Multiple sequence alignment - TraesCS1B01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G254900 chr1B 100.000 5183 0 0 1 5183 449396163 449390981 0.000000e+00 9572.0
1 TraesCS1B01G254900 chr1D 95.842 3680 119 18 577 4244 333504241 333500584 0.000000e+00 5917.0
2 TraesCS1B01G254900 chr1D 93.056 792 28 9 4403 5183 333500516 333499741 0.000000e+00 1133.0
3 TraesCS1B01G254900 chr1D 88.710 62 5 2 4329 4388 35756856 35756917 2.000000e-09 75.0
4 TraesCS1B01G254900 chr1A 95.380 3550 137 17 707 4245 431784461 431780928 0.000000e+00 5622.0
5 TraesCS1B01G254900 chr1A 97.302 630 11 2 4560 5183 431780666 431780037 0.000000e+00 1064.0
6 TraesCS1B01G254900 chr3D 90.909 110 9 1 5075 5183 191315594 191315703 4.180000e-31 147.0
7 TraesCS1B01G254900 chr3D 88.333 60 5 2 4332 4391 459472530 459472473 2.590000e-08 71.3
8 TraesCS1B01G254900 chr2D 91.935 62 4 1 4340 4401 106264517 106264577 9.250000e-13 86.1
9 TraesCS1B01G254900 chrUn 89.552 67 4 2 4339 4402 49143755 49143821 1.200000e-11 82.4
10 TraesCS1B01G254900 chr2A 88.710 62 6 1 4340 4401 102678095 102678155 2.000000e-09 75.0
11 TraesCS1B01G254900 chr6D 87.500 64 6 2 4339 4402 439768331 439768392 7.200000e-09 73.1
12 TraesCS1B01G254900 chr7B 87.302 63 6 2 4340 4402 11922407 11922467 2.590000e-08 71.3
13 TraesCS1B01G254900 chr7B 86.154 65 8 1 4338 4401 196390825 196390889 9.310000e-08 69.4
14 TraesCS1B01G254900 chr4D 83.562 73 7 5 4334 4405 499313220 499313152 4.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G254900 chr1B 449390981 449396163 5182 True 9572 9572 100.000 1 5183 1 chr1B.!!$R1 5182
1 TraesCS1B01G254900 chr1D 333499741 333504241 4500 True 3525 5917 94.449 577 5183 2 chr1D.!!$R1 4606
2 TraesCS1B01G254900 chr1A 431780037 431784461 4424 True 3343 5622 96.341 707 5183 2 chr1A.!!$R1 4476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.034756 TGCAACTCTCGCCAAAGCTA 59.965 50.0 0.0 0.0 36.60 3.32 F
290 291 0.107456 CTGGATATGCGGCTGGACTT 59.893 55.0 0.0 0.0 0.00 3.01 F
318 319 0.108207 ATCACCTGCTGATGCCTAGC 59.892 55.0 0.0 0.0 38.28 3.42 F
721 737 0.373716 CCGACGGCAGCAATAGAAAC 59.626 55.0 0.0 0.0 0.00 2.78 F
2352 2380 0.108138 GCAAGACCACGCAGATACCT 60.108 55.0 0.0 0.0 0.00 3.08 F
2934 2962 0.035725 TCGAGACGGTGGAAGAGCTA 60.036 55.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1897 0.250038 TATAGTAGTCGCCGGCGTCT 60.250 55.000 41.31 41.31 40.45 4.18 R
2113 2141 0.314302 AAGTCGACCACGTCTTCCAG 59.686 55.000 13.01 0.00 42.04 3.86 R
2274 2302 0.677731 TTTCGATGGCCTTGAGCAGG 60.678 55.000 3.32 0.00 46.50 4.85 R
2526 2554 3.427638 CGTCCGTCATGTACTTGATCACT 60.428 47.826 13.92 0.00 0.00 3.41 R
3382 3410 0.250513 GGGTCCATGAAGTCGAAGCT 59.749 55.000 0.00 0.00 0.00 3.74 R
4377 4432 0.175760 CCCTCCGTCACATACACTGG 59.824 60.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.673298 CCGCCACGTGGTGCTACA 62.673 66.667 37.14 0.00 44.11 2.74
24 25 3.112075 CGCCACGTGGTGCTACAG 61.112 66.667 33.26 13.35 39.04 2.74
25 26 2.742372 GCCACGTGGTGCTACAGG 60.742 66.667 33.92 7.46 37.57 4.00
26 27 3.056458 CCACGTGGTGCTACAGGA 58.944 61.111 26.95 0.00 31.34 3.86
27 28 1.079819 CCACGTGGTGCTACAGGAG 60.080 63.158 26.95 0.00 31.34 3.69
36 37 4.554363 CTACAGGAGCGTCGGCGG 62.554 72.222 13.05 0.00 46.35 6.13
46 47 4.465512 GTCGGCGGTGCTGCATTG 62.466 66.667 5.27 2.34 34.49 2.82
49 50 3.818787 GGCGGTGCTGCATTGGAG 61.819 66.667 5.27 0.03 36.28 3.86
50 51 3.058160 GCGGTGCTGCATTGGAGT 61.058 61.111 5.27 0.00 34.15 3.85
51 52 1.745115 GCGGTGCTGCATTGGAGTA 60.745 57.895 5.27 0.00 34.15 2.59
52 53 1.097547 GCGGTGCTGCATTGGAGTAT 61.098 55.000 5.27 0.00 34.15 2.12
53 54 0.940126 CGGTGCTGCATTGGAGTATC 59.060 55.000 5.27 1.67 0.00 2.24
54 55 1.743431 CGGTGCTGCATTGGAGTATCA 60.743 52.381 5.27 0.00 36.25 2.15
55 56 1.672881 GGTGCTGCATTGGAGTATCAC 59.327 52.381 5.27 6.48 36.25 3.06
56 57 1.672881 GTGCTGCATTGGAGTATCACC 59.327 52.381 5.27 0.00 36.25 4.02
57 58 1.281577 TGCTGCATTGGAGTATCACCA 59.718 47.619 7.05 0.00 36.25 4.17
63 64 2.489938 TTGGAGTATCACCAAGCCAC 57.510 50.000 0.00 0.00 41.64 5.01
64 65 1.656587 TGGAGTATCACCAAGCCACT 58.343 50.000 0.00 0.00 36.25 4.00
65 66 2.827755 TGGAGTATCACCAAGCCACTA 58.172 47.619 0.00 0.00 36.25 2.74
66 67 2.766263 TGGAGTATCACCAAGCCACTAG 59.234 50.000 0.00 0.00 36.25 2.57
67 68 3.031736 GGAGTATCACCAAGCCACTAGA 58.968 50.000 0.00 0.00 36.25 2.43
68 69 3.068873 GGAGTATCACCAAGCCACTAGAG 59.931 52.174 0.00 0.00 36.25 2.43
69 70 2.432510 AGTATCACCAAGCCACTAGAGC 59.567 50.000 0.00 0.00 0.00 4.09
70 71 1.279496 ATCACCAAGCCACTAGAGCA 58.721 50.000 11.21 0.00 0.00 4.26
71 72 1.279496 TCACCAAGCCACTAGAGCAT 58.721 50.000 11.21 0.00 0.00 3.79
72 73 1.208052 TCACCAAGCCACTAGAGCATC 59.792 52.381 11.21 0.00 0.00 3.91
73 74 0.176680 ACCAAGCCACTAGAGCATCG 59.823 55.000 11.21 0.00 42.67 3.84
74 75 0.176680 CCAAGCCACTAGAGCATCGT 59.823 55.000 11.21 0.00 42.67 3.73
75 76 1.284657 CAAGCCACTAGAGCATCGTG 58.715 55.000 11.21 0.00 42.67 4.35
76 77 1.134995 CAAGCCACTAGAGCATCGTGA 60.135 52.381 11.21 0.00 42.67 4.35
77 78 1.407936 AGCCACTAGAGCATCGTGAT 58.592 50.000 11.21 0.00 42.67 3.06
78 79 1.068281 AGCCACTAGAGCATCGTGATG 59.932 52.381 5.48 5.48 42.67 3.07
90 91 1.939974 TCGTGATGCTACAATGGAGC 58.060 50.000 11.21 11.21 40.53 4.70
95 96 3.248043 TGCTACAATGGAGCACACC 57.752 52.632 17.45 0.00 44.89 4.16
96 97 0.399833 TGCTACAATGGAGCACACCA 59.600 50.000 17.45 0.00 44.89 4.17
102 103 3.391736 ATGGAGCACACCATCGATG 57.608 52.632 18.76 18.76 46.24 3.84
103 104 0.816825 ATGGAGCACACCATCGATGC 60.817 55.000 20.25 9.97 46.24 3.91
104 105 1.450134 GGAGCACACCATCGATGCA 60.450 57.895 20.25 0.00 41.97 3.96
105 106 1.026182 GGAGCACACCATCGATGCAA 61.026 55.000 20.25 0.00 41.97 4.08
106 107 0.097674 GAGCACACCATCGATGCAAC 59.902 55.000 20.25 6.92 41.97 4.17
107 108 0.321919 AGCACACCATCGATGCAACT 60.322 50.000 20.25 9.03 41.97 3.16
108 109 0.097674 GCACACCATCGATGCAACTC 59.902 55.000 20.25 4.82 39.23 3.01
109 110 1.730501 CACACCATCGATGCAACTCT 58.269 50.000 20.25 0.00 0.00 3.24
110 111 1.662629 CACACCATCGATGCAACTCTC 59.337 52.381 20.25 0.00 0.00 3.20
111 112 0.926155 CACCATCGATGCAACTCTCG 59.074 55.000 20.25 6.20 36.25 4.04
112 113 0.807667 ACCATCGATGCAACTCTCGC 60.808 55.000 20.25 0.00 34.94 5.03
113 114 1.493950 CCATCGATGCAACTCTCGCC 61.494 60.000 20.25 0.00 34.94 5.54
114 115 0.807275 CATCGATGCAACTCTCGCCA 60.807 55.000 13.37 0.00 34.94 5.69
115 116 0.108186 ATCGATGCAACTCTCGCCAA 60.108 50.000 0.00 0.00 34.94 4.52
116 117 0.320334 TCGATGCAACTCTCGCCAAA 60.320 50.000 2.57 0.00 34.94 3.28
117 118 0.095935 CGATGCAACTCTCGCCAAAG 59.904 55.000 0.00 0.00 0.00 2.77
118 119 0.179179 GATGCAACTCTCGCCAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
119 120 0.607489 ATGCAACTCTCGCCAAAGCT 60.607 50.000 0.00 0.00 36.60 3.74
120 121 0.034756 TGCAACTCTCGCCAAAGCTA 59.965 50.000 0.00 0.00 36.60 3.32
121 122 1.339055 TGCAACTCTCGCCAAAGCTAT 60.339 47.619 0.00 0.00 36.60 2.97
122 123 1.063174 GCAACTCTCGCCAAAGCTATG 59.937 52.381 0.00 0.00 36.60 2.23
123 124 2.350522 CAACTCTCGCCAAAGCTATGT 58.649 47.619 0.00 0.00 36.60 2.29
124 125 2.015736 ACTCTCGCCAAAGCTATGTG 57.984 50.000 0.00 0.00 36.60 3.21
125 126 0.654683 CTCTCGCCAAAGCTATGTGC 59.345 55.000 0.00 0.00 43.29 4.57
130 131 1.586154 GCCAAAGCTATGTGCGTGGT 61.586 55.000 14.65 0.00 46.62 4.16
131 132 3.714942 GCCAAAGCTATGTGCGTGGTG 62.715 57.143 14.65 0.00 46.62 4.17
134 135 4.277239 GCTATGTGCGTGGTGTGA 57.723 55.556 0.00 0.00 0.00 3.58
135 136 2.767536 GCTATGTGCGTGGTGTGAT 58.232 52.632 0.00 0.00 0.00 3.06
136 137 0.374758 GCTATGTGCGTGGTGTGATG 59.625 55.000 0.00 0.00 0.00 3.07
137 138 2.006552 GCTATGTGCGTGGTGTGATGA 61.007 52.381 0.00 0.00 0.00 2.92
138 139 1.929169 CTATGTGCGTGGTGTGATGAG 59.071 52.381 0.00 0.00 0.00 2.90
139 140 1.300971 ATGTGCGTGGTGTGATGAGC 61.301 55.000 0.00 0.00 0.00 4.26
140 141 2.738139 TGCGTGGTGTGATGAGCG 60.738 61.111 0.00 0.00 0.00 5.03
141 142 3.490759 GCGTGGTGTGATGAGCGG 61.491 66.667 0.00 0.00 0.00 5.52
142 143 2.815211 CGTGGTGTGATGAGCGGG 60.815 66.667 0.00 0.00 0.00 6.13
143 144 2.436646 GTGGTGTGATGAGCGGGG 60.437 66.667 0.00 0.00 0.00 5.73
144 145 2.606213 TGGTGTGATGAGCGGGGA 60.606 61.111 0.00 0.00 0.00 4.81
145 146 1.995066 TGGTGTGATGAGCGGGGAT 60.995 57.895 0.00 0.00 0.00 3.85
146 147 1.524621 GGTGTGATGAGCGGGGATG 60.525 63.158 0.00 0.00 0.00 3.51
147 148 2.182842 GTGTGATGAGCGGGGATGC 61.183 63.158 0.00 0.00 0.00 3.91
157 158 4.115199 GGGGATGCTGGAGGCGTT 62.115 66.667 0.00 0.00 45.43 4.84
158 159 2.044946 GGGATGCTGGAGGCGTTT 60.045 61.111 0.00 0.00 45.43 3.60
159 160 2.115291 GGGATGCTGGAGGCGTTTC 61.115 63.158 0.00 0.00 45.43 2.78
160 161 1.377202 GGATGCTGGAGGCGTTTCA 60.377 57.895 0.00 0.00 45.43 2.69
161 162 1.372087 GGATGCTGGAGGCGTTTCAG 61.372 60.000 6.41 6.41 45.43 3.02
162 163 1.372087 GATGCTGGAGGCGTTTCAGG 61.372 60.000 11.02 0.00 45.43 3.86
163 164 2.747855 GCTGGAGGCGTTTCAGGG 60.748 66.667 11.02 0.00 0.00 4.45
164 165 2.045926 CTGGAGGCGTTTCAGGGG 60.046 66.667 3.68 0.00 0.00 4.79
165 166 3.628646 CTGGAGGCGTTTCAGGGGG 62.629 68.421 3.68 0.00 0.00 5.40
191 192 3.961414 GGCGTGTTGGGGAGGGAA 61.961 66.667 0.00 0.00 0.00 3.97
192 193 2.355115 GCGTGTTGGGGAGGGAAT 59.645 61.111 0.00 0.00 0.00 3.01
193 194 1.749258 GCGTGTTGGGGAGGGAATC 60.749 63.158 0.00 0.00 0.00 2.52
194 195 1.449601 CGTGTTGGGGAGGGAATCG 60.450 63.158 0.00 0.00 0.00 3.34
195 196 1.895020 CGTGTTGGGGAGGGAATCGA 61.895 60.000 0.00 0.00 0.00 3.59
196 197 0.546598 GTGTTGGGGAGGGAATCGAT 59.453 55.000 0.00 0.00 0.00 3.59
197 198 0.546122 TGTTGGGGAGGGAATCGATG 59.454 55.000 0.00 0.00 0.00 3.84
198 199 0.179018 GTTGGGGAGGGAATCGATGG 60.179 60.000 0.00 0.00 0.00 3.51
199 200 1.994885 TTGGGGAGGGAATCGATGGC 61.995 60.000 0.00 0.00 0.00 4.40
200 201 2.452064 GGGGAGGGAATCGATGGCA 61.452 63.158 0.00 0.00 0.00 4.92
201 202 1.763770 GGGAGGGAATCGATGGCAT 59.236 57.895 0.00 0.00 0.00 4.40
202 203 0.607489 GGGAGGGAATCGATGGCATG 60.607 60.000 3.81 0.00 0.00 4.06
203 204 0.607489 GGAGGGAATCGATGGCATGG 60.607 60.000 3.81 3.19 0.00 3.66
204 205 0.109342 GAGGGAATCGATGGCATGGT 59.891 55.000 3.81 0.00 0.00 3.55
205 206 0.109342 AGGGAATCGATGGCATGGTC 59.891 55.000 3.81 0.00 0.00 4.02
206 207 0.109342 GGGAATCGATGGCATGGTCT 59.891 55.000 3.81 0.00 0.00 3.85
207 208 1.517242 GGAATCGATGGCATGGTCTC 58.483 55.000 3.81 4.94 0.00 3.36
208 209 1.202687 GGAATCGATGGCATGGTCTCA 60.203 52.381 3.81 0.00 0.00 3.27
209 210 2.141517 GAATCGATGGCATGGTCTCAG 58.858 52.381 3.81 0.00 0.00 3.35
210 211 0.250209 ATCGATGGCATGGTCTCAGC 60.250 55.000 3.81 0.00 0.00 4.26
211 212 2.242572 CGATGGCATGGTCTCAGCG 61.243 63.158 3.81 0.00 34.16 5.18
212 213 1.153289 GATGGCATGGTCTCAGCGT 60.153 57.895 3.81 0.00 0.00 5.07
213 214 1.434622 GATGGCATGGTCTCAGCGTG 61.435 60.000 3.81 0.00 35.82 5.34
214 215 2.821366 GGCATGGTCTCAGCGTGG 60.821 66.667 0.00 0.00 33.49 4.94
215 216 3.503363 GCATGGTCTCAGCGTGGC 61.503 66.667 0.00 0.00 33.49 5.01
216 217 2.821366 CATGGTCTCAGCGTGGCC 60.821 66.667 0.00 0.00 0.00 5.36
217 218 4.101448 ATGGTCTCAGCGTGGCCC 62.101 66.667 0.00 0.00 0.00 5.80
219 220 4.767255 GGTCTCAGCGTGGCCCTG 62.767 72.222 0.00 0.00 0.00 4.45
220 221 4.008933 GTCTCAGCGTGGCCCTGT 62.009 66.667 0.00 0.00 0.00 4.00
221 222 3.695606 TCTCAGCGTGGCCCTGTC 61.696 66.667 0.00 0.00 0.00 3.51
222 223 4.007644 CTCAGCGTGGCCCTGTCA 62.008 66.667 0.00 0.00 0.00 3.58
223 224 3.320879 CTCAGCGTGGCCCTGTCAT 62.321 63.158 0.00 0.00 0.00 3.06
224 225 2.821366 CAGCGTGGCCCTGTCATC 60.821 66.667 0.00 0.00 0.00 2.92
225 226 3.321648 AGCGTGGCCCTGTCATCA 61.322 61.111 0.00 0.00 0.00 3.07
226 227 2.821366 GCGTGGCCCTGTCATCAG 60.821 66.667 0.00 0.00 41.01 2.90
238 239 3.911868 CTGTCATCAGGTATCTAGCAGC 58.088 50.000 0.00 0.00 37.97 5.25
239 240 2.630098 TGTCATCAGGTATCTAGCAGCC 59.370 50.000 0.00 0.00 0.00 4.85
240 241 2.028567 GTCATCAGGTATCTAGCAGCCC 60.029 54.545 0.00 0.00 0.00 5.19
241 242 1.973515 CATCAGGTATCTAGCAGCCCA 59.026 52.381 0.00 0.00 0.00 5.36
242 243 2.174685 TCAGGTATCTAGCAGCCCAA 57.825 50.000 0.00 0.00 0.00 4.12
243 244 2.477245 TCAGGTATCTAGCAGCCCAAA 58.523 47.619 0.00 0.00 0.00 3.28
244 245 3.048600 TCAGGTATCTAGCAGCCCAAAT 58.951 45.455 0.00 0.00 0.00 2.32
245 246 3.459598 TCAGGTATCTAGCAGCCCAAATT 59.540 43.478 0.00 0.00 0.00 1.82
246 247 4.658435 TCAGGTATCTAGCAGCCCAAATTA 59.342 41.667 0.00 0.00 0.00 1.40
247 248 4.999950 CAGGTATCTAGCAGCCCAAATTAG 59.000 45.833 0.00 0.00 0.00 1.73
248 249 4.907875 AGGTATCTAGCAGCCCAAATTAGA 59.092 41.667 0.00 0.00 0.00 2.10
249 250 5.549619 AGGTATCTAGCAGCCCAAATTAGAT 59.450 40.000 5.27 5.27 35.75 1.98
250 251 6.044871 AGGTATCTAGCAGCCCAAATTAGATT 59.955 38.462 5.24 0.00 34.10 2.40
251 252 7.237679 AGGTATCTAGCAGCCCAAATTAGATTA 59.762 37.037 5.24 0.00 34.10 1.75
252 253 8.049721 GGTATCTAGCAGCCCAAATTAGATTAT 58.950 37.037 5.24 0.00 34.10 1.28
253 254 7.934855 ATCTAGCAGCCCAAATTAGATTATG 57.065 36.000 0.00 0.00 29.23 1.90
254 255 4.861102 AGCAGCCCAAATTAGATTATGC 57.139 40.909 0.00 0.00 0.00 3.14
255 256 3.254166 AGCAGCCCAAATTAGATTATGCG 59.746 43.478 0.00 0.00 36.31 4.73
256 257 3.004734 GCAGCCCAAATTAGATTATGCGT 59.995 43.478 0.00 0.00 0.00 5.24
257 258 4.539870 CAGCCCAAATTAGATTATGCGTG 58.460 43.478 0.00 0.00 0.00 5.34
258 259 4.275689 CAGCCCAAATTAGATTATGCGTGA 59.724 41.667 0.00 0.00 0.00 4.35
259 260 4.516698 AGCCCAAATTAGATTATGCGTGAG 59.483 41.667 0.00 0.00 0.00 3.51
274 275 2.653890 CGTGAGCAAATCAACAACTGG 58.346 47.619 0.00 0.00 40.43 4.00
275 276 2.290367 CGTGAGCAAATCAACAACTGGA 59.710 45.455 0.00 0.00 40.43 3.86
276 277 3.058016 CGTGAGCAAATCAACAACTGGAT 60.058 43.478 0.00 0.00 40.43 3.41
277 278 4.154015 CGTGAGCAAATCAACAACTGGATA 59.846 41.667 0.00 0.00 40.43 2.59
278 279 5.163723 CGTGAGCAAATCAACAACTGGATAT 60.164 40.000 0.00 0.00 40.43 1.63
279 280 6.032094 GTGAGCAAATCAACAACTGGATATG 58.968 40.000 0.00 0.00 40.43 1.78
280 281 5.002464 AGCAAATCAACAACTGGATATGC 57.998 39.130 0.00 0.00 0.00 3.14
281 282 3.792956 GCAAATCAACAACTGGATATGCG 59.207 43.478 0.00 0.00 0.00 4.73
282 283 4.353737 CAAATCAACAACTGGATATGCGG 58.646 43.478 0.78 0.78 0.00 5.69
283 284 1.378531 TCAACAACTGGATATGCGGC 58.621 50.000 2.45 0.00 0.00 6.53
284 285 1.065491 TCAACAACTGGATATGCGGCT 60.065 47.619 2.45 0.00 0.00 5.52
285 286 1.064505 CAACAACTGGATATGCGGCTG 59.935 52.381 2.45 3.86 0.00 4.85
286 287 0.464373 ACAACTGGATATGCGGCTGG 60.464 55.000 10.71 0.47 0.00 4.85
287 288 0.179048 CAACTGGATATGCGGCTGGA 60.179 55.000 2.45 0.00 0.00 3.86
288 289 0.179045 AACTGGATATGCGGCTGGAC 60.179 55.000 2.45 0.00 0.00 4.02
289 290 1.050988 ACTGGATATGCGGCTGGACT 61.051 55.000 2.45 0.00 0.00 3.85
290 291 0.107456 CTGGATATGCGGCTGGACTT 59.893 55.000 0.00 0.00 0.00 3.01
291 292 0.546122 TGGATATGCGGCTGGACTTT 59.454 50.000 0.00 0.00 0.00 2.66
292 293 1.064758 TGGATATGCGGCTGGACTTTT 60.065 47.619 0.00 0.00 0.00 2.27
293 294 1.604278 GGATATGCGGCTGGACTTTTC 59.396 52.381 0.00 0.00 0.00 2.29
294 295 2.288666 GATATGCGGCTGGACTTTTCA 58.711 47.619 0.00 0.00 0.00 2.69
295 296 2.418368 TATGCGGCTGGACTTTTCAT 57.582 45.000 0.00 0.00 0.00 2.57
296 297 0.813184 ATGCGGCTGGACTTTTCATG 59.187 50.000 0.00 0.00 0.00 3.07
297 298 0.250684 TGCGGCTGGACTTTTCATGA 60.251 50.000 0.00 0.00 0.00 3.07
298 299 0.449388 GCGGCTGGACTTTTCATGAG 59.551 55.000 0.00 0.00 0.00 2.90
299 300 1.945819 GCGGCTGGACTTTTCATGAGA 60.946 52.381 0.00 0.00 0.00 3.27
300 301 2.636830 CGGCTGGACTTTTCATGAGAT 58.363 47.619 0.00 0.00 0.00 2.75
301 302 2.611292 CGGCTGGACTTTTCATGAGATC 59.389 50.000 0.00 0.00 0.00 2.75
302 303 3.614092 GGCTGGACTTTTCATGAGATCA 58.386 45.455 0.00 0.00 0.00 2.92
303 304 3.376546 GGCTGGACTTTTCATGAGATCAC 59.623 47.826 0.00 0.00 0.00 3.06
304 305 3.376546 GCTGGACTTTTCATGAGATCACC 59.623 47.826 0.00 0.00 0.00 4.02
305 306 4.841422 CTGGACTTTTCATGAGATCACCT 58.159 43.478 0.00 0.00 0.00 4.00
306 307 4.582869 TGGACTTTTCATGAGATCACCTG 58.417 43.478 0.00 0.00 0.00 4.00
307 308 3.376546 GGACTTTTCATGAGATCACCTGC 59.623 47.826 0.00 0.00 0.00 4.85
308 309 4.260170 GACTTTTCATGAGATCACCTGCT 58.740 43.478 0.00 0.00 0.00 4.24
309 310 4.008330 ACTTTTCATGAGATCACCTGCTG 58.992 43.478 0.00 0.00 0.00 4.41
310 311 3.986996 TTTCATGAGATCACCTGCTGA 57.013 42.857 0.00 0.00 0.00 4.26
311 312 4.498894 TTTCATGAGATCACCTGCTGAT 57.501 40.909 0.00 0.00 42.84 2.90
312 313 3.470645 TCATGAGATCACCTGCTGATG 57.529 47.619 0.00 0.00 39.96 3.07
313 314 1.874231 CATGAGATCACCTGCTGATGC 59.126 52.381 0.00 0.00 39.96 3.91
314 315 0.179702 TGAGATCACCTGCTGATGCC 59.820 55.000 0.00 0.00 39.96 4.40
315 316 0.469070 GAGATCACCTGCTGATGCCT 59.531 55.000 0.00 0.00 39.96 4.75
316 317 1.690893 GAGATCACCTGCTGATGCCTA 59.309 52.381 0.00 0.00 39.96 3.93
317 318 1.693062 AGATCACCTGCTGATGCCTAG 59.307 52.381 0.00 0.00 39.96 3.02
318 319 0.108207 ATCACCTGCTGATGCCTAGC 59.892 55.000 0.00 0.00 38.28 3.42
324 325 2.971413 CTGATGCCTAGCAGCCGC 60.971 66.667 1.98 0.00 44.94 6.53
325 326 4.552365 TGATGCCTAGCAGCCGCC 62.552 66.667 1.98 0.00 44.94 6.13
326 327 4.247380 GATGCCTAGCAGCCGCCT 62.247 66.667 0.00 0.00 43.65 5.52
327 328 3.764160 GATGCCTAGCAGCCGCCTT 62.764 63.158 0.00 0.00 43.65 4.35
328 329 2.383245 GATGCCTAGCAGCCGCCTTA 62.383 60.000 0.00 0.00 43.65 2.69
329 330 1.983119 ATGCCTAGCAGCCGCCTTAA 61.983 55.000 0.00 0.00 43.65 1.85
330 331 1.889573 GCCTAGCAGCCGCCTTAAG 60.890 63.158 0.00 0.00 39.83 1.85
331 332 1.227674 CCTAGCAGCCGCCTTAAGG 60.228 63.158 17.81 17.81 39.83 2.69
332 333 1.522569 CTAGCAGCCGCCTTAAGGT 59.477 57.895 22.55 3.62 39.83 3.50
333 334 0.750850 CTAGCAGCCGCCTTAAGGTA 59.249 55.000 22.55 4.64 39.83 3.08
334 335 1.344763 CTAGCAGCCGCCTTAAGGTAT 59.655 52.381 22.55 3.92 39.83 2.73
335 336 1.420430 AGCAGCCGCCTTAAGGTATA 58.580 50.000 22.55 0.00 39.83 1.47
336 337 1.070289 AGCAGCCGCCTTAAGGTATAC 59.930 52.381 22.55 10.10 39.83 1.47
337 338 1.202604 GCAGCCGCCTTAAGGTATACA 60.203 52.381 22.55 0.00 37.57 2.29
338 339 2.550208 GCAGCCGCCTTAAGGTATACAT 60.550 50.000 22.55 0.00 37.57 2.29
339 340 3.740115 CAGCCGCCTTAAGGTATACATT 58.260 45.455 22.55 8.01 37.57 2.71
340 341 4.801581 GCAGCCGCCTTAAGGTATACATTA 60.802 45.833 22.55 5.90 37.57 1.90
341 342 5.488341 CAGCCGCCTTAAGGTATACATTAT 58.512 41.667 22.55 0.00 37.57 1.28
342 343 5.938125 CAGCCGCCTTAAGGTATACATTATT 59.062 40.000 22.55 0.00 37.57 1.40
343 344 7.101054 CAGCCGCCTTAAGGTATACATTATTA 58.899 38.462 22.55 0.00 37.57 0.98
344 345 7.769044 CAGCCGCCTTAAGGTATACATTATTAT 59.231 37.037 22.55 0.00 37.57 1.28
345 346 8.326529 AGCCGCCTTAAGGTATACATTATTATT 58.673 33.333 22.55 0.00 37.57 1.40
346 347 9.603921 GCCGCCTTAAGGTATACATTATTATTA 57.396 33.333 22.55 0.00 37.57 0.98
398 399 9.562583 TTTTGCAGGTATTTTGACGATTATTAC 57.437 29.630 0.00 0.00 0.00 1.89
399 400 8.500753 TTGCAGGTATTTTGACGATTATTACT 57.499 30.769 0.00 0.00 0.00 2.24
400 401 8.500753 TGCAGGTATTTTGACGATTATTACTT 57.499 30.769 0.00 0.00 0.00 2.24
401 402 9.602568 TGCAGGTATTTTGACGATTATTACTTA 57.397 29.630 0.00 0.00 0.00 2.24
420 421 9.939424 ATTACTTAGATACTACTCCCTTTGTCT 57.061 33.333 0.00 0.00 0.00 3.41
421 422 7.885009 ACTTAGATACTACTCCCTTTGTCTC 57.115 40.000 0.00 0.00 0.00 3.36
422 423 7.411808 ACTTAGATACTACTCCCTTTGTCTCA 58.588 38.462 0.00 0.00 0.00 3.27
423 424 8.062536 ACTTAGATACTACTCCCTTTGTCTCAT 58.937 37.037 0.00 0.00 0.00 2.90
424 425 6.723298 AGATACTACTCCCTTTGTCTCATG 57.277 41.667 0.00 0.00 0.00 3.07
425 426 6.198639 AGATACTACTCCCTTTGTCTCATGT 58.801 40.000 0.00 0.00 0.00 3.21
426 427 7.355101 AGATACTACTCCCTTTGTCTCATGTA 58.645 38.462 0.00 0.00 0.00 2.29
427 428 7.839705 AGATACTACTCCCTTTGTCTCATGTAA 59.160 37.037 0.00 0.00 0.00 2.41
428 429 6.287589 ACTACTCCCTTTGTCTCATGTAAG 57.712 41.667 0.00 0.00 0.00 2.34
429 430 6.017192 ACTACTCCCTTTGTCTCATGTAAGA 58.983 40.000 0.00 0.00 0.00 2.10
430 431 6.670027 ACTACTCCCTTTGTCTCATGTAAGAT 59.330 38.462 0.00 0.00 0.00 2.40
431 432 6.380079 ACTCCCTTTGTCTCATGTAAGATT 57.620 37.500 0.00 0.00 0.00 2.40
432 433 7.496346 ACTCCCTTTGTCTCATGTAAGATTA 57.504 36.000 0.00 0.00 0.00 1.75
433 434 8.095452 ACTCCCTTTGTCTCATGTAAGATTAT 57.905 34.615 0.00 0.00 0.00 1.28
434 435 8.552296 ACTCCCTTTGTCTCATGTAAGATTATT 58.448 33.333 0.00 0.00 0.00 1.40
435 436 9.401058 CTCCCTTTGTCTCATGTAAGATTATTT 57.599 33.333 0.00 0.00 0.00 1.40
436 437 9.753674 TCCCTTTGTCTCATGTAAGATTATTTT 57.246 29.630 0.00 0.00 0.00 1.82
460 461 6.701145 TTTTTGGCATAGTGTAGTGTCAAA 57.299 33.333 1.46 1.46 45.13 2.69
462 463 5.682943 TTGGCATAGTGTAGTGTCAAAAC 57.317 39.130 0.00 0.00 37.04 2.43
463 464 4.709250 TGGCATAGTGTAGTGTCAAAACA 58.291 39.130 0.00 0.00 0.00 2.83
464 465 5.126779 TGGCATAGTGTAGTGTCAAAACAA 58.873 37.500 0.00 0.00 37.08 2.83
465 466 5.590663 TGGCATAGTGTAGTGTCAAAACAAA 59.409 36.000 0.00 0.00 37.08 2.83
466 467 6.095580 TGGCATAGTGTAGTGTCAAAACAAAA 59.904 34.615 0.00 0.00 37.08 2.44
467 468 6.975772 GGCATAGTGTAGTGTCAAAACAAAAA 59.024 34.615 0.00 0.00 37.08 1.94
468 469 7.167468 GGCATAGTGTAGTGTCAAAACAAAAAG 59.833 37.037 0.00 0.00 37.08 2.27
469 470 7.167468 GCATAGTGTAGTGTCAAAACAAAAAGG 59.833 37.037 0.00 0.00 37.08 3.11
470 471 6.584185 AGTGTAGTGTCAAAACAAAAAGGT 57.416 33.333 0.00 0.00 37.08 3.50
471 472 6.386654 AGTGTAGTGTCAAAACAAAAAGGTG 58.613 36.000 0.00 0.00 37.08 4.00
472 473 6.015772 AGTGTAGTGTCAAAACAAAAAGGTGT 60.016 34.615 0.00 0.00 37.08 4.16
473 474 6.643360 GTGTAGTGTCAAAACAAAAAGGTGTT 59.357 34.615 0.00 0.00 43.58 3.32
474 475 7.808856 GTGTAGTGTCAAAACAAAAAGGTGTTA 59.191 33.333 0.00 0.00 40.86 2.41
475 476 8.524487 TGTAGTGTCAAAACAAAAAGGTGTTAT 58.476 29.630 0.00 0.00 40.86 1.89
478 479 9.744468 AGTGTCAAAACAAAAAGGTGTTATATC 57.256 29.630 0.00 0.00 40.86 1.63
479 480 9.522804 GTGTCAAAACAAAAAGGTGTTATATCA 57.477 29.630 0.00 0.00 40.86 2.15
486 487 7.989826 ACAAAAAGGTGTTATATCATGAGAGC 58.010 34.615 0.09 0.00 0.00 4.09
487 488 7.611467 ACAAAAAGGTGTTATATCATGAGAGCA 59.389 33.333 0.09 0.00 0.00 4.26
488 489 7.798596 AAAAGGTGTTATATCATGAGAGCAG 57.201 36.000 0.09 0.00 0.00 4.24
489 490 6.737720 AAGGTGTTATATCATGAGAGCAGA 57.262 37.500 0.09 0.00 0.00 4.26
490 491 6.931790 AGGTGTTATATCATGAGAGCAGAT 57.068 37.500 0.09 0.00 0.00 2.90
491 492 8.427902 AAGGTGTTATATCATGAGAGCAGATA 57.572 34.615 0.09 0.00 0.00 1.98
492 493 7.835822 AGGTGTTATATCATGAGAGCAGATAC 58.164 38.462 0.09 0.00 0.00 2.24
493 494 7.673504 AGGTGTTATATCATGAGAGCAGATACT 59.326 37.037 0.09 0.00 0.00 2.12
494 495 8.961634 GGTGTTATATCATGAGAGCAGATACTA 58.038 37.037 0.09 0.00 0.00 1.82
495 496 9.781834 GTGTTATATCATGAGAGCAGATACTAC 57.218 37.037 0.09 0.00 0.00 2.73
496 497 8.961634 TGTTATATCATGAGAGCAGATACTACC 58.038 37.037 0.09 0.00 0.00 3.18
497 498 8.961634 GTTATATCATGAGAGCAGATACTACCA 58.038 37.037 0.09 0.00 0.00 3.25
498 499 5.720371 ATCATGAGAGCAGATACTACCAC 57.280 43.478 0.09 0.00 0.00 4.16
499 500 4.536765 TCATGAGAGCAGATACTACCACA 58.463 43.478 0.00 0.00 0.00 4.17
500 501 5.143369 TCATGAGAGCAGATACTACCACAT 58.857 41.667 0.00 0.00 0.00 3.21
501 502 6.306987 TCATGAGAGCAGATACTACCACATA 58.693 40.000 0.00 0.00 0.00 2.29
502 503 6.432472 TCATGAGAGCAGATACTACCACATAG 59.568 42.308 0.00 0.00 36.89 2.23
503 504 5.941788 TGAGAGCAGATACTACCACATAGA 58.058 41.667 0.00 0.00 34.65 1.98
504 505 5.765677 TGAGAGCAGATACTACCACATAGAC 59.234 44.000 0.00 0.00 34.65 2.59
505 506 4.757657 AGAGCAGATACTACCACATAGACG 59.242 45.833 0.00 0.00 34.65 4.18
506 507 4.715713 AGCAGATACTACCACATAGACGA 58.284 43.478 0.00 0.00 34.65 4.20
507 508 4.757657 AGCAGATACTACCACATAGACGAG 59.242 45.833 0.00 0.00 34.65 4.18
508 509 4.755629 GCAGATACTACCACATAGACGAGA 59.244 45.833 0.00 0.00 34.65 4.04
509 510 5.413213 GCAGATACTACCACATAGACGAGAT 59.587 44.000 0.00 0.00 34.65 2.75
510 511 6.621812 GCAGATACTACCACATAGACGAGATG 60.622 46.154 0.00 0.00 34.65 2.90
511 512 6.651225 CAGATACTACCACATAGACGAGATGA 59.349 42.308 0.00 0.00 34.65 2.92
512 513 7.173390 CAGATACTACCACATAGACGAGATGAA 59.827 40.741 0.00 0.00 34.65 2.57
513 514 7.720074 AGATACTACCACATAGACGAGATGAAA 59.280 37.037 0.00 0.00 34.65 2.69
514 515 5.892568 ACTACCACATAGACGAGATGAAAC 58.107 41.667 0.00 0.00 34.65 2.78
515 516 4.124851 ACCACATAGACGAGATGAAACC 57.875 45.455 0.00 0.00 0.00 3.27
516 517 3.118738 ACCACATAGACGAGATGAAACCC 60.119 47.826 0.00 0.00 0.00 4.11
517 518 3.133003 CCACATAGACGAGATGAAACCCT 59.867 47.826 0.00 0.00 0.00 4.34
518 519 4.363999 CACATAGACGAGATGAAACCCTC 58.636 47.826 0.00 0.00 0.00 4.30
523 524 2.493713 CGAGATGAAACCCTCGGTAG 57.506 55.000 0.00 0.00 45.93 3.18
524 525 1.067212 CGAGATGAAACCCTCGGTAGG 59.933 57.143 0.00 0.00 45.93 3.18
535 536 0.592148 CTCGGTAGGACTACGCATCC 59.408 60.000 3.62 0.00 36.94 3.51
536 537 0.820891 TCGGTAGGACTACGCATCCC 60.821 60.000 3.62 0.00 36.86 3.85
537 538 0.822532 CGGTAGGACTACGCATCCCT 60.823 60.000 3.62 0.00 36.86 4.20
538 539 1.544093 CGGTAGGACTACGCATCCCTA 60.544 57.143 3.62 0.00 36.86 3.53
539 540 1.885233 GGTAGGACTACGCATCCCTAC 59.115 57.143 13.22 13.22 46.37 3.18
540 541 2.579873 GTAGGACTACGCATCCCTACA 58.420 52.381 15.47 0.00 46.35 2.74
541 542 1.400737 AGGACTACGCATCCCTACAC 58.599 55.000 0.00 0.00 36.86 2.90
542 543 0.388294 GGACTACGCATCCCTACACC 59.612 60.000 0.00 0.00 0.00 4.16
543 544 1.108776 GACTACGCATCCCTACACCA 58.891 55.000 0.00 0.00 0.00 4.17
544 545 1.479323 GACTACGCATCCCTACACCAA 59.521 52.381 0.00 0.00 0.00 3.67
545 546 1.903860 ACTACGCATCCCTACACCAAA 59.096 47.619 0.00 0.00 0.00 3.28
546 547 2.277084 CTACGCATCCCTACACCAAAC 58.723 52.381 0.00 0.00 0.00 2.93
547 548 0.398696 ACGCATCCCTACACCAAACA 59.601 50.000 0.00 0.00 0.00 2.83
548 549 1.202830 ACGCATCCCTACACCAAACAA 60.203 47.619 0.00 0.00 0.00 2.83
549 550 1.199097 CGCATCCCTACACCAAACAAC 59.801 52.381 0.00 0.00 0.00 3.32
550 551 2.235016 GCATCCCTACACCAAACAACA 58.765 47.619 0.00 0.00 0.00 3.33
551 552 2.825532 GCATCCCTACACCAAACAACAT 59.174 45.455 0.00 0.00 0.00 2.71
552 553 3.367292 GCATCCCTACACCAAACAACATG 60.367 47.826 0.00 0.00 0.00 3.21
553 554 3.586470 TCCCTACACCAAACAACATGT 57.414 42.857 0.00 0.00 0.00 3.21
554 555 3.218453 TCCCTACACCAAACAACATGTG 58.782 45.455 0.00 0.00 34.92 3.21
555 556 2.955660 CCCTACACCAAACAACATGTGT 59.044 45.455 0.00 0.00 44.64 3.72
556 557 3.243367 CCCTACACCAAACAACATGTGTG 60.243 47.826 0.00 4.54 40.60 3.82
557 558 3.629855 CCTACACCAAACAACATGTGTGA 59.370 43.478 16.13 2.66 37.81 3.58
558 559 4.097135 CCTACACCAAACAACATGTGTGAA 59.903 41.667 16.13 0.00 37.81 3.18
559 560 4.108699 ACACCAAACAACATGTGTGAAG 57.891 40.909 16.13 0.75 37.81 3.02
560 561 2.859538 CACCAAACAACATGTGTGAAGC 59.140 45.455 0.00 0.00 37.81 3.86
561 562 2.118683 CCAAACAACATGTGTGAAGCG 58.881 47.619 0.00 0.00 37.81 4.68
562 563 2.223456 CCAAACAACATGTGTGAAGCGA 60.223 45.455 0.00 0.00 37.81 4.93
563 564 3.038017 CAAACAACATGTGTGAAGCGAG 58.962 45.455 0.00 0.00 37.81 5.03
564 565 2.238942 ACAACATGTGTGAAGCGAGA 57.761 45.000 0.00 0.00 39.72 4.04
565 566 2.138320 ACAACATGTGTGAAGCGAGAG 58.862 47.619 0.00 0.00 39.72 3.20
566 567 2.224042 ACAACATGTGTGAAGCGAGAGA 60.224 45.455 0.00 0.00 39.72 3.10
567 568 2.802247 CAACATGTGTGAAGCGAGAGAA 59.198 45.455 0.00 0.00 0.00 2.87
568 569 2.681706 ACATGTGTGAAGCGAGAGAAG 58.318 47.619 0.00 0.00 0.00 2.85
569 570 1.392853 CATGTGTGAAGCGAGAGAAGC 59.607 52.381 0.00 0.00 0.00 3.86
584 585 0.673956 GAAGCTTCAACCCGGAGTCC 60.674 60.000 21.67 0.00 0.00 3.85
592 593 1.553248 CAACCCGGAGTCCACTAATGA 59.447 52.381 10.49 0.00 0.00 2.57
614 615 7.622893 TGATATTCAATTCATGACGGTCAAA 57.377 32.000 15.72 6.31 37.92 2.69
648 649 5.381174 TGAAGATCAAGAAAGCCAATGTG 57.619 39.130 0.00 0.00 0.00 3.21
649 650 3.863142 AGATCAAGAAAGCCAATGTGC 57.137 42.857 0.00 0.00 0.00 4.57
650 651 3.159472 AGATCAAGAAAGCCAATGTGCA 58.841 40.909 0.00 0.00 0.00 4.57
651 652 3.575256 AGATCAAGAAAGCCAATGTGCAA 59.425 39.130 0.00 0.00 0.00 4.08
652 653 3.096489 TCAAGAAAGCCAATGTGCAAC 57.904 42.857 0.00 0.00 37.35 4.17
653 654 2.694628 TCAAGAAAGCCAATGTGCAACT 59.305 40.909 0.00 0.00 38.04 3.16
654 655 3.054878 CAAGAAAGCCAATGTGCAACTC 58.945 45.455 0.00 0.00 38.04 3.01
655 656 1.267806 AGAAAGCCAATGTGCAACTCG 59.732 47.619 0.00 0.00 38.04 4.18
656 657 1.001378 GAAAGCCAATGTGCAACTCGT 60.001 47.619 0.00 0.00 38.04 4.18
657 658 1.032014 AAGCCAATGTGCAACTCGTT 58.968 45.000 0.00 0.00 38.04 3.85
658 659 1.890876 AGCCAATGTGCAACTCGTTA 58.109 45.000 0.00 0.00 38.04 3.18
659 660 1.535462 AGCCAATGTGCAACTCGTTAC 59.465 47.619 0.00 0.00 38.04 2.50
660 661 1.265635 GCCAATGTGCAACTCGTTACA 59.734 47.619 0.00 0.00 38.04 2.41
661 662 2.665519 GCCAATGTGCAACTCGTTACAG 60.666 50.000 0.00 0.00 38.04 2.74
662 663 2.548057 CCAATGTGCAACTCGTTACAGT 59.452 45.455 0.00 0.00 38.04 3.55
663 664 3.003275 CCAATGTGCAACTCGTTACAGTT 59.997 43.478 0.00 0.00 37.05 3.16
664 665 4.212425 CCAATGTGCAACTCGTTACAGTTA 59.788 41.667 0.00 0.00 34.70 2.24
665 666 5.277586 CCAATGTGCAACTCGTTACAGTTAA 60.278 40.000 0.00 0.00 34.70 2.01
666 667 4.782252 TGTGCAACTCGTTACAGTTAAC 57.218 40.909 0.00 0.00 34.70 2.01
667 668 3.556775 TGTGCAACTCGTTACAGTTAACC 59.443 43.478 0.88 0.00 34.70 2.85
668 669 3.556775 GTGCAACTCGTTACAGTTAACCA 59.443 43.478 0.88 0.00 34.70 3.67
669 670 4.034279 GTGCAACTCGTTACAGTTAACCAA 59.966 41.667 0.88 0.00 34.70 3.67
670 671 4.634883 TGCAACTCGTTACAGTTAACCAAA 59.365 37.500 0.88 0.00 34.70 3.28
721 737 0.373716 CCGACGGCAGCAATAGAAAC 59.626 55.000 0.00 0.00 0.00 2.78
724 740 2.095969 CGACGGCAGCAATAGAAACAAA 60.096 45.455 0.00 0.00 0.00 2.83
725 741 3.234386 GACGGCAGCAATAGAAACAAAC 58.766 45.455 0.00 0.00 0.00 2.93
726 742 2.030274 ACGGCAGCAATAGAAACAAACC 60.030 45.455 0.00 0.00 0.00 3.27
729 745 3.317150 GCAGCAATAGAAACAAACCACC 58.683 45.455 0.00 0.00 0.00 4.61
818 834 1.000896 AACCGCCATAGCCAGCTTT 60.001 52.632 0.00 0.00 34.57 3.51
903 920 1.301874 CGCACGTTTACCCCTTCCA 60.302 57.895 0.00 0.00 0.00 3.53
921 938 0.994995 CATCGAAACCGACTCTGCTG 59.005 55.000 0.00 0.00 39.04 4.41
979 1001 4.280494 ACGAGAGCGCGGTGTGTT 62.280 61.111 18.92 0.00 42.48 3.32
1057 1079 4.148825 ACCGTCTGATGGCGCTCC 62.149 66.667 15.80 0.00 0.00 4.70
1308 1330 1.803519 CCTCAAGCTGCTCGACGAC 60.804 63.158 1.00 0.00 0.00 4.34
1364 1392 1.153823 CCGCGTGGTCCTCTAACAG 60.154 63.158 6.91 0.00 0.00 3.16
1370 1398 2.612972 CGTGGTCCTCTAACAGCAACAT 60.613 50.000 0.00 0.00 0.00 2.71
1605 1633 2.093973 CAGCACTAGGAAACTGACGGAT 60.094 50.000 0.00 0.00 43.88 4.18
1606 1634 2.093973 AGCACTAGGAAACTGACGGATG 60.094 50.000 0.00 0.00 43.88 3.51
1777 1805 3.146618 TCGACAACGAGCTTATCTTCC 57.853 47.619 0.00 0.00 43.81 3.46
1921 1949 0.389426 ATACGACGCCGCAGAAAACT 60.389 50.000 0.00 0.00 39.95 2.66
1932 1960 2.165998 GCAGAAAACTTGGATCAGGCT 58.834 47.619 0.00 0.00 0.00 4.58
2062 2090 2.690497 CAGATAAGGAAGTCTCGGCTGA 59.310 50.000 0.00 0.00 0.00 4.26
2079 2107 2.485814 GCTGAACTTTGGATCAGGTGAC 59.514 50.000 5.08 0.00 41.00 3.67
2113 2141 2.886124 GCGGCTACGAGCTTGTCC 60.886 66.667 10.71 5.78 44.60 4.02
2274 2302 2.470257 CGTGTACAAGTTCAAGGACGAC 59.530 50.000 0.00 0.00 0.00 4.34
2292 2320 1.078214 CCTGCTCAAGGCCATCGAA 60.078 57.895 5.01 0.00 39.93 3.71
2352 2380 0.108138 GCAAGACCACGCAGATACCT 60.108 55.000 0.00 0.00 0.00 3.08
2526 2554 1.367471 CTGCACCTCGGACAAGACA 59.633 57.895 0.00 0.00 0.00 3.41
2712 2740 2.588314 CTGCTCATCTCCAGCGCC 60.588 66.667 2.29 0.00 40.01 6.53
2934 2962 0.035725 TCGAGACGGTGGAAGAGCTA 60.036 55.000 0.00 0.00 0.00 3.32
3303 3331 2.875485 CACGACCTGGACGACGAT 59.125 61.111 24.26 0.00 34.70 3.73
3349 3377 4.182433 TGGCCAACGTGGTGCTGA 62.182 61.111 0.61 0.00 40.46 4.26
3382 3410 1.003839 GGCATCAACGACCTGGTGA 60.004 57.895 2.82 0.00 27.97 4.02
3540 3568 1.522580 GCTCTCCAAGGCCATCGTC 60.523 63.158 5.01 0.00 0.00 4.20
3722 3750 2.841389 CGTGTACAACGCGTGGAC 59.159 61.111 23.00 17.95 46.99 4.02
3959 3987 2.185350 CGTCAAGAGCCGGCAGAT 59.815 61.111 31.54 8.11 0.00 2.90
4193 4221 1.002792 GCAAACCTGAACCTCGACAAC 60.003 52.381 0.00 0.00 0.00 3.32
4223 4251 7.176690 TCAACCTAGAAATCCTGGAATTCAAAC 59.823 37.037 22.87 0.75 0.00 2.93
4235 4263 8.573035 TCCTGGAATTCAAACTTGTGTATAAAC 58.427 33.333 7.93 0.00 0.00 2.01
4273 4309 9.929180 AAGATTTTAACTCCTAAAAATTCCAGC 57.071 29.630 0.00 0.00 41.64 4.85
4297 4347 8.031277 AGCACATTCTCTCCATTTCAAATTAAC 58.969 33.333 0.00 0.00 0.00 2.01
4299 4349 9.565213 CACATTCTCTCCATTTCAAATTAACTC 57.435 33.333 0.00 0.00 0.00 3.01
4352 4407 4.983671 AAAAATTCTATTCCCGCTGTCC 57.016 40.909 0.00 0.00 0.00 4.02
4353 4408 2.640316 AATTCTATTCCCGCTGTCCC 57.360 50.000 0.00 0.00 0.00 4.46
4354 4409 1.507140 ATTCTATTCCCGCTGTCCCA 58.493 50.000 0.00 0.00 0.00 4.37
4355 4410 1.507140 TTCTATTCCCGCTGTCCCAT 58.493 50.000 0.00 0.00 0.00 4.00
4356 4411 2.391926 TCTATTCCCGCTGTCCCATA 57.608 50.000 0.00 0.00 0.00 2.74
4357 4412 2.684943 TCTATTCCCGCTGTCCCATAA 58.315 47.619 0.00 0.00 0.00 1.90
4358 4413 3.248024 TCTATTCCCGCTGTCCCATAAT 58.752 45.455 0.00 0.00 0.00 1.28
4359 4414 4.422057 TCTATTCCCGCTGTCCCATAATA 58.578 43.478 0.00 0.00 0.00 0.98
4360 4415 5.030147 TCTATTCCCGCTGTCCCATAATAT 58.970 41.667 0.00 0.00 0.00 1.28
4361 4416 6.199376 TCTATTCCCGCTGTCCCATAATATA 58.801 40.000 0.00 0.00 0.00 0.86
4362 4417 5.772393 ATTCCCGCTGTCCCATAATATAA 57.228 39.130 0.00 0.00 0.00 0.98
4363 4418 4.819105 TCCCGCTGTCCCATAATATAAG 57.181 45.455 0.00 0.00 0.00 1.73
4364 4419 4.422057 TCCCGCTGTCCCATAATATAAGA 58.578 43.478 0.00 0.00 0.00 2.10
4365 4420 4.466370 TCCCGCTGTCCCATAATATAAGAG 59.534 45.833 0.00 0.00 0.00 2.85
4366 4421 4.184629 CCGCTGTCCCATAATATAAGAGC 58.815 47.826 0.00 0.00 0.00 4.09
4367 4422 3.859961 CGCTGTCCCATAATATAAGAGCG 59.140 47.826 0.00 0.00 40.55 5.03
4368 4423 4.618460 CGCTGTCCCATAATATAAGAGCGT 60.618 45.833 0.00 0.00 41.31 5.07
4369 4424 5.238583 GCTGTCCCATAATATAAGAGCGTT 58.761 41.667 0.00 0.00 0.00 4.84
4370 4425 5.701290 GCTGTCCCATAATATAAGAGCGTTT 59.299 40.000 0.00 0.00 0.00 3.60
4371 4426 6.204882 GCTGTCCCATAATATAAGAGCGTTTT 59.795 38.462 0.00 0.00 0.00 2.43
4372 4427 7.255139 GCTGTCCCATAATATAAGAGCGTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
4391 4446 5.660629 TTTTTACACCAGTGTATGTGACG 57.339 39.130 11.24 0.00 44.54 4.35
4392 4447 3.306917 TTACACCAGTGTATGTGACGG 57.693 47.619 11.24 0.00 44.54 4.79
4393 4448 1.334160 ACACCAGTGTATGTGACGGA 58.666 50.000 0.54 0.00 42.90 4.69
4394 4449 1.272490 ACACCAGTGTATGTGACGGAG 59.728 52.381 0.54 0.00 42.90 4.63
4395 4450 0.895530 ACCAGTGTATGTGACGGAGG 59.104 55.000 0.00 0.00 0.00 4.30
4396 4451 0.175760 CCAGTGTATGTGACGGAGGG 59.824 60.000 0.00 0.00 0.00 4.30
4397 4452 1.182667 CAGTGTATGTGACGGAGGGA 58.817 55.000 0.00 0.00 0.00 4.20
4398 4453 1.135139 CAGTGTATGTGACGGAGGGAG 59.865 57.143 0.00 0.00 0.00 4.30
4399 4454 1.183549 GTGTATGTGACGGAGGGAGT 58.816 55.000 0.00 0.00 0.00 3.85
4400 4455 2.025605 AGTGTATGTGACGGAGGGAGTA 60.026 50.000 0.00 0.00 0.00 2.59
4401 4456 2.358267 GTGTATGTGACGGAGGGAGTAG 59.642 54.545 0.00 0.00 0.00 2.57
4421 4476 7.307632 GGAGTAGCATCTACAGCAACAAATATG 60.308 40.741 6.74 0.00 0.00 1.78
4422 4477 7.275183 AGTAGCATCTACAGCAACAAATATGA 58.725 34.615 6.74 0.00 0.00 2.15
4423 4478 7.770433 AGTAGCATCTACAGCAACAAATATGAA 59.230 33.333 6.74 0.00 0.00 2.57
4424 4479 7.395190 AGCATCTACAGCAACAAATATGAAA 57.605 32.000 0.00 0.00 0.00 2.69
4425 4480 7.829725 AGCATCTACAGCAACAAATATGAAAA 58.170 30.769 0.00 0.00 0.00 2.29
4426 4481 8.472413 AGCATCTACAGCAACAAATATGAAAAT 58.528 29.630 0.00 0.00 0.00 1.82
4427 4482 9.734620 GCATCTACAGCAACAAATATGAAAATA 57.265 29.630 0.00 0.00 0.00 1.40
4468 4524 6.098266 ACTGATATGGTGTACAGATGTTGCTA 59.902 38.462 0.00 0.00 29.51 3.49
4512 4575 4.744570 TGATCAAACTTACTAGCAGGACG 58.255 43.478 0.00 0.00 0.00 4.79
4545 4610 8.465273 AACTTCCCAAGTAATTAATCCATAGC 57.535 34.615 0.00 0.00 41.91 2.97
4644 4710 5.822519 GTGCATAGGTTTCCACTTATCATGA 59.177 40.000 0.00 0.00 0.00 3.07
4669 4735 0.630673 TCCTACATGCCATGGCCTTT 59.369 50.000 33.44 19.52 41.09 3.11
5041 5113 2.576615 GGGGCTTTCCATAGTGATGAC 58.423 52.381 0.00 0.00 34.73 3.06
5042 5114 2.576615 GGGCTTTCCATAGTGATGACC 58.423 52.381 0.00 0.00 34.73 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.673298 TGTAGCACCACGTGGCGG 62.673 66.667 34.26 26.21 39.32 6.13
7 8 3.112075 CTGTAGCACCACGTGGCG 61.112 66.667 34.26 26.40 39.32 5.69
8 9 2.742372 CCTGTAGCACCACGTGGC 60.742 66.667 34.26 21.02 39.32 5.01
9 10 1.079819 CTCCTGTAGCACCACGTGG 60.080 63.158 32.83 32.83 42.17 4.94
10 11 4.578913 CTCCTGTAGCACCACGTG 57.421 61.111 9.08 9.08 36.51 4.49
19 20 4.554363 CCGCCGACGCTCCTGTAG 62.554 72.222 0.00 0.00 38.22 2.74
29 30 4.465512 CAATGCAGCACCGCCGAC 62.466 66.667 0.00 0.00 0.00 4.79
32 33 3.818787 CTCCAATGCAGCACCGCC 61.819 66.667 0.00 0.00 0.00 6.13
33 34 1.097547 ATACTCCAATGCAGCACCGC 61.098 55.000 0.00 0.00 0.00 5.68
34 35 0.940126 GATACTCCAATGCAGCACCG 59.060 55.000 0.00 0.00 0.00 4.94
35 36 1.672881 GTGATACTCCAATGCAGCACC 59.327 52.381 0.00 0.00 0.00 5.01
36 37 1.672881 GGTGATACTCCAATGCAGCAC 59.327 52.381 0.00 0.00 0.00 4.40
37 38 1.281577 TGGTGATACTCCAATGCAGCA 59.718 47.619 0.00 0.00 34.97 4.41
38 39 2.042686 TGGTGATACTCCAATGCAGC 57.957 50.000 0.00 0.00 31.50 5.25
39 40 2.357009 GCTTGGTGATACTCCAATGCAG 59.643 50.000 15.00 4.65 42.89 4.41
40 41 2.368439 GCTTGGTGATACTCCAATGCA 58.632 47.619 15.00 0.00 42.89 3.96
41 42 1.678101 GGCTTGGTGATACTCCAATGC 59.322 52.381 5.89 10.27 42.89 3.56
42 43 2.684881 GTGGCTTGGTGATACTCCAATG 59.315 50.000 5.89 3.14 42.89 2.82
43 44 2.578021 AGTGGCTTGGTGATACTCCAAT 59.422 45.455 5.89 0.00 42.89 3.16
44 45 1.985159 AGTGGCTTGGTGATACTCCAA 59.015 47.619 0.00 0.00 41.84 3.53
45 46 1.656587 AGTGGCTTGGTGATACTCCA 58.343 50.000 0.00 0.00 0.00 3.86
46 47 3.031736 TCTAGTGGCTTGGTGATACTCC 58.968 50.000 0.00 0.00 0.00 3.85
47 48 3.491792 GCTCTAGTGGCTTGGTGATACTC 60.492 52.174 0.00 0.00 0.00 2.59
48 49 2.432510 GCTCTAGTGGCTTGGTGATACT 59.567 50.000 0.00 0.00 0.00 2.12
49 50 2.168521 TGCTCTAGTGGCTTGGTGATAC 59.831 50.000 10.61 0.00 0.00 2.24
50 51 2.466846 TGCTCTAGTGGCTTGGTGATA 58.533 47.619 10.61 0.00 0.00 2.15
51 52 1.279496 TGCTCTAGTGGCTTGGTGAT 58.721 50.000 10.61 0.00 0.00 3.06
52 53 1.208052 GATGCTCTAGTGGCTTGGTGA 59.792 52.381 10.61 0.00 0.00 4.02
53 54 1.661341 GATGCTCTAGTGGCTTGGTG 58.339 55.000 10.61 0.00 0.00 4.17
54 55 0.176680 CGATGCTCTAGTGGCTTGGT 59.823 55.000 10.61 0.00 0.00 3.67
55 56 0.176680 ACGATGCTCTAGTGGCTTGG 59.823 55.000 10.61 8.52 0.00 3.61
56 57 1.134995 TCACGATGCTCTAGTGGCTTG 60.135 52.381 10.61 4.71 36.60 4.01
57 58 1.186200 TCACGATGCTCTAGTGGCTT 58.814 50.000 10.61 5.61 36.60 4.35
58 59 1.068281 CATCACGATGCTCTAGTGGCT 59.932 52.381 10.61 0.00 36.60 4.75
59 60 1.495878 CATCACGATGCTCTAGTGGC 58.504 55.000 0.00 4.07 36.60 5.01
69 70 2.222678 GCTCCATTGTAGCATCACGATG 59.777 50.000 2.53 2.53 39.83 3.84
70 71 2.158914 TGCTCCATTGTAGCATCACGAT 60.159 45.455 0.00 0.00 44.78 3.73
71 72 1.206849 TGCTCCATTGTAGCATCACGA 59.793 47.619 0.00 0.00 44.78 4.35
72 73 1.655484 TGCTCCATTGTAGCATCACG 58.345 50.000 0.00 0.00 44.78 4.35
77 78 1.004628 ATGGTGTGCTCCATTGTAGCA 59.995 47.619 0.00 0.00 44.75 3.49
78 79 1.672881 GATGGTGTGCTCCATTGTAGC 59.327 52.381 7.15 0.00 46.72 3.58
79 80 1.935873 CGATGGTGTGCTCCATTGTAG 59.064 52.381 7.15 0.00 46.72 2.74
80 81 1.552792 TCGATGGTGTGCTCCATTGTA 59.447 47.619 15.93 5.19 46.72 2.41
81 82 0.324614 TCGATGGTGTGCTCCATTGT 59.675 50.000 15.93 0.00 46.72 2.71
82 83 1.332686 CATCGATGGTGTGCTCCATTG 59.667 52.381 17.96 12.14 46.72 2.82
83 84 1.671979 CATCGATGGTGTGCTCCATT 58.328 50.000 17.96 0.00 46.72 3.16
85 86 1.450134 GCATCGATGGTGTGCTCCA 60.450 57.895 26.00 0.00 42.01 3.86
86 87 1.026182 TTGCATCGATGGTGTGCTCC 61.026 55.000 26.00 7.88 39.52 4.70
87 88 0.097674 GTTGCATCGATGGTGTGCTC 59.902 55.000 26.00 8.59 39.52 4.26
88 89 0.321919 AGTTGCATCGATGGTGTGCT 60.322 50.000 26.00 0.00 39.52 4.40
89 90 0.097674 GAGTTGCATCGATGGTGTGC 59.902 55.000 26.00 13.99 39.26 4.57
90 91 1.662629 GAGAGTTGCATCGATGGTGTG 59.337 52.381 26.00 2.81 0.00 3.82
91 92 1.737029 CGAGAGTTGCATCGATGGTGT 60.737 52.381 26.00 0.00 41.40 4.16
92 93 0.926155 CGAGAGTTGCATCGATGGTG 59.074 55.000 26.00 3.62 41.40 4.17
93 94 0.807667 GCGAGAGTTGCATCGATGGT 60.808 55.000 26.00 0.00 41.40 3.55
94 95 1.493950 GGCGAGAGTTGCATCGATGG 61.494 60.000 26.00 8.44 41.40 3.51
95 96 0.807275 TGGCGAGAGTTGCATCGATG 60.807 55.000 21.27 21.27 41.40 3.84
96 97 0.108186 TTGGCGAGAGTTGCATCGAT 60.108 50.000 11.43 0.00 41.40 3.59
97 98 0.320334 TTTGGCGAGAGTTGCATCGA 60.320 50.000 11.43 0.00 41.40 3.59
98 99 0.095935 CTTTGGCGAGAGTTGCATCG 59.904 55.000 3.09 3.09 41.79 3.84
99 100 0.179179 GCTTTGGCGAGAGTTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
100 101 0.607489 AGCTTTGGCGAGAGTTGCAT 60.607 50.000 0.00 0.00 44.37 3.96
101 102 0.034756 TAGCTTTGGCGAGAGTTGCA 59.965 50.000 0.00 0.00 44.37 4.08
102 103 1.063174 CATAGCTTTGGCGAGAGTTGC 59.937 52.381 0.00 0.00 44.37 4.17
103 104 2.094894 CACATAGCTTTGGCGAGAGTTG 59.905 50.000 9.08 0.00 44.37 3.16
104 105 2.350522 CACATAGCTTTGGCGAGAGTT 58.649 47.619 9.08 0.00 44.37 3.01
105 106 2.009042 GCACATAGCTTTGGCGAGAGT 61.009 52.381 9.08 0.00 44.37 3.24
106 107 0.654683 GCACATAGCTTTGGCGAGAG 59.345 55.000 9.08 0.00 44.37 3.20
107 108 2.767536 GCACATAGCTTTGGCGAGA 58.232 52.632 9.08 0.00 44.37 4.04
111 112 1.137404 CCACGCACATAGCTTTGGC 59.863 57.895 9.08 8.06 42.61 4.52
112 113 0.168788 CACCACGCACATAGCTTTGG 59.831 55.000 9.08 0.00 45.14 3.28
113 114 0.874390 ACACCACGCACATAGCTTTG 59.126 50.000 2.27 2.27 42.61 2.77
114 115 0.874390 CACACCACGCACATAGCTTT 59.126 50.000 0.00 0.00 42.61 3.51
115 116 0.034756 TCACACCACGCACATAGCTT 59.965 50.000 0.00 0.00 42.61 3.74
116 117 0.250234 ATCACACCACGCACATAGCT 59.750 50.000 0.00 0.00 42.61 3.32
117 118 0.374758 CATCACACCACGCACATAGC 59.625 55.000 0.00 0.00 40.87 2.97
118 119 1.929169 CTCATCACACCACGCACATAG 59.071 52.381 0.00 0.00 0.00 2.23
119 120 2.006552 GCTCATCACACCACGCACATA 61.007 52.381 0.00 0.00 0.00 2.29
120 121 1.300971 GCTCATCACACCACGCACAT 61.301 55.000 0.00 0.00 0.00 3.21
121 122 1.960763 GCTCATCACACCACGCACA 60.961 57.895 0.00 0.00 0.00 4.57
122 123 2.863153 GCTCATCACACCACGCAC 59.137 61.111 0.00 0.00 0.00 5.34
123 124 2.738139 CGCTCATCACACCACGCA 60.738 61.111 0.00 0.00 0.00 5.24
124 125 3.490759 CCGCTCATCACACCACGC 61.491 66.667 0.00 0.00 0.00 5.34
125 126 2.815211 CCCGCTCATCACACCACG 60.815 66.667 0.00 0.00 0.00 4.94
126 127 2.257409 ATCCCCGCTCATCACACCAC 62.257 60.000 0.00 0.00 0.00 4.16
127 128 1.995066 ATCCCCGCTCATCACACCA 60.995 57.895 0.00 0.00 0.00 4.17
128 129 1.524621 CATCCCCGCTCATCACACC 60.525 63.158 0.00 0.00 0.00 4.16
129 130 2.182842 GCATCCCCGCTCATCACAC 61.183 63.158 0.00 0.00 0.00 3.82
130 131 2.190313 GCATCCCCGCTCATCACA 59.810 61.111 0.00 0.00 0.00 3.58
131 132 1.890979 CAGCATCCCCGCTCATCAC 60.891 63.158 0.00 0.00 41.38 3.06
132 133 2.507452 CAGCATCCCCGCTCATCA 59.493 61.111 0.00 0.00 41.38 3.07
133 134 2.281345 CCAGCATCCCCGCTCATC 60.281 66.667 0.00 0.00 41.38 2.92
134 135 2.769621 TCCAGCATCCCCGCTCAT 60.770 61.111 0.00 0.00 41.38 2.90
135 136 3.473647 CTCCAGCATCCCCGCTCA 61.474 66.667 0.00 0.00 41.38 4.26
136 137 4.247380 CCTCCAGCATCCCCGCTC 62.247 72.222 0.00 0.00 41.38 5.03
140 141 3.645268 AAACGCCTCCAGCATCCCC 62.645 63.158 0.00 0.00 44.04 4.81
141 142 2.044946 AAACGCCTCCAGCATCCC 60.045 61.111 0.00 0.00 44.04 3.85
142 143 1.372087 CTGAAACGCCTCCAGCATCC 61.372 60.000 0.00 0.00 44.04 3.51
143 144 1.372087 CCTGAAACGCCTCCAGCATC 61.372 60.000 0.00 0.00 44.04 3.91
144 145 1.377725 CCTGAAACGCCTCCAGCAT 60.378 57.895 0.00 0.00 44.04 3.79
145 146 2.032528 CCTGAAACGCCTCCAGCA 59.967 61.111 0.00 0.00 44.04 4.41
146 147 2.747855 CCCTGAAACGCCTCCAGC 60.748 66.667 0.00 0.00 38.52 4.85
147 148 2.045926 CCCCTGAAACGCCTCCAG 60.046 66.667 0.00 0.00 0.00 3.86
148 149 3.646715 CCCCCTGAAACGCCTCCA 61.647 66.667 0.00 0.00 0.00 3.86
174 175 3.282374 ATTCCCTCCCCAACACGCC 62.282 63.158 0.00 0.00 0.00 5.68
175 176 1.749258 GATTCCCTCCCCAACACGC 60.749 63.158 0.00 0.00 0.00 5.34
176 177 1.449601 CGATTCCCTCCCCAACACG 60.450 63.158 0.00 0.00 0.00 4.49
177 178 0.546598 ATCGATTCCCTCCCCAACAC 59.453 55.000 0.00 0.00 0.00 3.32
178 179 0.546122 CATCGATTCCCTCCCCAACA 59.454 55.000 0.00 0.00 0.00 3.33
179 180 0.179018 CCATCGATTCCCTCCCCAAC 60.179 60.000 0.00 0.00 0.00 3.77
180 181 1.994885 GCCATCGATTCCCTCCCCAA 61.995 60.000 0.00 0.00 0.00 4.12
181 182 2.452064 GCCATCGATTCCCTCCCCA 61.452 63.158 0.00 0.00 0.00 4.96
182 183 1.783250 ATGCCATCGATTCCCTCCCC 61.783 60.000 0.00 0.00 0.00 4.81
183 184 0.607489 CATGCCATCGATTCCCTCCC 60.607 60.000 0.00 0.00 0.00 4.30
184 185 0.607489 CCATGCCATCGATTCCCTCC 60.607 60.000 0.00 0.00 0.00 4.30
185 186 0.109342 ACCATGCCATCGATTCCCTC 59.891 55.000 0.00 0.00 0.00 4.30
186 187 0.109342 GACCATGCCATCGATTCCCT 59.891 55.000 0.00 0.00 0.00 4.20
187 188 0.109342 AGACCATGCCATCGATTCCC 59.891 55.000 0.00 0.00 0.00 3.97
188 189 1.202687 TGAGACCATGCCATCGATTCC 60.203 52.381 0.00 0.00 0.00 3.01
189 190 2.141517 CTGAGACCATGCCATCGATTC 58.858 52.381 0.00 0.00 0.00 2.52
190 191 1.813092 GCTGAGACCATGCCATCGATT 60.813 52.381 0.00 0.00 0.00 3.34
191 192 0.250209 GCTGAGACCATGCCATCGAT 60.250 55.000 0.00 0.00 0.00 3.59
192 193 1.144716 GCTGAGACCATGCCATCGA 59.855 57.895 0.00 0.00 0.00 3.59
193 194 2.242572 CGCTGAGACCATGCCATCG 61.243 63.158 0.00 0.00 0.00 3.84
194 195 1.153289 ACGCTGAGACCATGCCATC 60.153 57.895 0.00 0.00 0.00 3.51
195 196 1.450848 CACGCTGAGACCATGCCAT 60.451 57.895 0.00 0.00 0.00 4.40
196 197 2.046988 CACGCTGAGACCATGCCA 60.047 61.111 0.00 0.00 0.00 4.92
197 198 2.821366 CCACGCTGAGACCATGCC 60.821 66.667 0.00 0.00 0.00 4.40
198 199 3.503363 GCCACGCTGAGACCATGC 61.503 66.667 0.00 0.00 0.00 4.06
199 200 2.821366 GGCCACGCTGAGACCATG 60.821 66.667 0.00 0.00 0.00 3.66
200 201 4.101448 GGGCCACGCTGAGACCAT 62.101 66.667 4.39 0.00 0.00 3.55
202 203 4.767255 CAGGGCCACGCTGAGACC 62.767 72.222 6.18 0.00 45.41 3.85
203 204 3.941657 GACAGGGCCACGCTGAGAC 62.942 68.421 17.28 5.81 45.41 3.36
204 205 3.695606 GACAGGGCCACGCTGAGA 61.696 66.667 17.28 0.00 45.41 3.27
205 206 3.320879 ATGACAGGGCCACGCTGAG 62.321 63.158 17.28 0.00 45.41 3.35
206 207 3.315142 GATGACAGGGCCACGCTGA 62.315 63.158 17.28 0.00 45.41 4.26
208 209 3.320879 CTGATGACAGGGCCACGCT 62.321 63.158 6.18 0.00 40.14 5.07
209 210 2.821366 CTGATGACAGGGCCACGC 60.821 66.667 6.18 0.00 40.14 5.34
217 218 3.305950 GGCTGCTAGATACCTGATGACAG 60.306 52.174 0.00 0.00 43.12 3.51
218 219 2.630098 GGCTGCTAGATACCTGATGACA 59.370 50.000 0.00 0.00 0.00 3.58
219 220 2.028567 GGGCTGCTAGATACCTGATGAC 60.029 54.545 0.00 0.00 0.00 3.06
220 221 2.251818 GGGCTGCTAGATACCTGATGA 58.748 52.381 0.00 0.00 0.00 2.92
221 222 1.973515 TGGGCTGCTAGATACCTGATG 59.026 52.381 0.00 0.00 0.00 3.07
222 223 2.405618 TGGGCTGCTAGATACCTGAT 57.594 50.000 0.00 0.00 0.00 2.90
223 224 2.174685 TTGGGCTGCTAGATACCTGA 57.825 50.000 0.00 0.00 0.00 3.86
224 225 3.498774 ATTTGGGCTGCTAGATACCTG 57.501 47.619 0.00 0.00 0.00 4.00
225 226 4.907875 TCTAATTTGGGCTGCTAGATACCT 59.092 41.667 0.00 0.00 0.00 3.08
226 227 5.228945 TCTAATTTGGGCTGCTAGATACC 57.771 43.478 0.00 0.00 0.00 2.73
227 228 8.887717 CATAATCTAATTTGGGCTGCTAGATAC 58.112 37.037 0.00 0.00 30.84 2.24
228 229 7.554118 GCATAATCTAATTTGGGCTGCTAGATA 59.446 37.037 0.00 0.00 30.84 1.98
229 230 6.376581 GCATAATCTAATTTGGGCTGCTAGAT 59.623 38.462 0.00 0.31 32.05 1.98
230 231 5.707298 GCATAATCTAATTTGGGCTGCTAGA 59.293 40.000 0.00 0.00 0.00 2.43
231 232 5.391310 CGCATAATCTAATTTGGGCTGCTAG 60.391 44.000 0.00 0.00 0.00 3.42
232 233 4.455533 CGCATAATCTAATTTGGGCTGCTA 59.544 41.667 0.00 0.00 0.00 3.49
233 234 3.254166 CGCATAATCTAATTTGGGCTGCT 59.746 43.478 0.00 0.00 0.00 4.24
234 235 3.004734 ACGCATAATCTAATTTGGGCTGC 59.995 43.478 0.00 0.00 0.00 5.25
235 236 4.275689 TCACGCATAATCTAATTTGGGCTG 59.724 41.667 0.00 0.00 0.00 4.85
236 237 4.460263 TCACGCATAATCTAATTTGGGCT 58.540 39.130 0.00 0.00 0.00 5.19
237 238 4.787598 CTCACGCATAATCTAATTTGGGC 58.212 43.478 0.00 0.00 0.00 5.36
238 239 4.275689 TGCTCACGCATAATCTAATTTGGG 59.724 41.667 0.00 0.00 42.25 4.12
239 240 5.422666 TGCTCACGCATAATCTAATTTGG 57.577 39.130 0.00 0.00 42.25 3.28
252 253 1.675483 AGTTGTTGATTTGCTCACGCA 59.325 42.857 0.00 0.00 46.24 5.24
253 254 2.046313 CAGTTGTTGATTTGCTCACGC 58.954 47.619 0.00 0.00 32.17 5.34
254 255 2.290367 TCCAGTTGTTGATTTGCTCACG 59.710 45.455 0.00 0.00 32.17 4.35
255 256 3.988379 TCCAGTTGTTGATTTGCTCAC 57.012 42.857 0.00 0.00 32.17 3.51
256 257 5.393352 GCATATCCAGTTGTTGATTTGCTCA 60.393 40.000 7.40 0.00 40.52 4.26
257 258 5.039333 GCATATCCAGTTGTTGATTTGCTC 58.961 41.667 7.40 0.00 40.52 4.26
258 259 4.439153 CGCATATCCAGTTGTTGATTTGCT 60.439 41.667 11.28 0.00 41.10 3.91
259 260 3.792956 CGCATATCCAGTTGTTGATTTGC 59.207 43.478 0.00 0.00 40.38 3.68
260 261 4.353737 CCGCATATCCAGTTGTTGATTTG 58.646 43.478 0.00 0.00 0.00 2.32
261 262 3.181487 GCCGCATATCCAGTTGTTGATTT 60.181 43.478 0.00 0.00 0.00 2.17
262 263 2.358898 GCCGCATATCCAGTTGTTGATT 59.641 45.455 0.00 0.00 0.00 2.57
263 264 1.949525 GCCGCATATCCAGTTGTTGAT 59.050 47.619 0.00 0.00 0.00 2.57
264 265 1.065491 AGCCGCATATCCAGTTGTTGA 60.065 47.619 0.00 0.00 0.00 3.18
265 266 1.064505 CAGCCGCATATCCAGTTGTTG 59.935 52.381 0.00 0.00 0.00 3.33
266 267 1.382522 CAGCCGCATATCCAGTTGTT 58.617 50.000 0.00 0.00 0.00 2.83
267 268 0.464373 CCAGCCGCATATCCAGTTGT 60.464 55.000 0.00 0.00 0.00 3.32
268 269 0.179048 TCCAGCCGCATATCCAGTTG 60.179 55.000 0.00 0.00 0.00 3.16
269 270 0.179045 GTCCAGCCGCATATCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
270 271 1.050988 AGTCCAGCCGCATATCCAGT 61.051 55.000 0.00 0.00 0.00 4.00
271 272 0.107456 AAGTCCAGCCGCATATCCAG 59.893 55.000 0.00 0.00 0.00 3.86
272 273 0.546122 AAAGTCCAGCCGCATATCCA 59.454 50.000 0.00 0.00 0.00 3.41
273 274 1.604278 GAAAAGTCCAGCCGCATATCC 59.396 52.381 0.00 0.00 0.00 2.59
274 275 2.288666 TGAAAAGTCCAGCCGCATATC 58.711 47.619 0.00 0.00 0.00 1.63
275 276 2.418368 TGAAAAGTCCAGCCGCATAT 57.582 45.000 0.00 0.00 0.00 1.78
276 277 2.016318 CATGAAAAGTCCAGCCGCATA 58.984 47.619 0.00 0.00 0.00 3.14
277 278 0.813184 CATGAAAAGTCCAGCCGCAT 59.187 50.000 0.00 0.00 0.00 4.73
278 279 0.250684 TCATGAAAAGTCCAGCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
279 280 0.449388 CTCATGAAAAGTCCAGCCGC 59.551 55.000 0.00 0.00 0.00 6.53
280 281 2.099141 TCTCATGAAAAGTCCAGCCG 57.901 50.000 0.00 0.00 0.00 5.52
281 282 3.376546 GTGATCTCATGAAAAGTCCAGCC 59.623 47.826 0.00 0.00 0.00 4.85
282 283 3.376546 GGTGATCTCATGAAAAGTCCAGC 59.623 47.826 0.00 0.00 0.00 4.85
283 284 4.634883 CAGGTGATCTCATGAAAAGTCCAG 59.365 45.833 3.42 0.00 0.00 3.86
284 285 4.582869 CAGGTGATCTCATGAAAAGTCCA 58.417 43.478 3.42 0.00 0.00 4.02
285 286 3.376546 GCAGGTGATCTCATGAAAAGTCC 59.623 47.826 13.19 0.00 0.00 3.85
286 287 4.094590 CAGCAGGTGATCTCATGAAAAGTC 59.905 45.833 13.19 0.00 0.00 3.01
287 288 4.008330 CAGCAGGTGATCTCATGAAAAGT 58.992 43.478 13.19 0.00 0.00 2.66
288 289 4.259356 TCAGCAGGTGATCTCATGAAAAG 58.741 43.478 13.19 0.32 0.00 2.27
289 290 4.290711 TCAGCAGGTGATCTCATGAAAA 57.709 40.909 13.19 0.00 0.00 2.29
290 291 3.986996 TCAGCAGGTGATCTCATGAAA 57.013 42.857 13.19 0.00 0.00 2.69
291 292 3.805207 CATCAGCAGGTGATCTCATGAA 58.195 45.455 12.37 0.00 44.73 2.57
292 293 2.484947 GCATCAGCAGGTGATCTCATGA 60.485 50.000 12.37 0.00 44.73 3.07
293 294 1.874231 GCATCAGCAGGTGATCTCATG 59.126 52.381 12.37 5.11 44.73 3.07
294 295 1.202782 GGCATCAGCAGGTGATCTCAT 60.203 52.381 12.37 0.00 44.73 2.90
295 296 0.179702 GGCATCAGCAGGTGATCTCA 59.820 55.000 12.37 0.00 44.73 3.27
296 297 0.469070 AGGCATCAGCAGGTGATCTC 59.531 55.000 12.37 7.70 44.73 2.75
297 298 1.693062 CTAGGCATCAGCAGGTGATCT 59.307 52.381 12.37 10.09 44.73 2.75
298 299 1.877258 GCTAGGCATCAGCAGGTGATC 60.877 57.143 12.37 7.63 44.73 2.92
300 301 1.266867 TGCTAGGCATCAGCAGGTGA 61.267 55.000 4.40 4.40 43.90 4.02
301 302 1.222661 TGCTAGGCATCAGCAGGTG 59.777 57.895 4.58 0.00 43.90 4.00
302 303 3.731547 TGCTAGGCATCAGCAGGT 58.268 55.556 4.58 0.00 43.90 4.00
307 308 2.971413 GCGGCTGCTAGGCATCAG 60.971 66.667 11.21 0.00 41.44 2.90
308 309 4.552365 GGCGGCTGCTAGGCATCA 62.552 66.667 18.85 0.00 41.44 3.07
309 310 2.383245 TAAGGCGGCTGCTAGGCATC 62.383 60.000 18.85 0.00 41.44 3.91
310 311 1.983119 TTAAGGCGGCTGCTAGGCAT 61.983 55.000 18.85 12.79 41.44 4.40
311 312 2.593468 CTTAAGGCGGCTGCTAGGCA 62.593 60.000 18.85 0.00 41.44 4.75
312 313 1.889573 CTTAAGGCGGCTGCTAGGC 60.890 63.158 18.85 12.49 42.25 3.93
313 314 1.227674 CCTTAAGGCGGCTGCTAGG 60.228 63.158 18.85 15.62 42.25 3.02
314 315 0.750850 TACCTTAAGGCGGCTGCTAG 59.249 55.000 21.92 10.21 42.25 3.42
315 316 1.420430 ATACCTTAAGGCGGCTGCTA 58.580 50.000 21.92 4.84 42.25 3.49
316 317 1.070289 GTATACCTTAAGGCGGCTGCT 59.930 52.381 21.92 0.00 42.25 4.24
317 318 1.202604 TGTATACCTTAAGGCGGCTGC 60.203 52.381 21.92 9.72 39.32 5.25
318 319 2.902705 TGTATACCTTAAGGCGGCTG 57.097 50.000 21.92 1.56 39.32 4.85
319 320 5.757099 ATAATGTATACCTTAAGGCGGCT 57.243 39.130 21.92 5.25 39.32 5.52
320 321 8.502105 AATAATAATGTATACCTTAAGGCGGC 57.498 34.615 21.92 0.00 39.32 6.53
372 373 9.562583 GTAATAATCGTCAAAATACCTGCAAAA 57.437 29.630 0.00 0.00 0.00 2.44
373 374 8.952278 AGTAATAATCGTCAAAATACCTGCAAA 58.048 29.630 0.00 0.00 0.00 3.68
374 375 8.500753 AGTAATAATCGTCAAAATACCTGCAA 57.499 30.769 0.00 0.00 0.00 4.08
375 376 8.500753 AAGTAATAATCGTCAAAATACCTGCA 57.499 30.769 0.00 0.00 0.00 4.41
394 395 9.939424 AGACAAAGGGAGTAGTATCTAAGTAAT 57.061 33.333 0.00 0.00 0.00 1.89
395 396 9.406113 GAGACAAAGGGAGTAGTATCTAAGTAA 57.594 37.037 0.00 0.00 0.00 2.24
396 397 8.554870 TGAGACAAAGGGAGTAGTATCTAAGTA 58.445 37.037 0.00 0.00 0.00 2.24
397 398 7.411808 TGAGACAAAGGGAGTAGTATCTAAGT 58.588 38.462 0.00 0.00 0.00 2.24
398 399 7.883391 TGAGACAAAGGGAGTAGTATCTAAG 57.117 40.000 0.00 0.00 0.00 2.18
399 400 7.839705 ACATGAGACAAAGGGAGTAGTATCTAA 59.160 37.037 0.00 0.00 0.00 2.10
400 401 7.355101 ACATGAGACAAAGGGAGTAGTATCTA 58.645 38.462 0.00 0.00 0.00 1.98
401 402 6.198639 ACATGAGACAAAGGGAGTAGTATCT 58.801 40.000 0.00 0.00 0.00 1.98
402 403 6.472686 ACATGAGACAAAGGGAGTAGTATC 57.527 41.667 0.00 0.00 0.00 2.24
403 404 7.839705 TCTTACATGAGACAAAGGGAGTAGTAT 59.160 37.037 0.00 0.00 0.00 2.12
404 405 7.179966 TCTTACATGAGACAAAGGGAGTAGTA 58.820 38.462 0.00 0.00 0.00 1.82
405 406 6.017192 TCTTACATGAGACAAAGGGAGTAGT 58.983 40.000 0.00 0.00 0.00 2.73
406 407 6.531503 TCTTACATGAGACAAAGGGAGTAG 57.468 41.667 0.00 0.00 0.00 2.57
407 408 7.496346 AATCTTACATGAGACAAAGGGAGTA 57.504 36.000 0.00 0.00 0.00 2.59
408 409 6.380079 AATCTTACATGAGACAAAGGGAGT 57.620 37.500 0.00 0.00 0.00 3.85
409 410 8.970859 AATAATCTTACATGAGACAAAGGGAG 57.029 34.615 0.00 0.00 0.00 4.30
410 411 9.753674 AAAATAATCTTACATGAGACAAAGGGA 57.246 29.630 0.00 0.00 0.00 4.20
437 438 6.701145 TTTGACACTACACTATGCCAAAAA 57.299 33.333 0.00 0.00 0.00 1.94
438 439 6.095580 TGTTTTGACACTACACTATGCCAAAA 59.904 34.615 0.00 0.00 32.16 2.44
439 440 5.590663 TGTTTTGACACTACACTATGCCAAA 59.409 36.000 0.00 0.00 0.00 3.28
440 441 5.126779 TGTTTTGACACTACACTATGCCAA 58.873 37.500 0.00 0.00 0.00 4.52
441 442 4.709250 TGTTTTGACACTACACTATGCCA 58.291 39.130 0.00 0.00 0.00 4.92
442 443 5.682943 TTGTTTTGACACTACACTATGCC 57.317 39.130 0.00 0.00 0.00 4.40
443 444 7.167468 CCTTTTTGTTTTGACACTACACTATGC 59.833 37.037 0.00 0.00 0.00 3.14
444 445 8.188139 ACCTTTTTGTTTTGACACTACACTATG 58.812 33.333 0.00 0.00 0.00 2.23
445 446 8.188139 CACCTTTTTGTTTTGACACTACACTAT 58.812 33.333 0.00 0.00 0.00 2.12
446 447 7.175293 ACACCTTTTTGTTTTGACACTACACTA 59.825 33.333 0.00 0.00 0.00 2.74
447 448 6.015772 ACACCTTTTTGTTTTGACACTACACT 60.016 34.615 0.00 0.00 0.00 3.55
448 449 6.153756 ACACCTTTTTGTTTTGACACTACAC 58.846 36.000 0.00 0.00 0.00 2.90
449 450 6.334102 ACACCTTTTTGTTTTGACACTACA 57.666 33.333 0.00 0.00 0.00 2.74
450 451 8.920509 ATAACACCTTTTTGTTTTGACACTAC 57.079 30.769 0.00 0.00 40.29 2.73
452 453 9.744468 GATATAACACCTTTTTGTTTTGACACT 57.256 29.630 0.00 0.00 40.29 3.55
453 454 9.522804 TGATATAACACCTTTTTGTTTTGACAC 57.477 29.630 0.00 0.00 40.29 3.67
460 461 8.462016 GCTCTCATGATATAACACCTTTTTGTT 58.538 33.333 0.00 0.00 42.46 2.83
461 462 7.611467 TGCTCTCATGATATAACACCTTTTTGT 59.389 33.333 0.00 0.00 0.00 2.83
462 463 7.988737 TGCTCTCATGATATAACACCTTTTTG 58.011 34.615 0.00 0.00 0.00 2.44
463 464 8.049117 TCTGCTCTCATGATATAACACCTTTTT 58.951 33.333 0.00 0.00 0.00 1.94
464 465 7.568349 TCTGCTCTCATGATATAACACCTTTT 58.432 34.615 0.00 0.00 0.00 2.27
465 466 7.129457 TCTGCTCTCATGATATAACACCTTT 57.871 36.000 0.00 0.00 0.00 3.11
466 467 6.737720 TCTGCTCTCATGATATAACACCTT 57.262 37.500 0.00 0.00 0.00 3.50
467 468 6.931790 ATCTGCTCTCATGATATAACACCT 57.068 37.500 0.00 0.00 0.00 4.00
468 469 7.835822 AGTATCTGCTCTCATGATATAACACC 58.164 38.462 0.00 0.00 0.00 4.16
469 470 9.781834 GTAGTATCTGCTCTCATGATATAACAC 57.218 37.037 0.00 0.00 0.00 3.32
470 471 8.961634 GGTAGTATCTGCTCTCATGATATAACA 58.038 37.037 0.00 0.00 0.00 2.41
471 472 8.961634 TGGTAGTATCTGCTCTCATGATATAAC 58.038 37.037 0.00 0.00 0.00 1.89
472 473 8.961634 GTGGTAGTATCTGCTCTCATGATATAA 58.038 37.037 0.00 0.00 0.00 0.98
473 474 8.109634 TGTGGTAGTATCTGCTCTCATGATATA 58.890 37.037 0.00 0.00 0.00 0.86
474 475 6.950619 TGTGGTAGTATCTGCTCTCATGATAT 59.049 38.462 0.00 0.00 0.00 1.63
475 476 6.306987 TGTGGTAGTATCTGCTCTCATGATA 58.693 40.000 0.00 0.00 0.00 2.15
476 477 5.143369 TGTGGTAGTATCTGCTCTCATGAT 58.857 41.667 0.00 0.00 0.00 2.45
477 478 4.536765 TGTGGTAGTATCTGCTCTCATGA 58.463 43.478 0.00 0.00 0.00 3.07
478 479 4.926140 TGTGGTAGTATCTGCTCTCATG 57.074 45.455 0.00 0.00 0.00 3.07
479 480 6.432783 GTCTATGTGGTAGTATCTGCTCTCAT 59.567 42.308 0.00 0.00 0.00 2.90
480 481 5.765677 GTCTATGTGGTAGTATCTGCTCTCA 59.234 44.000 0.00 0.00 0.00 3.27
481 482 5.106869 CGTCTATGTGGTAGTATCTGCTCTC 60.107 48.000 0.00 0.00 0.00 3.20
482 483 4.757657 CGTCTATGTGGTAGTATCTGCTCT 59.242 45.833 0.00 0.00 0.00 4.09
483 484 4.755629 TCGTCTATGTGGTAGTATCTGCTC 59.244 45.833 0.00 0.00 0.00 4.26
484 485 4.715713 TCGTCTATGTGGTAGTATCTGCT 58.284 43.478 0.00 0.00 0.00 4.24
485 486 4.755629 TCTCGTCTATGTGGTAGTATCTGC 59.244 45.833 0.00 0.00 0.00 4.26
486 487 6.651225 TCATCTCGTCTATGTGGTAGTATCTG 59.349 42.308 0.00 0.00 0.00 2.90
487 488 6.770542 TCATCTCGTCTATGTGGTAGTATCT 58.229 40.000 0.00 0.00 0.00 1.98
488 489 7.436430 TTCATCTCGTCTATGTGGTAGTATC 57.564 40.000 0.00 0.00 0.00 2.24
489 490 7.255520 GGTTTCATCTCGTCTATGTGGTAGTAT 60.256 40.741 0.00 0.00 0.00 2.12
490 491 6.039047 GGTTTCATCTCGTCTATGTGGTAGTA 59.961 42.308 0.00 0.00 0.00 1.82
491 492 5.163540 GGTTTCATCTCGTCTATGTGGTAGT 60.164 44.000 0.00 0.00 0.00 2.73
492 493 5.282510 GGTTTCATCTCGTCTATGTGGTAG 58.717 45.833 0.00 0.00 0.00 3.18
493 494 4.098960 GGGTTTCATCTCGTCTATGTGGTA 59.901 45.833 0.00 0.00 0.00 3.25
494 495 3.118738 GGGTTTCATCTCGTCTATGTGGT 60.119 47.826 0.00 0.00 0.00 4.16
495 496 3.133003 AGGGTTTCATCTCGTCTATGTGG 59.867 47.826 0.00 0.00 0.00 4.17
496 497 4.363999 GAGGGTTTCATCTCGTCTATGTG 58.636 47.826 0.00 0.00 0.00 3.21
497 498 3.066900 CGAGGGTTTCATCTCGTCTATGT 59.933 47.826 0.00 0.00 45.27 2.29
498 499 3.633235 CGAGGGTTTCATCTCGTCTATG 58.367 50.000 0.00 0.00 45.27 2.23
499 500 3.992260 CGAGGGTTTCATCTCGTCTAT 57.008 47.619 0.00 0.00 45.27 1.98
505 506 2.101082 GTCCTACCGAGGGTTTCATCTC 59.899 54.545 0.00 0.00 43.94 2.75
506 507 2.108970 GTCCTACCGAGGGTTTCATCT 58.891 52.381 0.00 0.00 43.94 2.90
507 508 2.108970 AGTCCTACCGAGGGTTTCATC 58.891 52.381 0.00 0.00 43.94 2.92
508 509 2.249309 AGTCCTACCGAGGGTTTCAT 57.751 50.000 0.00 0.00 43.94 2.57
509 510 2.450476 GTAGTCCTACCGAGGGTTTCA 58.550 52.381 0.00 0.00 43.94 2.69
510 511 1.403323 CGTAGTCCTACCGAGGGTTTC 59.597 57.143 0.00 0.00 43.94 2.78
511 512 1.467920 CGTAGTCCTACCGAGGGTTT 58.532 55.000 0.00 0.00 43.94 3.27
512 513 1.034292 GCGTAGTCCTACCGAGGGTT 61.034 60.000 0.00 0.00 43.94 4.11
513 514 1.452833 GCGTAGTCCTACCGAGGGT 60.453 63.158 0.00 0.00 43.94 4.34
514 515 0.822532 ATGCGTAGTCCTACCGAGGG 60.823 60.000 0.00 0.00 43.94 4.30
515 516 0.592148 GATGCGTAGTCCTACCGAGG 59.408 60.000 0.00 0.00 45.35 4.63
516 517 0.592148 GGATGCGTAGTCCTACCGAG 59.408 60.000 0.00 0.00 32.61 4.63
517 518 0.820891 GGGATGCGTAGTCCTACCGA 60.821 60.000 0.00 0.00 36.00 4.69
518 519 0.822532 AGGGATGCGTAGTCCTACCG 60.823 60.000 0.00 0.00 36.00 4.02
519 520 1.885233 GTAGGGATGCGTAGTCCTACC 59.115 57.143 18.00 0.00 43.46 3.18
521 522 2.579873 GTGTAGGGATGCGTAGTCCTA 58.420 52.381 1.53 1.53 36.00 2.94
522 523 1.400737 GTGTAGGGATGCGTAGTCCT 58.599 55.000 3.26 3.26 36.00 3.85
523 524 0.388294 GGTGTAGGGATGCGTAGTCC 59.612 60.000 0.00 0.00 34.92 3.85
524 525 1.108776 TGGTGTAGGGATGCGTAGTC 58.891 55.000 0.00 0.00 0.00 2.59
525 526 1.563924 TTGGTGTAGGGATGCGTAGT 58.436 50.000 0.00 0.00 0.00 2.73
526 527 2.277084 GTTTGGTGTAGGGATGCGTAG 58.723 52.381 0.00 0.00 0.00 3.51
527 528 1.624312 TGTTTGGTGTAGGGATGCGTA 59.376 47.619 0.00 0.00 0.00 4.42
528 529 0.398696 TGTTTGGTGTAGGGATGCGT 59.601 50.000 0.00 0.00 0.00 5.24
529 530 1.199097 GTTGTTTGGTGTAGGGATGCG 59.801 52.381 0.00 0.00 0.00 4.73
530 531 2.235016 TGTTGTTTGGTGTAGGGATGC 58.765 47.619 0.00 0.00 0.00 3.91
531 532 3.826157 ACATGTTGTTTGGTGTAGGGATG 59.174 43.478 0.00 0.00 0.00 3.51
532 533 3.826157 CACATGTTGTTTGGTGTAGGGAT 59.174 43.478 0.00 0.00 0.00 3.85
533 534 3.218453 CACATGTTGTTTGGTGTAGGGA 58.782 45.455 0.00 0.00 0.00 4.20
534 535 2.955660 ACACATGTTGTTTGGTGTAGGG 59.044 45.455 0.00 0.00 42.24 3.53
535 536 3.629855 TCACACATGTTGTTTGGTGTAGG 59.370 43.478 10.47 0.00 42.16 3.18
536 537 4.891627 TCACACATGTTGTTTGGTGTAG 57.108 40.909 10.47 0.00 42.16 2.74
537 538 4.439426 GCTTCACACATGTTGTTTGGTGTA 60.439 41.667 10.47 2.39 42.16 2.90
538 539 3.675775 GCTTCACACATGTTGTTTGGTGT 60.676 43.478 10.47 0.00 44.69 4.16
539 540 2.859538 GCTTCACACATGTTGTTTGGTG 59.140 45.455 0.00 0.00 35.67 4.17
540 541 2.479389 CGCTTCACACATGTTGTTTGGT 60.479 45.455 0.00 0.00 35.67 3.67
541 542 2.118683 CGCTTCACACATGTTGTTTGG 58.881 47.619 0.00 0.00 35.67 3.28
542 543 3.038017 CTCGCTTCACACATGTTGTTTG 58.962 45.455 0.00 0.00 35.67 2.93
543 544 2.942376 TCTCGCTTCACACATGTTGTTT 59.058 40.909 0.00 0.00 35.67 2.83
544 545 2.545526 CTCTCGCTTCACACATGTTGTT 59.454 45.455 0.00 0.00 35.67 2.83
545 546 2.138320 CTCTCGCTTCACACATGTTGT 58.862 47.619 0.00 0.00 39.97 3.32
546 547 2.407090 TCTCTCGCTTCACACATGTTG 58.593 47.619 0.00 0.00 0.00 3.33
547 548 2.820059 TCTCTCGCTTCACACATGTT 57.180 45.000 0.00 0.00 0.00 2.71
548 549 2.681706 CTTCTCTCGCTTCACACATGT 58.318 47.619 0.00 0.00 0.00 3.21
549 550 1.392853 GCTTCTCTCGCTTCACACATG 59.607 52.381 0.00 0.00 0.00 3.21
550 551 1.274728 AGCTTCTCTCGCTTCACACAT 59.725 47.619 0.00 0.00 32.98 3.21
551 552 0.676184 AGCTTCTCTCGCTTCACACA 59.324 50.000 0.00 0.00 32.98 3.72
552 553 1.789506 AAGCTTCTCTCGCTTCACAC 58.210 50.000 0.00 0.00 43.79 3.82
558 559 0.036858 GGGTTGAAGCTTCTCTCGCT 60.037 55.000 26.09 0.00 39.94 4.93
559 560 1.355066 CGGGTTGAAGCTTCTCTCGC 61.355 60.000 26.09 20.29 0.00 5.03
560 561 0.737715 CCGGGTTGAAGCTTCTCTCG 60.738 60.000 26.09 25.95 0.00 4.04
561 562 0.608640 TCCGGGTTGAAGCTTCTCTC 59.391 55.000 26.09 17.50 0.00 3.20
562 563 0.610687 CTCCGGGTTGAAGCTTCTCT 59.389 55.000 26.09 0.00 0.00 3.10
563 564 0.321996 ACTCCGGGTTGAAGCTTCTC 59.678 55.000 26.09 18.14 0.00 2.87
564 565 0.321996 GACTCCGGGTTGAAGCTTCT 59.678 55.000 26.09 3.34 0.00 2.85
565 566 0.673956 GGACTCCGGGTTGAAGCTTC 60.674 60.000 19.89 19.89 0.00 3.86
566 567 1.375326 GGACTCCGGGTTGAAGCTT 59.625 57.895 0.00 0.00 0.00 3.74
567 568 1.841556 TGGACTCCGGGTTGAAGCT 60.842 57.895 0.00 0.00 0.00 3.74
568 569 1.671379 GTGGACTCCGGGTTGAAGC 60.671 63.158 0.00 0.00 0.00 3.86
569 570 1.263356 TAGTGGACTCCGGGTTGAAG 58.737 55.000 0.00 0.00 0.00 3.02
570 571 1.719529 TTAGTGGACTCCGGGTTGAA 58.280 50.000 0.00 0.00 0.00 2.69
571 572 1.553248 CATTAGTGGACTCCGGGTTGA 59.447 52.381 0.00 0.00 0.00 3.18
572 573 1.553248 TCATTAGTGGACTCCGGGTTG 59.447 52.381 0.00 0.00 0.00 3.77
573 574 1.946984 TCATTAGTGGACTCCGGGTT 58.053 50.000 0.00 0.00 0.00 4.11
574 575 2.176247 ATCATTAGTGGACTCCGGGT 57.824 50.000 0.00 0.00 0.00 5.28
575 576 4.283467 TGAATATCATTAGTGGACTCCGGG 59.717 45.833 0.00 0.00 0.00 5.73
584 585 8.777413 ACCGTCATGAATTGAATATCATTAGTG 58.223 33.333 0.00 0.00 35.70 2.74
592 593 7.121168 ACAGTTTGACCGTCATGAATTGAATAT 59.879 33.333 12.78 0.00 35.70 1.28
606 607 3.754323 TCAAGAAACAACAGTTTGACCGT 59.246 39.130 0.00 0.00 35.71 4.83
645 646 3.556775 GGTTAACTGTAACGAGTTGCACA 59.443 43.478 5.42 0.00 40.57 4.57
648 649 4.799419 TTGGTTAACTGTAACGAGTTGC 57.201 40.909 5.42 0.00 40.57 4.17
649 650 6.592798 TCTTTGGTTAACTGTAACGAGTTG 57.407 37.500 5.42 0.00 40.57 3.16
650 651 7.797038 ATTCTTTGGTTAACTGTAACGAGTT 57.203 32.000 5.42 0.00 40.57 3.01
651 652 7.797038 AATTCTTTGGTTAACTGTAACGAGT 57.203 32.000 5.42 0.00 40.57 4.18
652 653 7.529519 CGAAATTCTTTGGTTAACTGTAACGAG 59.470 37.037 5.42 0.00 40.57 4.18
653 654 7.011295 ACGAAATTCTTTGGTTAACTGTAACGA 59.989 33.333 5.42 0.16 40.57 3.85
654 655 7.127686 ACGAAATTCTTTGGTTAACTGTAACG 58.872 34.615 5.42 0.00 40.57 3.18
655 656 7.319615 CGACGAAATTCTTTGGTTAACTGTAAC 59.680 37.037 5.42 0.00 39.18 2.50
656 657 7.224362 TCGACGAAATTCTTTGGTTAACTGTAA 59.776 33.333 5.42 0.00 31.50 2.41
657 658 6.700960 TCGACGAAATTCTTTGGTTAACTGTA 59.299 34.615 5.42 0.00 31.50 2.74
658 659 5.524646 TCGACGAAATTCTTTGGTTAACTGT 59.475 36.000 5.42 0.00 31.50 3.55
659 660 5.981174 TCGACGAAATTCTTTGGTTAACTG 58.019 37.500 5.42 0.00 31.50 3.16
660 661 6.259387 AGTTCGACGAAATTCTTTGGTTAACT 59.741 34.615 12.67 0.00 35.33 2.24
661 662 6.424683 AGTTCGACGAAATTCTTTGGTTAAC 58.575 36.000 12.67 0.00 31.50 2.01
662 663 6.607735 AGTTCGACGAAATTCTTTGGTTAA 57.392 33.333 12.67 0.00 31.50 2.01
663 664 6.258287 TCAAGTTCGACGAAATTCTTTGGTTA 59.742 34.615 19.32 0.00 31.50 2.85
664 665 5.065474 TCAAGTTCGACGAAATTCTTTGGTT 59.935 36.000 19.32 0.00 31.50 3.67
665 666 4.573201 TCAAGTTCGACGAAATTCTTTGGT 59.427 37.500 19.32 0.00 34.15 3.67
666 667 5.090652 TCAAGTTCGACGAAATTCTTTGG 57.909 39.130 19.32 9.10 27.08 3.28
667 668 5.501319 CGATCAAGTTCGACGAAATTCTTTG 59.499 40.000 19.32 10.21 41.62 2.77
668 669 5.389516 CCGATCAAGTTCGACGAAATTCTTT 60.390 40.000 19.32 8.07 41.62 2.52
669 670 4.091509 CCGATCAAGTTCGACGAAATTCTT 59.908 41.667 19.32 12.31 41.62 2.52
670 671 3.612860 CCGATCAAGTTCGACGAAATTCT 59.387 43.478 19.32 10.56 41.62 2.40
708 724 3.243704 TGGTGGTTTGTTTCTATTGCTGC 60.244 43.478 0.00 0.00 0.00 5.25
710 726 4.039124 CCTTGGTGGTTTGTTTCTATTGCT 59.961 41.667 0.00 0.00 0.00 3.91
726 742 0.471617 CTAGATCCCAGCCCTTGGTG 59.528 60.000 0.00 0.00 46.25 4.17
729 745 1.348008 TGCCTAGATCCCAGCCCTTG 61.348 60.000 0.00 0.00 0.00 3.61
773 789 2.743928 CTCGGCAGTGAGTTGGGC 60.744 66.667 0.00 0.00 0.00 5.36
818 834 5.635700 TGATTTGATTTGTGTACGTGATCGA 59.364 36.000 0.00 0.00 40.62 3.59
1057 1079 0.757188 ATGACCTCGGAGTAGCCCAG 60.757 60.000 4.02 0.00 0.00 4.45
1308 1330 0.863538 CTTCAGCGACATCGTCCTCG 60.864 60.000 2.85 0.00 42.22 4.63
1352 1380 3.334583 TGATGTTGCTGTTAGAGGACC 57.665 47.619 0.00 0.00 0.00 4.46
1364 1392 2.975851 CTGAAACGCTTCTTGATGTTGC 59.024 45.455 0.00 0.00 32.33 4.17
1370 1398 1.202639 TCTGCCTGAAACGCTTCTTGA 60.203 47.619 0.00 0.00 32.33 3.02
1605 1633 4.697756 CGCTTGGACGGCTTCCCA 62.698 66.667 7.65 0.00 45.17 4.37
1606 1634 4.388499 TCGCTTGGACGGCTTCCC 62.388 66.667 7.65 0.00 45.17 3.97
1770 1798 1.179152 TCTTGACGCCGTGGAAGATA 58.821 50.000 0.00 0.00 0.00 1.98
1794 1822 0.741221 ATTCCTGCTCTTCGGCGTTC 60.741 55.000 6.85 0.00 34.52 3.95
1869 1897 0.250038 TATAGTAGTCGCCGGCGTCT 60.250 55.000 41.31 41.31 40.45 4.18
1921 1949 0.618458 AACCGCTTAGCCTGATCCAA 59.382 50.000 0.00 0.00 0.00 3.53
1991 2019 1.997928 GAAATTGCTCCTCCTGCCGC 61.998 60.000 0.00 0.00 0.00 6.53
1997 2025 2.093447 TCCGAGAAGAAATTGCTCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
2062 2090 1.420138 ACCGTCACCTGATCCAAAGTT 59.580 47.619 0.00 0.00 0.00 2.66
2109 2137 1.802337 CGACCACGTCTTCCAGGACA 61.802 60.000 0.00 0.00 36.12 4.02
2113 2141 0.314302 AAGTCGACCACGTCTTCCAG 59.686 55.000 13.01 0.00 42.04 3.86
2274 2302 0.677731 TTTCGATGGCCTTGAGCAGG 60.678 55.000 3.32 0.00 46.50 4.85
2292 2320 3.679917 CGATGATCAGCACCTGGTACTTT 60.680 47.826 12.15 0.00 31.51 2.66
2526 2554 3.427638 CGTCCGTCATGTACTTGATCACT 60.428 47.826 13.92 0.00 0.00 3.41
2934 2962 2.094286 CGTCCTCATCTTCTGCTTCAGT 60.094 50.000 0.00 0.00 32.61 3.41
2973 3001 2.729479 CGGGCAGATCACCAGCTCT 61.729 63.158 7.07 0.00 0.00 4.09
3186 3214 3.001514 GCCTTGGAGATGGGCTCA 58.998 61.111 0.00 0.00 45.81 4.26
3303 3331 1.152819 CTGGATCTCCGGGACCGTA 60.153 63.158 10.17 0.00 38.76 4.02
3382 3410 0.250513 GGGTCCATGAAGTCGAAGCT 59.749 55.000 0.00 0.00 0.00 3.74
3540 3568 2.277120 CCGTACTTCTCCGACGCG 60.277 66.667 3.53 3.53 35.28 6.01
3722 3750 1.722677 GACGAGTAGCCCGACTCTG 59.277 63.158 8.81 5.75 43.18 3.35
3723 3751 1.814586 CGACGAGTAGCCCGACTCT 60.815 63.158 8.81 0.00 43.18 3.24
4193 4221 7.651027 ATTCCAGGATTTCTAGGTTGAAATG 57.349 36.000 7.13 0.00 43.97 2.32
4247 4275 9.929180 GCTGGAATTTTTAGGAGTTAAAATCTT 57.071 29.630 0.00 0.00 40.08 2.40
4249 4277 9.140286 GTGCTGGAATTTTTAGGAGTTAAAATC 57.860 33.333 0.00 0.00 40.08 2.17
4250 4278 8.646900 TGTGCTGGAATTTTTAGGAGTTAAAAT 58.353 29.630 0.00 0.00 40.08 1.82
4251 4279 8.012957 TGTGCTGGAATTTTTAGGAGTTAAAA 57.987 30.769 0.00 0.00 38.99 1.52
4253 4281 7.775053 ATGTGCTGGAATTTTTAGGAGTTAA 57.225 32.000 0.00 0.00 0.00 2.01
4254 4282 7.669722 AGAATGTGCTGGAATTTTTAGGAGTTA 59.330 33.333 0.00 0.00 0.00 2.24
4255 4283 6.494835 AGAATGTGCTGGAATTTTTAGGAGTT 59.505 34.615 0.00 0.00 0.00 3.01
4256 4284 6.012745 AGAATGTGCTGGAATTTTTAGGAGT 58.987 36.000 0.00 0.00 0.00 3.85
4257 4285 6.376581 AGAGAATGTGCTGGAATTTTTAGGAG 59.623 38.462 0.00 0.00 0.00 3.69
4259 4287 6.405176 GGAGAGAATGTGCTGGAATTTTTAGG 60.405 42.308 0.00 0.00 0.00 2.69
4260 4288 6.151648 TGGAGAGAATGTGCTGGAATTTTTAG 59.848 38.462 0.00 0.00 0.00 1.85
4267 4303 3.726557 AATGGAGAGAATGTGCTGGAA 57.273 42.857 0.00 0.00 0.00 3.53
4273 4309 9.565213 GAGTTAATTTGAAATGGAGAGAATGTG 57.435 33.333 0.00 0.00 0.00 3.21
4333 4388 2.241176 TGGGACAGCGGGAATAGAATTT 59.759 45.455 0.00 0.00 0.00 1.82
4336 4391 3.000002 TGGGACAGCGGGAATAGAA 58.000 52.632 0.00 0.00 0.00 2.10
4374 4429 1.272490 CTCCGTCACATACACTGGTGT 59.728 52.381 11.20 11.20 46.87 4.16
4375 4430 1.404181 CCTCCGTCACATACACTGGTG 60.404 57.143 0.00 0.00 36.36 4.17
4376 4431 0.895530 CCTCCGTCACATACACTGGT 59.104 55.000 0.00 0.00 0.00 4.00
4377 4432 0.175760 CCCTCCGTCACATACACTGG 59.824 60.000 0.00 0.00 0.00 4.00
4378 4433 1.135139 CTCCCTCCGTCACATACACTG 59.865 57.143 0.00 0.00 0.00 3.66
4379 4434 1.272536 ACTCCCTCCGTCACATACACT 60.273 52.381 0.00 0.00 0.00 3.55
4380 4435 1.183549 ACTCCCTCCGTCACATACAC 58.816 55.000 0.00 0.00 0.00 2.90
4381 4436 2.651455 CTACTCCCTCCGTCACATACA 58.349 52.381 0.00 0.00 0.00 2.29
4382 4437 1.337387 GCTACTCCCTCCGTCACATAC 59.663 57.143 0.00 0.00 0.00 2.39
4383 4438 1.064240 TGCTACTCCCTCCGTCACATA 60.064 52.381 0.00 0.00 0.00 2.29
4384 4439 0.324368 TGCTACTCCCTCCGTCACAT 60.324 55.000 0.00 0.00 0.00 3.21
4385 4440 0.324368 ATGCTACTCCCTCCGTCACA 60.324 55.000 0.00 0.00 0.00 3.58
4386 4441 0.386113 GATGCTACTCCCTCCGTCAC 59.614 60.000 0.00 0.00 0.00 3.67
4387 4442 0.259065 AGATGCTACTCCCTCCGTCA 59.741 55.000 0.00 0.00 0.00 4.35
4388 4443 1.881324 GTAGATGCTACTCCCTCCGTC 59.119 57.143 0.00 0.00 0.00 4.79
4389 4444 1.214673 TGTAGATGCTACTCCCTCCGT 59.785 52.381 6.21 0.00 0.00 4.69
4390 4445 1.883275 CTGTAGATGCTACTCCCTCCG 59.117 57.143 6.21 0.00 0.00 4.63
4391 4446 1.616374 GCTGTAGATGCTACTCCCTCC 59.384 57.143 6.21 0.00 0.00 4.30
4392 4447 2.311463 TGCTGTAGATGCTACTCCCTC 58.689 52.381 6.21 0.00 0.00 4.30
4393 4448 2.432510 GTTGCTGTAGATGCTACTCCCT 59.567 50.000 6.21 0.00 34.37 4.20
4394 4449 2.168521 TGTTGCTGTAGATGCTACTCCC 59.831 50.000 6.21 0.00 37.15 4.30
4395 4450 3.526931 TGTTGCTGTAGATGCTACTCC 57.473 47.619 6.21 0.00 37.15 3.85
4396 4451 7.439356 TCATATTTGTTGCTGTAGATGCTACTC 59.561 37.037 6.21 0.03 37.15 2.59
4397 4452 7.275183 TCATATTTGTTGCTGTAGATGCTACT 58.725 34.615 6.21 0.00 37.15 2.57
4398 4453 7.482654 TCATATTTGTTGCTGTAGATGCTAC 57.517 36.000 0.00 0.00 36.87 3.58
4399 4454 8.504812 TTTCATATTTGTTGCTGTAGATGCTA 57.495 30.769 0.00 0.00 0.00 3.49
4400 4455 7.395190 TTTCATATTTGTTGCTGTAGATGCT 57.605 32.000 0.00 0.00 0.00 3.79
4401 4456 8.638685 ATTTTCATATTTGTTGCTGTAGATGC 57.361 30.769 0.00 0.00 0.00 3.91
4446 4501 9.658799 AATATAGCAACATCTGTACACCATATC 57.341 33.333 0.00 0.00 0.00 1.63
4449 4504 8.752005 AAAATATAGCAACATCTGTACACCAT 57.248 30.769 0.00 0.00 0.00 3.55
4484 4540 8.198109 TCCTGCTAGTAAGTTTGATCAACTATC 58.802 37.037 7.89 3.26 45.77 2.08
4502 4562 5.120363 GGAAGTTTTAGTTTCGTCCTGCTAG 59.880 44.000 0.00 0.00 0.00 3.42
4506 4569 4.131596 TGGGAAGTTTTAGTTTCGTCCTG 58.868 43.478 0.00 0.00 32.12 3.86
4644 4710 2.313317 CCATGGCATGTAGGAATTGCT 58.687 47.619 24.80 4.41 36.62 3.91
5041 5113 0.754217 CCAATGGCATCTGGGTCAGG 60.754 60.000 16.32 1.13 31.51 3.86
5042 5114 0.033796 ACCAATGGCATCTGGGTCAG 60.034 55.000 23.45 7.18 37.00 3.51
5067 5139 1.458486 CCAGCCTACCAACAACCCA 59.542 57.895 0.00 0.00 0.00 4.51
5094 5166 2.223971 CCAGCAATCAGGCCATCAAATC 60.224 50.000 5.01 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.