Multiple sequence alignment - TraesCS1B01G254400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G254400 chr1B 100.000 4117 0 0 1 4117 448536366 448532250 0.000000e+00 7603.0
1 TraesCS1B01G254400 chr1B 100.000 55 0 0 3551 3605 448532764 448532710 7.280000e-18 102.0
2 TraesCS1B01G254400 chr1B 100.000 55 0 0 3603 3657 448532816 448532762 7.280000e-18 102.0
3 TraesCS1B01G254400 chr1A 93.465 1622 76 16 1801 3416 430625546 430623949 0.000000e+00 2381.0
4 TraesCS1B01G254400 chr1A 93.263 950 46 12 822 1754 430626477 430625529 0.000000e+00 1384.0
5 TraesCS1B01G254400 chr1A 92.537 536 17 10 3603 4117 430623934 430623401 0.000000e+00 747.0
6 TraesCS1B01G254400 chr1A 83.727 719 76 27 74 782 430627695 430627008 3.470000e-180 641.0
7 TraesCS1B01G254400 chr1D 94.218 1470 67 11 1959 3416 333004597 333003134 0.000000e+00 2228.0
8 TraesCS1B01G254400 chr1D 91.759 813 45 14 958 1754 333005639 333004833 0.000000e+00 1110.0
9 TraesCS1B01G254400 chr1D 82.439 410 39 19 3603 4003 333003119 333002734 1.100000e-85 327.0
10 TraesCS1B01G254400 chr1D 93.548 155 10 0 1801 1955 333004850 333004696 8.900000e-57 231.0
11 TraesCS1B01G254400 chr1D 98.305 118 1 1 3988 4104 333002716 333002599 5.390000e-49 206.0
12 TraesCS1B01G254400 chr3B 87.179 195 19 6 3395 3588 61536193 61536382 2.490000e-52 217.0
13 TraesCS1B01G254400 chr7B 94.776 134 5 2 3402 3533 252178187 252178054 1.500000e-49 207.0
14 TraesCS1B01G254400 chr2B 98.305 118 2 0 3415 3532 578044894 578045011 1.500000e-49 207.0
15 TraesCS1B01G254400 chr2B 93.382 136 7 2 3396 3531 385566810 385566943 2.510000e-47 200.0
16 TraesCS1B01G254400 chr2B 93.750 64 4 0 3535 3598 153858242 153858305 3.390000e-16 97.1
17 TraesCS1B01G254400 chr2B 90.909 55 5 0 3544 3598 257521185 257521239 1.590000e-09 75.0
18 TraesCS1B01G254400 chr2B 85.965 57 6 1 3544 3598 707676422 707676366 4.440000e-05 60.2
19 TraesCS1B01G254400 chr2D 88.953 172 12 6 3412 3582 572692615 572692780 5.390000e-49 206.0
20 TraesCS1B01G254400 chr5D 85.641 195 22 5 3395 3588 543067419 543067230 2.510000e-47 200.0
21 TraesCS1B01G254400 chr3A 87.861 173 15 6 3396 3568 750495678 750495512 9.030000e-47 198.0
22 TraesCS1B01G254400 chr3A 97.917 48 1 0 3603 3650 156234717 156234764 2.640000e-12 84.2
23 TraesCS1B01G254400 chr5B 89.744 156 10 6 3412 3567 364483351 364483500 1.170000e-45 195.0
24 TraesCS1B01G254400 chr5B 95.349 43 1 1 1757 1798 403779944 403779902 2.660000e-07 67.6
25 TraesCS1B01G254400 chr4B 86.705 173 15 8 3396 3567 371434461 371434296 7.030000e-43 185.0
26 TraesCS1B01G254400 chr5A 89.773 88 9 0 3511 3598 484559401 484559488 3.360000e-21 113.0
27 TraesCS1B01G254400 chr7D 95.652 69 2 1 3531 3598 192371605 192371537 4.350000e-20 110.0
28 TraesCS1B01G254400 chr7D 97.917 48 1 0 3603 3650 192371584 192371537 2.640000e-12 84.2
29 TraesCS1B01G254400 chr7D 81.188 101 11 6 3603 3698 106374517 106374420 1.590000e-09 75.0
30 TraesCS1B01G254400 chr4A 84.685 111 7 3 3603 3703 460230766 460230656 7.280000e-18 102.0
31 TraesCS1B01G254400 chr4A 84.259 108 7 5 3603 3700 109850090 109850197 3.390000e-16 97.1
32 TraesCS1B01G254400 chrUn 82.407 108 9 3 3603 3700 126680513 126680620 7.330000e-13 86.1
33 TraesCS1B01G254400 chr7A 81.818 110 11 5 3603 3703 254891001 254890892 2.640000e-12 84.2
34 TraesCS1B01G254400 chr4D 95.833 48 2 0 3603 3650 483111452 483111405 1.230000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G254400 chr1B 448532250 448536366 4116 True 2602.333333 7603 100.0000 1 4117 3 chr1B.!!$R1 4116
1 TraesCS1B01G254400 chr1A 430623401 430627695 4294 True 1288.250000 2381 90.7480 74 4117 4 chr1A.!!$R1 4043
2 TraesCS1B01G254400 chr1D 333002599 333005639 3040 True 820.400000 2228 92.0538 958 4104 5 chr1D.!!$R1 3146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1476 0.765510 AGGCTGACCCGAAAACTCTT 59.234 50.0 0.0 0.0 39.21 2.85 F
1762 2286 0.036952 CATGACCGCAGAACAGAGGT 60.037 55.0 0.0 0.0 44.76 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 2328 0.175760 GAACTCCTGCGGTCATGCTA 59.824 55.0 0.00 0.0 35.36 3.49 R
3508 4161 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.446570 GAGCCAGCATGCACCCAC 61.447 66.667 21.98 4.24 31.97 4.61
19 20 3.933048 GAGCCAGCATGCACCCACT 62.933 63.158 21.98 9.42 31.97 4.00
20 21 3.446570 GCCAGCATGCACCCACTC 61.447 66.667 21.98 0.00 31.97 3.51
21 22 2.753043 CCAGCATGCACCCACTCC 60.753 66.667 21.98 0.00 31.97 3.85
22 23 2.753043 CAGCATGCACCCACTCCC 60.753 66.667 21.98 0.00 0.00 4.30
23 24 4.052518 AGCATGCACCCACTCCCC 62.053 66.667 21.98 0.00 0.00 4.81
24 25 4.052518 GCATGCACCCACTCCCCT 62.053 66.667 14.21 0.00 0.00 4.79
25 26 2.273449 CATGCACCCACTCCCCTC 59.727 66.667 0.00 0.00 0.00 4.30
26 27 3.017581 ATGCACCCACTCCCCTCC 61.018 66.667 0.00 0.00 0.00 4.30
38 39 2.772622 CCCTCCCGTGCCCCTTAT 60.773 66.667 0.00 0.00 0.00 1.73
39 40 2.383601 CCCTCCCGTGCCCCTTATT 61.384 63.158 0.00 0.00 0.00 1.40
40 41 1.152963 CCTCCCGTGCCCCTTATTG 60.153 63.158 0.00 0.00 0.00 1.90
41 42 1.152963 CTCCCGTGCCCCTTATTGG 60.153 63.158 0.00 0.00 0.00 3.16
64 65 2.444706 CCCATGAGAGGGGCGAGA 60.445 66.667 0.00 0.00 45.60 4.04
65 66 2.801631 CCCATGAGAGGGGCGAGAC 61.802 68.421 0.00 0.00 45.60 3.36
66 67 2.415010 CATGAGAGGGGCGAGACG 59.585 66.667 0.00 0.00 0.00 4.18
78 79 2.358737 GAGACGCCCCCACTTGTG 60.359 66.667 0.00 0.00 0.00 3.33
86 87 2.312390 GCCCCCACTTGTGTTTTTAGA 58.688 47.619 0.00 0.00 0.00 2.10
94 95 6.754675 CCCACTTGTGTTTTTAGATCGTTTTT 59.245 34.615 0.00 0.00 0.00 1.94
166 167 9.849166 TTGGGATTTCAACGAAATACTAAATTC 57.151 29.630 10.65 0.00 39.30 2.17
168 169 9.503427 GGGATTTCAACGAAATACTAAATTCAG 57.497 33.333 10.65 0.00 41.56 3.02
266 269 8.443953 AAGAGAAGATGGCTATGAATTACAAC 57.556 34.615 0.00 0.00 0.00 3.32
271 274 9.294030 GAAGATGGCTATGAATTACAACAAAAG 57.706 33.333 0.00 0.00 0.00 2.27
277 280 9.423061 GGCTATGAATTACAACAAAAGTTGATT 57.577 29.630 14.55 5.40 37.72 2.57
352 355 5.021033 TCAGCAAACCAAAATGTTCATGT 57.979 34.783 0.00 0.00 0.00 3.21
372 375 8.334016 TCATGTGTTTTAAAAACTGTTCATCG 57.666 30.769 1.31 0.00 0.00 3.84
431 434 2.515912 GATTCCAAAATGTTCGCCGAC 58.484 47.619 0.00 0.00 0.00 4.79
477 481 6.822676 AGAAATGGTTTGCTGATTGAAAAACA 59.177 30.769 0.00 0.00 44.37 2.83
481 486 5.233902 TGGTTTGCTGATTGAAAAACATTCG 59.766 36.000 0.00 0.00 36.04 3.34
485 490 3.365820 GCTGATTGAAAAACATTCGCCAG 59.634 43.478 0.00 0.00 33.26 4.85
557 562 7.595311 AAAAGTTCACAATTTCGAAAAAGCT 57.405 28.000 15.66 4.01 0.00 3.74
558 563 8.696410 AAAAGTTCACAATTTCGAAAAAGCTA 57.304 26.923 15.66 0.00 0.00 3.32
563 568 7.851822 TCACAATTTCGAAAAAGCTATGTTC 57.148 32.000 15.66 0.00 0.00 3.18
564 569 7.421599 TCACAATTTCGAAAAAGCTATGTTCA 58.578 30.769 15.66 1.10 0.00 3.18
629 634 9.579610 GAAAATTTGAAATATGTTCACGGTTTG 57.420 29.630 0.00 0.00 0.00 2.93
698 704 7.959733 AGTTTTCAAATTTGGAAAAGACGTTC 58.040 30.769 23.21 11.12 42.87 3.95
699 705 7.600752 AGTTTTCAAATTTGGAAAAGACGTTCA 59.399 29.630 23.21 0.00 42.87 3.18
701 707 6.202516 TCAAATTTGGAAAAGACGTTCACT 57.797 33.333 17.90 0.00 0.00 3.41
708 714 6.928979 TGGAAAAGACGTTCACTAAAATGA 57.071 33.333 0.00 0.00 0.00 2.57
712 718 8.529102 GGAAAAGACGTTCACTAAAATGAAAAC 58.471 33.333 0.00 0.00 40.22 2.43
859 1359 2.951229 AATCCGGTTCAGTGAAGGTT 57.049 45.000 5.62 0.00 0.00 3.50
870 1370 1.067495 AGTGAAGGTTCTAGACAGCGC 60.067 52.381 0.00 0.00 0.00 5.92
872 1372 0.802607 GAAGGTTCTAGACAGCGCCG 60.803 60.000 2.29 0.00 0.00 6.46
956 1458 4.762289 AGCCTACCTTAGAATGGTGAAG 57.238 45.455 0.00 0.00 38.42 3.02
974 1476 0.765510 AGGCTGACCCGAAAACTCTT 59.234 50.000 0.00 0.00 39.21 2.85
1038 1545 2.047560 AGTTCGCCCGTTAGCACC 60.048 61.111 0.00 0.00 0.00 5.01
1039 1546 2.357760 GTTCGCCCGTTAGCACCA 60.358 61.111 0.00 0.00 0.00 4.17
1045 1566 3.118454 CCGTTAGCACCACAGCGG 61.118 66.667 0.00 0.00 40.15 5.52
1071 1592 2.181523 AAAAGCCCCAATCCCCTCCC 62.182 60.000 0.00 0.00 0.00 4.30
1148 1669 2.443016 CTACCGGCCTGGAGCTCT 60.443 66.667 18.74 0.00 42.00 4.09
1237 1758 1.327507 GCGGAACAACATCGCTTTTC 58.672 50.000 0.00 0.00 45.16 2.29
1317 1838 3.363844 GAGCTCCTGACTCACGGGC 62.364 68.421 0.87 0.00 44.31 6.13
1518 2039 3.119919 GGACGTCACTGAGTAGTAAGTGG 60.120 52.174 18.91 3.06 43.28 4.00
1521 2042 4.001652 CGTCACTGAGTAGTAAGTGGAGA 58.998 47.826 14.18 0.00 43.28 3.71
1522 2043 4.636648 CGTCACTGAGTAGTAAGTGGAGAT 59.363 45.833 14.18 0.00 43.28 2.75
1524 2045 4.876679 TCACTGAGTAGTAAGTGGAGATCG 59.123 45.833 14.18 0.00 43.28 3.69
1541 2062 1.980232 CGCCCAAACCCTAAACCCC 60.980 63.158 0.00 0.00 0.00 4.95
1568 2089 2.800881 TTAGATCGATGCGCATCAGT 57.199 45.000 40.42 30.67 37.69 3.41
1588 2110 3.017442 GTTCTTACCTGGAATCTTGGGC 58.983 50.000 0.00 0.00 0.00 5.36
1589 2111 1.564348 TCTTACCTGGAATCTTGGGCC 59.436 52.381 0.00 0.00 0.00 5.80
1612 2134 6.017109 GCCAAGTCTGTCTTATTTTGAGTGAA 60.017 38.462 0.00 0.00 34.66 3.18
1613 2135 7.355778 CCAAGTCTGTCTTATTTTGAGTGAAC 58.644 38.462 0.00 0.00 34.66 3.18
1659 2182 5.459107 GCTGATGTGTAACCTAGTTATGACG 59.541 44.000 0.00 0.00 34.36 4.35
1691 2215 9.767228 TTGTACTTACACATATGTTGTAACAGT 57.233 29.630 18.72 17.99 40.48 3.55
1698 2222 6.018262 ACACATATGTTGTAACAGTGTCACAC 60.018 38.462 5.37 0.00 39.90 3.82
1701 2225 4.873768 TGTTGTAACAGTGTCACACATG 57.126 40.909 11.40 8.18 36.74 3.21
1742 2266 6.176975 TGTTAACAATTCGCACCAGATTAG 57.823 37.500 5.64 0.00 0.00 1.73
1743 2267 3.764885 AACAATTCGCACCAGATTAGC 57.235 42.857 0.00 0.00 0.00 3.09
1744 2268 2.710377 ACAATTCGCACCAGATTAGCA 58.290 42.857 0.00 0.00 0.00 3.49
1745 2269 3.282021 ACAATTCGCACCAGATTAGCAT 58.718 40.909 0.00 0.00 0.00 3.79
1746 2270 3.065786 ACAATTCGCACCAGATTAGCATG 59.934 43.478 0.00 0.00 0.00 4.06
1747 2271 2.689553 TTCGCACCAGATTAGCATGA 57.310 45.000 0.00 0.00 0.00 3.07
1748 2272 1.939974 TCGCACCAGATTAGCATGAC 58.060 50.000 0.00 0.00 0.00 3.06
1749 2273 0.940126 CGCACCAGATTAGCATGACC 59.060 55.000 0.00 0.00 0.00 4.02
1750 2274 0.940126 GCACCAGATTAGCATGACCG 59.060 55.000 0.00 0.00 0.00 4.79
1751 2275 0.940126 CACCAGATTAGCATGACCGC 59.060 55.000 0.00 0.00 0.00 5.68
1752 2276 0.541392 ACCAGATTAGCATGACCGCA 59.459 50.000 0.00 0.00 0.00 5.69
1753 2277 1.224075 CCAGATTAGCATGACCGCAG 58.776 55.000 0.00 0.00 0.00 5.18
1754 2278 1.202568 CCAGATTAGCATGACCGCAGA 60.203 52.381 0.00 0.00 0.00 4.26
1755 2279 2.554142 CAGATTAGCATGACCGCAGAA 58.446 47.619 0.00 0.00 0.00 3.02
1756 2280 2.286294 CAGATTAGCATGACCGCAGAAC 59.714 50.000 0.00 0.00 0.00 3.01
1757 2281 2.093500 AGATTAGCATGACCGCAGAACA 60.093 45.455 0.00 0.00 0.00 3.18
1758 2282 1.725641 TTAGCATGACCGCAGAACAG 58.274 50.000 0.00 0.00 0.00 3.16
1759 2283 0.894835 TAGCATGACCGCAGAACAGA 59.105 50.000 0.00 0.00 0.00 3.41
1760 2284 0.390866 AGCATGACCGCAGAACAGAG 60.391 55.000 0.00 0.00 0.00 3.35
1761 2285 1.364626 GCATGACCGCAGAACAGAGG 61.365 60.000 0.00 0.00 34.32 3.69
1762 2286 0.036952 CATGACCGCAGAACAGAGGT 60.037 55.000 0.00 0.00 44.76 3.85
1763 2287 0.687354 ATGACCGCAGAACAGAGGTT 59.313 50.000 0.00 0.00 42.01 3.50
1764 2288 0.468226 TGACCGCAGAACAGAGGTTT 59.532 50.000 0.00 0.00 42.01 3.27
1765 2289 1.149148 GACCGCAGAACAGAGGTTTC 58.851 55.000 0.00 0.00 42.01 2.78
1766 2290 0.759346 ACCGCAGAACAGAGGTTTCT 59.241 50.000 0.00 0.00 38.64 2.52
1767 2291 1.270358 ACCGCAGAACAGAGGTTTCTC 60.270 52.381 0.00 0.00 38.64 2.87
1777 2301 1.814793 GAGGTTTCTCTGAAGGCCAC 58.185 55.000 5.01 0.00 37.07 5.01
1778 2302 1.349357 GAGGTTTCTCTGAAGGCCACT 59.651 52.381 5.01 0.00 37.07 4.00
1779 2303 1.072965 AGGTTTCTCTGAAGGCCACTG 59.927 52.381 5.01 2.80 0.00 3.66
1780 2304 1.202818 GGTTTCTCTGAAGGCCACTGT 60.203 52.381 5.01 0.00 0.00 3.55
1781 2305 2.576615 GTTTCTCTGAAGGCCACTGTT 58.423 47.619 5.01 0.00 0.00 3.16
1782 2306 2.952310 GTTTCTCTGAAGGCCACTGTTT 59.048 45.455 5.01 0.00 0.00 2.83
1783 2307 2.550830 TCTCTGAAGGCCACTGTTTC 57.449 50.000 5.01 0.00 0.00 2.78
1784 2308 1.151668 CTCTGAAGGCCACTGTTTCG 58.848 55.000 5.01 0.00 0.00 3.46
1785 2309 0.884704 TCTGAAGGCCACTGTTTCGC 60.885 55.000 5.01 0.00 0.00 4.70
1786 2310 1.856265 CTGAAGGCCACTGTTTCGCC 61.856 60.000 5.01 2.79 43.35 5.54
1789 2313 4.637771 GGCCACTGTTTCGCCTAT 57.362 55.556 0.00 0.00 39.70 2.57
1790 2314 3.772619 GGCCACTGTTTCGCCTATA 57.227 52.632 0.00 0.00 39.70 1.31
1791 2315 1.583054 GGCCACTGTTTCGCCTATAG 58.417 55.000 0.00 0.00 39.70 1.31
1792 2316 1.134491 GGCCACTGTTTCGCCTATAGT 60.134 52.381 0.00 0.00 39.70 2.12
1793 2317 2.202566 GCCACTGTTTCGCCTATAGTC 58.797 52.381 0.00 0.00 0.00 2.59
1794 2318 2.159085 GCCACTGTTTCGCCTATAGTCT 60.159 50.000 0.00 0.00 0.00 3.24
1795 2319 3.679083 GCCACTGTTTCGCCTATAGTCTT 60.679 47.826 0.00 0.00 0.00 3.01
1796 2320 4.504858 CCACTGTTTCGCCTATAGTCTTT 58.495 43.478 0.00 0.00 0.00 2.52
1797 2321 5.657474 CCACTGTTTCGCCTATAGTCTTTA 58.343 41.667 0.00 0.00 0.00 1.85
1798 2322 6.103997 CCACTGTTTCGCCTATAGTCTTTAA 58.896 40.000 0.00 0.00 0.00 1.52
1799 2323 6.592607 CCACTGTTTCGCCTATAGTCTTTAAA 59.407 38.462 0.00 0.00 0.00 1.52
1800 2324 7.118680 CCACTGTTTCGCCTATAGTCTTTAAAA 59.881 37.037 0.00 0.00 0.00 1.52
1801 2325 8.169268 CACTGTTTCGCCTATAGTCTTTAAAAG 58.831 37.037 0.00 0.00 0.00 2.27
1802 2326 8.092687 ACTGTTTCGCCTATAGTCTTTAAAAGA 58.907 33.333 0.00 0.00 34.51 2.52
1803 2327 9.099454 CTGTTTCGCCTATAGTCTTTAAAAGAT 57.901 33.333 0.00 0.00 40.18 2.40
1804 2328 9.444600 TGTTTCGCCTATAGTCTTTAAAAGATT 57.555 29.630 0.00 0.00 40.18 2.40
1887 2411 2.119611 TCCTGGGCTCGTTGGAGA 59.880 61.111 0.00 0.00 43.27 3.71
1894 2418 1.066430 GGGCTCGTTGGAGATTGTGTA 60.066 52.381 0.00 0.00 43.27 2.90
1917 2441 3.687572 TCGTCTTGTCTTATACGGAGC 57.312 47.619 0.00 0.00 36.08 4.70
1946 2470 5.788450 AGAAACTCTCACTATCAGTGTTGG 58.212 41.667 6.23 1.35 46.03 3.77
1957 2576 3.483808 TCAGTGTTGGTACTTGATGCA 57.516 42.857 0.00 0.00 0.00 3.96
2008 2627 2.385875 CGAGCATTCGTGCAGCTGT 61.386 57.895 16.64 0.00 41.84 4.40
2027 2646 5.699915 AGCTGTTGCATATGTATCTCACATC 59.300 40.000 4.29 0.00 43.64 3.06
2204 2824 4.446371 CTTTTCGGAGATGCTGGAAGTAT 58.554 43.478 0.00 0.00 43.99 2.12
2207 2827 4.060038 TCGGAGATGCTGGAAGTATTTC 57.940 45.455 0.00 0.00 40.25 2.17
2212 2832 5.455899 GGAGATGCTGGAAGTATTTCTCCAT 60.456 44.000 10.41 0.00 40.25 3.41
2229 2849 5.263599 TCTCCATGGATGTTGTGCTAATTT 58.736 37.500 16.63 0.00 0.00 1.82
2254 2874 3.368427 CCGTTCATGTCACACTAGTCCAT 60.368 47.826 0.00 0.00 0.00 3.41
2473 3093 3.048337 AGGCAAACATTGAATGCTTGG 57.952 42.857 19.32 6.88 36.96 3.61
2495 3115 5.820423 TGGCGCATAATTGAGTATGTTTAGT 59.180 36.000 10.83 0.00 34.51 2.24
2541 3161 0.459585 CCTTTGCTTAGGCGACGCTA 60.460 55.000 20.77 7.33 42.25 4.26
2555 3175 3.424433 GCGACGCTAAGTAGTTGCAAAAT 60.424 43.478 13.73 0.00 44.79 1.82
2568 3189 9.350951 AGTAGTTGCAAAATTTTCTAGGTAGTT 57.649 29.630 0.00 0.00 0.00 2.24
2634 3255 7.502561 AGTTCTTTGTTGGCTTCTTACATACTT 59.497 33.333 0.00 0.00 0.00 2.24
2675 3296 4.717877 TGAGGACTTGCTTCTGAAATTCA 58.282 39.130 0.00 0.00 0.00 2.57
2923 3544 2.777969 GCTGCATGAGCTAGCAAGT 58.222 52.632 18.83 0.00 45.21 3.16
3118 3743 4.442733 GCTAATTGCGACATGTCTCTAGTC 59.557 45.833 22.95 6.73 0.00 2.59
3250 3878 0.624500 ATAAGCTGGGGAGGAAGCCA 60.625 55.000 0.00 0.00 40.42 4.75
3343 3996 7.540400 TCAATACAAAACAGTGAACAAACACAG 59.460 33.333 0.00 0.00 42.45 3.66
3346 3999 6.740110 ACAAAACAGTGAACAAACACAGTAA 58.260 32.000 0.00 0.00 39.01 2.24
3347 4000 7.203910 ACAAAACAGTGAACAAACACAGTAAA 58.796 30.769 0.00 0.00 39.01 2.01
3348 4001 7.707035 ACAAAACAGTGAACAAACACAGTAAAA 59.293 29.630 0.00 0.00 39.01 1.52
3349 4002 7.631915 AAACAGTGAACAAACACAGTAAAAC 57.368 32.000 0.00 0.00 39.01 2.43
3350 4003 5.387279 ACAGTGAACAAACACAGTAAAACG 58.613 37.500 0.00 0.00 42.45 3.60
3351 4004 5.049267 ACAGTGAACAAACACAGTAAAACGT 60.049 36.000 0.00 0.00 42.45 3.99
3352 4005 5.282778 CAGTGAACAAACACAGTAAAACGTG 59.717 40.000 0.00 0.00 42.45 4.49
3353 4006 5.179742 AGTGAACAAACACAGTAAAACGTGA 59.820 36.000 0.00 0.00 42.45 4.35
3354 4007 5.282076 GTGAACAAACACAGTAAAACGTGAC 59.718 40.000 0.00 0.00 40.11 3.67
3355 4008 5.049612 TGAACAAACACAGTAAAACGTGACA 60.050 36.000 0.00 0.00 36.91 3.58
3356 4009 5.554822 ACAAACACAGTAAAACGTGACAT 57.445 34.783 0.00 0.00 36.91 3.06
3357 4010 5.328691 ACAAACACAGTAAAACGTGACATG 58.671 37.500 0.00 0.00 36.91 3.21
3358 4011 5.106475 ACAAACACAGTAAAACGTGACATGT 60.106 36.000 0.00 0.00 36.91 3.21
3359 4012 4.789095 ACACAGTAAAACGTGACATGTC 57.211 40.909 19.27 19.27 36.91 3.06
3360 4013 4.185394 ACACAGTAAAACGTGACATGTCA 58.815 39.130 24.56 24.56 36.91 3.58
3361 4014 4.814234 ACACAGTAAAACGTGACATGTCAT 59.186 37.500 30.10 16.87 42.18 3.06
3414 4067 5.171339 ACATACTTCCTCTGCTCACAAAT 57.829 39.130 0.00 0.00 0.00 2.32
3415 4068 6.299805 ACATACTTCCTCTGCTCACAAATA 57.700 37.500 0.00 0.00 0.00 1.40
3416 4069 6.109359 ACATACTTCCTCTGCTCACAAATAC 58.891 40.000 0.00 0.00 0.00 1.89
3417 4070 4.899352 ACTTCCTCTGCTCACAAATACT 57.101 40.909 0.00 0.00 0.00 2.12
3418 4071 4.826556 ACTTCCTCTGCTCACAAATACTC 58.173 43.478 0.00 0.00 0.00 2.59
3419 4072 3.895232 TCCTCTGCTCACAAATACTCC 57.105 47.619 0.00 0.00 0.00 3.85
3420 4073 2.501723 TCCTCTGCTCACAAATACTCCC 59.498 50.000 0.00 0.00 0.00 4.30
3421 4074 2.503356 CCTCTGCTCACAAATACTCCCT 59.497 50.000 0.00 0.00 0.00 4.20
3422 4075 3.431486 CCTCTGCTCACAAATACTCCCTC 60.431 52.174 0.00 0.00 0.00 4.30
3423 4076 2.501723 TCTGCTCACAAATACTCCCTCC 59.498 50.000 0.00 0.00 0.00 4.30
3424 4077 1.207089 TGCTCACAAATACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
3425 4078 1.207329 GCTCACAAATACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
3426 4079 2.738964 GCTCACAAATACTCCCTCCGTC 60.739 54.545 0.00 0.00 0.00 4.79
3427 4080 1.829222 TCACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
3428 4081 0.822164 ACAAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
3429 4082 1.108776 CAAATACTCCCTCCGTCCGA 58.891 55.000 0.00 0.00 0.00 4.55
3430 4083 1.479323 CAAATACTCCCTCCGTCCGAA 59.521 52.381 0.00 0.00 0.00 4.30
3431 4084 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3432 4085 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3433 4086 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3434 4087 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3435 4088 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3436 4089 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3437 4090 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3438 4091 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3439 4092 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3440 4093 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3441 4094 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3442 4095 3.581755 TCCGTCCGAAAATACTTGTCAG 58.418 45.455 0.00 0.00 0.00 3.51
3443 4096 3.256383 TCCGTCCGAAAATACTTGTCAGA 59.744 43.478 0.00 0.00 0.00 3.27
3444 4097 3.612860 CCGTCCGAAAATACTTGTCAGAG 59.387 47.826 0.00 0.00 0.00 3.35
3445 4098 3.612860 CGTCCGAAAATACTTGTCAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
3446 4099 4.617530 CGTCCGAAAATACTTGTCAGAGGA 60.618 45.833 0.00 0.00 0.00 3.71
3447 4100 5.235516 GTCCGAAAATACTTGTCAGAGGAA 58.764 41.667 0.00 0.00 0.00 3.36
3448 4101 5.875359 GTCCGAAAATACTTGTCAGAGGAAT 59.125 40.000 0.00 0.00 0.00 3.01
3449 4102 5.874810 TCCGAAAATACTTGTCAGAGGAATG 59.125 40.000 0.00 0.00 0.00 2.67
3450 4103 5.065218 CCGAAAATACTTGTCAGAGGAATGG 59.935 44.000 0.00 0.00 0.00 3.16
3451 4104 5.874810 CGAAAATACTTGTCAGAGGAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
3452 4105 6.540189 CGAAAATACTTGTCAGAGGAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
3453 4106 7.466455 CGAAAATACTTGTCAGAGGAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
3454 4107 5.965033 ATACTTGTCAGAGGAATGGATGT 57.035 39.130 0.00 0.00 0.00 3.06
3455 4108 7.437713 AATACTTGTCAGAGGAATGGATGTA 57.562 36.000 0.00 0.00 0.00 2.29
3456 4109 5.965033 ACTTGTCAGAGGAATGGATGTAT 57.035 39.130 0.00 0.00 0.00 2.29
3457 4110 5.923204 ACTTGTCAGAGGAATGGATGTATC 58.077 41.667 0.00 0.00 0.00 2.24
3458 4111 5.664908 ACTTGTCAGAGGAATGGATGTATCT 59.335 40.000 0.00 0.00 0.00 1.98
3459 4112 6.841229 ACTTGTCAGAGGAATGGATGTATCTA 59.159 38.462 0.00 0.00 0.00 1.98
3460 4113 6.907853 TGTCAGAGGAATGGATGTATCTAG 57.092 41.667 0.00 0.00 0.00 2.43
3461 4114 6.614657 TGTCAGAGGAATGGATGTATCTAGA 58.385 40.000 0.00 0.00 0.00 2.43
3462 4115 7.244558 TGTCAGAGGAATGGATGTATCTAGAT 58.755 38.462 10.73 10.73 0.00 1.98
3463 4116 7.178097 TGTCAGAGGAATGGATGTATCTAGATG 59.822 40.741 15.79 0.00 0.00 2.90
3464 4117 7.178274 GTCAGAGGAATGGATGTATCTAGATGT 59.822 40.741 15.79 1.25 0.00 3.06
3465 4118 8.394040 TCAGAGGAATGGATGTATCTAGATGTA 58.606 37.037 15.79 4.44 0.00 2.29
3466 4119 9.199645 CAGAGGAATGGATGTATCTAGATGTAT 57.800 37.037 15.79 9.11 0.00 2.29
3467 4120 9.781425 AGAGGAATGGATGTATCTAGATGTATT 57.219 33.333 15.79 6.57 0.00 1.89
3496 4149 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
3503 4156 9.415544 GATACATCCATTTTTATGCATTTCTCC 57.584 33.333 3.54 0.00 0.00 3.71
3504 4157 6.275335 ACATCCATTTTTATGCATTTCTCCG 58.725 36.000 3.54 0.00 0.00 4.63
3505 4158 6.096705 ACATCCATTTTTATGCATTTCTCCGA 59.903 34.615 3.54 0.00 0.00 4.55
3506 4159 5.890334 TCCATTTTTATGCATTTCTCCGAC 58.110 37.500 3.54 0.00 0.00 4.79
3507 4160 5.417266 TCCATTTTTATGCATTTCTCCGACA 59.583 36.000 3.54 0.00 0.00 4.35
3508 4161 6.071672 TCCATTTTTATGCATTTCTCCGACAA 60.072 34.615 3.54 0.00 0.00 3.18
3509 4162 6.254157 CCATTTTTATGCATTTCTCCGACAAG 59.746 38.462 3.54 0.00 0.00 3.16
3510 4163 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
3511 4164 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
3512 4165 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
3513 4166 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
3514 4167 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
3515 4168 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
3516 4169 4.394920 TGCATTTCTCCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
3517 4170 4.494199 GCATTTCTCCGACAAGTATTTCCG 60.494 45.833 0.00 0.00 0.00 4.30
3518 4171 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3519 4172 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3520 4173 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3521 4174 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3522 4175 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3523 4176 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3524 4177 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3525 4178 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3526 4179 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3527 4180 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3528 4181 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3529 4182 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3530 4183 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3531 4184 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3532 4185 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3533 4186 2.119655 CCGGACGGAGGGAGTACTG 61.120 68.421 4.40 0.00 37.50 2.74
3538 4191 3.410508 GGACGGAGGGAGTACTGTATAG 58.589 54.545 0.00 0.00 0.00 1.31
3588 4241 4.836825 ACATACAGACTGAAATGGGTGAG 58.163 43.478 10.08 0.00 0.00 3.51
3598 4251 0.667993 AATGGGTGAGCAAACACACG 59.332 50.000 9.99 0.00 45.88 4.49
3599 4252 0.465460 ATGGGTGAGCAAACACACGT 60.465 50.000 9.99 5.68 45.88 4.49
3600 4253 0.678366 TGGGTGAGCAAACACACGTT 60.678 50.000 9.99 0.00 45.88 3.99
3601 4254 0.454196 GGGTGAGCAAACACACGTTT 59.546 50.000 9.99 0.00 46.38 3.60
3602 4255 1.135228 GGGTGAGCAAACACACGTTTT 60.135 47.619 9.99 0.00 42.82 2.43
3603 4256 2.097791 GGGTGAGCAAACACACGTTTTA 59.902 45.455 9.99 0.00 42.82 1.52
3604 4257 3.243267 GGGTGAGCAAACACACGTTTTAT 60.243 43.478 9.99 0.00 42.82 1.40
3606 4259 4.801516 GGTGAGCAAACACACGTTTTATTT 59.198 37.500 9.99 0.00 42.82 1.40
3607 4260 5.051973 GGTGAGCAAACACACGTTTTATTTC 60.052 40.000 9.99 0.00 42.82 2.17
3608 4261 5.513495 GTGAGCAAACACACGTTTTATTTCA 59.487 36.000 0.00 0.00 42.82 2.69
3609 4262 6.034044 GTGAGCAAACACACGTTTTATTTCAA 59.966 34.615 0.00 0.00 42.82 2.69
3610 4263 6.754209 TGAGCAAACACACGTTTTATTTCAAT 59.246 30.769 0.00 0.00 42.82 2.57
3611 4264 7.915923 TGAGCAAACACACGTTTTATTTCAATA 59.084 29.630 0.00 0.00 42.82 1.90
3612 4265 8.810652 AGCAAACACACGTTTTATTTCAATAT 57.189 26.923 0.00 0.00 42.82 1.28
3613 4266 8.698854 AGCAAACACACGTTTTATTTCAATATG 58.301 29.630 0.00 0.00 42.82 1.78
3614 4267 7.949428 GCAAACACACGTTTTATTTCAATATGG 59.051 33.333 0.00 0.00 42.82 2.74
3615 4268 9.186323 CAAACACACGTTTTATTTCAATATGGA 57.814 29.630 0.00 0.00 42.82 3.41
3616 4269 8.736751 AACACACGTTTTATTTCAATATGGAC 57.263 30.769 0.00 0.00 28.09 4.02
3617 4270 8.106247 ACACACGTTTTATTTCAATATGGACT 57.894 30.769 0.00 0.00 0.00 3.85
3618 4271 9.221933 ACACACGTTTTATTTCAATATGGACTA 57.778 29.630 0.00 0.00 0.00 2.59
3619 4272 9.485591 CACACGTTTTATTTCAATATGGACTAC 57.514 33.333 0.00 0.00 0.00 2.73
3620 4273 9.221933 ACACGTTTTATTTCAATATGGACTACA 57.778 29.630 0.00 0.00 0.00 2.74
3629 4282 9.770097 ATTTCAATATGGACTACATACAGACTG 57.230 33.333 0.00 0.00 44.41 3.51
3630 4283 8.533569 TTCAATATGGACTACATACAGACTGA 57.466 34.615 10.08 0.00 44.41 3.41
3631 4284 8.533569 TCAATATGGACTACATACAGACTGAA 57.466 34.615 10.08 0.00 44.41 3.02
3632 4285 8.977412 TCAATATGGACTACATACAGACTGAAA 58.023 33.333 10.08 0.00 44.41 2.69
3633 4286 9.770097 CAATATGGACTACATACAGACTGAAAT 57.230 33.333 10.08 0.00 44.41 2.17
3634 4287 9.770097 AATATGGACTACATACAGACTGAAATG 57.230 33.333 10.08 14.00 44.41 2.32
3635 4288 5.977635 TGGACTACATACAGACTGAAATGG 58.022 41.667 10.08 3.93 0.00 3.16
3636 4289 5.104941 TGGACTACATACAGACTGAAATGGG 60.105 44.000 10.08 11.25 0.00 4.00
3637 4290 5.104900 GGACTACATACAGACTGAAATGGGT 60.105 44.000 10.08 13.80 0.00 4.51
3638 4291 5.734720 ACTACATACAGACTGAAATGGGTG 58.265 41.667 10.08 8.98 0.00 4.61
3639 4292 4.908601 ACATACAGACTGAAATGGGTGA 57.091 40.909 10.08 0.00 0.00 4.02
3640 4293 4.836825 ACATACAGACTGAAATGGGTGAG 58.163 43.478 10.08 0.00 0.00 3.51
3641 4294 2.191128 ACAGACTGAAATGGGTGAGC 57.809 50.000 10.08 0.00 0.00 4.26
3642 4295 1.421268 ACAGACTGAAATGGGTGAGCA 59.579 47.619 10.08 0.00 0.00 4.26
3643 4296 2.158623 ACAGACTGAAATGGGTGAGCAA 60.159 45.455 10.08 0.00 0.00 3.91
3644 4297 2.886523 CAGACTGAAATGGGTGAGCAAA 59.113 45.455 0.00 0.00 0.00 3.68
3645 4298 2.887152 AGACTGAAATGGGTGAGCAAAC 59.113 45.455 0.00 0.00 0.00 2.93
3646 4299 2.622942 GACTGAAATGGGTGAGCAAACA 59.377 45.455 0.00 0.00 0.00 2.83
3647 4300 2.362077 ACTGAAATGGGTGAGCAAACAC 59.638 45.455 0.00 0.00 39.70 3.32
3648 4301 2.361757 CTGAAATGGGTGAGCAAACACA 59.638 45.455 9.99 3.93 41.88 3.72
3649 4302 2.100584 TGAAATGGGTGAGCAAACACAC 59.899 45.455 9.99 7.34 43.57 3.82
3650 4303 0.667993 AATGGGTGAGCAAACACACG 59.332 50.000 9.99 0.00 45.88 4.49
3651 4304 0.465460 ATGGGTGAGCAAACACACGT 60.465 50.000 9.99 5.68 45.88 4.49
3927 4593 5.830991 ACTTTGGTGCTGTAACCTAATGAAA 59.169 36.000 3.82 0.00 41.16 2.69
4108 4807 5.818336 TCAAGAAGACGTTGGTTTGAATGTA 59.182 36.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.446570 GTGGGTGCATGCTGGCTC 61.447 66.667 20.33 9.68 34.04 4.70
2 3 3.933048 GAGTGGGTGCATGCTGGCT 62.933 63.158 20.33 9.63 34.04 4.75
3 4 3.446570 GAGTGGGTGCATGCTGGC 61.447 66.667 20.33 8.98 0.00 4.85
4 5 2.753043 GGAGTGGGTGCATGCTGG 60.753 66.667 20.33 0.00 0.00 4.85
5 6 2.753043 GGGAGTGGGTGCATGCTG 60.753 66.667 20.33 0.00 0.00 4.41
6 7 4.052518 GGGGAGTGGGTGCATGCT 62.053 66.667 20.33 0.00 0.00 3.79
7 8 4.052518 AGGGGAGTGGGTGCATGC 62.053 66.667 11.82 11.82 0.00 4.06
8 9 2.273449 GAGGGGAGTGGGTGCATG 59.727 66.667 0.00 0.00 0.00 4.06
9 10 3.017581 GGAGGGGAGTGGGTGCAT 61.018 66.667 0.00 0.00 0.00 3.96
21 22 2.383601 AATAAGGGGCACGGGAGGG 61.384 63.158 0.00 0.00 0.00 4.30
22 23 1.152963 CAATAAGGGGCACGGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
23 24 1.152963 CCAATAAGGGGCACGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
24 25 3.003230 CCAATAAGGGGCACGGGA 58.997 61.111 0.00 0.00 0.00 5.14
47 48 2.444706 TCTCGCCCCTCTCATGGG 60.445 66.667 0.00 0.00 46.56 4.00
48 49 2.818132 GTCTCGCCCCTCTCATGG 59.182 66.667 0.00 0.00 0.00 3.66
49 50 2.415010 CGTCTCGCCCCTCTCATG 59.585 66.667 0.00 0.00 0.00 3.07
60 61 4.003788 ACAAGTGGGGGCGTCTCG 62.004 66.667 0.00 0.00 0.00 4.04
61 62 2.358737 CACAAGTGGGGGCGTCTC 60.359 66.667 0.00 0.00 0.00 3.36
62 63 2.279037 AAACACAAGTGGGGGCGTCT 62.279 55.000 5.08 0.00 34.19 4.18
63 64 1.388837 AAAACACAAGTGGGGGCGTC 61.389 55.000 5.08 0.00 34.19 5.19
64 65 0.973496 AAAAACACAAGTGGGGGCGT 60.973 50.000 5.08 0.00 34.19 5.68
65 66 1.000717 CTAAAAACACAAGTGGGGGCG 60.001 52.381 5.08 0.00 34.19 6.13
66 67 2.312390 TCTAAAAACACAAGTGGGGGC 58.688 47.619 5.08 0.00 34.19 5.80
67 68 3.190535 CGATCTAAAAACACAAGTGGGGG 59.809 47.826 5.08 0.00 34.19 5.40
68 69 3.818773 ACGATCTAAAAACACAAGTGGGG 59.181 43.478 5.08 0.00 34.19 4.96
69 70 5.432885 AACGATCTAAAAACACAAGTGGG 57.567 39.130 5.08 0.00 34.19 4.61
70 71 7.749539 AAAAACGATCTAAAAACACAAGTGG 57.250 32.000 5.08 0.00 34.19 4.00
94 95 9.942850 ACTGAAATTGGAAGAAAAGAAAAAGAA 57.057 25.926 0.00 0.00 0.00 2.52
141 142 9.015367 TGAATTTAGTATTTCGTTGAAATCCCA 57.985 29.630 7.96 0.00 40.77 4.37
243 246 7.792374 TGTTGTAATTCATAGCCATCTTCTC 57.208 36.000 0.00 0.00 0.00 2.87
325 328 5.879223 TGAACATTTTGGTTTGCTGAACATT 59.121 32.000 6.01 0.00 40.13 2.71
326 329 5.426504 TGAACATTTTGGTTTGCTGAACAT 58.573 33.333 6.01 0.00 40.13 2.71
327 330 4.825422 TGAACATTTTGGTTTGCTGAACA 58.175 34.783 6.01 0.00 40.13 3.18
328 331 5.294060 ACATGAACATTTTGGTTTGCTGAAC 59.706 36.000 0.00 0.00 37.53 3.18
329 332 5.293814 CACATGAACATTTTGGTTTGCTGAA 59.706 36.000 0.00 0.00 0.00 3.02
330 333 4.809958 CACATGAACATTTTGGTTTGCTGA 59.190 37.500 0.00 0.00 0.00 4.26
331 334 4.571580 ACACATGAACATTTTGGTTTGCTG 59.428 37.500 0.00 0.00 0.00 4.41
332 335 4.768583 ACACATGAACATTTTGGTTTGCT 58.231 34.783 0.00 0.00 0.00 3.91
333 336 5.482686 AACACATGAACATTTTGGTTTGC 57.517 34.783 0.00 0.00 0.00 3.68
334 337 9.831737 TTTAAAACACATGAACATTTTGGTTTG 57.168 25.926 0.00 0.00 0.00 2.93
337 340 9.833182 GTTTTTAAAACACATGAACATTTTGGT 57.167 25.926 14.80 0.00 0.00 3.67
352 355 6.975197 TGCATCGATGAACAGTTTTTAAAACA 59.025 30.769 29.20 8.22 0.00 2.83
382 385 7.920151 TGAACAGTTTTTGAATCATCGAACAAT 59.080 29.630 0.00 0.00 0.00 2.71
383 386 7.254137 TGAACAGTTTTTGAATCATCGAACAA 58.746 30.769 0.00 0.00 0.00 2.83
385 388 7.858052 ATGAACAGTTTTTGAATCATCGAAC 57.142 32.000 0.00 0.00 34.26 3.95
389 392 8.679288 AATCGATGAACAGTTTTTGAATCATC 57.321 30.769 0.00 12.94 42.93 2.92
391 394 7.083858 GGAATCGATGAACAGTTTTTGAATCA 58.916 34.615 0.00 0.00 33.22 2.57
392 395 7.083858 TGGAATCGATGAACAGTTTTTGAATC 58.916 34.615 0.00 0.00 0.00 2.52
411 414 2.161609 AGTCGGCGAACATTTTGGAATC 59.838 45.455 12.92 0.00 0.00 2.52
412 415 2.159382 AGTCGGCGAACATTTTGGAAT 58.841 42.857 12.92 0.00 0.00 3.01
439 443 7.986889 AGCAAACCATTTCTTAAAACATGAACT 59.013 29.630 0.00 0.00 0.00 3.01
446 450 8.364129 TCAATCAGCAAACCATTTCTTAAAAC 57.636 30.769 0.00 0.00 0.00 2.43
448 452 8.954950 TTTCAATCAGCAAACCATTTCTTAAA 57.045 26.923 0.00 0.00 0.00 1.52
451 455 7.336427 TGTTTTTCAATCAGCAAACCATTTCTT 59.664 29.630 0.00 0.00 0.00 2.52
453 457 7.014092 TGTTTTTCAATCAGCAAACCATTTC 57.986 32.000 0.00 0.00 0.00 2.17
458 462 5.669122 CGAATGTTTTTCAATCAGCAAACC 58.331 37.500 0.00 0.00 0.00 3.27
599 604 8.859156 CCGTGAACATATTTCAAATTTTCGAAT 58.141 29.630 0.00 0.00 0.00 3.34
602 607 7.561237 ACCGTGAACATATTTCAAATTTTCG 57.439 32.000 0.00 0.00 0.00 3.46
604 609 9.319143 TCAAACCGTGAACATATTTCAAATTTT 57.681 25.926 0.00 0.00 31.51 1.82
678 684 6.202516 AGTGAACGTCTTTTCCAAATTTGA 57.797 33.333 19.86 3.14 0.00 2.69
679 685 7.979115 TTAGTGAACGTCTTTTCCAAATTTG 57.021 32.000 11.40 11.40 0.00 2.32
692 698 6.721321 TCCAGTTTTCATTTTAGTGAACGTC 58.279 36.000 0.00 0.00 37.80 4.34
694 700 7.979115 TTTCCAGTTTTCATTTTAGTGAACG 57.021 32.000 0.00 0.00 37.80 3.95
859 1359 1.374343 CCTGTACGGCGCTGTCTAGA 61.374 60.000 28.15 7.01 0.00 2.43
870 1370 0.748450 TTCCTATTCGGCCTGTACGG 59.252 55.000 0.00 0.00 0.00 4.02
872 1372 1.537562 CCGTTCCTATTCGGCCTGTAC 60.538 57.143 0.00 0.00 40.28 2.90
881 1381 2.178235 GGCACGGCCGTTCCTATTC 61.178 63.158 35.53 12.30 39.62 1.75
902 1402 4.618920 AACATATTCTAAGGTAGGCCGG 57.381 45.455 0.00 0.00 40.50 6.13
903 1403 6.937436 AAAAACATATTCTAAGGTAGGCCG 57.063 37.500 0.00 0.00 40.50 6.13
956 1458 1.605753 AAAGAGTTTTCGGGTCAGCC 58.394 50.000 0.00 0.00 0.00 4.85
1038 1545 0.386478 GCTTTTGCTTCTCCGCTGTG 60.386 55.000 0.00 0.00 43.35 3.66
1039 1546 1.518903 GGCTTTTGCTTCTCCGCTGT 61.519 55.000 0.00 0.00 46.54 4.40
1045 1566 1.205655 GGATTGGGGCTTTTGCTTCTC 59.794 52.381 0.00 0.00 46.54 2.87
1148 1669 4.308458 CGGTTGTCGGTGGCTGGA 62.308 66.667 0.00 0.00 34.75 3.86
1237 1758 0.586319 TCGAAACAAGCTTTGCGAGG 59.414 50.000 0.00 0.00 0.00 4.63
1250 1771 1.485066 TCCAGCTAGGGGAATCGAAAC 59.515 52.381 0.00 0.00 38.24 2.78
1317 1838 1.927710 GCGCACAGAAAAGAGGCAAAG 60.928 52.381 0.30 0.00 0.00 2.77
1518 2039 2.014857 GTTTAGGGTTTGGGCGATCTC 58.985 52.381 0.00 0.00 0.00 2.75
1521 2042 0.323999 GGGTTTAGGGTTTGGGCGAT 60.324 55.000 0.00 0.00 0.00 4.58
1522 2043 1.075305 GGGTTTAGGGTTTGGGCGA 59.925 57.895 0.00 0.00 0.00 5.54
1524 2045 0.902984 CTGGGGTTTAGGGTTTGGGC 60.903 60.000 0.00 0.00 0.00 5.36
1541 2062 3.306973 TGCGCATCGATCTAAAGAAACTG 59.693 43.478 5.66 0.00 0.00 3.16
1568 2089 2.025321 GGCCCAAGATTCCAGGTAAGAA 60.025 50.000 0.00 0.00 0.00 2.52
1588 2110 7.227512 AGTTCACTCAAAATAAGACAGACTTGG 59.772 37.037 0.00 0.00 39.38 3.61
1589 2111 8.147642 AGTTCACTCAAAATAAGACAGACTTG 57.852 34.615 0.00 0.00 39.38 3.16
1632 2154 8.141909 GTCATAACTAGGTTACACATCAGCATA 58.858 37.037 0.00 0.00 30.49 3.14
1645 2167 8.092687 AGTACAAATTCACGTCATAACTAGGTT 58.907 33.333 0.00 0.00 0.00 3.50
1698 2222 6.662414 ACATATTTTCACTACGGTCACATG 57.338 37.500 0.00 0.00 0.00 3.21
1701 2225 8.020861 TGTTAACATATTTTCACTACGGTCAC 57.979 34.615 3.59 0.00 0.00 3.67
1742 2266 1.364626 CCTCTGTTCTGCGGTCATGC 61.365 60.000 0.00 0.00 0.00 4.06
1743 2267 0.036952 ACCTCTGTTCTGCGGTCATG 60.037 55.000 0.00 0.00 0.00 3.07
1744 2268 0.687354 AACCTCTGTTCTGCGGTCAT 59.313 50.000 0.00 0.00 0.00 3.06
1745 2269 0.468226 AAACCTCTGTTCTGCGGTCA 59.532 50.000 0.00 0.00 32.15 4.02
1746 2270 1.149148 GAAACCTCTGTTCTGCGGTC 58.851 55.000 0.00 0.00 32.15 4.79
1747 2271 0.759346 AGAAACCTCTGTTCTGCGGT 59.241 50.000 0.00 0.00 32.15 5.68
1748 2272 1.001406 AGAGAAACCTCTGTTCTGCGG 59.999 52.381 0.00 0.00 39.43 5.69
1749 2273 2.447244 AGAGAAACCTCTGTTCTGCG 57.553 50.000 0.00 0.00 39.43 5.18
1757 2281 1.349357 GTGGCCTTCAGAGAAACCTCT 59.651 52.381 3.32 0.00 41.48 3.69
1758 2282 1.349357 AGTGGCCTTCAGAGAAACCTC 59.651 52.381 3.32 0.00 0.00 3.85
1759 2283 1.072965 CAGTGGCCTTCAGAGAAACCT 59.927 52.381 3.32 0.00 0.00 3.50
1760 2284 1.202818 ACAGTGGCCTTCAGAGAAACC 60.203 52.381 3.32 0.00 0.00 3.27
1761 2285 2.262423 ACAGTGGCCTTCAGAGAAAC 57.738 50.000 3.32 0.00 0.00 2.78
1762 2286 3.214328 GAAACAGTGGCCTTCAGAGAAA 58.786 45.455 3.32 0.00 0.00 2.52
1763 2287 2.806745 CGAAACAGTGGCCTTCAGAGAA 60.807 50.000 3.32 0.00 0.00 2.87
1764 2288 1.270305 CGAAACAGTGGCCTTCAGAGA 60.270 52.381 3.32 0.00 0.00 3.10
1765 2289 1.151668 CGAAACAGTGGCCTTCAGAG 58.848 55.000 3.32 0.00 0.00 3.35
1766 2290 0.884704 GCGAAACAGTGGCCTTCAGA 60.885 55.000 3.32 0.00 0.00 3.27
1767 2291 1.576421 GCGAAACAGTGGCCTTCAG 59.424 57.895 3.32 0.00 0.00 3.02
1768 2292 3.744559 GCGAAACAGTGGCCTTCA 58.255 55.556 3.32 0.00 0.00 3.02
1773 2297 2.159085 AGACTATAGGCGAAACAGTGGC 60.159 50.000 4.43 0.00 0.00 5.01
1774 2298 3.802948 AGACTATAGGCGAAACAGTGG 57.197 47.619 4.43 0.00 0.00 4.00
1775 2299 7.591006 TTTAAAGACTATAGGCGAAACAGTG 57.409 36.000 4.43 0.00 0.00 3.66
1776 2300 8.092687 TCTTTTAAAGACTATAGGCGAAACAGT 58.907 33.333 2.94 0.00 31.20 3.55
1777 2301 8.475331 TCTTTTAAAGACTATAGGCGAAACAG 57.525 34.615 2.94 1.73 31.20 3.16
1778 2302 9.444600 AATCTTTTAAAGACTATAGGCGAAACA 57.555 29.630 9.77 0.00 41.01 2.83
1781 2305 9.257651 GCTAATCTTTTAAAGACTATAGGCGAA 57.742 33.333 9.77 0.00 41.01 4.70
1782 2306 8.418662 TGCTAATCTTTTAAAGACTATAGGCGA 58.581 33.333 9.77 0.00 41.01 5.54
1783 2307 8.589335 TGCTAATCTTTTAAAGACTATAGGCG 57.411 34.615 9.77 0.00 41.01 5.52
1788 2312 9.046296 CGGTCATGCTAATCTTTTAAAGACTAT 57.954 33.333 9.77 2.58 41.01 2.12
1789 2313 7.011109 GCGGTCATGCTAATCTTTTAAAGACTA 59.989 37.037 9.77 2.57 41.01 2.59
1790 2314 6.183360 GCGGTCATGCTAATCTTTTAAAGACT 60.183 38.462 9.77 1.31 41.01 3.24
1791 2315 5.965918 GCGGTCATGCTAATCTTTTAAAGAC 59.034 40.000 9.77 0.00 41.01 3.01
1792 2316 5.645929 TGCGGTCATGCTAATCTTTTAAAGA 59.354 36.000 9.99 9.99 37.60 2.52
1793 2317 5.879237 TGCGGTCATGCTAATCTTTTAAAG 58.121 37.500 0.00 0.00 35.36 1.85
1794 2318 5.163663 CCTGCGGTCATGCTAATCTTTTAAA 60.164 40.000 0.00 0.00 35.36 1.52
1795 2319 4.335315 CCTGCGGTCATGCTAATCTTTTAA 59.665 41.667 0.00 0.00 35.36 1.52
1796 2320 3.876914 CCTGCGGTCATGCTAATCTTTTA 59.123 43.478 0.00 0.00 35.36 1.52
1797 2321 2.684881 CCTGCGGTCATGCTAATCTTTT 59.315 45.455 0.00 0.00 35.36 2.27
1798 2322 2.092968 TCCTGCGGTCATGCTAATCTTT 60.093 45.455 0.00 0.00 35.36 2.52
1799 2323 1.486310 TCCTGCGGTCATGCTAATCTT 59.514 47.619 0.00 0.00 35.36 2.40
1800 2324 1.069823 CTCCTGCGGTCATGCTAATCT 59.930 52.381 0.00 0.00 35.36 2.40
1801 2325 1.202580 ACTCCTGCGGTCATGCTAATC 60.203 52.381 0.00 0.00 35.36 1.75
1802 2326 0.833287 ACTCCTGCGGTCATGCTAAT 59.167 50.000 0.00 0.00 35.36 1.73
1803 2327 0.613260 AACTCCTGCGGTCATGCTAA 59.387 50.000 0.00 0.00 35.36 3.09
1804 2328 0.175760 GAACTCCTGCGGTCATGCTA 59.824 55.000 0.00 0.00 35.36 3.49
1805 2329 1.078848 GAACTCCTGCGGTCATGCT 60.079 57.895 0.00 0.00 35.36 3.79
1887 2411 8.804743 CGTATAAGACAAGACGAAATACACAAT 58.195 33.333 0.00 0.00 37.50 2.71
1894 2418 5.041940 GCTCCGTATAAGACAAGACGAAAT 58.958 41.667 0.00 0.00 37.50 2.17
1946 2470 5.181245 ACCTTGTGTTGTATGCATCAAGTAC 59.819 40.000 17.44 15.17 32.18 2.73
1974 2593 8.951954 CGAATGCTCGTTTTATATCTACTACT 57.048 34.615 0.00 0.00 40.33 2.57
2027 2646 1.581934 TGGAAGTCAAGCAAGTGTCG 58.418 50.000 0.00 0.00 0.00 4.35
2204 2824 3.159213 AGCACAACATCCATGGAGAAA 57.841 42.857 21.33 0.00 0.00 2.52
2207 2827 5.587388 AAATTAGCACAACATCCATGGAG 57.413 39.130 21.33 14.28 0.00 3.86
2212 2832 3.613671 CGGCAAAATTAGCACAACATCCA 60.614 43.478 5.33 0.00 0.00 3.41
2229 2849 2.224185 ACTAGTGTGACATGAACGGCAA 60.224 45.455 0.00 0.00 0.00 4.52
2254 2874 7.230849 AGTTGAAAATTCACTGCATTATCCA 57.769 32.000 0.00 0.00 36.83 3.41
2397 3017 7.925043 ATATGATTTCCTTCAGAGATGCATC 57.075 36.000 19.37 19.37 0.00 3.91
2473 3093 6.943981 TCACTAAACATACTCAATTATGCGC 58.056 36.000 0.00 0.00 33.37 6.09
2495 3115 9.445878 GAAGATCCATCAATATCTAGCATTTCA 57.554 33.333 0.00 0.00 32.17 2.69
2504 3124 6.008960 GCAAAGGGAAGATCCATCAATATCT 58.991 40.000 0.00 0.00 38.64 1.98
2541 3161 9.350951 ACTACCTAGAAAATTTTGCAACTACTT 57.649 29.630 8.47 0.00 0.00 2.24
2555 3175 8.147244 AGCTTCCAGATTAACTACCTAGAAAA 57.853 34.615 0.00 0.00 0.00 2.29
2675 3296 9.110502 GAAAATTGAACCGAGGATATTAGACTT 57.889 33.333 0.00 0.00 0.00 3.01
2923 3544 6.325028 CCTCAAACAGATATCCTCCAGAAGTA 59.675 42.308 0.00 0.00 0.00 2.24
3118 3743 6.257423 TGCAGAATGATAAACATAAACAGCG 58.743 36.000 0.00 0.00 39.69 5.18
3299 3929 2.773487 TGATGTGTTCGTTTAGTGGGG 58.227 47.619 0.00 0.00 0.00 4.96
3343 3996 8.722342 AAATAACATGACATGTCACGTTTTAC 57.278 30.769 36.28 7.00 42.42 2.01
3388 4041 1.067821 GAGCAGAGGAAGTATGTCCGG 59.932 57.143 0.00 0.00 43.03 5.14
3389 4042 1.751351 TGAGCAGAGGAAGTATGTCCG 59.249 52.381 0.00 0.00 43.03 4.79
3414 4067 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3415 4068 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3416 4069 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3417 4070 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3418 4071 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3419 4072 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3420 4073 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3421 4074 3.256383 TCTGACAAGTATTTTCGGACGGA 59.744 43.478 0.00 0.00 0.00 4.69
3422 4075 3.581755 TCTGACAAGTATTTTCGGACGG 58.418 45.455 0.00 0.00 0.00 4.79
3423 4076 3.612860 CCTCTGACAAGTATTTTCGGACG 59.387 47.826 0.00 0.00 0.00 4.79
3424 4077 4.817517 TCCTCTGACAAGTATTTTCGGAC 58.182 43.478 0.00 0.00 0.00 4.79
3425 4078 5.477607 TTCCTCTGACAAGTATTTTCGGA 57.522 39.130 0.00 0.00 0.00 4.55
3426 4079 5.065218 CCATTCCTCTGACAAGTATTTTCGG 59.935 44.000 0.00 0.00 0.00 4.30
3427 4080 5.874810 TCCATTCCTCTGACAAGTATTTTCG 59.125 40.000 0.00 0.00 0.00 3.46
3428 4081 7.337942 ACATCCATTCCTCTGACAAGTATTTTC 59.662 37.037 0.00 0.00 0.00 2.29
3429 4082 7.177878 ACATCCATTCCTCTGACAAGTATTTT 58.822 34.615 0.00 0.00 0.00 1.82
3430 4083 6.725364 ACATCCATTCCTCTGACAAGTATTT 58.275 36.000 0.00 0.00 0.00 1.40
3431 4084 6.319048 ACATCCATTCCTCTGACAAGTATT 57.681 37.500 0.00 0.00 0.00 1.89
3432 4085 5.965033 ACATCCATTCCTCTGACAAGTAT 57.035 39.130 0.00 0.00 0.00 2.12
3433 4086 6.841229 AGATACATCCATTCCTCTGACAAGTA 59.159 38.462 0.00 0.00 0.00 2.24
3434 4087 5.664908 AGATACATCCATTCCTCTGACAAGT 59.335 40.000 0.00 0.00 0.00 3.16
3435 4088 6.172136 AGATACATCCATTCCTCTGACAAG 57.828 41.667 0.00 0.00 0.00 3.16
3436 4089 7.069344 TCTAGATACATCCATTCCTCTGACAA 58.931 38.462 0.00 0.00 0.00 3.18
3437 4090 6.614657 TCTAGATACATCCATTCCTCTGACA 58.385 40.000 0.00 0.00 0.00 3.58
3438 4091 7.178274 ACATCTAGATACATCCATTCCTCTGAC 59.822 40.741 4.54 0.00 0.00 3.51
3439 4092 7.244558 ACATCTAGATACATCCATTCCTCTGA 58.755 38.462 4.54 0.00 0.00 3.27
3440 4093 7.479352 ACATCTAGATACATCCATTCCTCTG 57.521 40.000 4.54 0.00 0.00 3.35
3441 4094 9.781425 AATACATCTAGATACATCCATTCCTCT 57.219 33.333 4.54 0.00 0.00 3.69
3470 4123 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
3477 4130 9.415544 GGAGAAATGCATAAAAATGGATGTATC 57.584 33.333 0.00 0.00 32.82 2.24
3478 4131 8.084073 CGGAGAAATGCATAAAAATGGATGTAT 58.916 33.333 0.00 0.00 32.82 2.29
3479 4132 7.284261 TCGGAGAAATGCATAAAAATGGATGTA 59.716 33.333 0.00 0.00 32.82 2.29
3480 4133 6.096705 TCGGAGAAATGCATAAAAATGGATGT 59.903 34.615 0.00 0.00 32.82 3.06
3481 4134 6.418819 GTCGGAGAAATGCATAAAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
3482 4135 6.096705 TGTCGGAGAAATGCATAAAAATGGAT 59.903 34.615 0.00 0.00 39.69 3.41
3483 4136 5.417266 TGTCGGAGAAATGCATAAAAATGGA 59.583 36.000 0.00 0.00 39.69 3.41
3484 4137 5.649557 TGTCGGAGAAATGCATAAAAATGG 58.350 37.500 0.00 0.00 39.69 3.16
3485 4138 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
3486 4139 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
3487 4140 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
3488 4141 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
3489 4142 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
3490 4143 7.201696 GGAAATACTTGTCGGAGAAATGCATAA 60.202 37.037 0.00 0.00 39.69 1.90
3491 4144 6.260050 GGAAATACTTGTCGGAGAAATGCATA 59.740 38.462 0.00 0.00 39.69 3.14
3492 4145 5.066505 GGAAATACTTGTCGGAGAAATGCAT 59.933 40.000 0.00 0.00 39.69 3.96
3493 4146 4.394920 GGAAATACTTGTCGGAGAAATGCA 59.605 41.667 0.00 0.00 39.69 3.96
3494 4147 4.494199 CGGAAATACTTGTCGGAGAAATGC 60.494 45.833 0.00 0.00 39.69 3.56
3495 4148 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3496 4149 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3497 4150 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3498 4151 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3499 4152 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3500 4153 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3501 4154 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3502 4155 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3503 4156 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3504 4157 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3505 4158 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3506 4159 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3507 4160 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3508 4161 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3509 4162 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3510 4163 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3511 4164 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3512 4165 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3513 4166 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3514 4167 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3515 4168 2.119655 CAGTACTCCCTCCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
3516 4169 0.107508 TACAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
3517 4170 2.361643 ATACAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3518 4171 3.072184 TCCTATACAGTACTCCCTCCGTC 59.928 52.174 0.00 0.00 0.00 4.79
3519 4172 3.051581 TCCTATACAGTACTCCCTCCGT 58.948 50.000 0.00 0.00 0.00 4.69
3520 4173 3.784511 TCCTATACAGTACTCCCTCCG 57.215 52.381 0.00 0.00 0.00 4.63
3521 4174 5.000570 ACATCCTATACAGTACTCCCTCC 57.999 47.826 0.00 0.00 0.00 4.30
3522 4175 6.980416 AAACATCCTATACAGTACTCCCTC 57.020 41.667 0.00 0.00 0.00 4.30
3523 4176 6.099845 CCAAAACATCCTATACAGTACTCCCT 59.900 42.308 0.00 0.00 0.00 4.20
3524 4177 6.099269 TCCAAAACATCCTATACAGTACTCCC 59.901 42.308 0.00 0.00 0.00 4.30
3525 4178 7.120923 TCCAAAACATCCTATACAGTACTCC 57.879 40.000 0.00 0.00 0.00 3.85
3538 4191 9.696917 GTCCATATTGAAATATCCAAAACATCC 57.303 33.333 0.00 0.00 29.35 3.51
3603 4256 9.770097 CAGTCTGTATGTAGTCCATATTGAAAT 57.230 33.333 0.00 0.00 38.29 2.17
3604 4257 8.977412 TCAGTCTGTATGTAGTCCATATTGAAA 58.023 33.333 0.00 0.00 38.29 2.69
3606 4259 8.533569 TTCAGTCTGTATGTAGTCCATATTGA 57.466 34.615 0.00 0.00 38.29 2.57
3607 4260 9.770097 ATTTCAGTCTGTATGTAGTCCATATTG 57.230 33.333 0.00 0.00 38.29 1.90
3608 4261 9.770097 CATTTCAGTCTGTATGTAGTCCATATT 57.230 33.333 0.00 0.00 38.29 1.28
3609 4262 8.370940 CCATTTCAGTCTGTATGTAGTCCATAT 58.629 37.037 0.00 0.00 38.29 1.78
3610 4263 7.202001 CCCATTTCAGTCTGTATGTAGTCCATA 60.202 40.741 0.00 0.00 34.86 2.74
3611 4264 6.408548 CCCATTTCAGTCTGTATGTAGTCCAT 60.409 42.308 0.00 0.00 37.58 3.41
3612 4265 5.104941 CCCATTTCAGTCTGTATGTAGTCCA 60.105 44.000 0.00 0.00 0.00 4.02
3613 4266 5.104900 ACCCATTTCAGTCTGTATGTAGTCC 60.105 44.000 0.00 0.00 0.00 3.85
3614 4267 5.812642 CACCCATTTCAGTCTGTATGTAGTC 59.187 44.000 0.00 0.00 0.00 2.59
3615 4268 5.483937 TCACCCATTTCAGTCTGTATGTAGT 59.516 40.000 0.00 3.22 0.00 2.73
3616 4269 5.977635 TCACCCATTTCAGTCTGTATGTAG 58.022 41.667 0.00 2.69 0.00 2.74
3617 4270 5.626809 GCTCACCCATTTCAGTCTGTATGTA 60.627 44.000 0.00 0.00 0.00 2.29
3618 4271 4.836825 CTCACCCATTTCAGTCTGTATGT 58.163 43.478 0.00 0.00 0.00 2.29
3619 4272 3.624861 GCTCACCCATTTCAGTCTGTATG 59.375 47.826 0.00 5.42 0.00 2.39
3620 4273 3.264193 TGCTCACCCATTTCAGTCTGTAT 59.736 43.478 0.00 0.00 0.00 2.29
3621 4274 2.637382 TGCTCACCCATTTCAGTCTGTA 59.363 45.455 0.00 0.00 0.00 2.74
3622 4275 1.421268 TGCTCACCCATTTCAGTCTGT 59.579 47.619 0.00 0.00 0.00 3.41
3623 4276 2.189594 TGCTCACCCATTTCAGTCTG 57.810 50.000 0.00 0.00 0.00 3.51
3624 4277 2.887152 GTTTGCTCACCCATTTCAGTCT 59.113 45.455 0.00 0.00 0.00 3.24
3625 4278 2.622942 TGTTTGCTCACCCATTTCAGTC 59.377 45.455 0.00 0.00 0.00 3.51
3626 4279 2.362077 GTGTTTGCTCACCCATTTCAGT 59.638 45.455 0.00 0.00 32.81 3.41
3627 4280 2.361757 TGTGTTTGCTCACCCATTTCAG 59.638 45.455 5.22 0.00 37.51 3.02
3628 4281 2.100584 GTGTGTTTGCTCACCCATTTCA 59.899 45.455 5.22 0.00 37.51 2.69
3629 4282 2.742774 GTGTGTTTGCTCACCCATTTC 58.257 47.619 5.22 0.00 37.51 2.17
3630 4283 1.066908 CGTGTGTTTGCTCACCCATTT 59.933 47.619 5.22 0.00 37.51 2.32
3631 4284 0.667993 CGTGTGTTTGCTCACCCATT 59.332 50.000 5.22 0.00 37.51 3.16
3632 4285 0.465460 ACGTGTGTTTGCTCACCCAT 60.465 50.000 0.00 0.00 37.51 4.00
3633 4286 0.678366 AACGTGTGTTTGCTCACCCA 60.678 50.000 0.00 0.00 37.51 4.51
3634 4287 0.454196 AAACGTGTGTTTGCTCACCC 59.546 50.000 0.00 0.00 46.28 4.61
3643 4296 4.989797 TCGGATGTACATAAAACGTGTGTT 59.010 37.500 8.71 0.00 40.98 3.32
3644 4297 4.558178 TCGGATGTACATAAAACGTGTGT 58.442 39.130 8.71 0.00 0.00 3.72
3645 4298 5.712217 ATCGGATGTACATAAAACGTGTG 57.288 39.130 8.71 0.00 0.00 3.82
3646 4299 5.870433 TGAATCGGATGTACATAAAACGTGT 59.130 36.000 8.71 4.46 0.00 4.49
3647 4300 6.182634 GTGAATCGGATGTACATAAAACGTG 58.817 40.000 8.71 0.00 0.00 4.49
3648 4301 5.870433 TGTGAATCGGATGTACATAAAACGT 59.130 36.000 8.71 0.00 0.00 3.99
3649 4302 6.339194 TGTGAATCGGATGTACATAAAACG 57.661 37.500 8.71 11.24 0.00 3.60
3825 4491 3.288809 TGTCTCAGTCGACTGTGAATG 57.711 47.619 37.86 25.26 44.76 2.67
3927 4593 7.339466 GGTCACTCAAGTGTATAATTTCCCAAT 59.661 37.037 9.82 0.00 45.76 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.