552 6.263168 ACATGGCATACTTAGCAAAGGATTAC 59.737 38.462 0.00 0.00 33.69 1.89
2490 2553 6.364701 ACATGGCATACTTAGCAAAGGATTA 58.635 36.000 0.00 0.00 33.69 1.75
2491 2554 5.203528 ACATGGCATACTTAGCAAAGGATT 58.796 37.500 0.00 0.00 33.69 3.01
2492 2555 4.796606 ACATGGCATACTTAGCAAAGGAT 58.203 39.130 0.00 0.00 36.65 3.24
2493 2556 4.199310 GACATGGCATACTTAGCAAAGGA 58.801 43.478 0.00 0.00 37.01 3.36
2494 2557 3.947196 TGACATGGCATACTTAGCAAAGG 59.053 43.478 0.00 0.00 37.01 3.11
2495 2558 5.297527 TGATGACATGGCATACTTAGCAAAG 59.702 40.000 15.77 0.00 38.77 2.77
2496 2559 5.066375 GTGATGACATGGCATACTTAGCAAA 59.934 40.000 15.77 0.00 0.00 3.68
2497 2560 4.576053 GTGATGACATGGCATACTTAGCAA 59.424 41.667 15.77 0.00 0.00 3.91
2498 2561 4.129380 GTGATGACATGGCATACTTAGCA 58.871 43.478 15.77 3.90 0.00 3.49
2499 2562 4.384056 AGTGATGACATGGCATACTTAGC 58.616 43.478 15.77 0.78 0.00 3.09
2500 2563 6.932356 AAAGTGATGACATGGCATACTTAG 57.068 37.500 24.48 0.00 29.89 2.18
2501 2564 7.826744 TGTAAAAGTGATGACATGGCATACTTA 59.173 33.333 24.48 14.46 29.89 2.24
2502 2565 6.658816 TGTAAAAGTGATGACATGGCATACTT 59.341 34.615 15.77 19.43 0.00 2.24
2503 2566 6.179756 TGTAAAAGTGATGACATGGCATACT 58.820 36.000 15.77 14.88 0.00 2.12
2504 2567 6.094048 ACTGTAAAAGTGATGACATGGCATAC 59.906 38.462 15.77 12.87 37.88 2.39
2505 2568 6.179756 ACTGTAAAAGTGATGACATGGCATA 58.820 36.000 15.77 0.00 37.88 3.14
2506 2569 5.012239 ACTGTAAAAGTGATGACATGGCAT 58.988 37.500 15.73 15.73 37.88 4.40
2507 2570 4.397420 ACTGTAAAAGTGATGACATGGCA 58.603 39.130 2.18 2.18 37.88 4.92
2508 2571 4.455533 TGACTGTAAAAGTGATGACATGGC 59.544 41.667 0.00 0.00 40.07 4.40
2509 2572 5.702670 AGTGACTGTAAAAGTGATGACATGG 59.297 40.000 0.00 0.00 40.07 3.66
2510 2573 6.791887 AGTGACTGTAAAAGTGATGACATG 57.208 37.500 0.00 0.00 40.07 3.21
2511 2574 9.155975 GATTAGTGACTGTAAAAGTGATGACAT 57.844 33.333 0.00 0.00 40.07 3.06
2512 2575 8.367911 AGATTAGTGACTGTAAAAGTGATGACA 58.632 33.333 0.00 0.00 40.07 3.58
2513 2576 8.764524 AGATTAGTGACTGTAAAAGTGATGAC 57.235 34.615 0.00 0.00 40.07 3.06
2514 2577 8.585018 TGAGATTAGTGACTGTAAAAGTGATGA 58.415 33.333 0.00 0.00 40.07 2.92
2515 2578 8.763049 TGAGATTAGTGACTGTAAAAGTGATG 57.237 34.615 0.00 0.00 40.07 3.07
2516 2579 9.376075 CATGAGATTAGTGACTGTAAAAGTGAT 57.624 33.333 0.00 0.00 40.07 3.06
2517 2580 8.585018 TCATGAGATTAGTGACTGTAAAAGTGA 58.415 33.333 0.00 0.00 40.07 3.41
2518 2581 8.763049 TCATGAGATTAGTGACTGTAAAAGTG 57.237 34.615 0.00 0.00 40.07 3.16
2523 2586 9.190317 ACTGTATCATGAGATTAGTGACTGTAA 57.810 33.333 0.09 0.00 35.67 2.41
2524 2587 8.753497 ACTGTATCATGAGATTAGTGACTGTA 57.247 34.615 0.09 0.00 35.67 2.74
2525 2588 7.652524 ACTGTATCATGAGATTAGTGACTGT 57.347 36.000 0.09 0.00 35.67 3.55
2528 2591 9.632807 GGATTACTGTATCATGAGATTAGTGAC 57.367 37.037 16.05 9.44 34.42 3.67
2529 2592 9.593565 AGGATTACTGTATCATGAGATTAGTGA 57.406 33.333 16.05 10.76 34.42 3.41
2530 2593 9.853555 GAGGATTACTGTATCATGAGATTAGTG 57.146 37.037 16.05 1.11 34.42 2.74
2531 2594 9.821240 AGAGGATTACTGTATCATGAGATTAGT 57.179 33.333 12.76 12.76 35.75 2.24
2533 2596 8.526978 GCAGAGGATTACTGTATCATGAGATTA 58.473 37.037 0.09 0.00 37.64 1.75
2534 2597 7.235193 AGCAGAGGATTACTGTATCATGAGATT 59.765 37.037 0.09 0.00 37.64 2.40
2535 2598 6.725369 AGCAGAGGATTACTGTATCATGAGAT 59.275 38.462 0.09 0.00 37.64 2.75
2536 2599 6.073981 AGCAGAGGATTACTGTATCATGAGA 58.926 40.000 0.09 0.00 37.64 3.27
2537 2600 6.343716 AGCAGAGGATTACTGTATCATGAG 57.656 41.667 0.09 0.00 37.64 2.90
2538 2601 7.507277 ACTTAGCAGAGGATTACTGTATCATGA 59.493 37.037 0.00 0.00 37.64 3.07
2539 2602 7.665690 ACTTAGCAGAGGATTACTGTATCATG 58.334 38.462 0.00 0.00 37.64 3.07
2540 2603 7.847711 ACTTAGCAGAGGATTACTGTATCAT 57.152 36.000 0.00 0.00 37.64 2.45
2541 2604 8.797438 CATACTTAGCAGAGGATTACTGTATCA 58.203 37.037 0.00 0.00 37.64 2.15
2542 2605 7.757624 GCATACTTAGCAGAGGATTACTGTATC 59.242 40.741 0.00 0.00 37.64 2.24
2543 2606 7.233553 TGCATACTTAGCAGAGGATTACTGTAT 59.766 37.037 0.00 0.00 37.02 2.29
2544 2607 6.549736 TGCATACTTAGCAGAGGATTACTGTA 59.450 38.462 0.00 0.00 37.02 2.74
2545 2608 5.363868 TGCATACTTAGCAGAGGATTACTGT 59.636 40.000 0.00 0.00 37.02 3.55
2546 2609 5.847304 TGCATACTTAGCAGAGGATTACTG 58.153 41.667 0.00 0.00 37.02 2.74
2547 2610 6.485830 TTGCATACTTAGCAGAGGATTACT 57.514 37.500 0.00 0.00 43.75 2.24
2548 2611 6.348050 GCATTGCATACTTAGCAGAGGATTAC 60.348 42.308 3.15 0.00 43.75 1.89
2549 2612 5.702670 GCATTGCATACTTAGCAGAGGATTA 59.297 40.000 3.15 0.00 43.75 1.75
2550 2613 4.518211 GCATTGCATACTTAGCAGAGGATT 59.482 41.667 3.15 0.00 43.75 3.01
2551 2614 4.070716 GCATTGCATACTTAGCAGAGGAT 58.929 43.478 3.15 0.00 43.75 3.24
2552 2615 3.470709 GCATTGCATACTTAGCAGAGGA 58.529 45.455 3.15 0.00 43.75 3.71
2553 2616 2.551459 GGCATTGCATACTTAGCAGAGG 59.449 50.000 11.39 0.00 43.75 3.69
2554 2617 3.208594 TGGCATTGCATACTTAGCAGAG 58.791 45.455 11.39 0.00 43.75 3.35
2555 2618 3.280197 TGGCATTGCATACTTAGCAGA 57.720 42.857 11.39 0.00 43.75 4.26
2556 2619 3.566742 TGATGGCATTGCATACTTAGCAG 59.433 43.478 11.39 0.00 43.75 4.24
2557 2620 3.316029 GTGATGGCATTGCATACTTAGCA 59.684 43.478 11.39 0.00 40.85 3.49
2558 2621 3.567164 AGTGATGGCATTGCATACTTAGC 59.433 43.478 11.39 0.00 0.00 3.09
2559 2622 5.762825 AAGTGATGGCATTGCATACTTAG 57.237 39.130 11.39 0.00 0.00 2.18
2560 2623 6.528537 AAAAGTGATGGCATTGCATACTTA 57.471 33.333 11.39 0.00 0.00 2.24
2561 2624 5.410355 AAAAGTGATGGCATTGCATACTT 57.590 34.783 11.39 11.15 0.00 2.24
2562 2625 5.653769 AGTAAAAGTGATGGCATTGCATACT 59.346 36.000 11.39 5.83 0.00 2.12
2563 2626 5.745294 CAGTAAAAGTGATGGCATTGCATAC 59.255 40.000 11.39 3.62 0.00 2.39
2564 2627 5.679382 GCAGTAAAAGTGATGGCATTGCATA 60.679 40.000 11.39 0.00 0.00 3.14
2565 2628 4.751060 CAGTAAAAGTGATGGCATTGCAT 58.249 39.130 11.39 2.21 0.00 3.96
2566 2629 3.614630 GCAGTAAAAGTGATGGCATTGCA 60.615 43.478 11.39 0.00 0.00 4.08
2567 2630 2.925563 GCAGTAAAAGTGATGGCATTGC 59.074 45.455 0.00 0.00 0.00 3.56
2568 2631 3.514645 GGCAGTAAAAGTGATGGCATTG 58.485 45.455 0.00 0.00 38.07 2.82
2569 2632 2.164219 CGGCAGTAAAAGTGATGGCATT 59.836 45.455 0.00 0.00 38.05 3.56
2570 2633 1.745087 CGGCAGTAAAAGTGATGGCAT 59.255 47.619 0.00 0.00 38.05 4.40
2571 2634 1.164411 CGGCAGTAAAAGTGATGGCA 58.836 50.000 0.00 0.00 38.05 4.92
2572 2635 0.179163 GCGGCAGTAAAAGTGATGGC 60.179 55.000 0.00 0.00 35.08 4.40
2573 2636 1.453155 AGCGGCAGTAAAAGTGATGG 58.547 50.000 1.45 0.00 0.00 3.51
2574 2637 4.572389 AGATTAGCGGCAGTAAAAGTGATG 59.428 41.667 1.45 0.00 0.00 3.07
2575 2638 4.770795 AGATTAGCGGCAGTAAAAGTGAT 58.229 39.130 1.45 0.00 0.00 3.06
2576 2639 4.181578 GAGATTAGCGGCAGTAAAAGTGA 58.818 43.478 1.45 0.00 0.00 3.41
2577 2640 3.932710 TGAGATTAGCGGCAGTAAAAGTG 59.067 43.478 1.45 0.00 0.00 3.16
2578 2641 3.933332 GTGAGATTAGCGGCAGTAAAAGT 59.067 43.478 1.45 0.00 0.00 2.66
2579 2642 4.184629 AGTGAGATTAGCGGCAGTAAAAG 58.815 43.478 1.45 0.00 0.00 2.27
2580 2643 4.202245 AGTGAGATTAGCGGCAGTAAAA 57.798 40.909 1.45 0.00 0.00 1.52
2581 2644 3.887621 AGTGAGATTAGCGGCAGTAAA 57.112 42.857 1.45 0.00 0.00 2.01
2582 2645 3.430374 GGAAGTGAGATTAGCGGCAGTAA 60.430 47.826 1.45 0.00 0.00 2.24
2583 2646 2.100916 GGAAGTGAGATTAGCGGCAGTA 59.899 50.000 1.45 0.00 0.00 2.74
2584 2647 1.134670 GGAAGTGAGATTAGCGGCAGT 60.135 52.381 1.45 0.00 0.00 4.40
2585 2648 1.576356 GGAAGTGAGATTAGCGGCAG 58.424 55.000 1.45 0.00 0.00 4.85
2586 2649 0.179111 CGGAAGTGAGATTAGCGGCA 60.179 55.000 1.45 0.00 0.00 5.69
2587 2650 1.491505 GCGGAAGTGAGATTAGCGGC 61.492 60.000 0.00 0.00 0.00 6.53
2588 2651 0.103208 AGCGGAAGTGAGATTAGCGG 59.897 55.000 0.00 0.00 0.00 5.52
2589 2652 2.776312 TAGCGGAAGTGAGATTAGCG 57.224 50.000 0.00 0.00 0.00 4.26
2590 2653 4.877282 AGATTAGCGGAAGTGAGATTAGC 58.123 43.478 0.00 0.00 0.00 3.09
2591 2654 5.918011 GTGAGATTAGCGGAAGTGAGATTAG 59.082 44.000 0.00 0.00 0.00 1.73
2592 2655 5.359860 TGTGAGATTAGCGGAAGTGAGATTA 59.640 40.000 0.00 0.00 0.00 1.75
2593 2656 4.160439 TGTGAGATTAGCGGAAGTGAGATT 59.840 41.667 0.00 0.00 0.00 2.40
2594 2657 3.701542 TGTGAGATTAGCGGAAGTGAGAT 59.298 43.478 0.00 0.00 0.00 2.75
2595 2658 3.089284 TGTGAGATTAGCGGAAGTGAGA 58.911 45.455 0.00 0.00 0.00 3.27
2596 2659 3.510388 TGTGAGATTAGCGGAAGTGAG 57.490 47.619 0.00 0.00 0.00 3.51
2597 2660 4.081697 TCAATGTGAGATTAGCGGAAGTGA 60.082 41.667 0.00 0.00 0.00 3.41
2598 2661 4.183865 TCAATGTGAGATTAGCGGAAGTG 58.816 43.478 0.00 0.00 0.00 3.16
2599 2662 4.471904 TCAATGTGAGATTAGCGGAAGT 57.528 40.909 0.00 0.00 0.00 3.01
2600 2663 5.525012 TGAATCAATGTGAGATTAGCGGAAG 59.475 40.000 0.00 0.00 35.93 3.46
2601 2664 5.427378 TGAATCAATGTGAGATTAGCGGAA 58.573 37.500 0.00 0.00 35.93 4.30
2602 2665 5.022282 TGAATCAATGTGAGATTAGCGGA 57.978 39.130 0.00 0.00 35.93 5.54
2603 2666 5.295292 ACTTGAATCAATGTGAGATTAGCGG 59.705 40.000 0.00 0.00 35.93 5.52
2604 2667 6.355397 ACTTGAATCAATGTGAGATTAGCG 57.645 37.500 0.00 0.00 35.93 4.26
2605 2668 6.317140 TGGACTTGAATCAATGTGAGATTAGC 59.683 38.462 0.00 0.00 35.93 3.09
2606 2669 7.854557 TGGACTTGAATCAATGTGAGATTAG 57.145 36.000 0.00 0.00 35.93 1.73
2607 2670 8.812513 ATTGGACTTGAATCAATGTGAGATTA 57.187 30.769 0.00 0.00 35.93 1.75
2608 2671 7.713734 ATTGGACTTGAATCAATGTGAGATT 57.286 32.000 0.00 0.00 38.35 2.40
2609 2672 7.395206 TGAATTGGACTTGAATCAATGTGAGAT 59.605 33.333 0.00 0.00 32.24 2.75
2610 2673 6.716173 TGAATTGGACTTGAATCAATGTGAGA 59.284 34.615 0.00 0.00 32.24 3.27
2611 2674 6.916440 TGAATTGGACTTGAATCAATGTGAG 58.084 36.000 0.00 0.00 32.24 3.51
2612 2675 6.897706 TGAATTGGACTTGAATCAATGTGA 57.102 33.333 0.00 0.00 32.24 3.58
2613 2676 7.949903 TTTGAATTGGACTTGAATCAATGTG 57.050 32.000 0.00 0.00 32.24 3.21
2614 2677 9.211485 GAATTTGAATTGGACTTGAATCAATGT 57.789 29.630 0.00 0.00 32.24 2.71
2615 2678 9.431887 AGAATTTGAATTGGACTTGAATCAATG 57.568 29.630 0.00 0.00 32.24 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.