Multiple sequence alignment - TraesCS1B01G255200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G255200 chr1B 100.000 3201 0 0 1 3201 449738580 449735380 0.000000e+00 5912
1 TraesCS1B01G255200 chr1B 91.919 792 44 5 2427 3200 54129639 54130428 0.000000e+00 1090
2 TraesCS1B01G255200 chr1B 77.961 726 132 18 1133 1844 449851594 449852305 2.280000e-116 429
3 TraesCS1B01G255200 chr1B 77.748 737 131 19 1126 1844 449977503 449978224 3.820000e-114 422
4 TraesCS1B01G255200 chr1B 83.793 290 35 8 2427 2704 624092423 624092134 6.810000e-67 265
5 TraesCS1B01G255200 chr1B 86.784 227 18 8 327 553 449743818 449743604 3.190000e-60 243
6 TraesCS1B01G255200 chr1B 95.238 105 5 0 699 803 572442172 572442068 1.980000e-37 167
7 TraesCS1B01G255200 chr1A 91.289 1102 59 9 813 1908 432213305 432212235 0.000000e+00 1469
8 TraesCS1B01G255200 chr1A 78.290 737 119 28 1126 1834 432485364 432486087 1.360000e-118 436
9 TraesCS1B01G255200 chr1A 78.159 728 115 25 1129 1834 432339280 432339985 1.060000e-114 424
10 TraesCS1B01G255200 chr1A 85.360 403 30 15 1981 2359 432212233 432211836 1.080000e-104 390
11 TraesCS1B01G255200 chr1D 89.333 1200 76 26 1089 2278 334336918 334335761 0.000000e+00 1459
12 TraesCS1B01G255200 chr1D 94.199 793 27 4 2427 3201 483047455 483048246 0.000000e+00 1192
13 TraesCS1B01G255200 chr1D 78.397 736 131 15 1126 1844 334451264 334451988 1.350000e-123 453
14 TraesCS1B01G255200 chr1D 90.179 336 16 2 2883 3201 481957621 481957286 3.820000e-114 422
15 TraesCS1B01G255200 chr1D 87.671 292 18 7 813 1096 334337227 334336946 1.110000e-84 324
16 TraesCS1B01G255200 chr1D 88.462 130 9 2 2285 2412 334248209 334248084 5.530000e-33 152
17 TraesCS1B01G255200 chr1D 92.405 79 6 0 553 631 334337771 334337693 2.610000e-21 113
18 TraesCS1B01G255200 chr7D 93.875 800 31 6 2419 3201 28854000 28853202 0.000000e+00 1190
19 TraesCS1B01G255200 chr7D 90.875 537 26 6 2685 3201 440004320 440003787 0.000000e+00 699
20 TraesCS1B01G255200 chr7D 89.921 506 47 3 2427 2929 602637133 602637637 0.000000e+00 649
21 TraesCS1B01G255200 chr6D 94.066 792 26 7 2427 3201 15380105 15379318 0.000000e+00 1182
22 TraesCS1B01G255200 chr6D 81.939 526 80 14 37 555 33995823 33995306 6.340000e-117 431
23 TraesCS1B01G255200 chr6D 94.444 108 6 0 696 803 249445798 249445905 1.980000e-37 167
24 TraesCS1B01G255200 chr6D 94.393 107 6 0 697 803 456557355 456557461 7.100000e-37 165
25 TraesCS1B01G255200 chr6D 79.348 184 20 14 200 375 356730321 356730494 2.610000e-21 113
26 TraesCS1B01G255200 chrUn 91.583 796 45 9 2427 3201 34133123 34133917 0.000000e+00 1079
27 TraesCS1B01G255200 chrUn 95.699 558 19 3 2427 2984 18797382 18797934 0.000000e+00 893
28 TraesCS1B01G255200 chrUn 95.109 184 8 1 3018 3201 18798413 18798595 4.040000e-74 289
29 TraesCS1B01G255200 chr7A 91.414 792 39 7 2427 3201 708601451 708600672 0.000000e+00 1059
30 TraesCS1B01G255200 chr7A 81.434 544 84 17 3 538 370812847 370813381 2.280000e-116 429
31 TraesCS1B01G255200 chr2D 88.166 507 56 3 2427 2929 220668362 220668868 4.570000e-168 601
32 TraesCS1B01G255200 chr5D 90.179 336 16 2 2883 3201 7032515 7032850 3.820000e-114 422
33 TraesCS1B01G255200 chr5D 91.525 118 6 3 689 803 399621830 399621946 3.310000e-35 159
34 TraesCS1B01G255200 chr4D 95.604 182 8 0 3018 3199 274468645 274468464 3.120000e-75 292
35 TraesCS1B01G255200 chr4D 96.154 104 4 0 700 803 441486708 441486811 1.530000e-38 171
36 TraesCS1B01G255200 chr5A 78.042 378 64 18 10 378 608618812 608619179 1.490000e-53 220
37 TraesCS1B01G255200 chr6B 76.590 393 60 29 1 378 558757005 558757380 1.520000e-43 187
38 TraesCS1B01G255200 chr6B 76.531 392 62 27 1 378 558839753 558840128 1.520000e-43 187
39 TraesCS1B01G255200 chr6B 76.684 386 57 29 8 378 266752589 266752222 1.960000e-42 183
40 TraesCS1B01G255200 chr7B 96.190 105 4 0 699 803 463050472 463050368 4.250000e-39 172
41 TraesCS1B01G255200 chr7B 96.154 104 4 0 700 803 420072690 420072793 1.530000e-38 171
42 TraesCS1B01G255200 chr7B 95.238 105 5 0 699 803 741544745 741544849 1.980000e-37 167
43 TraesCS1B01G255200 chr7B 78.919 185 21 12 200 375 60071423 60071598 3.380000e-20 110
44 TraesCS1B01G255200 chr5B 96.154 104 4 0 700 803 679351644 679351541 1.530000e-38 171
45 TraesCS1B01G255200 chr5B 75.645 349 62 22 1 338 607880287 607879951 5.530000e-33 152
46 TraesCS1B01G255200 chr5B 78.341 217 27 16 206 412 10161932 10162138 4.340000e-24 122
47 TraesCS1B01G255200 chr2A 85.714 133 12 6 207 335 120032090 120031961 2.000000e-27 134
48 TraesCS1B01G255200 chr3B 80.423 189 20 14 196 375 349292646 349292826 9.320000e-26 128
49 TraesCS1B01G255200 chr2B 84.211 133 15 5 206 335 530049211 530049340 1.210000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G255200 chr1B 449735380 449738580 3200 True 5912.0 5912 100.0000 1 3201 1 chr1B.!!$R1 3200
1 TraesCS1B01G255200 chr1B 54129639 54130428 789 False 1090.0 1090 91.9190 2427 3200 1 chr1B.!!$F1 773
2 TraesCS1B01G255200 chr1B 449851594 449852305 711 False 429.0 429 77.9610 1133 1844 1 chr1B.!!$F2 711
3 TraesCS1B01G255200 chr1B 449977503 449978224 721 False 422.0 422 77.7480 1126 1844 1 chr1B.!!$F3 718
4 TraesCS1B01G255200 chr1A 432211836 432213305 1469 True 929.5 1469 88.3245 813 2359 2 chr1A.!!$R1 1546
5 TraesCS1B01G255200 chr1A 432485364 432486087 723 False 436.0 436 78.2900 1126 1834 1 chr1A.!!$F2 708
6 TraesCS1B01G255200 chr1A 432339280 432339985 705 False 424.0 424 78.1590 1129 1834 1 chr1A.!!$F1 705
7 TraesCS1B01G255200 chr1D 483047455 483048246 791 False 1192.0 1192 94.1990 2427 3201 1 chr1D.!!$F2 774
8 TraesCS1B01G255200 chr1D 334335761 334337771 2010 True 632.0 1459 89.8030 553 2278 3 chr1D.!!$R3 1725
9 TraesCS1B01G255200 chr1D 334451264 334451988 724 False 453.0 453 78.3970 1126 1844 1 chr1D.!!$F1 718
10 TraesCS1B01G255200 chr7D 28853202 28854000 798 True 1190.0 1190 93.8750 2419 3201 1 chr7D.!!$R1 782
11 TraesCS1B01G255200 chr7D 440003787 440004320 533 True 699.0 699 90.8750 2685 3201 1 chr7D.!!$R2 516
12 TraesCS1B01G255200 chr7D 602637133 602637637 504 False 649.0 649 89.9210 2427 2929 1 chr7D.!!$F1 502
13 TraesCS1B01G255200 chr6D 15379318 15380105 787 True 1182.0 1182 94.0660 2427 3201 1 chr6D.!!$R1 774
14 TraesCS1B01G255200 chr6D 33995306 33995823 517 True 431.0 431 81.9390 37 555 1 chr6D.!!$R2 518
15 TraesCS1B01G255200 chrUn 34133123 34133917 794 False 1079.0 1079 91.5830 2427 3201 1 chrUn.!!$F1 774
16 TraesCS1B01G255200 chrUn 18797382 18798595 1213 False 591.0 893 95.4040 2427 3201 2 chrUn.!!$F2 774
17 TraesCS1B01G255200 chr7A 708600672 708601451 779 True 1059.0 1059 91.4140 2427 3201 1 chr7A.!!$R1 774
18 TraesCS1B01G255200 chr7A 370812847 370813381 534 False 429.0 429 81.4340 3 538 1 chr7A.!!$F1 535
19 TraesCS1B01G255200 chr2D 220668362 220668868 506 False 601.0 601 88.1660 2427 2929 1 chr2D.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 1078 0.036732 ACAGGACGTGACATTGCCAT 59.963 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2989 0.031616 TTTGAAACAGCCCACCCCTT 60.032 50.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.107661 CCAACACCGCCGTCGTAC 61.108 66.667 0.00 0.00 0.00 3.67
26 27 3.740397 CACCGCCGTCGTACCAGA 61.740 66.667 0.00 0.00 0.00 3.86
30 31 2.816360 CGCCGTCGTACCAGATCGA 61.816 63.158 0.00 0.00 0.00 3.59
81 83 2.812613 CGCCTCCAAGGACAAAAACCTA 60.813 50.000 0.00 0.00 37.67 3.08
88 90 4.082571 CCAAGGACAAAAACCTATGCTCTG 60.083 45.833 0.00 0.00 36.67 3.35
103 105 6.992123 CCTATGCTCTGTATACCAATTGTCAA 59.008 38.462 4.43 0.00 0.00 3.18
114 116 9.982651 GTATACCAATTGTCAAGATCTAGCTAA 57.017 33.333 4.43 0.00 0.00 3.09
131 133 7.418408 TCTAGCTAATACTGACACTGAATTCG 58.582 38.462 0.04 0.00 0.00 3.34
136 138 2.560504 ACTGACACTGAATTCGCACAA 58.439 42.857 0.04 0.00 0.00 3.33
139 141 4.036734 ACTGACACTGAATTCGCACAAAAT 59.963 37.500 0.04 0.00 0.00 1.82
146 148 3.191162 TGAATTCGCACAAAATCAGAGGG 59.809 43.478 0.04 0.00 0.00 4.30
149 151 2.857483 TCGCACAAAATCAGAGGGAAA 58.143 42.857 0.00 0.00 0.00 3.13
150 152 3.218453 TCGCACAAAATCAGAGGGAAAA 58.782 40.909 0.00 0.00 0.00 2.29
159 161 5.774498 AATCAGAGGGAAAACACTCAAAC 57.226 39.130 0.00 0.00 36.20 2.93
161 163 4.199310 TCAGAGGGAAAACACTCAAACTG 58.801 43.478 0.00 0.00 36.20 3.16
179 183 0.897863 TGTGGGGAATTTTGGGAGCG 60.898 55.000 0.00 0.00 0.00 5.03
190 194 3.848272 TTTGGGAGCGATTTCATTCAC 57.152 42.857 0.00 0.00 0.00 3.18
192 196 1.025041 GGGAGCGATTTCATTCACCC 58.975 55.000 0.00 0.00 0.00 4.61
193 197 1.681780 GGGAGCGATTTCATTCACCCA 60.682 52.381 0.00 0.00 36.47 4.51
194 198 1.672881 GGAGCGATTTCATTCACCCAG 59.327 52.381 0.00 0.00 0.00 4.45
196 200 1.281867 AGCGATTTCATTCACCCAGGA 59.718 47.619 0.00 0.00 0.00 3.86
197 201 2.092212 AGCGATTTCATTCACCCAGGAT 60.092 45.455 0.00 0.00 0.00 3.24
200 204 3.947196 CGATTTCATTCACCCAGGATGAA 59.053 43.478 0.00 0.00 39.69 2.57
204 208 2.025981 TCATTCACCCAGGATGAAGGTG 60.026 50.000 8.12 0.00 46.00 4.00
261 266 1.780503 GGCCAAGCCCAGATACAATT 58.219 50.000 0.00 0.00 44.06 2.32
262 267 1.683385 GGCCAAGCCCAGATACAATTC 59.317 52.381 0.00 0.00 44.06 2.17
264 269 2.360165 GCCAAGCCCAGATACAATTCAG 59.640 50.000 0.00 0.00 0.00 3.02
265 270 3.889815 CCAAGCCCAGATACAATTCAGA 58.110 45.455 0.00 0.00 0.00 3.27
267 272 4.096984 CCAAGCCCAGATACAATTCAGAAC 59.903 45.833 0.00 0.00 0.00 3.01
305 310 2.309162 GGAGGAGGGCTTAAAAGGAGTT 59.691 50.000 0.00 0.00 0.00 3.01
306 311 3.611970 GAGGAGGGCTTAAAAGGAGTTC 58.388 50.000 0.00 0.00 0.00 3.01
307 312 2.309162 AGGAGGGCTTAAAAGGAGTTCC 59.691 50.000 0.00 0.00 0.00 3.62
308 313 2.041216 GGAGGGCTTAAAAGGAGTTCCA 59.959 50.000 0.28 0.00 38.89 3.53
311 316 1.810755 GGCTTAAAAGGAGTTCCACGG 59.189 52.381 0.28 0.00 38.89 4.94
315 320 0.554305 AAAAGGAGTTCCACGGGGTT 59.446 50.000 2.12 0.00 38.89 4.11
324 332 3.329814 AGTTCCACGGGGTTAAAGAAGAT 59.670 43.478 2.12 0.00 34.93 2.40
338 346 5.401531 AAAGAAGATAGCGACAGGTACAA 57.598 39.130 0.00 0.00 32.67 2.41
343 351 7.203910 AGAAGATAGCGACAGGTACAATAAAG 58.796 38.462 0.00 0.00 32.67 1.85
351 359 5.607119 ACAGGTACAATAAAGCGACAAAG 57.393 39.130 0.00 0.00 0.00 2.77
352 360 5.061179 ACAGGTACAATAAAGCGACAAAGT 58.939 37.500 0.00 0.00 0.00 2.66
353 361 6.225318 ACAGGTACAATAAAGCGACAAAGTA 58.775 36.000 0.00 0.00 0.00 2.24
371 379 6.906678 ACAAAGTACGCGGTAACTTTTAAAAG 59.093 34.615 24.62 23.38 41.73 2.27
401 409 4.427394 GCTACAGCCGTCCATCTG 57.573 61.111 0.00 0.00 36.45 2.90
402 410 1.227380 GCTACAGCCGTCCATCTGG 60.227 63.158 0.00 0.00 34.76 3.86
412 420 0.179111 GTCCATCTGGCGATCAACGA 60.179 55.000 0.00 0.00 45.77 3.85
421 429 0.591741 GCGATCAACGACTACGGAGG 60.592 60.000 0.00 0.00 45.77 4.30
460 468 0.671251 GTATGAGTCTCCAGCCTCCG 59.329 60.000 0.00 0.00 0.00 4.63
475 483 2.999507 CTCCGTTAGATGGAGGATCG 57.000 55.000 8.09 0.00 45.57 3.69
483 491 0.744874 GATGGAGGATCGACGGTTGA 59.255 55.000 0.00 0.00 34.37 3.18
497 505 1.292223 GTTGACGCTAGTCCAGGCA 59.708 57.895 0.00 0.00 46.51 4.75
509 517 0.881118 TCCAGGCAAAACTGAATCGC 59.119 50.000 0.00 0.00 40.97 4.58
520 528 1.001974 ACTGAATCGCTACTGTGGCAA 59.998 47.619 16.46 0.00 0.00 4.52
524 532 1.668419 ATCGCTACTGTGGCAATTCC 58.332 50.000 16.46 0.00 0.00 3.01
525 533 0.613260 TCGCTACTGTGGCAATTCCT 59.387 50.000 16.46 0.00 35.26 3.36
549 557 0.320050 TGTCGACACATGCAAGCCTA 59.680 50.000 15.76 0.00 0.00 3.93
557 565 3.016031 CACATGCAAGCCTAACATGGTA 58.984 45.455 10.56 0.00 44.32 3.25
568 576 0.608130 AACATGGTAGTGCTGCGAGA 59.392 50.000 0.00 0.00 0.00 4.04
624 632 1.005450 GGGGCTTGATGTTCCCAACTA 59.995 52.381 0.00 0.00 41.85 2.24
627 635 3.769300 GGGCTTGATGTTCCCAACTATTT 59.231 43.478 0.00 0.00 39.82 1.40
636 1017 8.739039 TGATGTTCCCAACTATTTTTGATACAG 58.261 33.333 0.00 0.00 0.00 2.74
650 1031 6.528537 TTTGATACAGCTTAACATTGCCAT 57.471 33.333 0.00 0.00 0.00 4.40
689 1070 1.194772 GCAGCTTTTACAGGACGTGAC 59.805 52.381 0.00 0.00 0.00 3.67
692 1073 3.498397 CAGCTTTTACAGGACGTGACATT 59.502 43.478 0.00 0.00 0.00 2.71
693 1074 3.498397 AGCTTTTACAGGACGTGACATTG 59.502 43.478 0.00 0.00 0.00 2.82
695 1076 1.803334 TTACAGGACGTGACATTGCC 58.197 50.000 0.00 0.00 0.00 4.52
696 1077 0.682292 TACAGGACGTGACATTGCCA 59.318 50.000 0.00 0.00 0.00 4.92
697 1078 0.036732 ACAGGACGTGACATTGCCAT 59.963 50.000 0.00 0.00 0.00 4.40
701 1082 1.933853 GGACGTGACATTGCCATCTAC 59.066 52.381 0.00 0.00 0.00 2.59
703 1084 2.860735 GACGTGACATTGCCATCTACTC 59.139 50.000 0.00 0.00 0.00 2.59
705 1086 2.565841 GTGACATTGCCATCTACTCCC 58.434 52.381 0.00 0.00 0.00 4.30
712 1093 0.831307 GCCATCTACTCCCTCCGTTT 59.169 55.000 0.00 0.00 0.00 3.60
715 1096 2.108168 CATCTACTCCCTCCGTTTGGA 58.892 52.381 0.00 0.00 43.88 3.53
716 1097 2.314071 TCTACTCCCTCCGTTTGGAA 57.686 50.000 0.00 0.00 45.87 3.53
717 1098 2.829023 TCTACTCCCTCCGTTTGGAAT 58.171 47.619 0.00 0.00 45.87 3.01
719 1100 4.355549 TCTACTCCCTCCGTTTGGAATTA 58.644 43.478 0.00 0.00 45.87 1.40
721 1102 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
722 1103 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
723 1104 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
724 1105 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
725 1106 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
726 1107 3.124636 CCTCCGTTTGGAATTACTTGTCG 59.875 47.826 0.00 0.00 45.87 4.35
727 1108 3.731089 TCCGTTTGGAATTACTTGTCGT 58.269 40.909 0.00 0.00 42.85 4.34
728 1109 4.880759 TCCGTTTGGAATTACTTGTCGTA 58.119 39.130 0.00 0.00 42.85 3.43
729 1110 4.925054 TCCGTTTGGAATTACTTGTCGTAG 59.075 41.667 0.00 0.00 42.85 3.51
730 1111 4.925054 CCGTTTGGAATTACTTGTCGTAGA 59.075 41.667 0.00 0.00 37.49 2.59
731 1112 5.406175 CCGTTTGGAATTACTTGTCGTAGAA 59.594 40.000 0.00 0.00 35.71 2.10
732 1113 6.073657 CCGTTTGGAATTACTTGTCGTAGAAA 60.074 38.462 0.00 0.00 35.71 2.52
733 1114 7.360607 CCGTTTGGAATTACTTGTCGTAGAAAT 60.361 37.037 0.00 0.00 35.71 2.17
734 1115 8.649841 CGTTTGGAATTACTTGTCGTAGAAATA 58.350 33.333 0.00 0.00 39.69 1.40
735 1116 9.968743 GTTTGGAATTACTTGTCGTAGAAATAG 57.031 33.333 0.00 0.00 39.69 1.73
736 1117 9.932207 TTTGGAATTACTTGTCGTAGAAATAGA 57.068 29.630 0.00 0.00 39.69 1.98
738 1119 9.529325 TGGAATTACTTGTCGTAGAAATAGATG 57.471 33.333 0.00 0.00 39.69 2.90
739 1120 9.530633 GGAATTACTTGTCGTAGAAATAGATGT 57.469 33.333 0.00 0.00 39.69 3.06
748 1129 9.774413 TGTCGTAGAAATAGATGTATCTAGACA 57.226 33.333 0.00 9.57 39.84 3.41
770 1151 9.668497 AGACAATTTTTAGTTCTAGGTACATCC 57.332 33.333 0.00 0.00 0.00 3.51
771 1152 9.444600 GACAATTTTTAGTTCTAGGTACATCCA 57.555 33.333 0.00 0.00 39.02 3.41
772 1153 9.975218 ACAATTTTTAGTTCTAGGTACATCCAT 57.025 29.630 0.00 0.00 39.02 3.41
777 1158 9.667107 TTTTAGTTCTAGGTACATCCATTTCTG 57.333 33.333 0.00 0.00 39.02 3.02
778 1159 5.675538 AGTTCTAGGTACATCCATTTCTGC 58.324 41.667 0.00 0.00 39.02 4.26
779 1160 4.322080 TCTAGGTACATCCATTTCTGCG 57.678 45.455 0.00 0.00 39.02 5.18
780 1161 3.958147 TCTAGGTACATCCATTTCTGCGA 59.042 43.478 0.00 0.00 39.02 5.10
781 1162 2.906354 AGGTACATCCATTTCTGCGAC 58.094 47.619 0.00 0.00 39.02 5.19
782 1163 2.236146 AGGTACATCCATTTCTGCGACA 59.764 45.455 0.00 0.00 39.02 4.35
783 1164 3.006940 GGTACATCCATTTCTGCGACAA 58.993 45.455 0.00 0.00 35.97 3.18
784 1165 3.063997 GGTACATCCATTTCTGCGACAAG 59.936 47.826 0.00 0.00 35.97 3.16
785 1166 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
786 1167 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
787 1168 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
788 1169 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
789 1170 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
790 1171 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
791 1172 4.092821 TCCATTTCTGCGACAAGTAATTCG 59.907 41.667 0.00 0.00 38.31 3.34
792 1173 4.334443 CATTTCTGCGACAAGTAATTCGG 58.666 43.478 0.00 0.00 35.73 4.30
793 1174 2.004583 TCTGCGACAAGTAATTCGGG 57.995 50.000 0.00 0.00 35.73 5.14
794 1175 1.546923 TCTGCGACAAGTAATTCGGGA 59.453 47.619 0.00 0.00 35.73 5.14
795 1176 1.659098 CTGCGACAAGTAATTCGGGAC 59.341 52.381 0.00 0.00 35.73 4.46
826 1207 3.614390 CGAGGGAGTACAAGTTTCCACTC 60.614 52.174 0.00 1.85 37.32 3.51
827 1208 3.579151 GAGGGAGTACAAGTTTCCACTCT 59.421 47.826 0.00 0.00 37.99 3.24
849 1230 4.831107 TCACTGTGATCGAAATGGAATCA 58.169 39.130 6.36 0.00 0.00 2.57
852 1233 4.872691 ACTGTGATCGAAATGGAATCAGAC 59.127 41.667 0.00 0.00 0.00 3.51
855 1236 5.111989 GTGATCGAAATGGAATCAGACTCA 58.888 41.667 0.00 0.00 0.00 3.41
888 1269 2.738643 CGAGTCCATTACCGTGAGCAAT 60.739 50.000 0.00 0.00 0.00 3.56
928 1309 4.320456 CCTGCCTGCCACACGACT 62.320 66.667 0.00 0.00 0.00 4.18
953 1341 3.118371 GGCCTGTATAAACTAGTGCCACT 60.118 47.826 1.54 1.54 37.58 4.00
976 1364 5.192927 TGGCTCTGTATTTTCCCACATAAG 58.807 41.667 0.00 0.00 0.00 1.73
985 1373 1.890876 TCCCACATAAGCACACACAC 58.109 50.000 0.00 0.00 0.00 3.82
986 1374 1.141858 TCCCACATAAGCACACACACA 59.858 47.619 0.00 0.00 0.00 3.72
989 1377 2.286950 CCACATAAGCACACACACACAC 60.287 50.000 0.00 0.00 0.00 3.82
1002 1391 1.595382 ACACACAGCTTCGTCCAGC 60.595 57.895 0.00 0.00 40.44 4.85
1005 1394 2.925170 ACAGCTTCGTCCAGCCCT 60.925 61.111 0.00 0.00 41.12 5.19
1017 1406 0.614415 CCAGCCCTCTCTGACACTCT 60.614 60.000 0.00 0.00 36.19 3.24
1018 1407 1.265236 CAGCCCTCTCTGACACTCTT 58.735 55.000 0.00 0.00 36.19 2.85
1019 1408 1.067000 CAGCCCTCTCTGACACTCTTG 60.067 57.143 0.00 0.00 36.19 3.02
1020 1409 0.972883 GCCCTCTCTGACACTCTTGT 59.027 55.000 0.00 0.00 39.32 3.16
1021 1410 1.346068 GCCCTCTCTGACACTCTTGTT 59.654 52.381 0.00 0.00 35.47 2.83
1022 1411 2.563179 GCCCTCTCTGACACTCTTGTTA 59.437 50.000 0.00 0.00 35.47 2.41
1023 1412 3.367910 GCCCTCTCTGACACTCTTGTTAG 60.368 52.174 0.00 0.00 40.05 2.34
1078 1467 0.320771 CGCCGATCAAATCCCCTAGG 60.321 60.000 0.06 0.06 0.00 3.02
1097 1520 1.296715 CCGCCTAGTTCCACTGCTT 59.703 57.895 0.00 0.00 0.00 3.91
1148 1571 2.554142 TCTGCATTTCGCCATGACTAG 58.446 47.619 0.00 0.00 41.33 2.57
1150 1573 1.016627 GCATTTCGCCATGACTAGCA 58.983 50.000 0.00 0.00 32.94 3.49
1212 1635 0.682209 GGGGCTCTCTGTACGGTGTA 60.682 60.000 0.64 0.00 0.00 2.90
1242 1668 2.676471 AAATGCCAGCGTGTCCCC 60.676 61.111 0.00 0.00 0.00 4.81
1258 1684 4.388499 CCGTGGTACCGGCAGCTT 62.388 66.667 7.57 0.00 41.78 3.74
1794 2241 4.440829 GGCGGGAAATGGGAGCCA 62.441 66.667 0.00 0.00 46.48 4.75
1882 2332 5.826737 ACTGATGGATTTCCTGCTGAATTAG 59.173 40.000 0.00 0.00 36.82 1.73
1909 2359 5.362263 AGCTTTCAACATCAAATTTGCACT 58.638 33.333 13.54 0.00 0.00 4.40
1910 2360 5.235616 AGCTTTCAACATCAAATTTGCACTG 59.764 36.000 13.54 12.23 0.00 3.66
1911 2361 5.406767 TTTCAACATCAAATTTGCACTGC 57.593 34.783 13.54 0.00 0.00 4.40
1912 2362 4.325028 TCAACATCAAATTTGCACTGCT 57.675 36.364 13.54 0.11 0.00 4.24
1942 2392 1.066716 TGGCGATTACCCACTGTACAC 60.067 52.381 0.00 0.00 0.00 2.90
1946 2396 2.163010 CGATTACCCACTGTACACTCGT 59.837 50.000 0.00 0.00 0.00 4.18
1947 2397 3.374988 CGATTACCCACTGTACACTCGTA 59.625 47.826 0.00 0.00 0.00 3.43
1948 2398 4.666237 GATTACCCACTGTACACTCGTAC 58.334 47.826 0.00 0.00 46.94 3.67
1966 2416 4.767255 GGTCCACGAGCAGCTGGG 62.767 72.222 17.12 7.79 0.00 4.45
1970 2420 4.694233 CACGAGCAGCTGGGCACT 62.694 66.667 17.12 3.18 35.83 4.40
1971 2421 2.997315 ACGAGCAGCTGGGCACTA 60.997 61.111 17.12 0.00 35.83 2.74
1972 2422 2.362369 ACGAGCAGCTGGGCACTAT 61.362 57.895 17.12 0.00 35.83 2.12
1973 2423 1.153289 CGAGCAGCTGGGCACTATT 60.153 57.895 17.12 0.00 35.83 1.73
1974 2424 0.745845 CGAGCAGCTGGGCACTATTT 60.746 55.000 17.12 0.00 35.83 1.40
1975 2425 1.020437 GAGCAGCTGGGCACTATTTC 58.980 55.000 17.12 0.00 35.83 2.17
1976 2426 0.622665 AGCAGCTGGGCACTATTTCT 59.377 50.000 17.12 0.00 35.83 2.52
1977 2427 1.020437 GCAGCTGGGCACTATTTCTC 58.980 55.000 17.12 0.00 0.00 2.87
1978 2428 1.679944 GCAGCTGGGCACTATTTCTCA 60.680 52.381 17.12 0.00 0.00 3.27
1979 2429 2.715046 CAGCTGGGCACTATTTCTCAA 58.285 47.619 5.57 0.00 0.00 3.02
1980 2430 2.421424 CAGCTGGGCACTATTTCTCAAC 59.579 50.000 5.57 0.00 0.00 3.18
1981 2431 1.745653 GCTGGGCACTATTTCTCAACC 59.254 52.381 0.00 0.00 0.00 3.77
1982 2432 2.619074 GCTGGGCACTATTTCTCAACCT 60.619 50.000 0.00 0.00 0.00 3.50
1983 2433 3.012518 CTGGGCACTATTTCTCAACCTG 58.987 50.000 0.00 0.00 0.00 4.00
1984 2434 2.642311 TGGGCACTATTTCTCAACCTGA 59.358 45.455 0.00 0.00 0.00 3.86
1985 2435 3.274288 GGGCACTATTTCTCAACCTGAG 58.726 50.000 0.00 0.00 45.59 3.35
2004 2454 5.394005 CCTGAGAGAGATTTGTCAGAACGAT 60.394 44.000 2.16 0.00 39.04 3.73
2005 2455 5.405797 TGAGAGAGATTTGTCAGAACGATG 58.594 41.667 0.00 0.00 0.00 3.84
2006 2456 4.753233 AGAGAGATTTGTCAGAACGATGG 58.247 43.478 0.00 0.00 0.00 3.51
2027 2477 2.099141 TCAGCTGGTCTACATTGCAC 57.901 50.000 15.13 0.00 0.00 4.57
2028 2478 1.347378 TCAGCTGGTCTACATTGCACA 59.653 47.619 15.13 0.00 0.00 4.57
2030 2480 2.553602 CAGCTGGTCTACATTGCACAAA 59.446 45.455 5.57 0.00 0.00 2.83
2031 2481 3.192001 CAGCTGGTCTACATTGCACAAAT 59.808 43.478 5.57 0.00 0.00 2.32
2032 2482 4.395854 CAGCTGGTCTACATTGCACAAATA 59.604 41.667 5.57 0.00 0.00 1.40
2033 2483 4.637534 AGCTGGTCTACATTGCACAAATAG 59.362 41.667 0.00 0.00 0.00 1.73
2034 2484 4.201950 GCTGGTCTACATTGCACAAATAGG 60.202 45.833 0.00 0.00 0.00 2.57
2043 2504 7.502120 ACATTGCACAAATAGGATGTAGATC 57.498 36.000 0.00 0.00 0.00 2.75
2053 2514 8.997323 CAAATAGGATGTAGATCATGTTTCCTC 58.003 37.037 6.33 0.00 33.14 3.71
2056 2517 5.833667 AGGATGTAGATCATGTTTCCTCGTA 59.166 40.000 1.87 0.00 36.83 3.43
2063 2524 9.130312 GTAGATCATGTTTCCTCGTATTGTATC 57.870 37.037 0.00 0.00 0.00 2.24
2078 2540 7.695201 TCGTATTGTATCAACTCAAAGTCTACG 59.305 37.037 0.00 0.00 33.78 3.51
2085 2547 3.173668 ACTCAAAGTCTACGTTGCACA 57.826 42.857 0.00 0.00 35.73 4.57
2087 2549 3.181479 ACTCAAAGTCTACGTTGCACAGA 60.181 43.478 0.00 0.00 35.73 3.41
2124 2595 5.570234 TTTTTGTAGCGTCCTTTCTGTTT 57.430 34.783 0.00 0.00 0.00 2.83
2226 2699 7.259290 TCAGAATGTTTGGAAGTTGAAGTAC 57.741 36.000 0.00 0.00 37.40 2.73
2257 2731 1.388547 TTACCGCATGATGGGCTTTC 58.611 50.000 3.69 0.00 0.00 2.62
2263 2737 1.134907 GCATGATGGGCTTTCTGTTGG 60.135 52.381 0.00 0.00 0.00 3.77
2266 2740 2.676748 TGATGGGCTTTCTGTTGGTTT 58.323 42.857 0.00 0.00 0.00 3.27
2288 2762 6.443934 TTCCGTGTTATGTTGGGATTAATG 57.556 37.500 0.00 0.00 0.00 1.90
2312 2786 1.412710 TGATGATCTACGGTTGCCTCC 59.587 52.381 0.00 0.00 0.00 4.30
2340 2814 4.748892 CATAGGCTCGTATCCTTACATGG 58.251 47.826 0.00 0.00 35.21 3.66
2347 2821 5.345202 GCTCGTATCCTTACATGGATAAACG 59.655 44.000 10.73 10.73 46.84 3.60
2361 2835 8.639761 ACATGGATAAACGGTAGATATATAGCC 58.360 37.037 0.00 0.00 0.00 3.93
2362 2836 8.861086 CATGGATAAACGGTAGATATATAGCCT 58.139 37.037 1.19 0.00 0.00 4.58
2363 2837 8.234136 TGGATAAACGGTAGATATATAGCCTG 57.766 38.462 1.19 0.00 0.00 4.85
2364 2838 7.287005 TGGATAAACGGTAGATATATAGCCTGG 59.713 40.741 1.19 0.00 0.00 4.45
2365 2839 7.287235 GGATAAACGGTAGATATATAGCCTGGT 59.713 40.741 1.19 0.00 0.00 4.00
2366 2840 6.930068 AAACGGTAGATATATAGCCTGGTT 57.070 37.500 1.19 0.00 0.00 3.67
2367 2841 6.527057 AACGGTAGATATATAGCCTGGTTC 57.473 41.667 1.19 0.00 0.00 3.62
2368 2842 5.577100 ACGGTAGATATATAGCCTGGTTCA 58.423 41.667 1.19 0.00 0.00 3.18
2369 2843 6.014647 ACGGTAGATATATAGCCTGGTTCAA 58.985 40.000 1.19 0.00 0.00 2.69
2370 2844 6.071503 ACGGTAGATATATAGCCTGGTTCAAC 60.072 42.308 1.19 0.00 0.00 3.18
2371 2845 6.153000 CGGTAGATATATAGCCTGGTTCAACT 59.847 42.308 1.19 0.00 0.00 3.16
2372 2846 7.324178 GGTAGATATATAGCCTGGTTCAACTG 58.676 42.308 0.00 0.00 0.00 3.16
2373 2847 7.178628 GGTAGATATATAGCCTGGTTCAACTGA 59.821 40.741 0.00 0.00 0.00 3.41
2374 2848 7.238486 AGATATATAGCCTGGTTCAACTGAG 57.762 40.000 0.00 0.00 0.00 3.35
2375 2849 2.409948 ATAGCCTGGTTCAACTGAGC 57.590 50.000 0.00 0.00 0.00 4.26
2376 2850 0.324943 TAGCCTGGTTCAACTGAGCC 59.675 55.000 5.69 5.69 44.52 4.70
2381 2855 3.346426 GGTTCAACTGAGCCATGGT 57.654 52.632 14.67 0.00 43.82 3.55
2382 2856 1.620822 GGTTCAACTGAGCCATGGTT 58.379 50.000 14.67 7.37 43.82 3.67
2383 2857 1.541588 GGTTCAACTGAGCCATGGTTC 59.458 52.381 20.90 20.90 43.82 3.62
2384 2858 2.229792 GTTCAACTGAGCCATGGTTCA 58.770 47.619 27.30 27.30 34.34 3.18
2385 2859 2.622942 GTTCAACTGAGCCATGGTTCAA 59.377 45.455 28.50 13.79 35.07 2.69
2386 2860 2.229792 TCAACTGAGCCATGGTTCAAC 58.770 47.619 28.50 5.82 35.07 3.18
2387 2861 1.270550 CAACTGAGCCATGGTTCAACC 59.729 52.381 28.50 0.00 39.22 3.77
2401 2875 4.981794 GGTTCAACCAACTATACATGCAC 58.018 43.478 0.01 0.00 38.42 4.57
2402 2876 4.142469 GGTTCAACCAACTATACATGCACC 60.142 45.833 0.01 0.00 38.42 5.01
2403 2877 4.568072 TCAACCAACTATACATGCACCT 57.432 40.909 0.00 0.00 0.00 4.00
2404 2878 4.260985 TCAACCAACTATACATGCACCTG 58.739 43.478 0.00 0.00 0.00 4.00
2405 2879 4.019771 TCAACCAACTATACATGCACCTGA 60.020 41.667 0.00 0.00 0.00 3.86
2406 2880 4.778213 ACCAACTATACATGCACCTGAT 57.222 40.909 0.00 0.00 0.00 2.90
2407 2881 5.116084 ACCAACTATACATGCACCTGATT 57.884 39.130 0.00 0.00 0.00 2.57
2408 2882 5.126067 ACCAACTATACATGCACCTGATTC 58.874 41.667 0.00 0.00 0.00 2.52
2409 2883 5.104360 ACCAACTATACATGCACCTGATTCT 60.104 40.000 0.00 0.00 0.00 2.40
2410 2884 6.099701 ACCAACTATACATGCACCTGATTCTA 59.900 38.462 0.00 0.00 0.00 2.10
2411 2885 7.164122 CCAACTATACATGCACCTGATTCTAT 58.836 38.462 0.00 0.00 0.00 1.98
2412 2886 7.118825 CCAACTATACATGCACCTGATTCTATG 59.881 40.741 0.00 0.00 0.00 2.23
2413 2887 7.308450 ACTATACATGCACCTGATTCTATGT 57.692 36.000 0.00 0.00 33.74 2.29
2414 2888 7.382110 ACTATACATGCACCTGATTCTATGTC 58.618 38.462 0.00 0.00 31.84 3.06
2415 2889 3.461061 ACATGCACCTGATTCTATGTCG 58.539 45.455 0.00 0.00 0.00 4.35
2416 2890 2.602257 TGCACCTGATTCTATGTCGG 57.398 50.000 0.00 0.00 0.00 4.79
2417 2891 1.221414 GCACCTGATTCTATGTCGGC 58.779 55.000 0.00 0.00 0.00 5.54
2418 2892 1.473257 GCACCTGATTCTATGTCGGCA 60.473 52.381 0.00 0.00 0.00 5.69
2419 2893 2.808202 GCACCTGATTCTATGTCGGCAT 60.808 50.000 8.02 8.02 39.03 4.40
2420 2894 2.804527 CACCTGATTCTATGTCGGCATG 59.195 50.000 13.98 2.80 36.58 4.06
2421 2895 2.700371 ACCTGATTCTATGTCGGCATGA 59.300 45.455 13.98 5.39 36.58 3.07
2422 2896 3.134623 ACCTGATTCTATGTCGGCATGAA 59.865 43.478 13.98 14.18 36.58 2.57
2423 2897 3.496130 CCTGATTCTATGTCGGCATGAAC 59.504 47.826 13.98 9.39 36.58 3.18
2424 2898 3.123050 TGATTCTATGTCGGCATGAACG 58.877 45.455 13.98 0.00 36.58 3.95
2425 2899 2.951457 TTCTATGTCGGCATGAACGA 57.049 45.000 13.98 8.58 36.58 3.85
2517 2996 4.700213 CAGATAACTACCAAACAAGGGGTG 59.300 45.833 0.00 0.00 38.06 4.61
3138 4075 2.122167 CCGACTAGAGAAGCCCGCT 61.122 63.158 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.313717 TTCGATCTGGTACGACGGCG 62.314 60.000 10.39 10.39 44.79 6.46
14 15 0.731417 ACTTCGATCTGGTACGACGG 59.269 55.000 0.00 0.00 38.24 4.79
17 18 2.014857 CTGGACTTCGATCTGGTACGA 58.985 52.381 0.00 0.00 36.75 3.43
20 21 3.885901 CTGATCTGGACTTCGATCTGGTA 59.114 47.826 0.00 0.00 37.51 3.25
22 23 2.954989 TCTGATCTGGACTTCGATCTGG 59.045 50.000 0.00 0.00 37.51 3.86
81 83 6.653020 TCTTGACAATTGGTATACAGAGCAT 58.347 36.000 10.83 0.00 0.00 3.79
88 90 9.982651 TTAGCTAGATCTTGACAATTGGTATAC 57.017 33.333 10.83 0.00 0.00 1.47
103 105 8.704849 ATTCAGTGTCAGTATTAGCTAGATCT 57.295 34.615 0.00 0.00 0.00 2.75
114 116 3.925379 TGTGCGAATTCAGTGTCAGTAT 58.075 40.909 6.22 0.00 0.00 2.12
115 117 3.378911 TGTGCGAATTCAGTGTCAGTA 57.621 42.857 6.22 0.00 0.00 2.74
131 133 4.051237 GTGTTTTCCCTCTGATTTTGTGC 58.949 43.478 0.00 0.00 0.00 4.57
136 138 5.893824 AGTTTGAGTGTTTTCCCTCTGATTT 59.106 36.000 0.00 0.00 0.00 2.17
139 141 4.199310 CAGTTTGAGTGTTTTCCCTCTGA 58.801 43.478 0.00 0.00 0.00 3.27
146 148 3.020984 TCCCCACAGTTTGAGTGTTTTC 58.979 45.455 0.00 0.00 35.24 2.29
149 151 2.818751 TTCCCCACAGTTTGAGTGTT 57.181 45.000 0.00 0.00 35.24 3.32
150 152 3.312736 AATTCCCCACAGTTTGAGTGT 57.687 42.857 0.00 0.00 35.24 3.55
159 161 0.897621 GCTCCCAAAATTCCCCACAG 59.102 55.000 0.00 0.00 0.00 3.66
161 163 0.610785 TCGCTCCCAAAATTCCCCAC 60.611 55.000 0.00 0.00 0.00 4.61
179 183 4.340381 CCTTCATCCTGGGTGAATGAAATC 59.660 45.833 21.98 0.00 35.26 2.17
190 194 0.471617 CTAGCCACCTTCATCCTGGG 59.528 60.000 0.00 0.00 0.00 4.45
192 196 0.471617 CCCTAGCCACCTTCATCCTG 59.528 60.000 0.00 0.00 0.00 3.86
193 197 0.044855 ACCCTAGCCACCTTCATCCT 59.955 55.000 0.00 0.00 0.00 3.24
194 198 0.919710 AACCCTAGCCACCTTCATCC 59.080 55.000 0.00 0.00 0.00 3.51
196 200 2.618045 CGAAAACCCTAGCCACCTTCAT 60.618 50.000 0.00 0.00 0.00 2.57
197 201 1.271163 CGAAAACCCTAGCCACCTTCA 60.271 52.381 0.00 0.00 0.00 3.02
200 204 1.002502 GCGAAAACCCTAGCCACCT 60.003 57.895 0.00 0.00 0.00 4.00
254 259 3.432326 GGAGAGGGCGTTCTGAATTGTAT 60.432 47.826 0.00 0.00 0.00 2.29
261 266 1.118965 TTGTGGAGAGGGCGTTCTGA 61.119 55.000 0.00 0.00 0.00 3.27
262 267 0.671781 CTTGTGGAGAGGGCGTTCTG 60.672 60.000 0.00 0.00 0.00 3.02
264 269 2.035442 GCTTGTGGAGAGGGCGTTC 61.035 63.158 0.00 0.00 0.00 3.95
265 270 2.032681 GCTTGTGGAGAGGGCGTT 59.967 61.111 0.00 0.00 0.00 4.84
289 294 2.552373 CGTGGAACTCCTTTTAAGCCCT 60.552 50.000 0.00 0.00 36.82 5.19
291 296 1.810755 CCGTGGAACTCCTTTTAAGCC 59.189 52.381 0.00 0.00 36.82 4.35
305 310 3.118519 GCTATCTTCTTTAACCCCGTGGA 60.119 47.826 0.00 0.00 34.81 4.02
306 311 3.203716 GCTATCTTCTTTAACCCCGTGG 58.796 50.000 0.00 0.00 37.80 4.94
307 312 2.864343 CGCTATCTTCTTTAACCCCGTG 59.136 50.000 0.00 0.00 0.00 4.94
308 313 2.762327 TCGCTATCTTCTTTAACCCCGT 59.238 45.455 0.00 0.00 0.00 5.28
311 316 4.120589 CCTGTCGCTATCTTCTTTAACCC 58.879 47.826 0.00 0.00 0.00 4.11
315 320 6.519679 TTGTACCTGTCGCTATCTTCTTTA 57.480 37.500 0.00 0.00 0.00 1.85
324 332 3.129113 TCGCTTTATTGTACCTGTCGCTA 59.871 43.478 0.00 0.00 0.00 4.26
351 359 7.114953 ACTCTACTTTTAAAAGTTACCGCGTAC 59.885 37.037 32.37 0.00 46.52 3.67
352 360 7.114811 CACTCTACTTTTAAAAGTTACCGCGTA 59.885 37.037 32.37 15.08 46.52 4.42
353 361 5.985530 ACTCTACTTTTAAAAGTTACCGCGT 59.014 36.000 32.37 19.49 46.52 6.01
371 379 3.270962 GCTGTAGCCGTATCACTCTAC 57.729 52.381 0.00 0.00 34.31 2.59
400 408 1.138036 CCGTAGTCGTTGATCGCCA 59.862 57.895 0.00 0.00 39.67 5.69
401 409 0.591741 CTCCGTAGTCGTTGATCGCC 60.592 60.000 0.00 0.00 39.67 5.54
402 410 0.591741 CCTCCGTAGTCGTTGATCGC 60.592 60.000 0.00 0.00 39.67 4.58
403 411 0.591741 GCCTCCGTAGTCGTTGATCG 60.592 60.000 0.00 0.00 41.41 3.69
450 458 0.032515 TCCATCTAACGGAGGCTGGA 60.033 55.000 0.00 7.35 35.95 3.86
460 468 1.955080 ACCGTCGATCCTCCATCTAAC 59.045 52.381 0.00 0.00 0.00 2.34
470 478 0.591741 CTAGCGTCAACCGTCGATCC 60.592 60.000 0.00 0.00 39.32 3.36
475 483 0.456312 CTGGACTAGCGTCAACCGTC 60.456 60.000 0.00 0.00 42.05 4.79
483 491 0.396811 AGTTTTGCCTGGACTAGCGT 59.603 50.000 0.00 0.00 0.00 5.07
486 494 3.372206 CGATTCAGTTTTGCCTGGACTAG 59.628 47.826 0.00 0.00 33.14 2.57
488 496 2.154462 CGATTCAGTTTTGCCTGGACT 58.846 47.619 0.00 0.00 33.14 3.85
493 501 2.744202 CAGTAGCGATTCAGTTTTGCCT 59.256 45.455 0.00 0.00 0.00 4.75
497 505 2.484264 GCCACAGTAGCGATTCAGTTTT 59.516 45.455 0.00 0.00 0.00 2.43
509 517 2.783135 ACACAGGAATTGCCACAGTAG 58.217 47.619 0.00 0.00 40.02 2.57
538 546 3.065786 CACTACCATGTTAGGCTTGCATG 59.934 47.826 18.25 18.25 39.54 4.06
539 547 3.282021 CACTACCATGTTAGGCTTGCAT 58.718 45.455 2.07 0.00 0.00 3.96
540 548 2.710377 CACTACCATGTTAGGCTTGCA 58.290 47.619 2.07 0.00 0.00 4.08
544 552 1.407437 GCAGCACTACCATGTTAGGCT 60.407 52.381 2.07 5.08 0.00 4.58
549 557 0.608130 TCTCGCAGCACTACCATGTT 59.392 50.000 0.00 0.00 0.00 2.71
557 565 1.498865 CGTTGGTTTCTCGCAGCACT 61.499 55.000 0.00 0.00 0.00 4.40
568 576 1.161563 ATCGTTGACGCCGTTGGTTT 61.162 50.000 0.00 0.00 39.60 3.27
603 611 1.078347 TTGGGAACATCAAGCCCCC 59.922 57.895 0.00 0.00 41.31 5.40
608 616 9.573133 GTATCAAAAATAGTTGGGAACATCAAG 57.427 33.333 0.00 0.00 42.32 3.02
624 632 7.385267 TGGCAATGTTAAGCTGTATCAAAAAT 58.615 30.769 0.00 0.00 0.00 1.82
627 635 5.973899 TGGCAATGTTAAGCTGTATCAAA 57.026 34.783 0.00 0.00 0.00 2.69
667 1048 2.297880 TCACGTCCTGTAAAAGCTGCTA 59.702 45.455 0.90 0.00 0.00 3.49
668 1049 1.070134 TCACGTCCTGTAAAAGCTGCT 59.930 47.619 0.00 0.00 0.00 4.24
681 1062 1.933853 GTAGATGGCAATGTCACGTCC 59.066 52.381 0.00 0.00 0.00 4.79
689 1070 1.270518 CGGAGGGAGTAGATGGCAATG 60.271 57.143 0.00 0.00 0.00 2.82
692 1073 0.325296 AACGGAGGGAGTAGATGGCA 60.325 55.000 0.00 0.00 0.00 4.92
693 1074 0.831307 AAACGGAGGGAGTAGATGGC 59.169 55.000 0.00 0.00 0.00 4.40
695 1076 2.108168 TCCAAACGGAGGGAGTAGATG 58.892 52.381 0.00 0.00 0.00 2.90
696 1077 2.544844 TCCAAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
697 1078 2.314071 TTCCAAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 34.02 2.59
701 1082 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
703 1084 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
705 1086 3.744426 ACGACAAGTAATTCCAAACGGAG 59.256 43.478 0.00 0.00 32.88 4.63
712 1093 9.529325 CATCTATTTCTACGACAAGTAATTCCA 57.471 33.333 0.00 0.00 34.45 3.53
722 1103 9.774413 TGTCTAGATACATCTATTTCTACGACA 57.226 33.333 0.00 9.44 38.60 4.35
744 1125 9.668497 GGATGTACCTAGAACTAAAAATTGTCT 57.332 33.333 0.00 0.00 35.41 3.41
745 1126 9.444600 TGGATGTACCTAGAACTAAAAATTGTC 57.555 33.333 0.00 0.00 39.86 3.18
746 1127 9.975218 ATGGATGTACCTAGAACTAAAAATTGT 57.025 29.630 0.00 0.00 39.86 2.71
751 1132 9.667107 CAGAAATGGATGTACCTAGAACTAAAA 57.333 33.333 0.00 0.00 39.86 1.52
752 1133 7.769044 GCAGAAATGGATGTACCTAGAACTAAA 59.231 37.037 0.00 0.00 39.86 1.85
753 1134 7.272978 GCAGAAATGGATGTACCTAGAACTAA 58.727 38.462 0.00 0.00 39.86 2.24
754 1135 6.461092 CGCAGAAATGGATGTACCTAGAACTA 60.461 42.308 0.00 0.00 39.86 2.24
755 1136 5.675538 GCAGAAATGGATGTACCTAGAACT 58.324 41.667 0.00 0.00 39.86 3.01
756 1137 4.508124 CGCAGAAATGGATGTACCTAGAAC 59.492 45.833 0.00 0.00 39.86 3.01
757 1138 4.404394 TCGCAGAAATGGATGTACCTAGAA 59.596 41.667 0.00 0.00 39.86 2.10
758 1139 3.958147 TCGCAGAAATGGATGTACCTAGA 59.042 43.478 0.00 0.00 39.86 2.43
759 1140 4.051922 GTCGCAGAAATGGATGTACCTAG 58.948 47.826 0.00 0.00 39.69 3.02
760 1141 3.449377 TGTCGCAGAAATGGATGTACCTA 59.551 43.478 0.00 0.00 39.69 3.08
761 1142 2.236146 TGTCGCAGAAATGGATGTACCT 59.764 45.455 0.00 0.00 39.69 3.08
762 1143 2.627945 TGTCGCAGAAATGGATGTACC 58.372 47.619 0.00 0.00 39.69 3.34
763 1144 3.684788 ACTTGTCGCAGAAATGGATGTAC 59.315 43.478 0.00 0.00 39.69 2.90
764 1145 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
765 1146 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
766 1147 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
767 1148 5.220662 CGAATTACTTGTCGCAGAAATGGAT 60.221 40.000 0.00 0.00 39.69 3.41
768 1149 4.092821 CGAATTACTTGTCGCAGAAATGGA 59.907 41.667 0.00 0.00 39.69 3.41
769 1150 4.334443 CGAATTACTTGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
770 1151 4.334443 CCGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
771 1152 3.374058 CCCGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
772 1153 2.739913 CCCGAATTACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
773 1154 2.028839 TCCCGAATTACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
774 1155 1.546923 TCCCGAATTACTTGTCGCAGA 59.453 47.619 0.00 0.00 35.93 4.26
775 1156 1.659098 GTCCCGAATTACTTGTCGCAG 59.341 52.381 0.00 0.00 35.93 5.18
776 1157 1.717194 GTCCCGAATTACTTGTCGCA 58.283 50.000 0.00 0.00 35.93 5.10
777 1158 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
778 1159 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
779 1160 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
780 1161 1.206371 CCTCCGTCCCGAATTACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
781 1162 1.472728 CCCTCCGTCCCGAATTACTTG 60.473 57.143 0.00 0.00 0.00 3.16
782 1163 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
783 1164 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
784 1165 0.103755 GTCCCTCCGTCCCGAATTAC 59.896 60.000 0.00 0.00 0.00 1.89
785 1166 1.044790 GGTCCCTCCGTCCCGAATTA 61.045 60.000 0.00 0.00 0.00 1.40
786 1167 2.364780 GGTCCCTCCGTCCCGAATT 61.365 63.158 0.00 0.00 0.00 2.17
787 1168 2.762875 GGTCCCTCCGTCCCGAAT 60.763 66.667 0.00 0.00 0.00 3.34
796 1177 1.455402 GTACTCCCTCGGTCCCTCC 60.455 68.421 0.00 0.00 0.00 4.30
797 1178 0.324091 TTGTACTCCCTCGGTCCCTC 60.324 60.000 0.00 0.00 0.00 4.30
798 1179 0.324460 CTTGTACTCCCTCGGTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
799 1180 0.614134 ACTTGTACTCCCTCGGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
800 1181 1.264295 AACTTGTACTCCCTCGGTCC 58.736 55.000 0.00 0.00 0.00 4.46
801 1182 2.353505 GGAAACTTGTACTCCCTCGGTC 60.354 54.545 0.00 0.00 0.00 4.79
802 1183 1.622312 GGAAACTTGTACTCCCTCGGT 59.378 52.381 0.00 0.00 0.00 4.69
803 1184 1.621814 TGGAAACTTGTACTCCCTCGG 59.378 52.381 0.00 0.00 0.00 4.63
804 1185 2.299297 AGTGGAAACTTGTACTCCCTCG 59.701 50.000 0.00 0.00 0.00 4.63
805 1186 3.579151 AGAGTGGAAACTTGTACTCCCTC 59.421 47.826 0.00 2.18 40.21 4.30
806 1187 3.579151 GAGAGTGGAAACTTGTACTCCCT 59.421 47.826 0.00 0.00 40.21 4.20
807 1188 3.323979 TGAGAGTGGAAACTTGTACTCCC 59.676 47.826 0.00 0.00 40.21 4.30
808 1189 4.039366 AGTGAGAGTGGAAACTTGTACTCC 59.961 45.833 0.00 0.00 40.21 3.85
809 1190 4.985409 CAGTGAGAGTGGAAACTTGTACTC 59.015 45.833 0.00 0.00 39.77 2.59
810 1191 4.406003 ACAGTGAGAGTGGAAACTTGTACT 59.594 41.667 0.00 0.00 0.00 2.73
811 1192 4.508124 CACAGTGAGAGTGGAAACTTGTAC 59.492 45.833 0.00 0.00 33.43 2.90
826 1207 4.872124 TGATTCCATTTCGATCACAGTGAG 59.128 41.667 9.64 0.00 0.00 3.51
827 1208 4.831107 TGATTCCATTTCGATCACAGTGA 58.169 39.130 5.50 5.50 0.00 3.41
849 1230 1.247419 CGTGGTGGCTCTCTGAGTCT 61.247 60.000 4.32 0.00 35.05 3.24
852 1233 1.247419 ACTCGTGGTGGCTCTCTGAG 61.247 60.000 0.00 0.00 0.00 3.35
855 1236 1.979693 GGACTCGTGGTGGCTCTCT 60.980 63.158 0.00 0.00 0.00 3.10
888 1269 4.466015 GGGCAAAGATTCTTCCAAATGGTA 59.534 41.667 0.00 0.00 36.34 3.25
928 1309 2.740580 GCACTAGTTTATACAGGCCGCA 60.741 50.000 0.00 0.00 0.00 5.69
953 1341 3.737559 ATGTGGGAAAATACAGAGCCA 57.262 42.857 0.00 0.00 0.00 4.75
976 1364 0.248215 GAAGCTGTGTGTGTGTGTGC 60.248 55.000 0.00 0.00 0.00 4.57
985 1373 2.320587 GGCTGGACGAAGCTGTGTG 61.321 63.158 8.86 0.00 43.06 3.82
986 1374 2.031163 GGCTGGACGAAGCTGTGT 59.969 61.111 8.86 0.00 43.06 3.72
989 1377 2.125350 GAGGGCTGGACGAAGCTG 60.125 66.667 8.86 0.00 43.06 4.24
1002 1391 3.829601 ACTAACAAGAGTGTCAGAGAGGG 59.170 47.826 0.00 0.00 36.80 4.30
1005 1394 5.854010 ACAACTAACAAGAGTGTCAGAGA 57.146 39.130 0.00 0.00 36.80 3.10
1017 1406 4.590918 TCCACCACAAGAACAACTAACAA 58.409 39.130 0.00 0.00 0.00 2.83
1018 1407 4.223556 TCCACCACAAGAACAACTAACA 57.776 40.909 0.00 0.00 0.00 2.41
1019 1408 4.201980 GGTTCCACCACAAGAACAACTAAC 60.202 45.833 5.37 0.00 43.37 2.34
1020 1409 3.949113 GGTTCCACCACAAGAACAACTAA 59.051 43.478 5.37 0.00 43.37 2.24
1021 1410 3.201266 AGGTTCCACCACAAGAACAACTA 59.799 43.478 5.37 0.00 43.37 2.24
1022 1411 2.025321 AGGTTCCACCACAAGAACAACT 60.025 45.455 5.37 0.00 43.37 3.16
1023 1412 2.357952 GAGGTTCCACCACAAGAACAAC 59.642 50.000 5.37 0.00 43.37 3.32
1097 1520 2.885266 GGATACCGCAGATAGAGTGTCA 59.115 50.000 0.00 0.00 0.00 3.58
1148 1571 3.106407 GTGAGTCGAGCACGGTGC 61.106 66.667 25.00 25.00 45.46 5.01
1150 1573 2.910479 TGGTGAGTCGAGCACGGT 60.910 61.111 3.11 0.00 40.21 4.83
1212 1635 3.493176 GCTGGCATTTCAAAGGTTCTTGT 60.493 43.478 0.00 0.00 0.00 3.16
1242 1668 2.813908 GAAGCTGCCGGTACCACG 60.814 66.667 13.54 1.76 0.00 4.94
1258 1684 0.973632 TACGCTGGCTTCTTCTTGGA 59.026 50.000 0.00 0.00 0.00 3.53
1393 1828 0.616111 TCCTCCTCTTGCTCCCTGTC 60.616 60.000 0.00 0.00 0.00 3.51
1394 1829 0.617249 CTCCTCCTCTTGCTCCCTGT 60.617 60.000 0.00 0.00 0.00 4.00
1395 1830 1.336632 CCTCCTCCTCTTGCTCCCTG 61.337 65.000 0.00 0.00 0.00 4.45
1396 1831 1.002792 CCTCCTCCTCTTGCTCCCT 59.997 63.158 0.00 0.00 0.00 4.20
1397 1832 1.002274 TCCTCCTCCTCTTGCTCCC 59.998 63.158 0.00 0.00 0.00 4.30
1398 1833 0.032615 TCTCCTCCTCCTCTTGCTCC 60.033 60.000 0.00 0.00 0.00 4.70
1404 1842 1.958069 GCTTTCGTCTCCTCCTCCTCT 60.958 57.143 0.00 0.00 0.00 3.69
1521 1959 1.669440 GTACACTTCCAGCCGTCCA 59.331 57.895 0.00 0.00 0.00 4.02
1524 1962 2.048503 GCGTACACTTCCAGCCGT 60.049 61.111 0.00 0.00 0.00 5.68
1807 2254 2.351276 GATGGCCACCCAGAACGT 59.649 61.111 8.16 0.00 46.24 3.99
1846 2293 3.851458 TCCATCAGTACTACTAGGCGA 57.149 47.619 0.00 0.00 0.00 5.54
1849 2296 6.517529 GCAGGAAATCCATCAGTACTACTAGG 60.518 46.154 0.00 0.00 38.89 3.02
1882 2332 6.131389 GCAAATTTGATGTTGAAAGCTTCAC 58.869 36.000 22.31 0.00 39.87 3.18
1909 2359 1.704641 ATCGCCAGATACTACCAGCA 58.295 50.000 0.00 0.00 34.85 4.41
1910 2360 2.821991 AATCGCCAGATACTACCAGC 57.178 50.000 0.00 0.00 35.74 4.85
1911 2361 3.056749 GGGTAATCGCCAGATACTACCAG 60.057 52.174 10.00 0.00 39.96 4.00
1912 2362 2.895404 GGGTAATCGCCAGATACTACCA 59.105 50.000 10.00 0.00 39.96 3.25
1946 2396 2.675423 AGCTGCTCGTGGACCGTA 60.675 61.111 0.00 0.00 37.94 4.02
1947 2397 4.363990 CAGCTGCTCGTGGACCGT 62.364 66.667 0.00 0.00 37.94 4.83
1949 2399 4.767255 CCCAGCTGCTCGTGGACC 62.767 72.222 8.66 0.00 35.67 4.46
1953 2403 2.584261 ATAGTGCCCAGCTGCTCGTG 62.584 60.000 8.66 0.00 0.00 4.35
1963 2413 2.642311 TCAGGTTGAGAAATAGTGCCCA 59.358 45.455 0.00 0.00 0.00 5.36
1964 2414 3.350219 TCAGGTTGAGAAATAGTGCCC 57.650 47.619 0.00 0.00 0.00 5.36
1975 2425 5.047448 TCTGACAAATCTCTCTCAGGTTGAG 60.047 44.000 0.00 0.00 45.59 3.02
1976 2426 4.835056 TCTGACAAATCTCTCTCAGGTTGA 59.165 41.667 0.00 0.00 32.52 3.18
1977 2427 5.144692 TCTGACAAATCTCTCTCAGGTTG 57.855 43.478 0.00 0.00 32.52 3.77
1978 2428 5.546526 GTTCTGACAAATCTCTCTCAGGTT 58.453 41.667 0.00 0.00 32.52 3.50
1979 2429 4.321601 CGTTCTGACAAATCTCTCTCAGGT 60.322 45.833 0.00 0.00 32.52 4.00
1980 2430 4.082517 TCGTTCTGACAAATCTCTCTCAGG 60.083 45.833 0.00 0.00 32.52 3.86
1981 2431 5.053140 TCGTTCTGACAAATCTCTCTCAG 57.947 43.478 0.00 0.00 32.86 3.35
1982 2432 5.405797 CATCGTTCTGACAAATCTCTCTCA 58.594 41.667 0.00 0.00 0.00 3.27
1983 2433 4.803088 CCATCGTTCTGACAAATCTCTCTC 59.197 45.833 0.00 0.00 0.00 3.20
1984 2434 4.221703 ACCATCGTTCTGACAAATCTCTCT 59.778 41.667 0.00 0.00 0.00 3.10
1985 2435 4.499183 ACCATCGTTCTGACAAATCTCTC 58.501 43.478 0.00 0.00 0.00 3.20
2004 2454 2.875672 GCAATGTAGACCAGCTGAACCA 60.876 50.000 17.39 4.64 0.00 3.67
2005 2455 1.740025 GCAATGTAGACCAGCTGAACC 59.260 52.381 17.39 3.43 0.00 3.62
2006 2456 2.160417 GTGCAATGTAGACCAGCTGAAC 59.840 50.000 17.39 8.68 0.00 3.18
2027 2477 8.915057 AGGAAACATGATCTACATCCTATTTG 57.085 34.615 0.00 0.00 37.07 2.32
2028 2478 7.875041 CGAGGAAACATGATCTACATCCTATTT 59.125 37.037 0.00 0.00 35.28 1.40
2030 2480 6.495181 ACGAGGAAACATGATCTACATCCTAT 59.505 38.462 0.00 0.00 35.28 2.57
2031 2481 5.833667 ACGAGGAAACATGATCTACATCCTA 59.166 40.000 0.00 0.00 35.28 2.94
2032 2482 4.651503 ACGAGGAAACATGATCTACATCCT 59.348 41.667 0.00 0.00 37.10 3.24
2033 2483 4.950050 ACGAGGAAACATGATCTACATCC 58.050 43.478 0.00 0.00 37.07 3.51
2034 2484 7.653713 ACAATACGAGGAAACATGATCTACATC 59.346 37.037 0.00 0.00 37.07 3.06
2043 2504 7.277760 TGAGTTGATACAATACGAGGAAACATG 59.722 37.037 0.00 0.00 0.00 3.21
2053 2514 7.484007 ACGTAGACTTTGAGTTGATACAATACG 59.516 37.037 0.00 0.00 37.32 3.06
2056 2517 7.360101 GCAACGTAGACTTTGAGTTGATACAAT 60.360 37.037 10.32 0.00 43.24 2.71
2063 2524 3.308595 TGTGCAACGTAGACTTTGAGTTG 59.691 43.478 3.29 2.66 42.39 3.16
2078 2540 4.274459 AGTGAACTTCAGATTCTGTGCAAC 59.726 41.667 13.23 6.30 32.61 4.17
2112 2574 5.374071 TCTGGGAGTAAAAACAGAAAGGAC 58.626 41.667 0.00 0.00 37.06 3.85
2115 2577 6.990349 TGTACTCTGGGAGTAAAAACAGAAAG 59.010 38.462 8.69 0.00 45.12 2.62
2124 2595 7.284074 TGAAACATTTGTACTCTGGGAGTAAA 58.716 34.615 8.69 1.72 45.12 2.01
2257 2731 4.286910 CAACATAACACGGAAACCAACAG 58.713 43.478 0.00 0.00 0.00 3.16
2263 2737 4.776795 AATCCCAACATAACACGGAAAC 57.223 40.909 0.00 0.00 0.00 2.78
2266 2740 4.884744 CCATTAATCCCAACATAACACGGA 59.115 41.667 0.00 0.00 0.00 4.69
2288 2762 3.006967 AGGCAACCGTAGATCATCATACC 59.993 47.826 0.00 0.00 37.17 2.73
2340 2814 8.235359 ACCAGGCTATATATCTACCGTTTATC 57.765 38.462 0.00 0.00 0.00 1.75
2347 2821 7.178628 TCAGTTGAACCAGGCTATATATCTACC 59.821 40.741 0.00 0.00 0.00 3.18
2359 2833 0.610232 ATGGCTCAGTTGAACCAGGC 60.610 55.000 9.82 10.44 42.83 4.85
2360 2834 1.171308 CATGGCTCAGTTGAACCAGG 58.829 55.000 9.82 6.18 42.83 4.45
2361 2835 1.171308 CCATGGCTCAGTTGAACCAG 58.829 55.000 9.82 3.29 42.83 4.00
2362 2836 0.478072 ACCATGGCTCAGTTGAACCA 59.522 50.000 13.04 6.71 43.61 3.67
2363 2837 1.541588 GAACCATGGCTCAGTTGAACC 59.458 52.381 13.04 0.00 0.00 3.62
2364 2838 2.229792 TGAACCATGGCTCAGTTGAAC 58.770 47.619 13.96 0.00 0.00 3.18
2365 2839 2.622942 GTTGAACCATGGCTCAGTTGAA 59.377 45.455 17.04 0.27 0.00 2.69
2366 2840 2.229792 GTTGAACCATGGCTCAGTTGA 58.770 47.619 17.04 0.65 0.00 3.18
2367 2841 1.270550 GGTTGAACCATGGCTCAGTTG 59.729 52.381 17.04 0.00 38.42 3.16
2368 2842 1.133513 TGGTTGAACCATGGCTCAGTT 60.134 47.619 14.05 0.84 44.79 3.16
2369 2843 0.478072 TGGTTGAACCATGGCTCAGT 59.522 50.000 14.05 0.00 44.79 3.41
2370 2844 3.344703 TGGTTGAACCATGGCTCAG 57.655 52.632 14.05 0.00 44.79 3.35
2379 2853 4.142469 GGTGCATGTATAGTTGGTTGAACC 60.142 45.833 7.57 7.57 39.22 3.62
2380 2854 4.700213 AGGTGCATGTATAGTTGGTTGAAC 59.300 41.667 0.00 0.00 34.40 3.18
2381 2855 4.699735 CAGGTGCATGTATAGTTGGTTGAA 59.300 41.667 0.00 0.00 0.00 2.69
2382 2856 4.019771 TCAGGTGCATGTATAGTTGGTTGA 60.020 41.667 0.00 0.00 0.00 3.18
2383 2857 4.260985 TCAGGTGCATGTATAGTTGGTTG 58.739 43.478 0.00 0.00 0.00 3.77
2384 2858 4.568072 TCAGGTGCATGTATAGTTGGTT 57.432 40.909 0.00 0.00 0.00 3.67
2385 2859 4.778213 ATCAGGTGCATGTATAGTTGGT 57.222 40.909 0.00 0.00 0.00 3.67
2386 2860 5.371526 AGAATCAGGTGCATGTATAGTTGG 58.628 41.667 0.00 0.00 0.00 3.77
2387 2861 7.658982 ACATAGAATCAGGTGCATGTATAGTTG 59.341 37.037 0.00 0.00 0.00 3.16
2388 2862 7.739825 ACATAGAATCAGGTGCATGTATAGTT 58.260 34.615 0.00 0.00 0.00 2.24
2389 2863 7.308450 ACATAGAATCAGGTGCATGTATAGT 57.692 36.000 0.00 0.00 0.00 2.12
2390 2864 6.529477 CGACATAGAATCAGGTGCATGTATAG 59.471 42.308 0.00 0.00 0.00 1.31
2391 2865 6.389906 CGACATAGAATCAGGTGCATGTATA 58.610 40.000 0.00 0.00 0.00 1.47
2392 2866 5.233225 CGACATAGAATCAGGTGCATGTAT 58.767 41.667 0.00 0.00 0.00 2.29
2393 2867 4.501400 CCGACATAGAATCAGGTGCATGTA 60.501 45.833 0.00 0.00 0.00 2.29
2394 2868 3.461061 CGACATAGAATCAGGTGCATGT 58.539 45.455 0.00 0.00 0.00 3.21
2395 2869 2.804527 CCGACATAGAATCAGGTGCATG 59.195 50.000 0.00 0.00 0.00 4.06
2396 2870 2.808202 GCCGACATAGAATCAGGTGCAT 60.808 50.000 0.00 0.00 0.00 3.96
2397 2871 1.473257 GCCGACATAGAATCAGGTGCA 60.473 52.381 0.00 0.00 0.00 4.57
2398 2872 1.221414 GCCGACATAGAATCAGGTGC 58.779 55.000 0.00 0.00 0.00 5.01
2399 2873 2.602257 TGCCGACATAGAATCAGGTG 57.398 50.000 0.00 0.00 0.00 4.00
2400 2874 2.700371 TCATGCCGACATAGAATCAGGT 59.300 45.455 0.00 0.00 33.67 4.00
2401 2875 3.391506 TCATGCCGACATAGAATCAGG 57.608 47.619 0.00 0.00 33.67 3.86
2402 2876 3.183172 CGTTCATGCCGACATAGAATCAG 59.817 47.826 0.00 0.00 33.67 2.90
2403 2877 3.123050 CGTTCATGCCGACATAGAATCA 58.877 45.455 0.00 0.00 33.67 2.57
2404 2878 3.381045 TCGTTCATGCCGACATAGAATC 58.619 45.455 3.57 0.00 33.67 2.52
2405 2879 3.452755 TCGTTCATGCCGACATAGAAT 57.547 42.857 3.57 0.00 33.67 2.40
2406 2880 2.951457 TCGTTCATGCCGACATAGAA 57.049 45.000 3.57 0.00 33.67 2.10
2407 2881 2.165641 ACTTCGTTCATGCCGACATAGA 59.834 45.455 6.78 0.00 33.67 1.98
2408 2882 2.540515 ACTTCGTTCATGCCGACATAG 58.459 47.619 6.78 5.40 33.67 2.23
2409 2883 2.665649 ACTTCGTTCATGCCGACATA 57.334 45.000 6.78 0.00 33.67 2.29
2410 2884 2.665649 TACTTCGTTCATGCCGACAT 57.334 45.000 6.78 2.18 36.79 3.06
2411 2885 2.442212 TTACTTCGTTCATGCCGACA 57.558 45.000 6.78 0.00 33.41 4.35
2412 2886 4.550255 GCTATTTACTTCGTTCATGCCGAC 60.550 45.833 6.78 0.00 33.41 4.79
2413 2887 3.554324 GCTATTTACTTCGTTCATGCCGA 59.446 43.478 3.57 3.57 0.00 5.54
2414 2888 3.308595 TGCTATTTACTTCGTTCATGCCG 59.691 43.478 0.00 0.00 0.00 5.69
2415 2889 4.875544 TGCTATTTACTTCGTTCATGCC 57.124 40.909 0.00 0.00 0.00 4.40
2416 2890 8.734030 GTTTTATGCTATTTACTTCGTTCATGC 58.266 33.333 0.00 0.00 0.00 4.06
2417 2891 9.988350 AGTTTTATGCTATTTACTTCGTTCATG 57.012 29.630 0.00 0.00 0.00 3.07
2510 2989 0.031616 TTTGAAACAGCCCACCCCTT 60.032 50.000 0.00 0.00 0.00 3.95
2951 3441 3.164269 CCGAGCCCCTAGCCATGT 61.164 66.667 0.00 0.00 45.47 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.