Multiple sequence alignment - TraesCS1B01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G255400 chr1B 100.000 3170 0 0 1 3170 449976338 449979507 0.000000e+00 5854.0
1 TraesCS1B01G255400 chr1B 89.937 2236 157 38 728 2947 449851154 449853337 0.000000e+00 2820.0
2 TraesCS1B01G255400 chr1B 77.793 734 130 19 1169 1887 449737452 449736737 3.780000e-114 422.0
3 TraesCS1B01G255400 chr1B 88.535 314 29 5 1 311 449850636 449850945 1.070000e-99 374.0
4 TraesCS1B01G255400 chr1D 91.639 2141 120 22 728 2844 334450828 334452933 0.000000e+00 2907.0
5 TraesCS1B01G255400 chr1D 87.892 446 39 10 1 441 334449297 334449732 7.840000e-141 510.0
6 TraesCS1B01G255400 chr1D 77.839 731 135 17 1169 1887 334336882 334336167 8.130000e-116 427.0
7 TraesCS1B01G255400 chr1D 92.823 209 13 1 522 728 334450413 334450621 5.140000e-78 302.0
8 TraesCS1B01G255400 chr1D 93.662 142 9 0 3029 3170 334452995 334453136 2.480000e-51 213.0
9 TraesCS1B01G255400 chr1D 81.250 144 23 4 3024 3165 398555756 398555897 2.580000e-21 113.0
10 TraesCS1B01G255400 chr1A 92.530 1178 55 13 728 1881 432484923 432486091 0.000000e+00 1657.0
11 TraesCS1B01G255400 chr1A 91.424 1166 61 16 728 1881 432338851 432339989 0.000000e+00 1563.0
12 TraesCS1B01G255400 chr1A 88.911 983 74 21 1981 2947 432486130 432487093 0.000000e+00 1179.0
13 TraesCS1B01G255400 chr1A 79.201 726 131 14 1169 1887 432213014 432212302 1.320000e-133 486.0
14 TraesCS1B01G255400 chr1A 96.016 251 8 1 1981 2231 432340028 432340276 1.060000e-109 407.0
15 TraesCS1B01G255400 chr1A 85.987 314 40 4 1 311 432338339 432338651 1.820000e-87 333.0
16 TraesCS1B01G255400 chr2D 83.224 304 38 7 311 609 448643643 448643348 1.870000e-67 267.0
17 TraesCS1B01G255400 chr2D 89.091 55 4 1 329 381 439048548 439048494 2.040000e-07 67.6
18 TraesCS1B01G255400 chr2D 91.111 45 4 0 312 356 286125226 286125270 9.490000e-06 62.1
19 TraesCS1B01G255400 chr3A 81.848 303 44 6 311 609 195169672 195169967 8.780000e-61 244.0
20 TraesCS1B01G255400 chr3A 89.535 86 9 0 2944 3029 514271014 514270929 3.340000e-20 110.0
21 TraesCS1B01G255400 chr3B 81.107 307 47 6 309 611 370151931 370152230 5.290000e-58 235.0
22 TraesCS1B01G255400 chr3B 85.990 207 27 1 405 609 223068741 223068535 1.480000e-53 220.0
23 TraesCS1B01G255400 chr3B 85.167 209 25 3 405 609 382836046 382835840 3.200000e-50 209.0
24 TraesCS1B01G255400 chr3B 81.690 142 23 3 3030 3169 723798879 723799019 7.190000e-22 115.0
25 TraesCS1B01G255400 chr3B 89.773 88 9 0 2944 3031 66572353 66572266 2.580000e-21 113.0
26 TraesCS1B01G255400 chr3B 88.764 89 10 0 2944 3032 407185275 407185363 3.340000e-20 110.0
27 TraesCS1B01G255400 chr7D 86.957 207 23 2 405 609 449593411 449593615 2.460000e-56 230.0
28 TraesCS1B01G255400 chr7D 86.124 209 23 3 405 609 202244093 202244299 1.480000e-53 220.0
29 TraesCS1B01G255400 chr7D 84.541 207 28 2 405 609 436142725 436142521 5.360000e-48 202.0
30 TraesCS1B01G255400 chr7D 92.045 88 6 1 2944 3031 565123480 565123566 4.290000e-24 122.0
31 TraesCS1B01G255400 chr7D 80.165 121 23 1 2784 2903 619679303 619679183 4.360000e-14 89.8
32 TraesCS1B01G255400 chr7D 81.053 95 16 2 3030 3122 92580985 92581079 1.220000e-09 75.0
33 TraesCS1B01G255400 chr6D 85.238 210 24 5 405 609 108344667 108344874 3.200000e-50 209.0
34 TraesCS1B01G255400 chr2B 90.426 94 9 0 2944 3037 206711464 206711371 1.190000e-24 124.0
35 TraesCS1B01G255400 chr2B 78.000 200 38 6 2713 2909 593670425 593670229 1.540000e-23 121.0
36 TraesCS1B01G255400 chr5B 91.954 87 7 0 2942 3028 682698714 682698800 4.290000e-24 122.0
37 TraesCS1B01G255400 chrUn 91.765 85 7 0 2944 3028 94824146 94824230 5.550000e-23 119.0
38 TraesCS1B01G255400 chr5A 90.588 85 8 0 2944 3028 453762829 453762745 2.580000e-21 113.0
39 TraesCS1B01G255400 chr2A 89.773 88 9 0 2944 3031 302441104 302441017 2.580000e-21 113.0
40 TraesCS1B01G255400 chr7B 80.000 130 26 0 2780 2909 513001314 513001185 2.600000e-16 97.1
41 TraesCS1B01G255400 chr7B 85.526 76 8 3 3030 3103 44804597 44804671 3.390000e-10 76.8
42 TraesCS1B01G255400 chr4B 96.970 33 0 1 329 361 389519400 389519431 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G255400 chr1B 449976338 449979507 3169 False 5854.000000 5854 100.000000 1 3170 1 chr1B.!!$F1 3169
1 TraesCS1B01G255400 chr1B 449850636 449853337 2701 False 1597.000000 2820 89.236000 1 2947 2 chr1B.!!$F2 2946
2 TraesCS1B01G255400 chr1B 449736737 449737452 715 True 422.000000 422 77.793000 1169 1887 1 chr1B.!!$R1 718
3 TraesCS1B01G255400 chr1D 334449297 334453136 3839 False 983.000000 2907 91.504000 1 3170 4 chr1D.!!$F2 3169
4 TraesCS1B01G255400 chr1D 334336167 334336882 715 True 427.000000 427 77.839000 1169 1887 1 chr1D.!!$R1 718
5 TraesCS1B01G255400 chr1A 432484923 432487093 2170 False 1418.000000 1657 90.720500 728 2947 2 chr1A.!!$F2 2219
6 TraesCS1B01G255400 chr1A 432338339 432340276 1937 False 767.666667 1563 91.142333 1 2231 3 chr1A.!!$F1 2230
7 TraesCS1B01G255400 chr1A 432212302 432213014 712 True 486.000000 486 79.201000 1169 1887 1 chr1A.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 259 0.525668 CGCTCTATGTCGGACACCAC 60.526 60.0 13.92 1.01 0.0 4.16 F
1041 1871 0.670854 GCTCTGTTCTTCCCCACGAC 60.671 60.0 0.00 0.00 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 1906 0.804989 GTGGAGTTGGAGGATTTGCG 59.195 55.0 0.0 0.0 0.00 4.85 R
2608 3500 0.040514 CAATGCACACGCCGAAGAAA 60.041 50.0 0.0 0.0 37.32 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 4.398988 TGAACATGTGTAATTCCTGCATCC 59.601 41.667 0.00 0.00 0.00 3.51
71 73 1.670811 GTGTAATTCCTGCATCCCACG 59.329 52.381 0.00 0.00 0.00 4.94
84 86 3.595173 CATCCCACGTAGTTCAACATCA 58.405 45.455 0.00 0.00 41.61 3.07
150 152 1.685765 CAGTGACCGGATGAGGGGA 60.686 63.158 9.46 0.00 35.02 4.81
151 153 1.080354 AGTGACCGGATGAGGGGAA 59.920 57.895 9.46 0.00 35.02 3.97
165 167 7.717875 CGGATGAGGGGAAACATAGTTTTTATA 59.282 37.037 0.00 0.00 0.00 0.98
253 255 2.034104 ACTACGCTCTATGTCGGACA 57.966 50.000 14.01 14.01 0.00 4.02
254 256 1.669779 ACTACGCTCTATGTCGGACAC 59.330 52.381 13.92 0.00 0.00 3.67
257 259 0.525668 CGCTCTATGTCGGACACCAC 60.526 60.000 13.92 1.01 0.00 4.16
259 261 1.182667 CTCTATGTCGGACACCACCA 58.817 55.000 13.92 0.00 0.00 4.17
271 275 1.143684 ACACCACCAAGCTGAAGATGT 59.856 47.619 0.00 0.00 0.00 3.06
322 326 4.676459 CGTCTGTCATGAGAGCAAGTACAT 60.676 45.833 14.89 0.00 0.00 2.29
325 329 6.813649 GTCTGTCATGAGAGCAAGTACATTAA 59.186 38.462 14.89 0.00 0.00 1.40
336 340 8.265055 AGAGCAAGTACATTAACAGGCTTATAA 58.735 33.333 0.00 0.00 33.08 0.98
372 378 4.142513 GCAATTTAGCCTGTGAAGAAGAGG 60.143 45.833 0.00 0.00 42.49 3.69
385 391 6.550854 TGTGAAGAAGAGGGACATGAAAAATT 59.449 34.615 0.00 0.00 0.00 1.82
387 393 8.576442 GTGAAGAAGAGGGACATGAAAAATTAA 58.424 33.333 0.00 0.00 0.00 1.40
388 394 9.142014 TGAAGAAGAGGGACATGAAAAATTAAA 57.858 29.630 0.00 0.00 0.00 1.52
392 398 9.927668 GAAGAGGGACATGAAAAATTAAATGAA 57.072 29.630 0.00 0.00 0.00 2.57
396 402 8.824783 AGGGACATGAAAAATTAAATGAATGGA 58.175 29.630 0.00 0.00 0.00 3.41
405 411 8.937634 AAAATTAAATGAATGGACTCTCATGC 57.062 30.769 0.00 0.00 32.60 4.06
406 412 7.893124 AATTAAATGAATGGACTCTCATGCT 57.107 32.000 0.00 0.00 32.60 3.79
407 413 6.688637 TTAAATGAATGGACTCTCATGCTG 57.311 37.500 0.00 0.00 32.60 4.41
419 425 2.357075 CTCATGCTGTCATGCAAGAGT 58.643 47.619 15.45 0.00 46.95 3.24
441 447 7.775093 AGAGTCTAGCTATATGCAGATTCCTAG 59.225 40.741 16.02 16.02 45.94 3.02
442 448 6.833416 AGTCTAGCTATATGCAGATTCCTAGG 59.167 42.308 19.34 0.82 45.94 3.02
443 449 6.605594 GTCTAGCTATATGCAGATTCCTAGGT 59.394 42.308 19.34 11.39 45.94 3.08
444 450 5.930837 AGCTATATGCAGATTCCTAGGTC 57.069 43.478 9.08 0.00 45.94 3.85
452 751 4.202121 TGCAGATTCCTAGGTCGATACAAC 60.202 45.833 9.08 0.00 0.00 3.32
457 756 8.141909 CAGATTCCTAGGTCGATACAACAAATA 58.858 37.037 9.08 0.00 0.00 1.40
462 761 8.479689 TCCTAGGTCGATACAACAAATATGAAA 58.520 33.333 9.08 0.00 0.00 2.69
501 800 8.664211 AAAGGTGAGAAAAAGTAGTACTCTTG 57.336 34.615 2.58 0.00 0.00 3.02
505 804 8.358895 GGTGAGAAAAAGTAGTACTCTTGTAGT 58.641 37.037 2.58 0.00 42.62 2.73
525 824 9.817809 TTGTAGTCAATCTTATAGCTAACCTTG 57.182 33.333 0.00 0.00 0.00 3.61
526 825 8.978472 TGTAGTCAATCTTATAGCTAACCTTGT 58.022 33.333 0.00 0.00 0.00 3.16
527 826 9.819267 GTAGTCAATCTTATAGCTAACCTTGTT 57.181 33.333 0.00 0.00 0.00 2.83
528 827 8.723942 AGTCAATCTTATAGCTAACCTTGTTG 57.276 34.615 0.00 0.00 0.00 3.33
529 828 8.322091 AGTCAATCTTATAGCTAACCTTGTTGT 58.678 33.333 0.00 0.00 0.00 3.32
530 829 9.595823 GTCAATCTTATAGCTAACCTTGTTGTA 57.404 33.333 0.00 0.00 0.00 2.41
535 1143 7.985184 TCTTATAGCTAACCTTGTTGTATGTGG 59.015 37.037 0.00 0.00 0.00 4.17
545 1153 5.296780 CCTTGTTGTATGTGGCTATAAGTGG 59.703 44.000 0.00 0.00 0.00 4.00
555 1163 6.765403 TGTGGCTATAAGTGGTGGTTATATC 58.235 40.000 0.00 0.00 0.00 1.63
570 1178 9.672673 GGTGGTTATATCTGACATAGCAATATT 57.327 33.333 0.00 0.00 0.00 1.28
648 1256 1.732941 TGTCATTGGTCCACATACGC 58.267 50.000 0.00 0.00 0.00 4.42
793 1622 4.250464 CCTAATTACAAAGCACGGTGAGA 58.750 43.478 13.29 0.00 0.00 3.27
795 1624 2.163818 TTACAAAGCACGGTGAGAGG 57.836 50.000 13.29 0.58 0.00 3.69
953 1783 5.841267 TGTATATGCCCATTACCATCAGT 57.159 39.130 0.00 0.00 0.00 3.41
954 1784 6.943899 TGTATATGCCCATTACCATCAGTA 57.056 37.500 0.00 0.00 0.00 2.74
977 1807 4.695455 AGAATATGTTCCAACCGACAACTG 59.305 41.667 0.00 0.00 34.81 3.16
998 1828 2.883828 ATCTTCCCCGGCCTATGCG 61.884 63.158 0.00 0.00 38.85 4.73
1039 1869 1.376037 GGCTCTGTTCTTCCCCACG 60.376 63.158 0.00 0.00 0.00 4.94
1040 1870 1.671742 GCTCTGTTCTTCCCCACGA 59.328 57.895 0.00 0.00 0.00 4.35
1041 1871 0.670854 GCTCTGTTCTTCCCCACGAC 60.671 60.000 0.00 0.00 0.00 4.34
1050 1882 1.331399 TTCCCCACGACACACACAGA 61.331 55.000 0.00 0.00 0.00 3.41
1110 1942 1.006102 ACTTCCTTCTCGTGGCGTG 60.006 57.895 0.00 0.00 0.00 5.34
1159 1991 2.224305 GCCTACCTCGCTCCAATTACAT 60.224 50.000 0.00 0.00 0.00 2.29
1177 2025 1.399440 CATCAGCCGTGTCTCCATTTG 59.601 52.381 0.00 0.00 0.00 2.32
1178 2026 0.684535 TCAGCCGTGTCTCCATTTGA 59.315 50.000 0.00 0.00 0.00 2.69
1471 2334 0.324738 AGGAGATCAAGGTGGAGCGA 60.325 55.000 0.00 0.00 0.00 4.93
1585 2448 2.703798 GCTGGAGGTGTACGCGGTA 61.704 63.158 12.47 0.00 0.00 4.02
1844 2716 0.034767 CAAATGGGAGCAGGAGCAGA 60.035 55.000 0.00 0.00 45.49 4.26
1935 2810 5.770685 ACTAAGCCTTCTTCTTCCATCTT 57.229 39.130 0.00 0.00 33.85 2.40
2066 2942 2.546162 GCCTACTATCTTCGACCAAGCC 60.546 54.545 0.00 0.00 31.26 4.35
2188 3065 7.939784 AAGAGTATAAAAATGTTCAGGTCCC 57.060 36.000 0.00 0.00 0.00 4.46
2216 3093 2.998670 CTGTCGTGAATGAGCATGTCTT 59.001 45.455 0.00 0.00 0.00 3.01
2270 3147 5.124645 AGCTCTTCTAAGATGCTCCAAATG 58.875 41.667 9.47 0.00 35.86 2.32
2310 3190 3.600388 ACACTCTAACAGCTAATGGTGC 58.400 45.455 0.00 0.00 44.77 5.01
2317 3197 4.301072 AACAGCTAATGGTGCCTCTTAA 57.699 40.909 0.00 0.00 44.77 1.85
2329 3209 4.563786 GGTGCCTCTTAAAGCAACTCTAGT 60.564 45.833 3.27 0.00 43.50 2.57
2339 3219 2.496470 AGCAACTCTAGTAAAGTCCCCG 59.504 50.000 0.00 0.00 0.00 5.73
2349 3229 3.773119 AGTAAAGTCCCCGTCATATGTGT 59.227 43.478 1.90 0.00 0.00 3.72
2357 3237 0.778223 CGTCATATGTGTGATCGCCG 59.222 55.000 3.31 0.00 0.00 6.46
2365 3245 2.277501 GTGATCGCCGCAATGCAC 60.278 61.111 5.91 0.00 0.00 4.57
2368 3248 0.813210 TGATCGCCGCAATGCACATA 60.813 50.000 5.91 0.00 0.00 2.29
2374 3254 2.569259 CGCAATGCACATAAAGCGG 58.431 52.632 5.91 1.21 41.30 5.52
2411 3291 2.821366 GCTACGCAGGCAGCACAT 60.821 61.111 1.96 0.00 46.13 3.21
2419 3299 1.541147 GCAGGCAGCACATAAACTCAA 59.459 47.619 0.00 0.00 44.79 3.02
2443 3323 5.595885 AGTCGTCATATCTTCACCTTCATG 58.404 41.667 0.00 0.00 0.00 3.07
2488 3377 5.423610 TCAAACACTTTGATTCCCTCCAAAA 59.576 36.000 0.00 0.00 44.21 2.44
2503 3392 6.723977 TCCCTCCAAAAGTAAATGTTTAGCAT 59.276 34.615 0.00 0.00 40.03 3.79
2534 3423 2.383298 ATGCACGTCGTTTTTGACAG 57.617 45.000 0.00 0.00 38.84 3.51
2587 3478 5.346551 CACAAATATGCAAGTCACATGTTGG 59.653 40.000 0.00 0.00 32.44 3.77
2608 3500 1.524002 CCGAGTGCACCATCCATCT 59.476 57.895 14.63 0.00 0.00 2.90
2613 3505 3.350833 GAGTGCACCATCCATCTTTCTT 58.649 45.455 14.63 0.00 0.00 2.52
2631 3523 4.029186 CGGCGTGTGCATTGTGCT 62.029 61.111 0.00 0.00 45.31 4.40
2632 3524 2.676029 CGGCGTGTGCATTGTGCTA 61.676 57.895 0.00 0.00 45.31 3.49
2633 3525 1.802636 GGCGTGTGCATTGTGCTAT 59.197 52.632 3.41 0.00 45.31 2.97
2634 3526 0.248215 GGCGTGTGCATTGTGCTATC 60.248 55.000 3.41 0.00 45.31 2.08
2635 3527 0.248215 GCGTGTGCATTGTGCTATCC 60.248 55.000 3.41 0.00 45.31 2.59
2636 3528 1.372582 CGTGTGCATTGTGCTATCCT 58.627 50.000 3.41 0.00 45.31 3.24
2637 3529 1.739466 CGTGTGCATTGTGCTATCCTT 59.261 47.619 3.41 0.00 45.31 3.36
2638 3530 2.162208 CGTGTGCATTGTGCTATCCTTT 59.838 45.455 3.41 0.00 45.31 3.11
2639 3531 3.504863 GTGTGCATTGTGCTATCCTTTG 58.495 45.455 3.41 0.00 45.31 2.77
2640 3532 2.094597 TGTGCATTGTGCTATCCTTTGC 60.095 45.455 3.41 0.00 45.31 3.68
2641 3533 2.165030 GTGCATTGTGCTATCCTTTGCT 59.835 45.455 3.41 0.00 45.31 3.91
2692 3584 1.134280 CATCTCACGCCTTCTCCCAAT 60.134 52.381 0.00 0.00 0.00 3.16
2694 3586 2.398588 TCTCACGCCTTCTCCCAATAT 58.601 47.619 0.00 0.00 0.00 1.28
2696 3588 3.199946 TCTCACGCCTTCTCCCAATATTT 59.800 43.478 0.00 0.00 0.00 1.40
2711 3603 4.142182 CCAATATTTCCGCACCACTGAATT 60.142 41.667 0.00 0.00 0.00 2.17
2738 3630 2.551721 GGCTCGGATCCAACATGATGAT 60.552 50.000 13.41 0.47 0.00 2.45
2780 3672 4.455877 GTGTTGTTCCCTCATTCGATCTTT 59.544 41.667 0.00 0.00 0.00 2.52
2850 3742 2.774234 ACATACCACCATCTCTTCCTGG 59.226 50.000 0.00 0.00 38.55 4.45
2855 3747 2.739996 CCATCTCTTCCTGGCGCCT 61.740 63.158 29.70 0.00 0.00 5.52
2868 3760 0.462759 GGCGCCTTATGCTCTCTTGT 60.463 55.000 22.15 0.00 38.05 3.16
2909 3801 4.322650 CCTCTTCTCTTGGTTCTCCTTCTG 60.323 50.000 0.00 0.00 34.23 3.02
2927 3822 3.529533 TCTGCATCTCTAGCTTTGCTTC 58.470 45.455 0.00 0.00 40.44 3.86
2930 3825 3.626217 TGCATCTCTAGCTTTGCTTCATG 59.374 43.478 0.00 0.00 40.44 3.07
2947 3842 7.656412 TGCTTCATGTCTCTTCTCATATACTC 58.344 38.462 0.00 0.00 0.00 2.59
2948 3843 7.090173 GCTTCATGTCTCTTCTCATATACTCC 58.910 42.308 0.00 0.00 0.00 3.85
2949 3844 7.531857 TTCATGTCTCTTCTCATATACTCCC 57.468 40.000 0.00 0.00 0.00 4.30
2950 3845 6.857848 TCATGTCTCTTCTCATATACTCCCT 58.142 40.000 0.00 0.00 0.00 4.20
2951 3846 6.945435 TCATGTCTCTTCTCATATACTCCCTC 59.055 42.308 0.00 0.00 0.00 4.30
2952 3847 5.636123 TGTCTCTTCTCATATACTCCCTCC 58.364 45.833 0.00 0.00 0.00 4.30
2953 3848 4.698304 GTCTCTTCTCATATACTCCCTCCG 59.302 50.000 0.00 0.00 0.00 4.63
2954 3849 4.013728 CTCTTCTCATATACTCCCTCCGG 58.986 52.174 0.00 0.00 0.00 5.14
2955 3850 3.656264 TCTTCTCATATACTCCCTCCGGA 59.344 47.826 2.93 2.93 36.45 5.14
2956 3851 3.436577 TCTCATATACTCCCTCCGGAC 57.563 52.381 0.00 0.00 33.32 4.79
2957 3852 2.041350 TCTCATATACTCCCTCCGGACC 59.959 54.545 0.00 0.00 33.32 4.46
2958 3853 1.784593 TCATATACTCCCTCCGGACCA 59.215 52.381 0.00 0.00 33.32 4.02
2959 3854 2.382305 TCATATACTCCCTCCGGACCAT 59.618 50.000 0.00 0.00 33.32 3.55
2960 3855 3.594685 TCATATACTCCCTCCGGACCATA 59.405 47.826 0.00 0.00 33.32 2.74
2961 3856 4.044952 TCATATACTCCCTCCGGACCATAA 59.955 45.833 0.00 0.00 33.32 1.90
2962 3857 3.562108 ATACTCCCTCCGGACCATAAT 57.438 47.619 0.00 0.00 33.32 1.28
2963 3858 1.424638 ACTCCCTCCGGACCATAATG 58.575 55.000 0.00 0.00 33.32 1.90
2964 3859 1.344087 ACTCCCTCCGGACCATAATGT 60.344 52.381 0.00 0.00 33.32 2.71
2965 3860 2.090943 ACTCCCTCCGGACCATAATGTA 60.091 50.000 0.00 0.00 33.32 2.29
2966 3861 2.969950 CTCCCTCCGGACCATAATGTAA 59.030 50.000 0.00 0.00 33.32 2.41
2967 3862 2.969950 TCCCTCCGGACCATAATGTAAG 59.030 50.000 0.00 0.00 31.13 2.34
2968 3863 2.969950 CCCTCCGGACCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2969 3864 3.244112 CCCTCCGGACCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2970 3865 3.552273 CCTCCGGACCATAATGTAAGACG 60.552 52.174 0.00 0.00 0.00 4.18
2971 3866 3.025978 TCCGGACCATAATGTAAGACGT 58.974 45.455 0.00 0.00 0.00 4.34
2972 3867 3.448301 TCCGGACCATAATGTAAGACGTT 59.552 43.478 0.00 0.00 0.00 3.99
2973 3868 4.081531 TCCGGACCATAATGTAAGACGTTT 60.082 41.667 0.00 0.00 0.00 3.60
2974 3869 4.269363 CCGGACCATAATGTAAGACGTTTC 59.731 45.833 0.00 0.00 0.00 2.78
2975 3870 4.269363 CGGACCATAATGTAAGACGTTTCC 59.731 45.833 0.00 0.00 0.00 3.13
2976 3871 5.425630 GGACCATAATGTAAGACGTTTCCT 58.574 41.667 0.00 0.00 0.00 3.36
2977 3872 5.293569 GGACCATAATGTAAGACGTTTCCTG 59.706 44.000 0.00 0.00 0.00 3.86
2978 3873 6.045072 ACCATAATGTAAGACGTTTCCTGA 57.955 37.500 0.00 0.00 0.00 3.86
2979 3874 5.873164 ACCATAATGTAAGACGTTTCCTGAC 59.127 40.000 0.00 0.00 0.00 3.51
2980 3875 5.872617 CCATAATGTAAGACGTTTCCTGACA 59.127 40.000 0.00 0.00 0.00 3.58
2981 3876 6.183360 CCATAATGTAAGACGTTTCCTGACAC 60.183 42.308 0.00 0.00 0.00 3.67
2982 3877 4.602340 ATGTAAGACGTTTCCTGACACT 57.398 40.909 0.00 0.00 0.00 3.55
2983 3878 5.717078 ATGTAAGACGTTTCCTGACACTA 57.283 39.130 0.00 0.00 0.00 2.74
2984 3879 4.863491 TGTAAGACGTTTCCTGACACTAC 58.137 43.478 0.00 0.00 0.00 2.73
2985 3880 4.338964 TGTAAGACGTTTCCTGACACTACA 59.661 41.667 0.00 0.00 0.00 2.74
2986 3881 3.366440 AGACGTTTCCTGACACTACAC 57.634 47.619 0.00 0.00 0.00 2.90
2987 3882 2.957006 AGACGTTTCCTGACACTACACT 59.043 45.455 0.00 0.00 0.00 3.55
2988 3883 4.139786 AGACGTTTCCTGACACTACACTA 58.860 43.478 0.00 0.00 0.00 2.74
2989 3884 4.215827 AGACGTTTCCTGACACTACACTAG 59.784 45.833 0.00 0.00 0.00 2.57
2990 3885 4.139786 ACGTTTCCTGACACTACACTAGA 58.860 43.478 0.00 0.00 0.00 2.43
2991 3886 4.215827 ACGTTTCCTGACACTACACTAGAG 59.784 45.833 0.00 0.00 0.00 2.43
2992 3887 4.215827 CGTTTCCTGACACTACACTAGAGT 59.784 45.833 0.00 0.00 32.20 3.24
2993 3888 5.617308 CGTTTCCTGACACTACACTAGAGTC 60.617 48.000 0.00 1.22 43.72 3.36
3023 3918 8.742125 AATGTCTTACATTATGGGATAGAGGA 57.258 34.615 3.51 0.00 46.11 3.71
3024 3919 8.742125 ATGTCTTACATTATGGGATAGAGGAA 57.258 34.615 0.00 0.00 34.67 3.36
3025 3920 8.195165 TGTCTTACATTATGGGATAGAGGAAG 57.805 38.462 0.00 0.00 0.00 3.46
3026 3921 7.789831 TGTCTTACATTATGGGATAGAGGAAGT 59.210 37.037 0.00 0.00 0.00 3.01
3027 3922 9.310449 GTCTTACATTATGGGATAGAGGAAGTA 57.690 37.037 0.00 0.00 0.00 2.24
3028 3923 9.310449 TCTTACATTATGGGATAGAGGAAGTAC 57.690 37.037 0.00 0.00 0.00 2.73
3029 3924 9.315363 CTTACATTATGGGATAGAGGAAGTACT 57.685 37.037 0.00 0.00 0.00 2.73
3099 3994 2.159254 CCTTCTCTCTTGAGCTTCTCCG 60.159 54.545 0.00 0.00 40.03 4.63
3102 3997 2.490115 TCTCTCTTGAGCTTCTCCGTTC 59.510 50.000 0.00 0.00 40.03 3.95
3115 4010 0.114560 TCCGTTCCAGTCTTCCTCCT 59.885 55.000 0.00 0.00 0.00 3.69
3123 4018 2.683933 TCTTCCTCCTGTCGGGCC 60.684 66.667 0.00 0.00 34.39 5.80
3139 4034 1.658673 GCCGACCTGTCCTATACGG 59.341 63.158 0.00 0.00 42.63 4.02
3141 4036 1.105167 CCGACCTGTCCTATACGGCA 61.105 60.000 0.00 0.00 34.36 5.69
3142 4037 0.311165 CGACCTGTCCTATACGGCAG 59.689 60.000 0.00 0.00 36.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.607735 AAAAATTGTGTGCCAGAAAATGAG 57.392 33.333 0.00 0.00 0.00 2.90
58 60 0.535335 GAACTACGTGGGATGCAGGA 59.465 55.000 3.26 0.00 0.00 3.86
67 69 2.028476 TCCCTGATGTTGAACTACGTGG 60.028 50.000 0.00 0.00 0.00 4.94
84 86 1.285962 CAATCACAACCCCATCTCCCT 59.714 52.381 0.00 0.00 0.00 4.20
150 152 7.107542 TGAGACGCCCTATAAAAACTATGTTT 58.892 34.615 0.00 0.00 0.00 2.83
151 153 6.646267 TGAGACGCCCTATAAAAACTATGTT 58.354 36.000 0.00 0.00 0.00 2.71
237 239 0.963856 TGGTGTCCGACATAGAGCGT 60.964 55.000 4.13 0.00 0.00 5.07
253 255 2.624838 CAAACATCTTCAGCTTGGTGGT 59.375 45.455 0.00 0.00 0.00 4.16
254 256 2.624838 ACAAACATCTTCAGCTTGGTGG 59.375 45.455 0.00 0.00 0.00 4.61
257 259 3.054878 GCAACAAACATCTTCAGCTTGG 58.945 45.455 0.00 0.00 0.00 3.61
259 261 2.859806 GCGCAACAAACATCTTCAGCTT 60.860 45.455 0.30 0.00 0.00 3.74
271 275 2.266554 CAAAAACTCCAGCGCAACAAA 58.733 42.857 11.47 0.00 0.00 2.83
336 340 3.131046 GCTAAATTGCCATGTAAGCAGGT 59.869 43.478 0.00 0.00 42.17 4.00
359 363 3.969287 TCATGTCCCTCTTCTTCACAG 57.031 47.619 0.00 0.00 0.00 3.66
364 370 9.933723 CATTTAATTTTTCATGTCCCTCTTCTT 57.066 29.630 0.00 0.00 0.00 2.52
372 378 9.657419 AGTCCATTCATTTAATTTTTCATGTCC 57.343 29.630 0.00 0.00 0.00 4.02
385 391 5.748402 ACAGCATGAGAGTCCATTCATTTA 58.252 37.500 0.00 0.00 39.69 1.40
387 393 4.197750 GACAGCATGAGAGTCCATTCATT 58.802 43.478 0.00 0.00 39.69 2.57
388 394 3.199289 TGACAGCATGAGAGTCCATTCAT 59.801 43.478 0.00 0.00 39.69 2.57
389 395 2.568509 TGACAGCATGAGAGTCCATTCA 59.431 45.455 0.00 0.00 39.69 2.57
402 408 2.783609 AGACTCTTGCATGACAGCAT 57.216 45.000 0.00 0.00 45.19 3.79
403 409 2.676176 GCTAGACTCTTGCATGACAGCA 60.676 50.000 7.52 0.00 43.99 4.41
404 410 1.932511 GCTAGACTCTTGCATGACAGC 59.067 52.381 7.52 2.33 32.87 4.40
405 411 3.523606 AGCTAGACTCTTGCATGACAG 57.476 47.619 13.91 0.00 34.89 3.51
406 412 6.685657 CATATAGCTAGACTCTTGCATGACA 58.314 40.000 13.91 0.00 34.89 3.58
407 413 5.576384 GCATATAGCTAGACTCTTGCATGAC 59.424 44.000 13.91 3.82 41.15 3.06
419 425 6.736581 ACCTAGGAATCTGCATATAGCTAGA 58.263 40.000 17.98 0.00 45.94 2.43
472 771 9.978044 GAGTACTACTTTTTCTCACCTTTTCTA 57.022 33.333 0.00 0.00 0.00 2.10
476 775 8.265764 ACAAGAGTACTACTTTTTCTCACCTTT 58.734 33.333 0.00 0.00 0.00 3.11
480 779 9.396938 GACTACAAGAGTACTACTTTTTCTCAC 57.603 37.037 0.00 0.00 39.06 3.51
501 800 9.819267 AACAAGGTTAGCTATAAGATTGACTAC 57.181 33.333 0.00 0.00 0.00 2.73
509 808 7.985184 CCACATACAACAAGGTTAGCTATAAGA 59.015 37.037 0.00 0.00 0.00 2.10
516 815 3.081804 AGCCACATACAACAAGGTTAGC 58.918 45.455 0.00 0.00 0.00 3.09
521 820 5.296780 CCACTTATAGCCACATACAACAAGG 59.703 44.000 0.00 0.00 0.00 3.61
525 824 4.574828 CCACCACTTATAGCCACATACAAC 59.425 45.833 0.00 0.00 0.00 3.32
526 825 4.226394 ACCACCACTTATAGCCACATACAA 59.774 41.667 0.00 0.00 0.00 2.41
527 826 3.778075 ACCACCACTTATAGCCACATACA 59.222 43.478 0.00 0.00 0.00 2.29
528 827 4.417426 ACCACCACTTATAGCCACATAC 57.583 45.455 0.00 0.00 0.00 2.39
529 828 6.757173 ATAACCACCACTTATAGCCACATA 57.243 37.500 0.00 0.00 0.00 2.29
530 829 5.646692 ATAACCACCACTTATAGCCACAT 57.353 39.130 0.00 0.00 0.00 3.21
531 830 6.557253 AGATATAACCACCACTTATAGCCACA 59.443 38.462 0.00 0.00 0.00 4.17
535 1143 7.667557 TGTCAGATATAACCACCACTTATAGC 58.332 38.462 0.00 0.00 0.00 2.97
555 1163 8.986847 GCTGGCTATATAATATTGCTATGTCAG 58.013 37.037 0.00 4.38 0.00 3.51
562 1170 6.600822 CCAACTGCTGGCTATATAATATTGCT 59.399 38.462 0.00 0.00 38.76 3.91
580 1188 6.348540 GCATGGTTAATAGTATAGCCAACTGC 60.349 42.308 0.00 8.84 39.25 4.40
593 1201 6.815089 AGAGAGTTCAGAGCATGGTTAATAG 58.185 40.000 0.00 0.00 0.00 1.73
953 1783 5.872617 CAGTTGTCGGTTGGAACATATTCTA 59.127 40.000 0.00 0.00 39.30 2.10
954 1784 4.695455 CAGTTGTCGGTTGGAACATATTCT 59.305 41.667 0.00 0.00 39.30 2.40
998 1828 3.146847 GGTGCCACTGGTTTATATAGGC 58.853 50.000 0.00 0.00 40.93 3.93
1039 1869 0.179073 AGGTGCTGTCTGTGTGTGTC 60.179 55.000 0.00 0.00 0.00 3.67
1040 1870 0.462581 CAGGTGCTGTCTGTGTGTGT 60.463 55.000 0.00 0.00 0.00 3.72
1041 1871 1.779025 GCAGGTGCTGTCTGTGTGTG 61.779 60.000 0.00 0.00 38.21 3.82
1074 1906 0.804989 GTGGAGTTGGAGGATTTGCG 59.195 55.000 0.00 0.00 0.00 4.85
1177 2025 1.432270 GCAGCGAGTTAGCCATGGTC 61.432 60.000 14.67 5.80 38.01 4.02
1178 2026 1.450312 GCAGCGAGTTAGCCATGGT 60.450 57.895 14.67 2.69 38.01 3.55
1844 2716 4.335647 CACCCAGAAGGCGGCAGT 62.336 66.667 13.08 0.00 40.58 4.40
1935 2810 3.089284 TCCGTTCTAAGTGCAGATCTGA 58.911 45.455 27.04 8.75 0.00 3.27
2066 2942 1.813513 AGAACAGTTTGATCAGGCGG 58.186 50.000 0.00 0.00 0.00 6.13
2124 3000 9.200817 ACCAACCAAATATTGTTGCTTCTATAT 57.799 29.630 11.40 0.00 0.00 0.86
2125 3001 8.465999 CACCAACCAAATATTGTTGCTTCTATA 58.534 33.333 11.40 0.00 0.00 1.31
2188 3065 3.681417 TGCTCATTCACGACAGAAATCAG 59.319 43.478 0.00 0.00 0.00 2.90
2240 3117 6.552445 AGCATCTTAGAAGAGCTCCTAAAA 57.448 37.500 10.93 0.00 38.66 1.52
2292 3172 3.133721 AGAGGCACCATTAGCTGTTAGAG 59.866 47.826 0.00 0.00 0.00 2.43
2306 3186 2.784347 AGAGTTGCTTTAAGAGGCACC 58.216 47.619 0.00 0.00 38.23 5.01
2310 3190 7.546316 GGACTTTACTAGAGTTGCTTTAAGAGG 59.454 40.741 0.00 0.00 0.00 3.69
2317 3197 3.056035 CGGGGACTTTACTAGAGTTGCTT 60.056 47.826 0.00 0.00 0.00 3.91
2329 3209 3.770388 TCACACATATGACGGGGACTTTA 59.230 43.478 10.38 0.00 0.00 1.85
2339 3219 0.508641 GCGGCGATCACACATATGAC 59.491 55.000 12.98 0.00 0.00 3.06
2349 3229 0.813210 TATGTGCATTGCGGCGATCA 60.813 50.000 12.98 0.00 36.28 2.92
2357 3237 1.147557 GCCCGCTTTATGTGCATTGC 61.148 55.000 0.46 0.46 0.00 3.56
2365 3245 1.536709 GCAAATGGAGCCCGCTTTATG 60.537 52.381 0.00 0.00 0.00 1.90
2368 3248 1.259840 ATGCAAATGGAGCCCGCTTT 61.260 50.000 0.00 0.00 0.00 3.51
2411 3291 7.544566 GGTGAAGATATGACGACTTTGAGTTTA 59.455 37.037 0.00 0.00 0.00 2.01
2419 3299 5.661056 TGAAGGTGAAGATATGACGACTT 57.339 39.130 0.00 0.00 0.00 3.01
2488 3377 6.573664 TGCTTGACATGCTAAACATTTACT 57.426 33.333 13.81 0.00 36.64 2.24
2523 3412 3.077229 TCATGCAACCTGTCAAAAACG 57.923 42.857 0.00 0.00 0.00 3.60
2534 3423 7.430793 GGTTTAAATGTTTTTGTTCATGCAACC 59.569 33.333 0.00 0.00 33.51 3.77
2608 3500 0.040514 CAATGCACACGCCGAAGAAA 60.041 50.000 0.00 0.00 37.32 2.52
2613 3505 4.024143 GCACAATGCACACGCCGA 62.024 61.111 0.00 0.00 44.26 5.54
2631 3523 4.223953 ACCTCGAAGGATAGCAAAGGATA 58.776 43.478 7.76 0.00 37.67 2.59
2632 3524 3.041946 ACCTCGAAGGATAGCAAAGGAT 58.958 45.455 7.76 0.00 37.67 3.24
2633 3525 2.467880 ACCTCGAAGGATAGCAAAGGA 58.532 47.619 7.76 0.00 37.67 3.36
2634 3526 2.990066 ACCTCGAAGGATAGCAAAGG 57.010 50.000 7.76 0.00 37.67 3.11
2635 3527 2.860735 CGAACCTCGAAGGATAGCAAAG 59.139 50.000 7.76 0.00 43.74 2.77
2636 3528 2.232941 ACGAACCTCGAAGGATAGCAAA 59.767 45.455 2.59 0.00 43.74 3.68
2637 3529 1.822990 ACGAACCTCGAAGGATAGCAA 59.177 47.619 2.59 0.00 43.74 3.91
2638 3530 1.134367 CACGAACCTCGAAGGATAGCA 59.866 52.381 2.59 0.00 43.74 3.49
2639 3531 1.536284 CCACGAACCTCGAAGGATAGC 60.536 57.143 2.59 0.00 43.74 2.97
2640 3532 2.022195 TCCACGAACCTCGAAGGATAG 58.978 52.381 2.59 0.18 43.74 2.08
2641 3533 2.133281 TCCACGAACCTCGAAGGATA 57.867 50.000 2.59 0.00 43.74 2.59
2692 3584 3.680490 TGAATTCAGTGGTGCGGAAATA 58.320 40.909 3.38 0.00 35.10 1.40
2694 3586 1.974265 TGAATTCAGTGGTGCGGAAA 58.026 45.000 3.38 0.00 35.10 3.13
2696 3588 2.198827 AATGAATTCAGTGGTGCGGA 57.801 45.000 14.54 0.00 0.00 5.54
2711 3603 1.004161 TGTTGGATCCGAGCCAAATGA 59.996 47.619 19.51 4.49 46.18 2.57
2738 3630 4.769688 ACACATAATCGAGCAAAGATGGA 58.230 39.130 0.00 0.00 0.00 3.41
2743 3635 5.088739 GGAACAACACATAATCGAGCAAAG 58.911 41.667 0.00 0.00 0.00 2.77
2745 3637 3.438781 GGGAACAACACATAATCGAGCAA 59.561 43.478 0.00 0.00 0.00 3.91
2780 3672 1.135199 CGCGTAGGCTCCAACTTAAGA 60.135 52.381 10.09 0.00 36.88 2.10
2868 3760 1.195115 GGGCGAGATGGGATGCTATA 58.805 55.000 0.00 0.00 0.00 1.31
2909 3801 3.626670 ACATGAAGCAAAGCTAGAGATGC 59.373 43.478 0.00 0.00 38.25 3.91
2927 3822 6.152661 GGAGGGAGTATATGAGAAGAGACATG 59.847 46.154 0.00 0.00 0.00 3.21
2930 3825 4.698304 CGGAGGGAGTATATGAGAAGAGAC 59.302 50.000 0.00 0.00 0.00 3.36
2949 3844 3.067742 ACGTCTTACATTATGGTCCGGAG 59.932 47.826 3.06 0.00 0.00 4.63
2950 3845 3.025978 ACGTCTTACATTATGGTCCGGA 58.974 45.455 0.00 0.00 0.00 5.14
2951 3846 3.447918 ACGTCTTACATTATGGTCCGG 57.552 47.619 0.00 0.00 0.00 5.14
2952 3847 4.269363 GGAAACGTCTTACATTATGGTCCG 59.731 45.833 0.00 0.00 0.00 4.79
2953 3848 5.293569 CAGGAAACGTCTTACATTATGGTCC 59.706 44.000 0.00 0.00 0.00 4.46
2954 3849 6.035758 GTCAGGAAACGTCTTACATTATGGTC 59.964 42.308 0.00 0.00 0.00 4.02
2955 3850 5.873164 GTCAGGAAACGTCTTACATTATGGT 59.127 40.000 0.00 0.00 0.00 3.55
2956 3851 5.872617 TGTCAGGAAACGTCTTACATTATGG 59.127 40.000 0.00 0.00 0.00 2.74
2957 3852 6.590292 AGTGTCAGGAAACGTCTTACATTATG 59.410 38.462 0.00 0.00 0.00 1.90
2958 3853 6.698380 AGTGTCAGGAAACGTCTTACATTAT 58.302 36.000 0.00 0.00 0.00 1.28
2959 3854 6.092955 AGTGTCAGGAAACGTCTTACATTA 57.907 37.500 0.00 0.00 0.00 1.90
2960 3855 4.957296 AGTGTCAGGAAACGTCTTACATT 58.043 39.130 0.00 0.00 0.00 2.71
2961 3856 4.602340 AGTGTCAGGAAACGTCTTACAT 57.398 40.909 0.00 0.00 0.00 2.29
2962 3857 4.338964 TGTAGTGTCAGGAAACGTCTTACA 59.661 41.667 0.00 0.00 0.00 2.41
2963 3858 4.678742 GTGTAGTGTCAGGAAACGTCTTAC 59.321 45.833 0.00 0.00 0.00 2.34
2964 3859 4.581824 AGTGTAGTGTCAGGAAACGTCTTA 59.418 41.667 0.00 0.00 0.00 2.10
2965 3860 3.383825 AGTGTAGTGTCAGGAAACGTCTT 59.616 43.478 0.00 0.00 0.00 3.01
2966 3861 2.957006 AGTGTAGTGTCAGGAAACGTCT 59.043 45.455 0.00 0.00 0.00 4.18
2967 3862 3.366440 AGTGTAGTGTCAGGAAACGTC 57.634 47.619 0.00 0.00 0.00 4.34
2968 3863 4.139786 TCTAGTGTAGTGTCAGGAAACGT 58.860 43.478 0.00 0.00 0.00 3.99
2969 3864 4.215827 ACTCTAGTGTAGTGTCAGGAAACG 59.784 45.833 0.00 0.00 0.00 3.60
2970 3865 5.701855 GACTCTAGTGTAGTGTCAGGAAAC 58.298 45.833 10.03 0.00 44.48 2.78
2971 3866 5.961396 GACTCTAGTGTAGTGTCAGGAAA 57.039 43.478 10.03 0.00 44.48 3.13
2996 3891 9.799106 CCTCTATCCCATAATGTAAGACATTTT 57.201 33.333 9.92 0.33 45.80 1.82
2997 3892 9.170890 TCCTCTATCCCATAATGTAAGACATTT 57.829 33.333 9.92 0.00 45.80 2.32
2999 3894 8.742125 TTCCTCTATCCCATAATGTAAGACAT 57.258 34.615 0.00 0.00 41.31 3.06
3000 3895 7.789831 ACTTCCTCTATCCCATAATGTAAGACA 59.210 37.037 0.00 0.00 0.00 3.41
3001 3896 8.196378 ACTTCCTCTATCCCATAATGTAAGAC 57.804 38.462 0.00 0.00 0.00 3.01
3002 3897 9.310449 GTACTTCCTCTATCCCATAATGTAAGA 57.690 37.037 0.00 0.00 0.00 2.10
3003 3898 9.315363 AGTACTTCCTCTATCCCATAATGTAAG 57.685 37.037 0.00 0.00 0.00 2.34
3004 3899 9.670442 AAGTACTTCCTCTATCCCATAATGTAA 57.330 33.333 1.12 0.00 0.00 2.41
3005 3900 9.670442 AAAGTACTTCCTCTATCCCATAATGTA 57.330 33.333 8.95 0.00 0.00 2.29
3006 3901 8.568617 AAAGTACTTCCTCTATCCCATAATGT 57.431 34.615 8.95 0.00 0.00 2.71
3007 3902 8.875168 AGAAAGTACTTCCTCTATCCCATAATG 58.125 37.037 8.95 0.00 34.21 1.90
3008 3903 9.453830 AAGAAAGTACTTCCTCTATCCCATAAT 57.546 33.333 8.95 0.00 34.21 1.28
3009 3904 8.705594 CAAGAAAGTACTTCCTCTATCCCATAA 58.294 37.037 8.95 0.00 34.21 1.90
3010 3905 7.844779 ACAAGAAAGTACTTCCTCTATCCCATA 59.155 37.037 8.95 0.00 34.21 2.74
3011 3906 6.674419 ACAAGAAAGTACTTCCTCTATCCCAT 59.326 38.462 8.95 0.00 34.21 4.00
3012 3907 6.023603 ACAAGAAAGTACTTCCTCTATCCCA 58.976 40.000 8.95 0.00 34.21 4.37
3013 3908 6.407187 GGACAAGAAAGTACTTCCTCTATCCC 60.407 46.154 19.16 12.98 34.21 3.85
3014 3909 6.381707 AGGACAAGAAAGTACTTCCTCTATCC 59.618 42.308 20.73 20.73 34.21 2.59
3015 3910 7.412853 AGGACAAGAAAGTACTTCCTCTATC 57.587 40.000 8.95 9.93 34.21 2.08
3016 3911 7.235812 ACAAGGACAAGAAAGTACTTCCTCTAT 59.764 37.037 8.95 1.58 40.67 1.98
3017 3912 6.553852 ACAAGGACAAGAAAGTACTTCCTCTA 59.446 38.462 8.95 0.00 40.67 2.43
3018 3913 5.367060 ACAAGGACAAGAAAGTACTTCCTCT 59.633 40.000 8.95 6.29 40.67 3.69
3019 3914 5.612351 ACAAGGACAAGAAAGTACTTCCTC 58.388 41.667 8.95 3.80 40.67 3.71
3020 3915 5.130477 TGACAAGGACAAGAAAGTACTTCCT 59.870 40.000 8.95 7.16 40.67 3.36
3021 3916 5.365619 TGACAAGGACAAGAAAGTACTTCC 58.634 41.667 8.95 4.69 40.67 3.46
3022 3917 6.539103 AGTTGACAAGGACAAGAAAGTACTTC 59.461 38.462 8.95 2.91 40.67 3.01
3023 3918 6.415573 AGTTGACAAGGACAAGAAAGTACTT 58.584 36.000 1.12 1.12 43.38 2.24
3024 3919 5.990668 AGTTGACAAGGACAAGAAAGTACT 58.009 37.500 0.00 0.00 32.89 2.73
3025 3920 5.815740 TGAGTTGACAAGGACAAGAAAGTAC 59.184 40.000 0.00 0.00 0.00 2.73
3026 3921 5.984725 TGAGTTGACAAGGACAAGAAAGTA 58.015 37.500 0.00 0.00 0.00 2.24
3027 3922 4.843728 TGAGTTGACAAGGACAAGAAAGT 58.156 39.130 0.00 0.00 0.00 2.66
3028 3923 5.049129 GGATGAGTTGACAAGGACAAGAAAG 60.049 44.000 0.00 0.00 0.00 2.62
3029 3924 4.821805 GGATGAGTTGACAAGGACAAGAAA 59.178 41.667 0.00 0.00 0.00 2.52
3065 3960 0.616111 GAGAAGGAGAGGTGGAGGCA 60.616 60.000 0.00 0.00 0.00 4.75
3099 3994 1.067495 CGACAGGAGGAAGACTGGAAC 60.067 57.143 0.00 0.00 39.00 3.62
3102 3997 1.608717 CCCGACAGGAGGAAGACTGG 61.609 65.000 0.00 0.00 41.02 4.00
3123 4018 0.311165 CTGCCGTATAGGACAGGTCG 59.689 60.000 1.19 0.00 45.00 4.79
3131 4026 1.633774 ATCCCACTCTGCCGTATAGG 58.366 55.000 0.00 0.00 44.97 2.57
3139 4034 1.034292 GCCCAGAAATCCCACTCTGC 61.034 60.000 0.00 0.00 38.19 4.26
3141 4036 0.329596 GTGCCCAGAAATCCCACTCT 59.670 55.000 0.00 0.00 0.00 3.24
3142 4037 0.681243 GGTGCCCAGAAATCCCACTC 60.681 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.