Multiple sequence alignment - TraesCS1B01G254500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G254500 chr1B 100.000 4593 0 0 1 4593 448739185 448743777 0.000000e+00 8482
1 TraesCS1B01G254500 chr1A 91.147 1909 113 28 2275 4143 431015076 431016968 0.000000e+00 2538
2 TraesCS1B01G254500 chr1A 88.186 1786 131 39 449 2177 431013261 431015023 0.000000e+00 2056
3 TraesCS1B01G254500 chr1A 90.385 468 18 10 4143 4593 431017012 431017469 1.420000e-164 590
4 TraesCS1B01G254500 chr1A 85.867 467 46 8 2 448 431012744 431013210 3.210000e-131 479
5 TraesCS1B01G254500 chr1A 84.615 468 51 5 1 448 548587112 548586646 3.260000e-121 446
6 TraesCS1B01G254500 chr1A 86.928 153 12 4 449 597 548586595 548586447 1.020000e-36 165
7 TraesCS1B01G254500 chr1D 91.877 1822 110 11 2275 4084 333220247 333222042 0.000000e+00 2510
8 TraesCS1B01G254500 chr1D 89.261 1611 111 32 604 2170 333218594 333220186 0.000000e+00 1960
9 TraesCS1B01G254500 chr1D 85.507 207 15 6 4143 4346 333222177 333222371 7.790000e-48 202
10 TraesCS1B01G254500 chr1D 79.630 270 33 18 4336 4593 333223997 333224256 1.700000e-39 174
11 TraesCS1B01G254500 chr2B 82.479 468 50 5 1 448 54273927 54273472 9.320000e-102 381
12 TraesCS1B01G254500 chr2B 87.097 155 11 5 449 599 54273421 54273272 2.840000e-37 167
13 TraesCS1B01G254500 chr2B 94.937 79 4 0 2208 2286 601177779 601177857 1.740000e-24 124
14 TraesCS1B01G254500 chr2B 88.172 93 7 4 449 537 161212863 161212955 1.750000e-19 108
15 TraesCS1B01G254500 chr5A 80.769 260 49 1 186 444 638411562 638411821 7.790000e-48 202
16 TraesCS1B01G254500 chr5A 84.516 155 17 5 448 599 638411875 638412025 3.700000e-31 147
17 TraesCS1B01G254500 chr5A 94.737 76 4 0 2208 2283 9649896 9649821 8.070000e-23 119
18 TraesCS1B01G254500 chr5A 91.566 83 5 2 2208 2288 299272967 299272885 3.760000e-21 113
19 TraesCS1B01G254500 chr5A 90.588 85 7 1 2208 2291 40763246 40763162 1.350000e-20 111
20 TraesCS1B01G254500 chr4A 85.806 155 14 4 449 599 603970592 603970742 1.710000e-34 158
21 TraesCS1B01G254500 chr4A 92.683 82 5 1 2208 2288 606352425 606352506 2.900000e-22 117
22 TraesCS1B01G254500 chr2A 84.314 153 17 6 449 598 606118235 606118087 4.790000e-30 143
23 TraesCS1B01G254500 chr2A 93.506 77 5 0 2208 2284 256792726 256792650 1.040000e-21 115
24 TraesCS1B01G254500 chr7B 90.385 104 6 4 449 548 715281258 715281155 2.880000e-27 134
25 TraesCS1B01G254500 chr7A 82.911 158 18 5 449 601 652192306 652192459 2.880000e-27 134
26 TraesCS1B01G254500 chr6D 98.571 70 1 0 2208 2277 230814423 230814354 1.740000e-24 124
27 TraesCS1B01G254500 chr3D 94.667 75 4 0 2208 2282 695372 695446 2.900000e-22 117
28 TraesCS1B01G254500 chr2D 93.590 78 4 1 2208 2284 326217543 326217466 1.040000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G254500 chr1B 448739185 448743777 4592 False 8482.00 8482 100.00000 1 4593 1 chr1B.!!$F1 4592
1 TraesCS1B01G254500 chr1A 431012744 431017469 4725 False 1415.75 2538 88.89625 2 4593 4 chr1A.!!$F1 4591
2 TraesCS1B01G254500 chr1A 548586447 548587112 665 True 305.50 446 85.77150 1 597 2 chr1A.!!$R1 596
3 TraesCS1B01G254500 chr1D 333218594 333224256 5662 False 1211.50 2510 86.56875 604 4593 4 chr1D.!!$F1 3989
4 TraesCS1B01G254500 chr2B 54273272 54273927 655 True 274.00 381 84.78800 1 599 2 chr2B.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 328 0.235665 GATTGACATACATGCGCCGG 59.764 55.0 4.18 0.0 0.0 6.13 F
1458 1588 0.039618 TCCGTACCTCCCTTTACCGT 59.960 55.0 0.00 0.0 0.0 4.83 F
2905 3072 0.178964 CCCTCAAACTCCCAAAGGCA 60.179 55.0 0.00 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2115 0.250234 ACACCATCCGTCCAGTCATG 59.750 55.000 0.00 0.0 0.00 3.07 R
3112 3279 0.767375 AAGCCAAGAGAGCCACTTGA 59.233 50.000 14.01 0.0 44.92 3.02 R
3724 3901 1.540363 GCACTCGGAACTGAAGAACCA 60.540 52.381 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.127708 AGGCCTCGGTGGAATTTCTAT 58.872 47.619 0.00 0.00 38.35 1.98
49 50 8.443953 AAAGCTACATGAGGATGATTTTAGAC 57.556 34.615 0.00 0.00 33.36 2.59
56 57 2.431057 AGGATGATTTTAGACGCTCGGT 59.569 45.455 0.00 0.00 0.00 4.69
67 68 0.319297 ACGCTCGGTAGTTCACAACC 60.319 55.000 0.00 0.00 0.00 3.77
118 119 5.012148 AGTCCAAGATATATGGGAAAGACCG 59.988 44.000 0.00 0.00 38.54 4.79
155 176 5.011738 TCTCCCACCTCCGAATAATATGTTC 59.988 44.000 0.00 0.00 0.00 3.18
165 186 5.107453 CCGAATAATATGTTCGCCTTGTCTC 60.107 44.000 14.68 0.00 45.13 3.36
170 191 3.791973 ATGTTCGCCTTGTCTCTAGAG 57.208 47.619 13.98 13.98 0.00 2.43
173 194 0.331954 TCGCCTTGTCTCTAGAGGGT 59.668 55.000 19.67 0.00 0.00 4.34
221 243 1.459539 GGTGGGGATGATCCTCCGA 60.460 63.158 9.26 0.00 35.67 4.55
232 254 5.362143 GGATGATCCTCCGAAGATATGATGA 59.638 44.000 3.71 0.00 32.53 2.92
237 259 3.504134 CCTCCGAAGATATGATGACTCGT 59.496 47.826 0.00 0.00 0.00 4.18
256 278 2.286418 CGTTCATCTTTGCGGCTTATCC 60.286 50.000 0.00 0.00 0.00 2.59
304 326 2.487934 AGAGATTGACATACATGCGCC 58.512 47.619 4.18 0.00 0.00 6.53
306 328 0.235665 GATTGACATACATGCGCCGG 59.764 55.000 4.18 0.00 0.00 6.13
328 350 1.111116 ATTGGCATGGCGCTTGCTAT 61.111 50.000 26.73 19.61 40.91 2.97
332 354 0.236711 GCATGGCGCTTGCTATACAG 59.763 55.000 22.79 1.40 37.77 2.74
466 538 1.202794 TCAGTGTTGCAGATTGCCTGA 60.203 47.619 0.00 1.70 45.78 3.86
540 616 2.439507 TGTATTGAGGATCTCTTGCCCC 59.560 50.000 0.00 0.00 34.92 5.80
551 627 2.107950 TCTTGCCCCAAGATTGTACG 57.892 50.000 3.69 0.00 44.27 3.67
552 628 1.349688 TCTTGCCCCAAGATTGTACGT 59.650 47.619 3.69 0.00 44.27 3.57
553 629 2.568062 TCTTGCCCCAAGATTGTACGTA 59.432 45.455 3.69 0.00 44.27 3.57
563 639 5.274718 CAAGATTGTACGTAGCTCTACCAG 58.725 45.833 0.00 0.00 32.61 4.00
588 664 5.934935 TGGAGTAAAACCGTTTTGATCTC 57.065 39.130 17.73 18.52 34.19 2.75
620 696 6.917217 AAGTCTAATCTAATGAAGCTGCAC 57.083 37.500 0.00 0.00 0.00 4.57
624 700 8.206867 AGTCTAATCTAATGAAGCTGCACATTA 58.793 33.333 21.47 21.47 37.75 1.90
629 705 9.525409 AATCTAATGAAGCTGCACATTATTTTC 57.475 29.630 22.36 9.01 37.99 2.29
681 760 2.264480 CCGACATCCTGGAACGCA 59.736 61.111 0.00 0.00 0.00 5.24
711 790 0.452987 ATGCACACATGGACGATTGC 59.547 50.000 0.00 0.00 34.35 3.56
795 880 1.701292 CATCCCCCTGCATCATCACTA 59.299 52.381 0.00 0.00 0.00 2.74
798 883 1.492176 CCCCCTGCATCATCACTACTT 59.508 52.381 0.00 0.00 0.00 2.24
862 947 0.388907 CCCGGTGGTAGTGTACAACG 60.389 60.000 0.00 0.00 46.61 4.10
945 1030 2.125912 CACAGAAGGTCCGGCGAG 60.126 66.667 9.30 0.00 0.00 5.03
991 1079 2.420568 CGTCGGATTTCGGGGAGGA 61.421 63.158 0.00 0.00 39.77 3.71
992 1080 1.442148 GTCGGATTTCGGGGAGGAG 59.558 63.158 0.00 0.00 39.77 3.69
993 1081 1.760875 TCGGATTTCGGGGAGGAGG 60.761 63.158 0.00 0.00 39.77 4.30
1149 1237 2.124570 CTCAAGGACGCCATGGGG 60.125 66.667 26.22 26.22 37.18 4.96
1305 1402 1.387492 GCCCCCTCCCTCCCTTTAT 60.387 63.158 0.00 0.00 0.00 1.40
1389 1518 3.576861 TCCTCATCGTGATTCCATACCT 58.423 45.455 0.00 0.00 0.00 3.08
1395 1525 2.434336 TCGTGATTCCATACCTCCCTTG 59.566 50.000 0.00 0.00 0.00 3.61
1432 1562 0.605319 GTGGAATGCTCGGAACCACA 60.605 55.000 0.00 0.00 46.75 4.17
1458 1588 0.039618 TCCGTACCTCCCTTTACCGT 59.960 55.000 0.00 0.00 0.00 4.83
1483 1613 1.065491 CCTGGAATGATCGGAACCACA 60.065 52.381 0.00 0.00 0.00 4.17
1503 1633 2.407696 CACTCGCGATGCAGAATCATAG 59.592 50.000 10.36 0.00 34.68 2.23
1507 1637 3.055591 CGCGATGCAGAATCATAGTTCT 58.944 45.455 0.00 0.00 38.95 3.01
1508 1638 3.492383 CGCGATGCAGAATCATAGTTCTT 59.508 43.478 0.00 0.00 36.33 2.52
1509 1639 4.607778 CGCGATGCAGAATCATAGTTCTTG 60.608 45.833 0.00 0.00 36.33 3.02
1510 1640 4.319333 GCGATGCAGAATCATAGTTCTTGG 60.319 45.833 0.00 0.00 36.33 3.61
1521 1651 7.872113 ATCATAGTTCTTGGGAGATTTTCAC 57.128 36.000 0.00 0.00 0.00 3.18
1525 1655 3.721087 TCTTGGGAGATTTTCACCCTC 57.279 47.619 10.72 0.00 46.03 4.30
1546 1676 1.174078 CCTGCACTGTCCATGTTGCA 61.174 55.000 0.00 0.00 0.00 4.08
1561 1691 2.069465 TTGCACGCACAATTTCGCCT 62.069 50.000 0.00 0.00 0.00 5.52
1562 1692 1.371635 GCACGCACAATTTCGCCTT 60.372 52.632 0.00 0.00 0.00 4.35
1563 1693 0.939106 GCACGCACAATTTCGCCTTT 60.939 50.000 0.00 0.00 0.00 3.11
1564 1694 1.486439 CACGCACAATTTCGCCTTTT 58.514 45.000 0.00 0.00 0.00 2.27
1590 1720 3.749609 TCACTGCACTTGATCACTGATTG 59.250 43.478 0.00 0.00 0.00 2.67
1624 1754 4.287067 AGGAATTCTGAGCAGTGTAGGAAA 59.713 41.667 5.23 0.00 0.00 3.13
1638 1768 5.361285 AGTGTAGGAAAGTGCAGTAGGATAG 59.639 44.000 0.00 0.00 0.00 2.08
1696 1837 1.191535 ATGGTAACCACGCTAGAGCA 58.808 50.000 1.89 0.00 37.39 4.26
1703 1844 1.148157 CCACGCTAGAGCATTCCACG 61.148 60.000 1.89 0.00 42.21 4.94
1788 1929 6.744537 GCTGCAAAGAATATACTTGAACACAG 59.255 38.462 0.00 0.00 0.00 3.66
1802 1943 6.480320 ACTTGAACACAGTTGTACTCTTGATC 59.520 38.462 0.00 0.00 33.55 2.92
1806 1947 8.147704 TGAACACAGTTGTACTCTTGATCATTA 58.852 33.333 0.00 0.00 33.55 1.90
1807 1948 9.155975 GAACACAGTTGTACTCTTGATCATTAT 57.844 33.333 0.00 0.00 33.55 1.28
1809 1950 7.489435 ACACAGTTGTACTCTTGATCATTATCG 59.511 37.037 0.00 0.00 32.10 2.92
1813 1954 5.289595 TGTACTCTTGATCATTATCGTGCC 58.710 41.667 0.00 0.00 34.60 5.01
1820 1961 5.895636 TGATCATTATCGTGCCTTTTGTT 57.104 34.783 0.00 0.00 34.60 2.83
1824 1965 5.465935 TCATTATCGTGCCTTTTGTTTTCC 58.534 37.500 0.00 0.00 0.00 3.13
1834 1975 4.267690 GCCTTTTGTTTTCCTTCACTTTCG 59.732 41.667 0.00 0.00 0.00 3.46
1845 1986 3.304726 CCTTCACTTTCGCTTTCCCTTTC 60.305 47.826 0.00 0.00 0.00 2.62
1881 2023 7.356680 TCTGATTACCATCATTCCCATCTTTT 58.643 34.615 0.00 0.00 38.81 2.27
1888 2030 2.034124 CATTCCCATCTTTTGGCGGAT 58.966 47.619 0.00 0.00 44.97 4.18
1903 2045 0.657840 CGGATTAGCCTTTTGGAGCG 59.342 55.000 0.00 0.00 44.07 5.03
1912 2054 1.152860 TTTTGGAGCGGCAACCAGA 60.153 52.632 15.92 10.91 37.48 3.86
1914 2056 4.704833 TGGAGCGGCAACCAGAGC 62.705 66.667 13.35 0.00 0.00 4.09
1920 2062 2.743752 CGGCAACCAGAGCGTCATG 61.744 63.158 0.00 0.00 0.00 3.07
1921 2063 2.482374 GCAACCAGAGCGTCATGC 59.518 61.111 0.00 0.00 46.98 4.06
1937 2079 4.867047 CGTCATGCTGACTATTTTCTCAGT 59.133 41.667 12.45 0.00 44.85 3.41
1945 2087 6.257630 GCTGACTATTTTCTCAGTCTTGGATC 59.742 42.308 3.65 0.00 41.46 3.36
1947 2089 7.551585 TGACTATTTTCTCAGTCTTGGATCTC 58.448 38.462 3.65 0.00 41.46 2.75
1965 2107 3.605664 GCCCTTGCCGTGCACTTT 61.606 61.111 16.19 0.00 38.71 2.66
1966 2108 2.265182 GCCCTTGCCGTGCACTTTA 61.265 57.895 16.19 0.00 38.71 1.85
1967 2109 1.801309 GCCCTTGCCGTGCACTTTAA 61.801 55.000 16.19 5.86 38.71 1.52
1968 2110 0.671251 CCCTTGCCGTGCACTTTAAA 59.329 50.000 16.19 3.29 38.71 1.52
1969 2111 1.335872 CCCTTGCCGTGCACTTTAAAG 60.336 52.381 16.19 13.76 38.71 1.85
1970 2112 1.336755 CCTTGCCGTGCACTTTAAAGT 59.663 47.619 15.22 15.22 38.71 2.66
1997 2148 3.127533 GGACGGATGGTGTGCTGC 61.128 66.667 0.00 0.00 0.00 5.25
2003 2154 1.696063 GGATGGTGTGCTGCCATATT 58.304 50.000 0.00 0.00 45.87 1.28
2028 2179 6.265196 TCCAGCATCACAAAACTTAAGATTGT 59.735 34.615 18.98 18.98 37.76 2.71
2034 2185 8.517878 CATCACAAAACTTAAGATTGTCCATCT 58.482 33.333 20.73 8.00 45.03 2.90
2073 2224 6.371548 TGAAGTCTTAATCTGTGCAATACCAC 59.628 38.462 0.00 0.00 36.28 4.16
2078 2229 6.491745 TCTTAATCTGTGCAATACCACCAAAA 59.508 34.615 0.00 0.00 34.85 2.44
2082 2233 5.295950 TCTGTGCAATACCACCAAAATTTG 58.704 37.500 0.00 0.00 34.85 2.32
2092 2243 5.783111 ACCACCAAAATTTGATTGACTAGC 58.217 37.500 7.37 0.00 0.00 3.42
2100 2251 8.644619 CAAAATTTGATTGACTAGCATCACTTG 58.355 33.333 0.00 0.00 0.00 3.16
2112 2263 4.922206 AGCATCACTTGGGTCTTTGATTA 58.078 39.130 0.00 0.00 0.00 1.75
2115 2266 5.357878 GCATCACTTGGGTCTTTGATTATCA 59.642 40.000 0.00 0.00 0.00 2.15
2150 2302 8.687292 TGCATCATTAGAAATTAGCTCAATCT 57.313 30.769 0.00 0.00 0.00 2.40
2151 2303 8.565416 TGCATCATTAGAAATTAGCTCAATCTG 58.435 33.333 0.00 0.00 0.00 2.90
2155 2307 8.896744 TCATTAGAAATTAGCTCAATCTGTTGG 58.103 33.333 0.00 0.00 35.99 3.77
2158 2310 6.479884 AGAAATTAGCTCAATCTGTTGGTCT 58.520 36.000 0.00 0.00 35.99 3.85
2160 2312 2.376808 AGCTCAATCTGTTGGTCTCG 57.623 50.000 0.00 0.00 35.99 4.04
2170 2322 3.133362 TCTGTTGGTCTCGTTGGTTTAGT 59.867 43.478 0.00 0.00 0.00 2.24
2171 2323 4.341806 TCTGTTGGTCTCGTTGGTTTAGTA 59.658 41.667 0.00 0.00 0.00 1.82
2173 2325 4.810491 TGTTGGTCTCGTTGGTTTAGTAAC 59.190 41.667 0.00 0.00 0.00 2.50
2202 2354 5.424121 AAAAATACAGTGCGGCAGATATC 57.576 39.130 1.18 0.00 0.00 1.63
2203 2355 2.751166 ATACAGTGCGGCAGATATCC 57.249 50.000 1.18 0.00 0.00 2.59
2204 2356 1.408969 TACAGTGCGGCAGATATCCA 58.591 50.000 1.18 0.00 0.00 3.41
2205 2357 0.541392 ACAGTGCGGCAGATATCCAA 59.459 50.000 1.18 0.00 0.00 3.53
2206 2358 1.224075 CAGTGCGGCAGATATCCAAG 58.776 55.000 1.18 0.00 0.00 3.61
2207 2359 1.123077 AGTGCGGCAGATATCCAAGA 58.877 50.000 1.18 0.00 0.00 3.02
2208 2360 1.069823 AGTGCGGCAGATATCCAAGAG 59.930 52.381 1.18 0.00 0.00 2.85
2209 2361 1.069204 GTGCGGCAGATATCCAAGAGA 59.931 52.381 1.18 0.00 0.00 3.10
2210 2362 1.069204 TGCGGCAGATATCCAAGAGAC 59.931 52.381 0.00 0.00 0.00 3.36
2211 2363 1.069204 GCGGCAGATATCCAAGAGACA 59.931 52.381 0.00 0.00 0.00 3.41
2212 2364 2.483714 GCGGCAGATATCCAAGAGACAA 60.484 50.000 0.00 0.00 0.00 3.18
2213 2365 3.805108 GCGGCAGATATCCAAGAGACAAT 60.805 47.826 0.00 0.00 0.00 2.71
2217 2369 4.024218 GCAGATATCCAAGAGACAATGTGC 60.024 45.833 0.00 0.00 35.00 4.57
2218 2370 5.121105 CAGATATCCAAGAGACAATGTGCA 58.879 41.667 0.00 0.00 0.00 4.57
2219 2371 5.587443 CAGATATCCAAGAGACAATGTGCAA 59.413 40.000 0.00 0.00 0.00 4.08
2221 2373 6.660521 AGATATCCAAGAGACAATGTGCAAAA 59.339 34.615 0.00 0.00 0.00 2.44
2222 2374 4.305989 TCCAAGAGACAATGTGCAAAAC 57.694 40.909 0.00 0.00 0.00 2.43
2224 2376 4.046462 CCAAGAGACAATGTGCAAAACAG 58.954 43.478 0.00 0.00 43.64 3.16
2225 2377 3.360249 AGAGACAATGTGCAAAACAGC 57.640 42.857 0.00 0.00 43.64 4.40
2226 2378 2.035066 AGAGACAATGTGCAAAACAGCC 59.965 45.455 0.00 0.00 43.64 4.85
2228 2380 0.829333 ACAATGTGCAAAACAGCCCA 59.171 45.000 0.00 0.00 43.64 5.36
2229 2381 1.417145 ACAATGTGCAAAACAGCCCAT 59.583 42.857 0.00 0.00 43.64 4.00
2230 2382 2.158784 ACAATGTGCAAAACAGCCCATT 60.159 40.909 0.00 0.00 43.64 3.16
2231 2383 2.879646 CAATGTGCAAAACAGCCCATTT 59.120 40.909 0.00 0.00 43.64 2.32
2232 2384 2.706339 TGTGCAAAACAGCCCATTTT 57.294 40.000 0.00 0.00 33.78 1.82
2233 2385 2.286872 TGTGCAAAACAGCCCATTTTG 58.713 42.857 11.43 11.43 45.68 2.44
2234 2386 2.093288 TGTGCAAAACAGCCCATTTTGA 60.093 40.909 17.34 4.68 45.75 2.69
2235 2387 2.545106 GTGCAAAACAGCCCATTTTGAG 59.455 45.455 17.34 0.00 45.75 3.02
2236 2388 2.170187 TGCAAAACAGCCCATTTTGAGT 59.830 40.909 17.34 0.00 45.75 3.41
2237 2389 3.205338 GCAAAACAGCCCATTTTGAGTT 58.795 40.909 17.34 0.00 45.75 3.01
2238 2390 3.002553 GCAAAACAGCCCATTTTGAGTTG 59.997 43.478 17.34 4.12 45.75 3.16
2239 2391 4.190772 CAAAACAGCCCATTTTGAGTTGT 58.809 39.130 10.61 0.00 45.75 3.32
2240 2392 3.733443 AACAGCCCATTTTGAGTTGTC 57.267 42.857 0.00 0.00 0.00 3.18
2241 2393 2.949447 ACAGCCCATTTTGAGTTGTCT 58.051 42.857 0.00 0.00 0.00 3.41
2242 2394 2.624838 ACAGCCCATTTTGAGTTGTCTG 59.375 45.455 0.00 0.00 0.00 3.51
2243 2395 2.029649 CAGCCCATTTTGAGTTGTCTGG 60.030 50.000 0.00 0.00 0.00 3.86
2244 2396 2.158475 AGCCCATTTTGAGTTGTCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
2245 2397 2.627699 GCCCATTTTGAGTTGTCTGGAA 59.372 45.455 0.00 0.00 0.00 3.53
2246 2398 3.552890 GCCCATTTTGAGTTGTCTGGAAC 60.553 47.826 0.00 0.00 0.00 3.62
2247 2399 3.304659 CCCATTTTGAGTTGTCTGGAACG 60.305 47.826 0.00 0.00 0.00 3.95
2248 2400 3.563808 CCATTTTGAGTTGTCTGGAACGA 59.436 43.478 0.00 0.00 0.00 3.85
2249 2401 4.527564 CATTTTGAGTTGTCTGGAACGAC 58.472 43.478 0.00 0.00 41.93 4.34
2257 2409 5.473796 GTTGTCTGGAACGACTTACAAAA 57.526 39.130 0.00 0.00 38.97 2.44
2258 2410 5.499047 GTTGTCTGGAACGACTTACAAAAG 58.501 41.667 0.00 0.00 38.97 2.27
2260 2412 4.569162 TGTCTGGAACGACTTACAAAAGTG 59.431 41.667 0.00 0.00 46.09 3.16
2261 2413 4.807304 GTCTGGAACGACTTACAAAAGTGA 59.193 41.667 0.00 0.00 46.09 3.41
2262 2414 5.292589 GTCTGGAACGACTTACAAAAGTGAA 59.707 40.000 0.00 0.00 46.09 3.18
2263 2415 5.292589 TCTGGAACGACTTACAAAAGTGAAC 59.707 40.000 0.00 0.00 46.09 3.18
2264 2416 4.033129 TGGAACGACTTACAAAAGTGAACG 59.967 41.667 0.00 0.00 46.09 3.95
2265 2417 4.511734 GAACGACTTACAAAAGTGAACGG 58.488 43.478 0.00 0.00 46.09 4.44
2266 2418 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
2267 2419 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
2268 2420 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
2269 2421 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
2270 2422 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
2271 2423 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
2273 2425 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
2276 2428 3.446442 AAGTGAACGGAGGGAGTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
2280 2432 4.776308 AGTGAACGGAGGGAGTAGTATTTT 59.224 41.667 0.00 0.00 0.00 1.82
2283 2435 5.246656 TGAACGGAGGGAGTAGTATTTTTCA 59.753 40.000 0.00 0.00 0.00 2.69
2285 2437 5.485620 ACGGAGGGAGTAGTATTTTTCAAC 58.514 41.667 0.00 0.00 0.00 3.18
2288 2440 6.424032 GGAGGGAGTAGTATTTTTCAACCAT 58.576 40.000 0.00 0.00 0.00 3.55
2314 2466 9.970395 TTTCATGAATGGATTGACATAAATAGC 57.030 29.630 9.40 0.00 0.00 2.97
2331 2486 1.154225 GCGCACCAAGTGATTTCGG 60.154 57.895 0.30 0.00 35.23 4.30
2338 2493 2.094675 CCAAGTGATTTCGGGCTTGAT 58.905 47.619 0.00 0.00 40.30 2.57
2339 2494 2.159338 CCAAGTGATTTCGGGCTTGATG 60.159 50.000 0.00 0.00 40.30 3.07
2351 2506 0.686789 GCTTGATGGGCCAAAGGTTT 59.313 50.000 11.89 0.00 0.00 3.27
2352 2507 1.899142 GCTTGATGGGCCAAAGGTTTA 59.101 47.619 11.89 0.00 0.00 2.01
2354 2509 3.055167 GCTTGATGGGCCAAAGGTTTAAT 60.055 43.478 11.89 0.00 0.00 1.40
2360 2515 2.635427 GGGCCAAAGGTTTAATGTCCAA 59.365 45.455 4.39 0.00 0.00 3.53
2367 2522 7.653311 GCCAAAGGTTTAATGTCCAATGATATC 59.347 37.037 0.00 0.00 0.00 1.63
2372 2527 9.125026 AGGTTTAATGTCCAATGATATCTTGTC 57.875 33.333 3.98 3.41 0.00 3.18
2373 2528 8.070171 GGTTTAATGTCCAATGATATCTTGTCG 58.930 37.037 3.98 0.00 0.00 4.35
2406 2563 4.201990 GCACAATCAGATGCCTAAGGAAAG 60.202 45.833 0.00 0.00 35.73 2.62
2410 2567 7.284034 CACAATCAGATGCCTAAGGAAAGTTAT 59.716 37.037 0.00 0.00 0.00 1.89
2436 2593 7.747888 TGTAATTTACTCAATGACAATCACCG 58.252 34.615 7.99 0.00 33.70 4.94
2437 2594 6.817765 AATTTACTCAATGACAATCACCGT 57.182 33.333 0.00 0.00 0.00 4.83
2438 2595 7.915293 AATTTACTCAATGACAATCACCGTA 57.085 32.000 0.00 0.00 0.00 4.02
2439 2596 8.506168 AATTTACTCAATGACAATCACCGTAT 57.494 30.769 0.00 0.00 0.00 3.06
2442 2599 8.642908 TTACTCAATGACAATCACCGTATAAG 57.357 34.615 0.00 0.00 0.00 1.73
2443 2600 6.873997 ACTCAATGACAATCACCGTATAAGA 58.126 36.000 0.00 0.00 0.00 2.10
2444 2601 6.757010 ACTCAATGACAATCACCGTATAAGAC 59.243 38.462 0.00 0.00 0.00 3.01
2445 2602 6.635755 TCAATGACAATCACCGTATAAGACA 58.364 36.000 0.00 0.00 0.00 3.41
2466 2623 5.316167 ACACCATAACTGATGCTTCTGAAA 58.684 37.500 12.54 1.90 33.79 2.69
2471 2628 6.405508 CCATAACTGATGCTTCTGAAAATGCT 60.406 38.462 12.54 0.00 33.79 3.79
2472 2629 5.464030 AACTGATGCTTCTGAAAATGCTT 57.536 34.783 12.54 0.00 0.00 3.91
2476 2633 6.881065 ACTGATGCTTCTGAAAATGCTTACTA 59.119 34.615 12.54 0.00 0.00 1.82
2488 2645 6.668541 AAATGCTTACTATGTGCTACACTG 57.331 37.500 0.00 0.00 35.11 3.66
2489 2646 4.801330 TGCTTACTATGTGCTACACTGT 57.199 40.909 0.00 0.00 35.11 3.55
2491 2653 5.891451 TGCTTACTATGTGCTACACTGTAG 58.109 41.667 11.37 11.37 35.11 2.74
2494 2656 6.238676 GCTTACTATGTGCTACACTGTAGCTA 60.239 42.308 31.76 23.69 40.95 3.32
2503 2665 5.422331 TGCTACACTGTAGCTATTTCTCCTT 59.578 40.000 31.76 0.00 40.95 3.36
2505 2667 6.919115 GCTACACTGTAGCTATTTCTCCTTAC 59.081 42.308 27.31 0.72 37.56 2.34
2506 2668 5.892568 ACACTGTAGCTATTTCTCCTTACG 58.107 41.667 0.00 0.00 0.00 3.18
2517 2679 6.963083 ATTTCTCCTTACGTAGCTGACTAT 57.037 37.500 0.00 0.00 0.00 2.12
2518 2680 9.217278 CTATTTCTCCTTACGTAGCTGACTATA 57.783 37.037 0.00 0.00 0.00 1.31
2522 2689 8.461249 TCTCCTTACGTAGCTGACTATAATTT 57.539 34.615 0.00 0.00 0.00 1.82
2524 2691 8.867112 TCCTTACGTAGCTGACTATAATTTTG 57.133 34.615 0.00 0.00 0.00 2.44
2530 2697 9.245962 ACGTAGCTGACTATAATTTTGACATAC 57.754 33.333 0.00 0.00 0.00 2.39
2578 2745 0.675083 TGCAGGCAGTTTCATGGTTG 59.325 50.000 0.00 0.00 0.00 3.77
2668 2835 1.265095 GCATCCATATGTGAGGTTGCG 59.735 52.381 1.24 0.00 39.84 4.85
2707 2874 2.985847 GCCGGGAAGCAAGCAACT 60.986 61.111 2.18 0.00 0.00 3.16
2758 2925 2.295909 TGCTTGTATGTTTGGTGCTTCC 59.704 45.455 0.00 0.00 0.00 3.46
2806 2973 1.939255 GGCATTGCTCTCAGCTACTTC 59.061 52.381 8.82 0.00 42.97 3.01
2840 3007 6.150976 ACTCATGTTCCTATTTTTCGCAATCA 59.849 34.615 0.00 0.00 0.00 2.57
2884 3051 2.672098 ACTGTGGCTATACCTGAGAGG 58.328 52.381 0.00 0.00 42.49 3.69
2905 3072 0.178964 CCCTCAAACTCCCAAAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
2907 3074 1.615392 CCTCAAACTCCCAAAGGCAAG 59.385 52.381 0.00 0.00 0.00 4.01
2920 3087 5.531287 CCCAAAGGCAAGTACTAATACATCC 59.469 44.000 0.00 0.00 33.30 3.51
2926 3093 5.634020 GGCAAGTACTAATACATCCGTGATC 59.366 44.000 0.00 0.00 33.30 2.92
2929 3096 7.649057 CAAGTACTAATACATCCGTGATCTCA 58.351 38.462 0.00 0.00 33.30 3.27
2961 3128 1.670811 ACAAACCAAAGAGCTGTCGTG 59.329 47.619 0.00 0.00 0.00 4.35
2962 3129 1.670811 CAAACCAAAGAGCTGTCGTGT 59.329 47.619 0.00 0.00 0.00 4.49
3010 3177 7.629157 TCTGGTCAATCATATGGTTTTCAGTA 58.371 34.615 16.12 6.65 0.00 2.74
3013 3180 8.274322 TGGTCAATCATATGGTTTTCAGTATCT 58.726 33.333 0.00 0.00 0.00 1.98
3028 3195 4.592778 TCAGTATCTTATGCTGCCATACCA 59.407 41.667 0.00 0.00 41.93 3.25
3112 3279 4.216708 TCGGTTTATCCAAGGTTTTTGGT 58.783 39.130 5.89 0.00 40.40 3.67
3208 3375 1.944892 GCTCTGCAGTTCATCACAGCT 60.945 52.381 14.67 0.00 38.71 4.24
3211 3378 1.878088 CTGCAGTTCATCACAGCTGTT 59.122 47.619 18.94 0.00 38.71 3.16
3226 3393 5.049198 CACAGCTGTTGTAATGTTGTCAGAT 60.049 40.000 18.94 0.00 38.16 2.90
3238 3405 9.677567 GTAATGTTGTCAGATGTGTTATTTGTT 57.322 29.630 0.00 0.00 0.00 2.83
3253 3420 8.038944 GTGTTATTTGTTCAGGGAGTATACAGA 58.961 37.037 5.50 0.00 0.00 3.41
3349 3516 4.631813 GTGCTACCCTTCAGTGTTCTTATG 59.368 45.833 0.00 0.00 0.00 1.90
3539 3706 1.314534 ATGCACAATGCTGCCGCTAA 61.315 50.000 0.70 0.00 45.31 3.09
3667 3844 1.673920 GAACTTTTGTCGGTGCCTGAA 59.326 47.619 0.00 0.00 0.00 3.02
3724 3901 3.072476 TGAAACAACCCGAGAGAGGATTT 59.928 43.478 0.00 0.00 0.00 2.17
3749 3926 0.319900 TTCAGTTCCGAGTGCTCTGC 60.320 55.000 0.00 0.00 0.00 4.26
3769 3946 1.657822 GGCCTTTCAGGAATCGTCTC 58.342 55.000 0.00 0.00 37.67 3.36
3811 3988 5.217978 ACATGTGTGCCATCATTCTTTTT 57.782 34.783 0.00 0.00 0.00 1.94
3858 4035 3.887916 TGGGGGTGTAAGTAGCTTTTT 57.112 42.857 0.00 0.00 0.00 1.94
3925 4104 6.113411 GTGTAACTAGTTGAACCCTGCATAT 58.887 40.000 18.56 0.00 0.00 1.78
3926 4105 6.598064 GTGTAACTAGTTGAACCCTGCATATT 59.402 38.462 18.56 0.00 0.00 1.28
3927 4106 6.597672 TGTAACTAGTTGAACCCTGCATATTG 59.402 38.462 18.56 0.00 0.00 1.90
3978 4162 2.985809 TGCCAAATCGCATTTCTTTTCG 59.014 40.909 0.00 0.00 32.62 3.46
4006 4190 5.029807 TGTGTGTGGAAAAGTCTATGTCA 57.970 39.130 0.00 0.00 0.00 3.58
4010 4194 7.068103 TGTGTGTGGAAAAGTCTATGTCAAATT 59.932 33.333 0.00 0.00 0.00 1.82
4011 4195 7.379529 GTGTGTGGAAAAGTCTATGTCAAATTG 59.620 37.037 0.00 0.00 0.00 2.32
4012 4196 7.068103 TGTGTGGAAAAGTCTATGTCAAATTGT 59.932 33.333 0.00 0.00 0.00 2.71
4013 4197 7.591426 GTGTGGAAAAGTCTATGTCAAATTGTC 59.409 37.037 0.00 0.00 0.00 3.18
4014 4198 7.084486 GTGGAAAAGTCTATGTCAAATTGTCC 58.916 38.462 0.00 0.00 0.00 4.02
4015 4199 6.775142 TGGAAAAGTCTATGTCAAATTGTCCA 59.225 34.615 0.00 0.00 0.00 4.02
4018 4202 8.408043 AAAAGTCTATGTCAAATTGTCCATGA 57.592 30.769 0.00 4.82 0.00 3.07
4084 4268 6.599244 TGACTAATTCAGCAATTTAGGTGAGG 59.401 38.462 0.00 0.00 45.54 3.86
4085 4269 6.485171 ACTAATTCAGCAATTTAGGTGAGGT 58.515 36.000 0.00 0.00 45.54 3.85
4087 4271 3.350219 TCAGCAATTTAGGTGAGGTCC 57.650 47.619 0.00 0.00 40.73 4.46
4090 4274 2.912956 AGCAATTTAGGTGAGGTCCAGA 59.087 45.455 0.00 0.00 0.00 3.86
4093 4277 4.651778 CAATTTAGGTGAGGTCCAGACAA 58.348 43.478 0.00 0.00 0.00 3.18
4096 4280 1.807814 AGGTGAGGTCCAGACAAACT 58.192 50.000 0.00 0.00 0.00 2.66
4097 4281 1.694696 AGGTGAGGTCCAGACAAACTC 59.305 52.381 0.00 0.00 0.00 3.01
4098 4282 1.270893 GGTGAGGTCCAGACAAACTCC 60.271 57.143 0.00 0.00 0.00 3.85
4100 4284 1.694150 TGAGGTCCAGACAAACTCCTG 59.306 52.381 0.00 0.00 0.00 3.86
4105 4289 2.938956 CCAGACAAACTCCTGGTTCT 57.061 50.000 0.00 0.00 43.71 3.01
4113 4330 3.870633 AACTCCTGGTTCTGATACGAC 57.129 47.619 0.00 0.00 31.69 4.34
4131 4348 8.188799 TGATACGACTTTGGTTAGTAGAATCTG 58.811 37.037 0.00 0.00 0.00 2.90
4132 4349 6.342338 ACGACTTTGGTTAGTAGAATCTGT 57.658 37.500 0.00 0.00 0.00 3.41
4134 4351 7.311408 ACGACTTTGGTTAGTAGAATCTGTAC 58.689 38.462 0.00 0.00 0.00 2.90
4135 4352 7.040201 ACGACTTTGGTTAGTAGAATCTGTACA 60.040 37.037 0.00 0.00 0.00 2.90
4154 4414 8.811994 TCTGTACATATTTACTATGCAGCCATA 58.188 33.333 0.00 0.00 40.88 2.74
4327 4598 8.593945 ACACACATAAATTGTCAATAGGGAAT 57.406 30.769 0.00 0.00 36.00 3.01
4363 6270 1.440145 GAGGCTAATGGTGCGGCTTC 61.440 60.000 0.00 0.00 33.37 3.86
4434 6341 5.057149 CCTCCCTCCGTTTCATATTAGTTG 58.943 45.833 0.00 0.00 0.00 3.16
4435 6342 5.396436 CCTCCCTCCGTTTCATATTAGTTGT 60.396 44.000 0.00 0.00 0.00 3.32
4436 6343 6.183360 CCTCCCTCCGTTTCATATTAGTTGTA 60.183 42.308 0.00 0.00 0.00 2.41
4437 6344 6.812998 TCCCTCCGTTTCATATTAGTTGTAG 58.187 40.000 0.00 0.00 0.00 2.74
4438 6345 5.465724 CCCTCCGTTTCATATTAGTTGTAGC 59.534 44.000 0.00 0.00 0.00 3.58
4439 6346 6.281405 CCTCCGTTTCATATTAGTTGTAGCT 58.719 40.000 0.00 0.00 0.00 3.32
4440 6347 6.201044 CCTCCGTTTCATATTAGTTGTAGCTG 59.799 42.308 0.00 0.00 0.00 4.24
4441 6348 6.869695 TCCGTTTCATATTAGTTGTAGCTGA 58.130 36.000 0.00 0.00 0.00 4.26
4442 6349 7.324935 TCCGTTTCATATTAGTTGTAGCTGAA 58.675 34.615 0.00 0.00 0.00 3.02
4443 6350 7.820386 TCCGTTTCATATTAGTTGTAGCTGAAA 59.180 33.333 0.00 0.00 0.00 2.69
4444 6351 8.612619 CCGTTTCATATTAGTTGTAGCTGAAAT 58.387 33.333 0.00 0.00 34.71 2.17
4445 6352 9.638300 CGTTTCATATTAGTTGTAGCTGAAATC 57.362 33.333 0.00 0.00 34.71 2.17
4548 6477 3.664025 GCAAATCTTGTGTGTAAACGCTC 59.336 43.478 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.368989 AGCTTTATAGAAATTCCACCGAGG 58.631 41.667 0.00 0.00 39.47 4.63
12 13 8.713971 TCCTCATGTAGCTTTATAGAAATTCCA 58.286 33.333 0.00 0.00 0.00 3.53
23 24 9.547753 GTCTAAAATCATCCTCATGTAGCTTTA 57.452 33.333 0.00 0.00 0.00 1.85
49 50 2.442084 GGTTGTGAACTACCGAGCG 58.558 57.895 0.00 0.00 32.55 5.03
56 57 4.345859 ACATTTCTCCGGTTGTGAACTA 57.654 40.909 0.00 0.00 0.00 2.24
67 68 4.846779 TTTTCCCTTCAACATTTCTCCG 57.153 40.909 0.00 0.00 0.00 4.63
104 105 1.485066 ACGCTTCGGTCTTTCCCATAT 59.515 47.619 0.00 0.00 0.00 1.78
118 119 1.464997 GTGGGAGAACAATGACGCTTC 59.535 52.381 0.00 0.00 0.00 3.86
155 176 1.187087 AACCCTCTAGAGACAAGGCG 58.813 55.000 21.76 2.17 0.00 5.52
165 186 4.097418 TCCTCCAGAAAGAAACCCTCTAG 58.903 47.826 0.00 0.00 32.46 2.43
170 191 1.985895 TCCTCCTCCAGAAAGAAACCC 59.014 52.381 0.00 0.00 0.00 4.11
173 194 2.025887 GCCATCCTCCTCCAGAAAGAAA 60.026 50.000 0.00 0.00 0.00 2.52
232 254 0.320771 AGCCGCAAAGATGAACGAGT 60.321 50.000 0.00 0.00 0.00 4.18
237 259 2.997980 TGGATAAGCCGCAAAGATGAA 58.002 42.857 0.00 0.00 40.66 2.57
272 294 4.610333 TGTCAATCTCTAGGGCTTCACTA 58.390 43.478 0.00 0.00 0.00 2.74
281 303 3.677121 GCGCATGTATGTCAATCTCTAGG 59.323 47.826 0.30 0.00 0.00 3.02
304 326 4.557605 GCGCCATGCCAATCACCG 62.558 66.667 0.00 0.00 37.76 4.94
328 350 1.409064 CCGGAAGCTCTGTATGCTGTA 59.591 52.381 0.00 0.00 41.03 2.74
332 354 0.108138 ACACCGGAAGCTCTGTATGC 60.108 55.000 9.46 0.00 0.00 3.14
408 430 6.570692 CCACTAACTGATAATACACCGAACT 58.429 40.000 0.00 0.00 0.00 3.01
420 442 6.542370 GCCTTAATTTCAGCCACTAACTGATA 59.458 38.462 0.00 0.00 43.40 2.15
421 443 5.358160 GCCTTAATTTCAGCCACTAACTGAT 59.642 40.000 0.00 0.00 43.40 2.90
466 538 2.359531 GCTCAGAGCGACTATACCTTGT 59.640 50.000 6.67 0.00 0.00 3.16
510 582 2.244487 CCTCAATACATGGGGCCCT 58.756 57.895 25.93 5.99 44.61 5.19
540 616 5.244785 TGGTAGAGCTACGTACAATCTTG 57.755 43.478 0.00 0.00 36.94 3.02
550 626 1.883275 CTCCATCCTGGTAGAGCTACG 59.117 57.143 1.90 0.00 39.03 3.51
551 627 2.952116 ACTCCATCCTGGTAGAGCTAC 58.048 52.381 9.31 0.00 39.03 3.58
552 628 4.808767 TTACTCCATCCTGGTAGAGCTA 57.191 45.455 9.31 0.00 39.03 3.32
553 629 3.689872 TTACTCCATCCTGGTAGAGCT 57.310 47.619 9.31 0.00 39.03 4.09
563 639 5.414765 AGATCAAAACGGTTTTACTCCATCC 59.585 40.000 17.67 3.47 0.00 3.51
570 646 7.667984 TTTTTCGAGATCAAAACGGTTTTAC 57.332 32.000 17.67 12.19 0.00 2.01
608 684 6.927416 TCTGAAAATAATGTGCAGCTTCATT 58.073 32.000 16.40 16.40 37.85 2.57
617 693 5.122239 GGGCCTTTTTCTGAAAATAATGTGC 59.878 40.000 15.63 11.45 34.45 4.57
620 696 4.869861 CCGGGCCTTTTTCTGAAAATAATG 59.130 41.667 15.63 6.71 34.45 1.90
624 700 2.562738 CTCCGGGCCTTTTTCTGAAAAT 59.437 45.455 15.63 0.00 34.45 1.82
629 705 4.002797 CCTCCGGGCCTTTTTCTG 57.997 61.111 0.84 0.00 0.00 3.02
681 760 0.178967 TGTGTGCATGGTGGGTCATT 60.179 50.000 0.00 0.00 0.00 2.57
750 830 0.944386 CACCAGAAGAACCAACACGG 59.056 55.000 0.00 0.00 42.50 4.94
766 846 3.672503 AGGGGGATGGTTGGCACC 61.673 66.667 0.00 0.00 44.56 5.01
778 858 1.135094 AGTAGTGATGATGCAGGGGG 58.865 55.000 0.00 0.00 0.00 5.40
795 880 3.754850 GGTGTTATTTGGCCGAACTAAGT 59.245 43.478 7.84 0.00 0.00 2.24
798 883 2.040012 TGGGTGTTATTTGGCCGAACTA 59.960 45.455 7.84 0.00 0.00 2.24
862 947 3.426568 GCTCGTGGTGGCTCTTGC 61.427 66.667 0.00 0.00 38.76 4.01
956 1041 3.600843 GGTACGGAGTCTCGGCTT 58.399 61.111 7.30 0.00 43.93 4.35
991 1079 1.695597 CCTTCTCCATGGCCTCCCT 60.696 63.158 6.96 0.00 0.00 4.20
992 1080 1.694169 TCCTTCTCCATGGCCTCCC 60.694 63.158 6.96 0.00 0.00 4.30
993 1081 1.835693 CTCCTTCTCCATGGCCTCC 59.164 63.158 6.96 0.00 0.00 4.30
1055 1143 4.457496 CGATCACCCACCGCTGCT 62.457 66.667 0.00 0.00 0.00 4.24
1305 1402 0.462937 CAATGCGATAACGTGGGGGA 60.463 55.000 0.00 0.00 41.98 4.81
1395 1525 5.971895 TCCACGTTATTATCCGTTAAAGC 57.028 39.130 0.00 0.00 34.59 3.51
1432 1562 0.258194 AGGGAGGTACGGAATCGAGT 59.742 55.000 0.00 0.00 40.11 4.18
1458 1588 4.263550 TGGTTCCGATCATTCCAGGTTAAA 60.264 41.667 0.00 0.00 0.00 1.52
1483 1613 2.035193 ACTATGATTCTGCATCGCGAGT 59.965 45.455 16.66 0.00 34.08 4.18
1510 1640 1.064389 CAGGGGAGGGTGAAAATCTCC 60.064 57.143 0.00 0.00 44.64 3.71
1521 1651 3.721706 GGACAGTGCAGGGGAGGG 61.722 72.222 0.00 0.00 0.00 4.30
1525 1655 1.075482 AACATGGACAGTGCAGGGG 59.925 57.895 11.66 0.97 0.00 4.79
1546 1676 2.217429 AAAAAGGCGAAATTGTGCGT 57.783 40.000 0.00 0.00 0.00 5.24
1564 1694 4.639755 TCAGTGATCAAGTGCAGTGAAAAA 59.360 37.500 0.00 0.00 40.44 1.94
1590 1720 2.681848 TCAGAATTCCTACGACTCGTCC 59.318 50.000 7.52 0.00 41.54 4.79
1624 1754 7.483580 AAAGAGTAAACTATCCTACTGCACT 57.516 36.000 0.00 0.00 0.00 4.40
1638 1768 3.879932 AGACAGCGCAAAAGAGTAAAC 57.120 42.857 11.47 0.00 0.00 2.01
1680 1818 2.202566 GGAATGCTCTAGCGTGGTTAC 58.797 52.381 0.00 0.00 45.83 2.50
1696 1837 1.535462 CGCAAGAAAGGAACGTGGAAT 59.465 47.619 0.00 0.00 43.02 3.01
1703 1844 0.663153 ACAGCACGCAAGAAAGGAAC 59.337 50.000 0.00 0.00 43.62 3.62
1788 1929 6.292381 GGCACGATAATGATCAAGAGTACAAC 60.292 42.308 0.00 0.00 31.78 3.32
1793 1934 4.679373 AGGCACGATAATGATCAAGAGT 57.321 40.909 0.00 0.00 31.78 3.24
1802 1943 5.469479 AGGAAAACAAAAGGCACGATAATG 58.531 37.500 0.00 0.00 0.00 1.90
1806 1947 3.383185 TGAAGGAAAACAAAAGGCACGAT 59.617 39.130 0.00 0.00 0.00 3.73
1807 1948 2.755655 TGAAGGAAAACAAAAGGCACGA 59.244 40.909 0.00 0.00 0.00 4.35
1809 1950 4.123497 AGTGAAGGAAAACAAAAGGCAC 57.877 40.909 0.00 0.00 0.00 5.01
1813 1954 5.102313 AGCGAAAGTGAAGGAAAACAAAAG 58.898 37.500 0.00 0.00 0.00 2.27
1820 1961 2.621526 GGGAAAGCGAAAGTGAAGGAAA 59.378 45.455 0.00 0.00 0.00 3.13
1824 1965 3.304726 GGAAAGGGAAAGCGAAAGTGAAG 60.305 47.826 0.00 0.00 0.00 3.02
1854 1995 7.100068 AGATGGGAATGATGGTAATCAGAAT 57.900 36.000 0.00 0.00 45.88 2.40
1888 2030 3.996614 GCCGCTCCAAAAGGCTAA 58.003 55.556 0.00 0.00 46.83 3.09
1903 2045 3.044059 GCATGACGCTCTGGTTGCC 62.044 63.158 0.00 0.00 37.77 4.52
1920 2062 5.482908 TCCAAGACTGAGAAAATAGTCAGC 58.517 41.667 7.09 0.00 44.41 4.26
1921 2063 7.555087 AGATCCAAGACTGAGAAAATAGTCAG 58.445 38.462 7.09 0.00 44.41 3.51
1924 2066 6.568869 CGAGATCCAAGACTGAGAAAATAGT 58.431 40.000 0.00 0.00 0.00 2.12
1925 2067 5.461737 GCGAGATCCAAGACTGAGAAAATAG 59.538 44.000 0.00 0.00 0.00 1.73
1927 2069 4.187694 GCGAGATCCAAGACTGAGAAAAT 58.812 43.478 0.00 0.00 0.00 1.82
1937 2079 1.221840 GCAAGGGCGAGATCCAAGA 59.778 57.895 0.00 0.00 0.00 3.02
1963 2105 4.062293 CCGTCCAGTCATGACACTTTAAA 58.938 43.478 27.02 3.14 32.91 1.52
1964 2106 3.322541 TCCGTCCAGTCATGACACTTTAA 59.677 43.478 27.02 4.80 32.91 1.52
1965 2107 2.894765 TCCGTCCAGTCATGACACTTTA 59.105 45.455 27.02 5.55 32.91 1.85
1966 2108 1.691976 TCCGTCCAGTCATGACACTTT 59.308 47.619 27.02 3.94 32.91 2.66
1967 2109 1.338107 TCCGTCCAGTCATGACACTT 58.662 50.000 27.02 4.33 32.91 3.16
1968 2110 1.205655 CATCCGTCCAGTCATGACACT 59.794 52.381 27.02 5.13 32.91 3.55
1969 2111 1.645034 CATCCGTCCAGTCATGACAC 58.355 55.000 27.02 15.52 32.91 3.67
1970 2112 0.536724 CCATCCGTCCAGTCATGACA 59.463 55.000 27.02 4.33 32.91 3.58
1971 2113 0.537188 ACCATCCGTCCAGTCATGAC 59.463 55.000 18.47 18.47 0.00 3.06
1972 2114 0.536724 CACCATCCGTCCAGTCATGA 59.463 55.000 0.00 0.00 0.00 3.07
1973 2115 0.250234 ACACCATCCGTCCAGTCATG 59.750 55.000 0.00 0.00 0.00 3.07
1974 2116 0.250234 CACACCATCCGTCCAGTCAT 59.750 55.000 0.00 0.00 0.00 3.06
1975 2117 1.671166 CACACCATCCGTCCAGTCA 59.329 57.895 0.00 0.00 0.00 3.41
1976 2118 1.741770 GCACACCATCCGTCCAGTC 60.742 63.158 0.00 0.00 0.00 3.51
1978 2120 1.742880 CAGCACACCATCCGTCCAG 60.743 63.158 0.00 0.00 0.00 3.86
1997 2148 5.587388 AGTTTTGTGATGCTGGAATATGG 57.413 39.130 0.00 0.00 0.00 2.74
2003 2154 6.265196 ACAATCTTAAGTTTTGTGATGCTGGA 59.735 34.615 19.02 0.00 32.61 3.86
2028 2179 7.114754 ACTTCAGCATAGAATTTGAAGATGGA 58.885 34.615 17.89 0.00 45.82 3.41
2038 2189 9.107177 CACAGATTAAGACTTCAGCATAGAATT 57.893 33.333 0.00 0.00 0.00 2.17
2060 2211 5.295950 TCAAATTTTGGTGGTATTGCACAG 58.704 37.500 9.18 0.00 0.00 3.66
2073 2224 7.318141 AGTGATGCTAGTCAATCAAATTTTGG 58.682 34.615 9.18 0.00 0.00 3.28
2078 2229 5.359009 CCCAAGTGATGCTAGTCAATCAAAT 59.641 40.000 6.50 0.00 0.00 2.32
2082 2233 3.873952 GACCCAAGTGATGCTAGTCAATC 59.126 47.826 0.00 0.00 0.00 2.67
2092 2243 7.578310 ATGATAATCAAAGACCCAAGTGATG 57.422 36.000 0.00 0.00 31.20 3.07
2122 2273 9.745880 ATTGAGCTAATTTCTAATGATGCAAAG 57.254 29.630 0.00 0.00 0.00 2.77
2125 2276 8.565416 CAGATTGAGCTAATTTCTAATGATGCA 58.435 33.333 0.00 0.00 0.00 3.96
2138 2290 4.081420 ACGAGACCAACAGATTGAGCTAAT 60.081 41.667 0.00 0.00 38.15 1.73
2150 2302 3.547054 ACTAAACCAACGAGACCAACA 57.453 42.857 0.00 0.00 0.00 3.33
2151 2303 5.334435 GTTACTAAACCAACGAGACCAAC 57.666 43.478 0.00 0.00 0.00 3.77
2181 2333 3.815401 GGATATCTGCCGCACTGTATTTT 59.185 43.478 2.05 0.00 0.00 1.82
2182 2334 3.181455 TGGATATCTGCCGCACTGTATTT 60.181 43.478 2.05 0.00 0.00 1.40
2183 2335 2.368548 TGGATATCTGCCGCACTGTATT 59.631 45.455 2.05 0.00 0.00 1.89
2185 2337 1.408969 TGGATATCTGCCGCACTGTA 58.591 50.000 2.05 0.00 0.00 2.74
2187 2339 1.202568 TCTTGGATATCTGCCGCACTG 60.203 52.381 2.05 0.00 0.00 3.66
2189 2341 1.069204 TCTCTTGGATATCTGCCGCAC 59.931 52.381 2.05 0.00 0.00 5.34
2190 2342 1.069204 GTCTCTTGGATATCTGCCGCA 59.931 52.381 2.05 0.00 0.00 5.69
2191 2343 1.069204 TGTCTCTTGGATATCTGCCGC 59.931 52.381 2.05 0.00 0.00 6.53
2192 2344 3.459232 TTGTCTCTTGGATATCTGCCG 57.541 47.619 2.05 0.00 0.00 5.69
2193 2345 4.514441 CACATTGTCTCTTGGATATCTGCC 59.486 45.833 2.05 0.00 0.00 4.85
2194 2346 4.024218 GCACATTGTCTCTTGGATATCTGC 60.024 45.833 2.05 0.00 0.00 4.26
2195 2347 5.121105 TGCACATTGTCTCTTGGATATCTG 58.879 41.667 2.05 0.00 0.00 2.90
2196 2348 5.363562 TGCACATTGTCTCTTGGATATCT 57.636 39.130 2.05 0.00 0.00 1.98
2199 2351 5.534278 TGTTTTGCACATTGTCTCTTGGATA 59.466 36.000 0.00 0.00 0.00 2.59
2200 2352 4.341806 TGTTTTGCACATTGTCTCTTGGAT 59.658 37.500 0.00 0.00 0.00 3.41
2202 2354 4.044336 TGTTTTGCACATTGTCTCTTGG 57.956 40.909 0.00 0.00 0.00 3.61
2203 2355 3.488310 GCTGTTTTGCACATTGTCTCTTG 59.512 43.478 0.00 0.00 33.76 3.02
2204 2356 3.491447 GGCTGTTTTGCACATTGTCTCTT 60.491 43.478 0.00 0.00 33.76 2.85
2205 2357 2.035066 GGCTGTTTTGCACATTGTCTCT 59.965 45.455 0.00 0.00 33.76 3.10
2206 2358 2.397549 GGCTGTTTTGCACATTGTCTC 58.602 47.619 0.00 0.00 33.76 3.36
2207 2359 1.069049 GGGCTGTTTTGCACATTGTCT 59.931 47.619 0.00 0.00 36.18 3.41
2208 2360 1.202510 TGGGCTGTTTTGCACATTGTC 60.203 47.619 0.00 0.00 41.96 3.18
2209 2361 0.829333 TGGGCTGTTTTGCACATTGT 59.171 45.000 0.00 0.00 41.96 2.71
2210 2362 3.682766 TGGGCTGTTTTGCACATTG 57.317 47.368 0.00 0.00 41.96 2.82
2217 2369 4.190772 ACAACTCAAAATGGGCTGTTTTG 58.809 39.130 16.38 16.38 44.10 2.44
2218 2370 4.162131 AGACAACTCAAAATGGGCTGTTTT 59.838 37.500 0.00 0.00 0.00 2.43
2219 2371 3.706086 AGACAACTCAAAATGGGCTGTTT 59.294 39.130 0.00 0.00 0.00 2.83
2221 2373 2.624838 CAGACAACTCAAAATGGGCTGT 59.375 45.455 0.00 0.00 0.00 4.40
2222 2374 2.029649 CCAGACAACTCAAAATGGGCTG 60.030 50.000 0.00 0.00 0.00 4.85
2224 2376 2.238521 TCCAGACAACTCAAAATGGGC 58.761 47.619 0.00 0.00 0.00 5.36
2225 2377 3.304659 CGTTCCAGACAACTCAAAATGGG 60.305 47.826 0.00 0.00 0.00 4.00
2226 2378 3.563808 TCGTTCCAGACAACTCAAAATGG 59.436 43.478 0.00 0.00 0.00 3.16
2228 2380 4.451900 AGTCGTTCCAGACAACTCAAAAT 58.548 39.130 0.00 0.00 43.24 1.82
2229 2381 3.869065 AGTCGTTCCAGACAACTCAAAA 58.131 40.909 0.00 0.00 43.24 2.44
2230 2382 3.536956 AGTCGTTCCAGACAACTCAAA 57.463 42.857 0.00 0.00 43.24 2.69
2231 2383 3.536956 AAGTCGTTCCAGACAACTCAA 57.463 42.857 0.00 0.00 43.24 3.02
2232 2384 3.382227 TGTAAGTCGTTCCAGACAACTCA 59.618 43.478 0.00 0.00 43.24 3.41
2233 2385 3.973657 TGTAAGTCGTTCCAGACAACTC 58.026 45.455 0.00 0.00 43.24 3.01
2234 2386 4.395959 TTGTAAGTCGTTCCAGACAACT 57.604 40.909 0.00 0.00 43.24 3.16
2235 2387 5.064325 ACTTTTGTAAGTCGTTCCAGACAAC 59.936 40.000 0.00 0.00 40.60 3.32
2236 2388 5.064198 CACTTTTGTAAGTCGTTCCAGACAA 59.936 40.000 0.00 0.00 42.67 3.18
2237 2389 4.569162 CACTTTTGTAAGTCGTTCCAGACA 59.431 41.667 0.00 0.00 42.67 3.41
2238 2390 4.807304 TCACTTTTGTAAGTCGTTCCAGAC 59.193 41.667 0.00 0.00 42.67 3.51
2239 2391 5.013568 TCACTTTTGTAAGTCGTTCCAGA 57.986 39.130 0.00 0.00 42.67 3.86
2240 2392 5.499047 GTTCACTTTTGTAAGTCGTTCCAG 58.501 41.667 0.00 0.00 42.67 3.86
2241 2393 4.033129 CGTTCACTTTTGTAAGTCGTTCCA 59.967 41.667 0.00 0.00 42.67 3.53
2242 2394 4.511734 CGTTCACTTTTGTAAGTCGTTCC 58.488 43.478 0.00 0.00 42.67 3.62
2243 2395 4.268405 TCCGTTCACTTTTGTAAGTCGTTC 59.732 41.667 0.00 0.00 42.67 3.95
2244 2396 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
2245 2397 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
2246 2398 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
2247 2399 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
2248 2400 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
2249 2401 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
2250 2402 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
2251 2403 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
2252 2404 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
2253 2405 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
2254 2406 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
2255 2407 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
2256 2408 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
2257 2409 3.666345 ATACTACTCCCTCCGTTCACT 57.334 47.619 0.00 0.00 0.00 3.41
2258 2410 4.732672 AAATACTACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
2259 2411 5.246656 TGAAAAATACTACTCCCTCCGTTCA 59.753 40.000 0.00 0.00 0.00 3.18
2260 2412 5.727434 TGAAAAATACTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
2261 2413 5.750352 TGAAAAATACTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
2262 2414 5.485620 GTTGAAAAATACTACTCCCTCCGT 58.514 41.667 0.00 0.00 0.00 4.69
2263 2415 4.874396 GGTTGAAAAATACTACTCCCTCCG 59.126 45.833 0.00 0.00 0.00 4.63
2264 2416 5.812286 TGGTTGAAAAATACTACTCCCTCC 58.188 41.667 0.00 0.00 0.00 4.30
2265 2417 7.939784 AATGGTTGAAAAATACTACTCCCTC 57.060 36.000 0.00 0.00 0.00 4.30
2266 2418 7.947890 TGAAATGGTTGAAAAATACTACTCCCT 59.052 33.333 0.00 0.00 0.00 4.20
2267 2419 8.117813 TGAAATGGTTGAAAAATACTACTCCC 57.882 34.615 0.00 0.00 0.00 4.30
2268 2420 9.573133 CATGAAATGGTTGAAAAATACTACTCC 57.427 33.333 0.00 0.00 41.79 3.85
2288 2440 9.970395 GCTATTTATGTCAATCCATTCATGAAA 57.030 29.630 13.09 0.00 0.00 2.69
2297 2449 3.563808 GGTGCGCTATTTATGTCAATCCA 59.436 43.478 9.73 0.00 0.00 3.41
2298 2450 3.563808 TGGTGCGCTATTTATGTCAATCC 59.436 43.478 9.73 0.00 0.00 3.01
2304 2456 3.605634 TCACTTGGTGCGCTATTTATGT 58.394 40.909 9.73 0.00 32.98 2.29
2311 2463 1.075542 CGAAATCACTTGGTGCGCTA 58.924 50.000 9.73 0.00 32.98 4.26
2313 2465 1.154225 CCGAAATCACTTGGTGCGC 60.154 57.895 0.00 0.00 32.98 6.09
2314 2466 1.501741 CCCGAAATCACTTGGTGCG 59.498 57.895 0.00 0.00 32.98 5.34
2338 2493 2.252714 GGACATTAAACCTTTGGCCCA 58.747 47.619 0.00 0.00 31.95 5.36
2339 2494 2.252714 TGGACATTAAACCTTTGGCCC 58.747 47.619 0.00 0.00 37.79 5.80
2346 2501 9.125026 GACAAGATATCATTGGACATTAAACCT 57.875 33.333 5.32 0.00 31.76 3.50
2347 2502 8.070171 CGACAAGATATCATTGGACATTAAACC 58.930 37.037 5.32 0.00 31.76 3.27
2360 2515 9.102757 GTGCCAATTATATCGACAAGATATCAT 57.897 33.333 5.32 0.00 46.67 2.45
2367 2522 6.958255 TGATTGTGCCAATTATATCGACAAG 58.042 36.000 0.00 0.00 0.00 3.16
2372 2527 6.025896 GCATCTGATTGTGCCAATTATATCG 58.974 40.000 2.53 0.00 35.35 2.92
2410 2567 8.233868 CGGTGATTGTCATTGAGTAAATTACAA 58.766 33.333 5.89 2.99 43.21 2.41
2424 2581 5.105106 TGGTGTCTTATACGGTGATTGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
2425 2582 4.221041 TGGTGTCTTATACGGTGATTGTCA 59.779 41.667 0.00 0.00 0.00 3.58
2426 2583 4.751060 TGGTGTCTTATACGGTGATTGTC 58.249 43.478 0.00 0.00 0.00 3.18
2427 2584 4.811969 TGGTGTCTTATACGGTGATTGT 57.188 40.909 0.00 0.00 0.00 2.71
2428 2585 6.984474 AGTTATGGTGTCTTATACGGTGATTG 59.016 38.462 0.00 0.00 0.00 2.67
2430 2587 6.322969 TCAGTTATGGTGTCTTATACGGTGAT 59.677 38.462 0.00 0.00 0.00 3.06
2431 2588 5.653330 TCAGTTATGGTGTCTTATACGGTGA 59.347 40.000 0.00 0.00 0.00 4.02
2432 2589 5.898174 TCAGTTATGGTGTCTTATACGGTG 58.102 41.667 0.00 0.00 0.00 4.94
2433 2590 6.513180 CATCAGTTATGGTGTCTTATACGGT 58.487 40.000 0.00 0.00 32.50 4.83
2436 2593 7.928706 AGAAGCATCAGTTATGGTGTCTTATAC 59.071 37.037 0.00 0.00 45.52 1.47
2437 2594 7.928167 CAGAAGCATCAGTTATGGTGTCTTATA 59.072 37.037 0.00 0.00 45.52 0.98
2438 2595 6.765036 CAGAAGCATCAGTTATGGTGTCTTAT 59.235 38.462 0.00 0.00 45.52 1.73
2439 2596 6.070824 TCAGAAGCATCAGTTATGGTGTCTTA 60.071 38.462 0.00 0.00 45.52 2.10
2442 2599 4.507710 TCAGAAGCATCAGTTATGGTGTC 58.492 43.478 0.00 0.00 45.52 3.67
2443 2600 4.558226 TCAGAAGCATCAGTTATGGTGT 57.442 40.909 0.00 0.00 45.52 4.16
2444 2601 5.885230 TTTCAGAAGCATCAGTTATGGTG 57.115 39.130 0.00 0.00 45.52 4.17
2466 2623 5.734720 ACAGTGTAGCACATAGTAAGCATT 58.265 37.500 0.00 0.00 36.74 3.56
2471 2628 7.818997 ATAGCTACAGTGTAGCACATAGTAA 57.181 36.000 41.83 23.33 42.68 2.24
2472 2629 7.818997 AATAGCTACAGTGTAGCACATAGTA 57.181 36.000 41.83 29.45 42.68 1.82
2476 2633 6.227298 AGAAATAGCTACAGTGTAGCACAT 57.773 37.500 41.83 33.23 42.68 3.21
2505 2667 8.700644 GGTATGTCAAAATTATAGTCAGCTACG 58.299 37.037 0.00 0.00 0.00 3.51
2506 2668 9.765795 AGGTATGTCAAAATTATAGTCAGCTAC 57.234 33.333 0.00 0.00 0.00 3.58
2518 2680 8.806146 ACAGCAATAAGAAGGTATGTCAAAATT 58.194 29.630 0.00 0.00 0.00 1.82
2522 2689 5.647658 CCACAGCAATAAGAAGGTATGTCAA 59.352 40.000 0.00 0.00 0.00 3.18
2524 2691 5.186198 ACCACAGCAATAAGAAGGTATGTC 58.814 41.667 0.00 0.00 0.00 3.06
2530 2697 2.557924 TGCAACCACAGCAATAAGAAGG 59.442 45.455 0.00 0.00 39.39 3.46
2668 2835 2.221169 TCCGCTACAATGGCATCATTC 58.779 47.619 0.00 0.00 41.29 2.67
2722 2889 2.288640 ACAAGCAAAGGATTGAAGCTGC 60.289 45.455 0.00 0.00 42.95 5.25
2782 2949 1.676635 GCTGAGAGCAATGCCACCA 60.677 57.895 0.00 0.00 41.89 4.17
2806 2973 1.355720 AGGAACATGAGTTTGGGGGAG 59.644 52.381 0.00 0.00 38.30 4.30
2840 3007 2.300152 TGAAGAACTGGAGCACGAGAAT 59.700 45.455 0.00 0.00 0.00 2.40
2884 3051 1.911057 CCTTTGGGAGTTTGAGGGAC 58.089 55.000 0.00 0.00 33.58 4.46
2905 3072 7.818997 TGAGATCACGGATGTATTAGTACTT 57.181 36.000 0.00 0.00 0.00 2.24
2907 3074 6.583050 GCTTGAGATCACGGATGTATTAGTAC 59.417 42.308 0.00 0.00 0.00 2.73
2920 3087 2.492019 TACGGATGCTTGAGATCACG 57.508 50.000 0.00 0.00 0.00 4.35
2926 3093 3.252215 TGGTTTGTTTACGGATGCTTGAG 59.748 43.478 0.00 0.00 0.00 3.02
2929 3096 4.339814 TCTTTGGTTTGTTTACGGATGCTT 59.660 37.500 0.00 0.00 0.00 3.91
2961 3128 3.264897 CCGGCATACAGAGCGCAC 61.265 66.667 11.47 2.25 0.00 5.34
2962 3129 2.514510 TTTCCGGCATACAGAGCGCA 62.515 55.000 11.47 0.00 0.00 6.09
3010 3177 5.638133 AGAAATGGTATGGCAGCATAAGAT 58.362 37.500 0.00 0.00 44.59 2.40
3013 3180 5.940617 AGTAGAAATGGTATGGCAGCATAA 58.059 37.500 0.00 0.00 44.59 1.90
3028 3195 3.775316 AGAACATGGTCCCGAGTAGAAAT 59.225 43.478 7.26 0.00 0.00 2.17
3112 3279 0.767375 AAGCCAAGAGAGCCACTTGA 59.233 50.000 14.01 0.00 44.92 3.02
3208 3375 6.691754 AACACATCTGACAACATTACAACA 57.308 33.333 0.00 0.00 0.00 3.33
3211 3378 8.845227 ACAAATAACACATCTGACAACATTACA 58.155 29.630 0.00 0.00 0.00 2.41
3226 3393 7.681679 TGTATACTCCCTGAACAAATAACACA 58.318 34.615 4.17 0.00 0.00 3.72
3238 3405 4.030913 CCACCTTTCTGTATACTCCCTGA 58.969 47.826 4.17 0.00 0.00 3.86
3253 3420 4.375313 AGGAGTCTGATATTCCCACCTTT 58.625 43.478 0.00 0.00 34.49 3.11
3539 3706 7.230913 CCTCTCTTTAATCCATGATGAGCAAAT 59.769 37.037 0.00 0.00 0.00 2.32
3667 3844 2.450500 TGGAATTTAGGCAGCCCCATAT 59.549 45.455 8.22 0.00 35.39 1.78
3713 3890 5.159273 ACTGAAGAACCAAATCCTCTCTC 57.841 43.478 0.00 0.00 0.00 3.20
3724 3901 1.540363 GCACTCGGAACTGAAGAACCA 60.540 52.381 0.00 0.00 0.00 3.67
3769 3946 4.953667 TGTATATCTGCTCTTGCCTCTTG 58.046 43.478 0.00 0.00 38.71 3.02
3858 4035 7.280356 ACAGTCTTACAGAAGCTAAAAAGGAA 58.720 34.615 0.00 0.00 32.21 3.36
3860 4037 8.496751 GTTACAGTCTTACAGAAGCTAAAAAGG 58.503 37.037 0.00 0.00 32.21 3.11
3861 4038 9.262358 AGTTACAGTCTTACAGAAGCTAAAAAG 57.738 33.333 0.00 0.00 32.21 2.27
3962 4141 5.977129 ACAAAGAACGAAAAGAAATGCGATT 59.023 32.000 0.00 0.00 0.00 3.34
3963 4142 5.399301 CACAAAGAACGAAAAGAAATGCGAT 59.601 36.000 0.00 0.00 0.00 4.58
3978 4162 5.310720 AGACTTTTCCACACACAAAGAAC 57.689 39.130 0.00 0.00 32.73 3.01
4006 4190 6.636705 CATGAAAGATGGTCATGGACAATTT 58.363 36.000 6.52 0.00 45.71 1.82
4015 4199 6.092670 CAGTTCGTTACATGAAAGATGGTCAT 59.907 38.462 0.00 0.00 36.11 3.06
4018 4202 5.547465 TCAGTTCGTTACATGAAAGATGGT 58.453 37.500 0.00 0.00 0.00 3.55
4087 4271 3.475566 TCAGAACCAGGAGTTTGTCTG 57.524 47.619 0.00 0.00 39.40 3.51
4090 4274 3.576982 TCGTATCAGAACCAGGAGTTTGT 59.423 43.478 0.00 0.00 39.40 2.83
4093 4277 3.432378 AGTCGTATCAGAACCAGGAGTT 58.568 45.455 0.00 0.00 43.07 3.01
4096 4280 3.056107 CCAAAGTCGTATCAGAACCAGGA 60.056 47.826 0.00 0.00 0.00 3.86
4097 4281 3.262420 CCAAAGTCGTATCAGAACCAGG 58.738 50.000 0.00 0.00 0.00 4.45
4098 4282 3.926616 ACCAAAGTCGTATCAGAACCAG 58.073 45.455 0.00 0.00 0.00 4.00
4100 4284 5.476614 ACTAACCAAAGTCGTATCAGAACC 58.523 41.667 0.00 0.00 0.00 3.62
4101 4285 7.533426 TCTACTAACCAAAGTCGTATCAGAAC 58.467 38.462 0.00 0.00 0.00 3.01
4102 4286 7.692460 TCTACTAACCAAAGTCGTATCAGAA 57.308 36.000 0.00 0.00 0.00 3.02
4104 4288 8.407064 AGATTCTACTAACCAAAGTCGTATCAG 58.593 37.037 0.00 0.00 27.92 2.90
4105 4289 8.188799 CAGATTCTACTAACCAAAGTCGTATCA 58.811 37.037 0.00 0.00 27.92 2.15
4139 4356 6.940298 GGGAGTTTATTATGGCTGCATAGTAA 59.060 38.462 0.50 3.08 0.00 2.24
4140 4357 6.043822 TGGGAGTTTATTATGGCTGCATAGTA 59.956 38.462 0.50 0.00 0.00 1.82
4141 4358 5.163099 TGGGAGTTTATTATGGCTGCATAGT 60.163 40.000 0.50 0.00 0.00 2.12
4154 4414 5.163195 ACGCATCTATCCTTGGGAGTTTATT 60.163 40.000 0.00 0.00 34.05 1.40
4289 4552 7.596749 ATTTATGTGTGTTCTACAGCAGTAC 57.403 36.000 0.00 0.00 40.69 2.73
4327 4598 2.229543 GCCTCACAGCATGAAATTGACA 59.770 45.455 0.00 0.00 39.69 3.58
4363 6270 8.087750 AGAAAACTATGCTTATAGCTAGCTCAG 58.912 37.037 23.26 16.48 42.97 3.35
4434 6341 2.881074 TCAGCGACAGATTTCAGCTAC 58.119 47.619 0.00 0.00 36.28 3.58
4435 6342 3.808466 ATCAGCGACAGATTTCAGCTA 57.192 42.857 0.00 0.00 36.28 3.32
4436 6343 2.687700 ATCAGCGACAGATTTCAGCT 57.312 45.000 0.00 0.00 38.90 4.24
4437 6344 3.754188 AAATCAGCGACAGATTTCAGC 57.246 42.857 4.86 0.00 40.63 4.26
4438 6345 7.848051 GTGTATTAAATCAGCGACAGATTTCAG 59.152 37.037 11.67 0.00 42.82 3.02
4439 6346 7.333174 TGTGTATTAAATCAGCGACAGATTTCA 59.667 33.333 11.67 4.47 42.82 2.69
4440 6347 7.636359 GTGTGTATTAAATCAGCGACAGATTTC 59.364 37.037 11.67 2.18 42.82 2.17
4441 6348 7.334421 AGTGTGTATTAAATCAGCGACAGATTT 59.666 33.333 12.57 12.57 45.05 2.17
4442 6349 6.818644 AGTGTGTATTAAATCAGCGACAGATT 59.181 34.615 0.00 0.00 37.30 2.40
4443 6350 6.256539 CAGTGTGTATTAAATCAGCGACAGAT 59.743 38.462 0.00 0.00 0.00 2.90
4444 6351 5.576774 CAGTGTGTATTAAATCAGCGACAGA 59.423 40.000 0.00 0.00 0.00 3.41
4445 6352 5.348724 ACAGTGTGTATTAAATCAGCGACAG 59.651 40.000 0.00 0.00 0.00 3.51
4479 6386 7.126733 ACATCCCTCTGTTCTATAGTAGTTGT 58.873 38.462 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.