Multiple sequence alignment - TraesCS1B01G253900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G253900 chr1B 100.000 8974 0 0 1 8974 448135074 448144047 0.000000e+00 16572.0
1 TraesCS1B01G253900 chr1B 89.711 311 31 1 332 641 448118235 448118545 6.530000e-106 396.0
2 TraesCS1B01G253900 chr1A 94.907 4143 140 28 3012 7101 430586219 430590343 0.000000e+00 6416.0
3 TraesCS1B01G253900 chr1A 95.505 2247 83 8 651 2892 430583985 430586218 0.000000e+00 3574.0
4 TraesCS1B01G253900 chr1A 87.712 1416 84 22 7100 8479 430590424 430591785 0.000000e+00 1568.0
5 TraesCS1B01G253900 chr1A 88.152 422 28 6 8481 8887 430591838 430592252 4.870000e-132 483.0
6 TraesCS1B01G253900 chr1D 93.133 2534 119 23 3012 5510 332925321 332927834 0.000000e+00 3664.0
7 TraesCS1B01G253900 chr1D 92.763 2280 95 21 651 2892 332923073 332925320 0.000000e+00 3232.0
8 TraesCS1B01G253900 chr1D 93.644 1652 73 15 5507 7142 332927995 332929630 0.000000e+00 2440.0
9 TraesCS1B01G253900 chr1D 92.194 1358 65 11 7141 8479 332929724 332931059 0.000000e+00 1882.0
10 TraesCS1B01G253900 chr1D 84.273 337 30 12 8488 8805 332931111 332931443 3.150000e-79 307.0
11 TraesCS1B01G253900 chr6D 92.260 646 48 2 1 645 442259396 442258752 0.000000e+00 915.0
12 TraesCS1B01G253900 chr6D 91.925 322 23 2 323 641 442264078 442263757 1.780000e-121 448.0
13 TraesCS1B01G253900 chr7B 87.771 646 70 8 1 641 224834389 224835030 0.000000e+00 747.0
14 TraesCS1B01G253900 chr6B 87.136 653 69 10 1 641 255195314 255195963 0.000000e+00 726.0
15 TraesCS1B01G253900 chr6B 84.193 601 80 12 1 594 561677185 561677777 3.640000e-158 569.0
16 TraesCS1B01G253900 chr4B 86.781 643 81 4 1 641 258647257 258647897 0.000000e+00 713.0
17 TraesCS1B01G253900 chr4B 85.942 313 39 4 332 641 171615724 171615414 6.720000e-86 329.0
18 TraesCS1B01G253900 chr6A 86.970 637 70 8 1 625 23583971 23584606 0.000000e+00 704.0
19 TraesCS1B01G253900 chr6A 94.118 68 4 0 2914 2981 614480552 614480619 4.430000e-18 104.0
20 TraesCS1B01G253900 chr6A 95.455 44 1 1 2977 3019 37399491 37399534 1.620000e-07 69.4
21 TraesCS1B01G253900 chr2A 84.859 601 77 7 1 589 56890746 56890148 2.160000e-165 593.0
22 TraesCS1B01G253900 chr2A 84.526 601 81 5 1 590 56876413 56877012 1.300000e-162 584.0
23 TraesCS1B01G253900 chr7D 80.556 648 116 10 1 641 518883819 518884463 2.910000e-134 490.0
24 TraesCS1B01G253900 chr3D 80.892 314 59 1 7667 7980 590941554 590941866 6.960000e-61 246.0
25 TraesCS1B01G253900 chr3D 92.523 107 5 3 2912 3017 8297113 8297217 5.610000e-32 150.0
26 TraesCS1B01G253900 chr3A 80.892 314 59 1 7667 7980 721349809 721350121 6.960000e-61 246.0
27 TraesCS1B01G253900 chr3A 92.453 106 7 1 2912 3017 610452866 610452762 5.610000e-32 150.0
28 TraesCS1B01G253900 chrUn 94.340 106 4 1 2912 3017 374044222 374044325 2.590000e-35 161.0
29 TraesCS1B01G253900 chr2D 94.340 106 4 1 2912 3017 4324411 4324308 2.590000e-35 161.0
30 TraesCS1B01G253900 chr2D 94.340 106 4 1 2912 3017 4349610 4349507 2.590000e-35 161.0
31 TraesCS1B01G253900 chr2D 94.340 106 4 1 2912 3017 4381135 4381032 2.590000e-35 161.0
32 TraesCS1B01G253900 chr2D 92.453 106 7 1 2912 3017 391805207 391805311 5.610000e-32 150.0
33 TraesCS1B01G253900 chr5A 91.589 107 8 1 2912 3018 509995531 509995636 7.260000e-31 147.0
34 TraesCS1B01G253900 chr4A 100.000 31 0 0 8854 8884 568199286 568199316 3.500000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G253900 chr1B 448135074 448144047 8973 False 16572.00 16572 100.0000 1 8974 1 chr1B.!!$F2 8973
1 TraesCS1B01G253900 chr1A 430583985 430592252 8267 False 3010.25 6416 91.5690 651 8887 4 chr1A.!!$F1 8236
2 TraesCS1B01G253900 chr1D 332923073 332931443 8370 False 2305.00 3664 91.2014 651 8805 5 chr1D.!!$F1 8154
3 TraesCS1B01G253900 chr6D 442258752 442259396 644 True 915.00 915 92.2600 1 645 1 chr6D.!!$R1 644
4 TraesCS1B01G253900 chr7B 224834389 224835030 641 False 747.00 747 87.7710 1 641 1 chr7B.!!$F1 640
5 TraesCS1B01G253900 chr6B 255195314 255195963 649 False 726.00 726 87.1360 1 641 1 chr6B.!!$F1 640
6 TraesCS1B01G253900 chr6B 561677185 561677777 592 False 569.00 569 84.1930 1 594 1 chr6B.!!$F2 593
7 TraesCS1B01G253900 chr4B 258647257 258647897 640 False 713.00 713 86.7810 1 641 1 chr4B.!!$F1 640
8 TraesCS1B01G253900 chr6A 23583971 23584606 635 False 704.00 704 86.9700 1 625 1 chr6A.!!$F1 624
9 TraesCS1B01G253900 chr2A 56890148 56890746 598 True 593.00 593 84.8590 1 589 1 chr2A.!!$R1 588
10 TraesCS1B01G253900 chr2A 56876413 56877012 599 False 584.00 584 84.5260 1 590 1 chr2A.!!$F1 589
11 TraesCS1B01G253900 chr7D 518883819 518884463 644 False 490.00 490 80.5560 1 641 1 chr7D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.100682 TTTAGCAACGTTGGCGCAAA 59.899 45.000 28.33 19.88 42.83 3.68 F
1043 1069 0.036388 AAGGTACACACATGCCTCGG 60.036 55.000 0.00 0.00 0.00 4.63 F
2158 2223 0.534203 TGTTCCTTTGAGTGGTCCGC 60.534 55.000 0.00 0.00 0.00 5.54 F
2978 3045 1.193323 TATTTGCATGTTGGCCTGGG 58.807 50.000 3.32 0.00 0.00 4.45 F
3484 3554 0.654683 GTTCGTCATCTGATGCTGCC 59.345 55.000 12.78 0.50 0.00 4.85 F
4467 4560 1.351017 TCATTTCTCCCCGTTGCTTCT 59.649 47.619 0.00 0.00 0.00 2.85 F
4663 4764 2.414994 ACAGAGGATGCAAGTGGATG 57.585 50.000 0.00 0.00 0.00 3.51 F
4793 4895 2.912956 ACAAGTGACAGTGATATGGGGT 59.087 45.455 0.00 0.00 0.00 4.95 F
6415 6715 2.346766 TCTGCCTTTTCAACTCTGCA 57.653 45.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 1903 1.821216 AAGGCACCAAACTGTATCCG 58.179 50.000 0.00 0.0 0.00 4.18 R
2959 3026 1.193323 CCCAGGCCAACATGCAAATA 58.807 50.000 5.01 0.0 0.00 1.40 R
3227 3295 1.001487 CGCAACAGCCTGTTTCATCAA 60.001 47.619 7.51 0.0 38.77 2.57 R
4946 5050 1.936547 CCTCGAGCATTAACAGGAAGC 59.063 52.381 6.99 0.0 0.00 3.86 R
5341 5453 0.881796 GCACAAAGGAACTAGGCACC 59.118 55.000 0.00 0.0 38.49 5.01 R
5709 6003 0.527113 CACAAATCAATCAGCCGCCA 59.473 50.000 0.00 0.0 0.00 5.69 R
5782 6076 1.550524 AGAACTCGGTGCTATTGCTCA 59.449 47.619 0.00 0.0 40.48 4.26 R
6724 7034 0.392193 GGCTCCTCAGTGTGATGGTG 60.392 60.000 0.00 0.0 0.00 4.17 R
8303 8833 0.251474 AGCTGCAGGCAAGAAATCCA 60.251 50.000 17.12 0.0 44.79 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.317160 ACACTCGCAAGTTCATCCGA 59.683 50.000 0.00 0.00 31.71 4.55
132 133 0.523072 CAACCCAACTCTTCCGCATG 59.477 55.000 0.00 0.00 0.00 4.06
139 140 2.386661 ACTCTTCCGCATGTTACTGG 57.613 50.000 0.00 0.00 0.00 4.00
185 186 0.100682 TTTAGCAACGTTGGCGCAAA 59.899 45.000 28.33 19.88 42.83 3.68
451 464 4.308458 CTCGTCACCGGCCCACAA 62.308 66.667 0.00 0.00 33.95 3.33
454 467 2.033448 GTCACCGGCCCACAATGA 59.967 61.111 0.00 0.00 0.00 2.57
517 530 1.218047 CGAAGACCCGAGCATCCAA 59.782 57.895 0.00 0.00 0.00 3.53
526 539 1.202734 CCGAGCATCCAATGGATCACT 60.203 52.381 12.63 12.67 40.98 3.41
574 596 2.367947 ATCTTCCTCCCCTGTTCCTT 57.632 50.000 0.00 0.00 0.00 3.36
575 597 2.133858 TCTTCCTCCCCTGTTCCTTT 57.866 50.000 0.00 0.00 0.00 3.11
596 622 2.094182 TCCCAATTCGTGTACTCTGCTC 60.094 50.000 0.00 0.00 0.00 4.26
597 623 2.353704 CCCAATTCGTGTACTCTGCTCA 60.354 50.000 0.00 0.00 0.00 4.26
605 631 3.549019 CGTGTACTCTGCTCATAATCGCT 60.549 47.826 0.00 0.00 0.00 4.93
627 653 6.313252 GCTACAGTACTACCGAGCAATATAC 58.687 44.000 0.00 0.00 0.00 1.47
641 667 7.423199 CGAGCAATATACCACTACTCTTACAA 58.577 38.462 0.00 0.00 0.00 2.41
642 668 8.082852 CGAGCAATATACCACTACTCTTACAAT 58.917 37.037 0.00 0.00 0.00 2.71
643 669 9.197694 GAGCAATATACCACTACTCTTACAATG 57.802 37.037 0.00 0.00 0.00 2.82
644 670 8.924303 AGCAATATACCACTACTCTTACAATGA 58.076 33.333 0.00 0.00 0.00 2.57
645 671 9.542462 GCAATATACCACTACTCTTACAATGAA 57.458 33.333 0.00 0.00 0.00 2.57
647 673 9.765795 AATATACCACTACTCTTACAATGAAGC 57.234 33.333 0.00 0.00 0.00 3.86
648 674 5.483685 ACCACTACTCTTACAATGAAGCA 57.516 39.130 0.00 0.00 0.00 3.91
649 675 5.238583 ACCACTACTCTTACAATGAAGCAC 58.761 41.667 0.00 0.00 0.00 4.40
655 681 0.521291 TTACAATGAAGCACGCCTGC 59.479 50.000 0.00 0.00 44.63 4.85
809 835 2.227036 CCAGGGTCCCACTGAAGCT 61.227 63.158 11.55 0.00 38.20 3.74
1036 1062 1.608025 CCGCACTGAAGGTACACACAT 60.608 52.381 0.00 0.00 0.00 3.21
1043 1069 0.036388 AAGGTACACACATGCCTCGG 60.036 55.000 0.00 0.00 0.00 4.63
1093 1121 1.980844 AGGGTAGGTTTCTGCCGTC 59.019 57.895 0.00 0.00 45.30 4.79
1113 1141 1.605753 GGATCACCCGGAATTTAGGC 58.394 55.000 0.73 0.00 0.00 3.93
1116 1144 2.818751 TCACCCGGAATTTAGGCAAT 57.181 45.000 0.73 0.00 0.00 3.56
1155 1183 1.856265 GCGGAGGGTTCAGTTGCTTG 61.856 60.000 0.00 0.00 0.00 4.01
1228 1256 1.671166 GGGATTTTGGTTTGCGCCT 59.329 52.632 4.18 0.00 0.00 5.52
1231 1259 2.217750 GGATTTTGGTTTGCGCCTTTT 58.782 42.857 4.18 0.00 0.00 2.27
1305 1333 5.629020 CGGTGTGTATTTCTGTTTGATTTGG 59.371 40.000 0.00 0.00 0.00 3.28
1390 1418 4.884744 TGCTGATCCTGTAGTCTTAGACTC 59.115 45.833 18.98 10.87 42.40 3.36
1563 1593 6.879458 AGAGTTGCAATACGGTTTCTAATCTT 59.121 34.615 0.59 0.00 0.00 2.40
1845 1886 6.759497 AATAGTACTGAAAACCTTGGATGC 57.241 37.500 5.39 0.00 0.00 3.91
1862 1903 5.541845 TGGATGCTATATGTTGTGTAGAGC 58.458 41.667 0.00 0.00 37.02 4.09
1863 1904 4.623167 GGATGCTATATGTTGTGTAGAGCG 59.377 45.833 0.00 0.00 38.80 5.03
2050 2093 4.339530 TCATTGAAACAACCCGTGATTTCA 59.660 37.500 0.00 0.00 36.41 2.69
2084 2127 5.692204 GTCTATCGCTGCTGTTAATACATGT 59.308 40.000 2.69 2.69 32.86 3.21
2091 2155 6.562825 CGCTGCTGTTAATACATGTCATACTG 60.563 42.308 0.00 2.55 32.86 2.74
2124 2189 9.595823 TTATAAAATGTCTACCAGCAGTACTTC 57.404 33.333 0.00 0.00 0.00 3.01
2158 2223 0.534203 TGTTCCTTTGAGTGGTCCGC 60.534 55.000 0.00 0.00 0.00 5.54
2496 2561 7.748683 CACACATGTGTTTAATGTACATACACC 59.251 37.037 28.64 15.19 42.83 4.16
2594 2659 1.933181 TGGAAGCGCAAGTATGAATCG 59.067 47.619 11.47 0.00 41.68 3.34
2719 2785 7.096803 GCAAAACATCTTTTTGTCGTATTTCGA 60.097 33.333 10.33 0.00 41.15 3.71
2783 2849 2.305635 TCAGCCTCCATTGTCTTAGCAA 59.694 45.455 0.00 0.00 0.00 3.91
2940 3007 9.704098 GCTAATACACTGTTTTAGCAGAAATAC 57.296 33.333 26.71 6.58 45.44 1.89
2943 3010 9.502091 AATACACTGTTTTAGCAGAAATACTCA 57.498 29.630 0.39 0.00 39.62 3.41
2944 3011 7.426929 ACACTGTTTTAGCAGAAATACTCAG 57.573 36.000 0.39 0.00 39.62 3.35
2945 3012 6.073003 ACACTGTTTTAGCAGAAATACTCAGC 60.073 38.462 0.39 0.00 39.62 4.26
2946 3013 5.120830 ACTGTTTTAGCAGAAATACTCAGCG 59.879 40.000 0.39 0.00 41.30 5.18
2947 3014 4.994852 TGTTTTAGCAGAAATACTCAGCGT 59.005 37.500 0.00 0.00 41.30 5.07
2948 3015 5.120208 TGTTTTAGCAGAAATACTCAGCGTC 59.880 40.000 0.00 0.00 41.30 5.19
2949 3016 2.301577 AGCAGAAATACTCAGCGTCC 57.698 50.000 0.00 0.00 41.30 4.79
2950 3017 1.827969 AGCAGAAATACTCAGCGTCCT 59.172 47.619 0.00 0.00 41.30 3.85
2951 3018 3.024547 AGCAGAAATACTCAGCGTCCTA 58.975 45.455 0.00 0.00 41.30 2.94
2952 3019 3.067461 AGCAGAAATACTCAGCGTCCTAG 59.933 47.826 0.00 0.00 41.30 3.02
2953 3020 3.181485 GCAGAAATACTCAGCGTCCTAGT 60.181 47.826 0.00 0.00 0.00 2.57
2954 3021 4.355437 CAGAAATACTCAGCGTCCTAGTG 58.645 47.826 0.00 0.00 0.00 2.74
2955 3022 3.381908 AGAAATACTCAGCGTCCTAGTGG 59.618 47.826 0.00 0.00 0.00 4.00
2956 3023 2.730934 ATACTCAGCGTCCTAGTGGA 57.269 50.000 0.00 0.00 40.69 4.02
2957 3024 2.502142 TACTCAGCGTCCTAGTGGAA 57.498 50.000 0.00 0.00 45.18 3.53
2958 3025 1.629043 ACTCAGCGTCCTAGTGGAAA 58.371 50.000 0.00 0.00 45.18 3.13
2959 3026 2.180276 ACTCAGCGTCCTAGTGGAAAT 58.820 47.619 0.00 0.00 45.18 2.17
2960 3027 3.362706 ACTCAGCGTCCTAGTGGAAATA 58.637 45.455 0.00 0.00 45.18 1.40
2961 3028 3.961408 ACTCAGCGTCCTAGTGGAAATAT 59.039 43.478 0.00 0.00 45.18 1.28
2962 3029 4.406003 ACTCAGCGTCCTAGTGGAAATATT 59.594 41.667 0.00 0.00 45.18 1.28
2963 3030 5.104900 ACTCAGCGTCCTAGTGGAAATATTT 60.105 40.000 0.00 0.00 45.18 1.40
2964 3031 5.116180 TCAGCGTCCTAGTGGAAATATTTG 58.884 41.667 5.17 0.00 45.18 2.32
2965 3032 3.877508 AGCGTCCTAGTGGAAATATTTGC 59.122 43.478 12.39 12.39 45.18 3.68
2966 3033 3.625764 GCGTCCTAGTGGAAATATTTGCA 59.374 43.478 17.38 17.38 45.18 4.08
2967 3034 4.275936 GCGTCCTAGTGGAAATATTTGCAT 59.724 41.667 22.97 14.85 45.18 3.96
2968 3035 5.751680 CGTCCTAGTGGAAATATTTGCATG 58.248 41.667 22.97 15.96 45.18 4.06
2969 3036 5.296780 CGTCCTAGTGGAAATATTTGCATGT 59.703 40.000 22.97 16.24 45.18 3.21
2970 3037 6.183360 CGTCCTAGTGGAAATATTTGCATGTT 60.183 38.462 22.97 14.78 45.18 2.71
2971 3038 6.974622 GTCCTAGTGGAAATATTTGCATGTTG 59.025 38.462 22.97 14.54 45.18 3.33
2972 3039 6.096705 TCCTAGTGGAAATATTTGCATGTTGG 59.903 38.462 22.97 20.83 40.59 3.77
2973 3040 4.506758 AGTGGAAATATTTGCATGTTGGC 58.493 39.130 22.97 10.75 40.59 4.52
2974 3041 3.622612 GTGGAAATATTTGCATGTTGGCC 59.377 43.478 22.97 7.00 40.59 5.36
2975 3042 3.518705 TGGAAATATTTGCATGTTGGCCT 59.481 39.130 17.38 0.00 33.44 5.19
2976 3043 3.872771 GGAAATATTTGCATGTTGGCCTG 59.127 43.478 14.18 0.00 0.00 4.85
2977 3044 3.547054 AATATTTGCATGTTGGCCTGG 57.453 42.857 3.32 0.00 0.00 4.45
2978 3045 1.193323 TATTTGCATGTTGGCCTGGG 58.807 50.000 3.32 0.00 0.00 4.45
2979 3046 2.187896 ATTTGCATGTTGGCCTGGGC 62.188 55.000 14.23 14.23 41.06 5.36
3227 3295 2.118513 ACTGGAGACTGCCTCGGT 59.881 61.111 0.00 0.00 42.89 4.69
3405 3475 2.954989 TGCAGCTGTTGGTTTACATGAA 59.045 40.909 16.64 0.00 0.00 2.57
3462 3532 8.929260 TGATGCTAAAATCAACTCATATCCAT 57.071 30.769 0.00 0.00 33.63 3.41
3469 3539 7.488187 AAATCAACTCATATCCATCTGTTCG 57.512 36.000 0.00 0.00 0.00 3.95
3484 3554 0.654683 GTTCGTCATCTGATGCTGCC 59.345 55.000 12.78 0.50 0.00 4.85
3531 3601 5.048013 GTCACCCAGATTAACAAAAGGAAGG 60.048 44.000 0.00 0.00 0.00 3.46
3674 3761 6.901887 GTCTATGACATTTTGCTTGTGATACG 59.098 38.462 0.00 0.00 32.09 3.06
3688 3775 6.677920 GCTTGTGATACGCAAATAACAGGAAT 60.678 38.462 0.00 0.00 33.37 3.01
3689 3776 6.117911 TGTGATACGCAAATAACAGGAATG 57.882 37.500 0.00 0.00 0.00 2.67
3691 3778 4.637977 TGATACGCAAATAACAGGAATGCA 59.362 37.500 0.00 0.00 36.84 3.96
3706 3793 4.925054 AGGAATGCATTTCATGTTTTGTCG 59.075 37.500 19.95 0.00 35.94 4.35
3811 3898 5.235850 TGCAGGTACCATTTAGACTTTCA 57.764 39.130 15.94 0.00 0.00 2.69
3946 4033 5.531634 TCAGTTTGATCCATTTTGAACAGC 58.468 37.500 0.00 0.00 0.00 4.40
3967 4055 8.798859 ACAGCATATCTTATTTGTTTCACTCT 57.201 30.769 0.00 0.00 0.00 3.24
4012 4100 7.734924 ATTCGAAATAATCTCATTGCTGCTA 57.265 32.000 0.00 0.00 0.00 3.49
4013 4101 7.734924 TTCGAAATAATCTCATTGCTGCTAT 57.265 32.000 0.00 0.00 0.00 2.97
4141 4229 2.003301 GCTCTCTGTTCCGAAATGGTC 58.997 52.381 0.00 0.00 39.52 4.02
4212 4302 3.505464 ATCTGGTACTCTACGCAACAC 57.495 47.619 0.00 0.00 0.00 3.32
4216 4306 4.095932 TCTGGTACTCTACGCAACACTATG 59.904 45.833 0.00 0.00 0.00 2.23
4225 4315 3.371168 ACGCAACACTATGTTTTTGCTG 58.629 40.909 3.88 0.89 38.77 4.41
4335 4425 6.194796 TGCAGATGGCTTAAAGAACATAAC 57.805 37.500 0.00 0.00 45.15 1.89
4380 4470 4.557205 CACGAGTTAGCAAGGAACTACTT 58.443 43.478 0.00 0.00 38.49 2.24
4433 4523 7.038729 TCAGACATGGGATAATGGTAAGAGATC 60.039 40.741 0.00 0.00 31.46 2.75
4459 4552 7.744087 TGATTGTATATTTCATTTCTCCCCG 57.256 36.000 0.00 0.00 0.00 5.73
4467 4560 1.351017 TCATTTCTCCCCGTTGCTTCT 59.649 47.619 0.00 0.00 0.00 2.85
4600 4693 9.740239 TGATTAGAAGAATGAAAAATGCTATGC 57.260 29.630 0.00 0.00 0.00 3.14
4663 4764 2.414994 ACAGAGGATGCAAGTGGATG 57.585 50.000 0.00 0.00 0.00 3.51
4763 4865 4.287067 ACTCAAGCACCTAAATTCCTCTCA 59.713 41.667 0.00 0.00 0.00 3.27
4785 4887 7.714813 TCTCATGATTTTAACAAGTGACAGTGA 59.285 33.333 0.00 0.00 0.00 3.41
4793 4895 2.912956 ACAAGTGACAGTGATATGGGGT 59.087 45.455 0.00 0.00 0.00 4.95
4868 4972 5.897050 TGTTGTTTTTGTGTGAGATAACCC 58.103 37.500 0.00 0.00 0.00 4.11
5181 5285 3.162666 TGACCTCATTGTAACTCTCGGT 58.837 45.455 0.00 0.00 0.00 4.69
5429 5545 8.960591 CCAAATGATTAGAATAGGTCAAACAGT 58.039 33.333 0.00 0.00 0.00 3.55
5560 5846 8.637986 GGAAGAGACTTGTAGATAGATGATTGT 58.362 37.037 0.00 0.00 0.00 2.71
5709 6003 5.798132 TCTTCTACTGTCAATGCAAGATGT 58.202 37.500 0.00 0.00 0.00 3.06
5782 6076 4.258457 AGTGAGCCAGGTCTAGTTCTAT 57.742 45.455 0.00 0.00 0.00 1.98
5887 6181 7.303634 TGTATTAGAAAAAGAATGACGAGCC 57.696 36.000 0.00 0.00 0.00 4.70
5973 6268 6.108015 ACTAAGAGAAGACCTACTCTACACG 58.892 44.000 0.00 0.00 41.77 4.49
6020 6315 2.697751 ACCTACTCCAATCTAGCAGCTG 59.302 50.000 10.11 10.11 0.00 4.24
6111 6410 9.126151 TGTTATGTTGAAACAAATTCTGTCCTA 57.874 29.630 0.00 0.00 43.03 2.94
6191 6491 3.636153 AGGGAGCTCTTTAACATGACC 57.364 47.619 14.64 1.76 0.00 4.02
6193 6493 3.525199 AGGGAGCTCTTTAACATGACCAT 59.475 43.478 14.64 0.00 0.00 3.55
6208 6508 4.150897 TGACCATATCTGTAAACAGGCC 57.849 45.455 10.11 0.00 43.91 5.19
6276 6576 3.605726 TGGATCATTGGGCTTCATGAT 57.394 42.857 0.00 6.37 36.56 2.45
6308 6608 8.304596 TCCGTATCCTTAATCATCAGTGTTATC 58.695 37.037 0.00 0.00 0.00 1.75
6343 6643 4.220382 TGCTTGCTAACCATGTTGCTAAAT 59.780 37.500 0.00 0.00 0.00 1.40
6366 6666 5.964887 TGCACTGCTGTTTATTTTTGTTC 57.035 34.783 1.98 0.00 0.00 3.18
6415 6715 2.346766 TCTGCCTTTTCAACTCTGCA 57.653 45.000 0.00 0.00 0.00 4.41
6416 6716 2.867624 TCTGCCTTTTCAACTCTGCAT 58.132 42.857 0.00 0.00 0.00 3.96
6454 6756 3.890756 TGTTTGATTCCATCTGCAACTGT 59.109 39.130 0.00 0.00 0.00 3.55
6493 6795 7.427606 GCAATGTTTGATCTCAGAGATTTAACG 59.572 37.037 14.46 9.72 34.53 3.18
6544 6847 7.103745 TCTCATACAATCTCTATACCAGGGA 57.896 40.000 0.00 0.00 38.45 4.20
6580 6886 8.445275 TTTTGCAGACTAACAGTGAATCTTAA 57.555 30.769 0.00 0.00 0.00 1.85
6682 6992 6.476243 CTTAACTTAAGGTTAGCAAGCGAA 57.524 37.500 7.53 0.00 40.87 4.70
6724 7034 3.676646 GCAATGTGCTGAAAAGACCATTC 59.323 43.478 0.00 0.00 40.96 2.67
6745 7055 1.593787 CATCACACTGAGGAGCCGT 59.406 57.895 0.00 0.00 27.97 5.68
6922 7232 7.821134 ACAAGGAGATGGGCTAATAATATCT 57.179 36.000 0.00 0.00 0.00 1.98
7017 7327 7.784470 AACTCTACATATACTCCCCAGATTC 57.216 40.000 0.00 0.00 0.00 2.52
7031 7341 6.476378 TCCCCAGATTCTATTTAGCATTAGC 58.524 40.000 0.00 0.00 42.56 3.09
7140 7634 6.365520 AGACTTTGACCAGGAATTACTTGTT 58.634 36.000 0.00 0.00 0.00 2.83
7141 7635 7.514721 AGACTTTGACCAGGAATTACTTGTTA 58.485 34.615 0.00 0.00 0.00 2.41
7142 7636 7.996644 AGACTTTGACCAGGAATTACTTGTTAA 59.003 33.333 0.00 0.00 0.00 2.01
7143 7637 8.706322 ACTTTGACCAGGAATTACTTGTTAAT 57.294 30.769 0.57 0.00 31.07 1.40
7144 7638 9.143155 ACTTTGACCAGGAATTACTTGTTAATT 57.857 29.630 0.57 0.00 42.18 1.40
7145 7639 9.410556 CTTTGACCAGGAATTACTTGTTAATTG 57.589 33.333 0.57 0.00 39.99 2.32
7146 7640 8.472007 TTGACCAGGAATTACTTGTTAATTGT 57.528 30.769 0.00 0.00 39.99 2.71
7186 7680 8.479689 TGGAATTGGTATCACTAGATTCGTTTA 58.520 33.333 0.00 0.00 35.67 2.01
7262 7758 4.767409 GGAGTAATTCTTGGTCAAAGCCTT 59.233 41.667 0.00 0.00 35.69 4.35
7264 7760 3.391506 AATTCTTGGTCAAAGCCTTGC 57.608 42.857 0.00 0.00 35.69 4.01
7266 7762 0.465460 TCTTGGTCAAAGCCTTGCGT 60.465 50.000 0.00 0.00 35.69 5.24
7270 7766 2.235016 TGGTCAAAGCCTTGCGTTAAT 58.765 42.857 0.00 0.00 32.14 1.40
7271 7767 2.030363 TGGTCAAAGCCTTGCGTTAATG 60.030 45.455 0.00 0.00 32.14 1.90
7300 7797 7.512992 ACTAATAGGCCTTATATCATGATGCC 58.487 38.462 20.93 20.93 37.68 4.40
7313 7810 6.560003 ATCATGATGCCGGGAAAGTATATA 57.440 37.500 7.59 0.00 0.00 0.86
7318 7815 7.681939 TGATGCCGGGAAAGTATATATTTTC 57.318 36.000 17.91 17.91 32.96 2.29
7402 7899 4.887655 AGTTCAGTTTTTAAGGGGTCACTG 59.112 41.667 0.00 0.00 34.22 3.66
7483 7983 5.536538 TCACAAAGCCCATTGTACATGTAAA 59.463 36.000 7.25 0.00 41.44 2.01
7515 8015 6.089249 AGAGGAATCAACAACCAACAATTC 57.911 37.500 0.00 0.00 0.00 2.17
7518 8018 4.679654 GGAATCAACAACCAACAATTCGAC 59.320 41.667 0.00 0.00 0.00 4.20
7556 8059 9.023962 AGCAATTAGACAATTTTGATGGTTCTA 57.976 29.630 0.00 0.00 31.82 2.10
7565 8068 8.356657 ACAATTTTGATGGTTCTATTTTCGTCA 58.643 29.630 0.00 0.00 0.00 4.35
7628 8131 7.715249 TGAGTTACTGCTTCTCATTTAAGTTGT 59.285 33.333 0.00 0.00 34.00 3.32
7629 8132 8.089115 AGTTACTGCTTCTCATTTAAGTTGTC 57.911 34.615 0.00 0.00 0.00 3.18
7630 8133 7.934120 AGTTACTGCTTCTCATTTAAGTTGTCT 59.066 33.333 0.00 0.00 0.00 3.41
7631 8134 6.551385 ACTGCTTCTCATTTAAGTTGTCTG 57.449 37.500 0.00 0.00 0.00 3.51
7632 8135 6.058183 ACTGCTTCTCATTTAAGTTGTCTGT 58.942 36.000 0.00 0.00 0.00 3.41
7633 8136 7.217200 ACTGCTTCTCATTTAAGTTGTCTGTA 58.783 34.615 0.00 0.00 0.00 2.74
7634 8137 7.880195 ACTGCTTCTCATTTAAGTTGTCTGTAT 59.120 33.333 0.00 0.00 0.00 2.29
7635 8138 8.621532 TGCTTCTCATTTAAGTTGTCTGTATT 57.378 30.769 0.00 0.00 0.00 1.89
7636 8139 9.719355 TGCTTCTCATTTAAGTTGTCTGTATTA 57.281 29.630 0.00 0.00 0.00 0.98
7637 8140 9.974750 GCTTCTCATTTAAGTTGTCTGTATTAC 57.025 33.333 0.00 0.00 0.00 1.89
7648 8151 7.584987 AGTTGTCTGTATTACAAGTTTGATGC 58.415 34.615 0.00 0.00 37.22 3.91
8131 8654 7.497909 GTCCGGTTCTTTATGAATCCTTGAATA 59.502 37.037 0.00 0.00 36.99 1.75
8170 8696 3.181491 GCTGCGCATAAAAGGGTTTATCA 60.181 43.478 12.24 0.00 37.75 2.15
8303 8833 6.484288 TGAAACTCTGATGTGAATAATGGGT 58.516 36.000 0.00 0.00 0.00 4.51
8319 8849 0.899717 GGGTGGATTTCTTGCCTGCA 60.900 55.000 0.00 0.00 0.00 4.41
8435 8969 0.178068 CCATACTTCCGTGGGACCTG 59.822 60.000 0.00 0.00 0.00 4.00
8445 8983 3.074412 CCGTGGGACCTGATTATATTGC 58.926 50.000 0.00 0.00 0.00 3.56
8479 9017 0.163146 CGCGGTTCGTTCTCCTTTTC 59.837 55.000 0.00 0.00 0.00 2.29
8482 9020 2.289820 GCGGTTCGTTCTCCTTTTCTTT 59.710 45.455 0.00 0.00 0.00 2.52
8484 9022 3.808174 CGGTTCGTTCTCCTTTTCTTTCT 59.192 43.478 0.00 0.00 0.00 2.52
8486 9024 5.220796 CGGTTCGTTCTCCTTTTCTTTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
8605 9200 2.561569 CATCCACCACCCGAAATACTC 58.438 52.381 0.00 0.00 0.00 2.59
8606 9201 0.906775 TCCACCACCCGAAATACTCC 59.093 55.000 0.00 0.00 0.00 3.85
8697 9304 3.642778 CTAGTGCACCACGGGTCGG 62.643 68.421 14.63 0.00 39.64 4.79
8718 9325 1.453155 ACCAAAGTGCATCATCCGTC 58.547 50.000 0.00 0.00 0.00 4.79
8740 9347 3.643763 GAGTCGTTCTCTTGAAAGCTCA 58.356 45.455 0.00 0.00 39.86 4.26
8764 9373 1.058404 GAAACGCTTCGCTACGAACT 58.942 50.000 0.00 0.00 41.05 3.01
8770 9379 1.933500 GCTTCGCTACGAACTCCAACA 60.934 52.381 0.00 0.00 41.05 3.33
8776 9385 4.273969 TCGCTACGAACTCCAACAAAAATT 59.726 37.500 0.00 0.00 31.06 1.82
8826 9435 4.422073 AATCTCTGGATGCAAACCGATA 57.578 40.909 0.00 0.00 31.75 2.92
8831 9440 4.269183 TCTGGATGCAAACCGATAAACAT 58.731 39.130 0.00 0.00 0.00 2.71
8841 9450 7.439356 TGCAAACCGATAAACATGAAAAATCAA 59.561 29.630 0.00 0.00 0.00 2.57
8848 9457 7.910162 CGATAAACATGAAAAATCAATCGACCT 59.090 33.333 0.00 0.00 36.67 3.85
8894 9503 4.552365 CCCGGCCGCTCATGATGT 62.552 66.667 22.85 0.00 0.00 3.06
8895 9504 3.274586 CCGGCCGCTCATGATGTG 61.275 66.667 22.85 0.00 0.00 3.21
8896 9505 2.512286 CGGCCGCTCATGATGTGT 60.512 61.111 14.67 0.00 0.00 3.72
8897 9506 2.108514 CGGCCGCTCATGATGTGTT 61.109 57.895 14.67 0.00 0.00 3.32
8898 9507 1.647545 CGGCCGCTCATGATGTGTTT 61.648 55.000 14.67 0.00 0.00 2.83
8899 9508 0.179156 GGCCGCTCATGATGTGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
8900 9509 0.179156 GCCGCTCATGATGTGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
8901 9510 1.167851 CCGCTCATGATGTGTTTGGT 58.832 50.000 0.00 0.00 0.00 3.67
8902 9511 1.541147 CCGCTCATGATGTGTTTGGTT 59.459 47.619 0.00 0.00 0.00 3.67
8903 9512 2.587956 CGCTCATGATGTGTTTGGTTG 58.412 47.619 0.00 0.00 0.00 3.77
8904 9513 2.030893 CGCTCATGATGTGTTTGGTTGT 60.031 45.455 0.00 0.00 0.00 3.32
8905 9514 3.568538 GCTCATGATGTGTTTGGTTGTC 58.431 45.455 0.00 0.00 0.00 3.18
8906 9515 3.612479 GCTCATGATGTGTTTGGTTGTCC 60.612 47.826 0.00 0.00 0.00 4.02
8907 9516 2.551887 TCATGATGTGTTTGGTTGTCCG 59.448 45.455 0.00 0.00 36.30 4.79
8908 9517 0.665835 TGATGTGTTTGGTTGTCCGC 59.334 50.000 0.00 0.00 36.30 5.54
8909 9518 0.385473 GATGTGTTTGGTTGTCCGCG 60.385 55.000 0.00 0.00 36.30 6.46
8910 9519 1.098712 ATGTGTTTGGTTGTCCGCGT 61.099 50.000 4.92 0.00 36.30 6.01
8911 9520 1.306642 TGTGTTTGGTTGTCCGCGTT 61.307 50.000 4.92 0.00 36.30 4.84
8912 9521 0.656785 GTGTTTGGTTGTCCGCGTTA 59.343 50.000 4.92 0.00 36.30 3.18
8913 9522 0.938713 TGTTTGGTTGTCCGCGTTAG 59.061 50.000 4.92 0.00 36.30 2.34
8914 9523 1.219646 GTTTGGTTGTCCGCGTTAGA 58.780 50.000 4.92 0.00 36.30 2.10
8915 9524 1.070376 GTTTGGTTGTCCGCGTTAGAC 60.070 52.381 4.92 6.17 36.30 2.59
8916 9525 0.600782 TTGGTTGTCCGCGTTAGACC 60.601 55.000 4.92 8.66 36.30 3.85
8917 9526 1.739196 GGTTGTCCGCGTTAGACCC 60.739 63.158 4.92 0.00 33.09 4.46
8918 9527 1.005867 GTTGTCCGCGTTAGACCCA 60.006 57.895 4.92 0.00 33.09 4.51
8919 9528 0.600782 GTTGTCCGCGTTAGACCCAA 60.601 55.000 4.92 0.00 33.09 4.12
8920 9529 0.600782 TTGTCCGCGTTAGACCCAAC 60.601 55.000 4.92 0.00 33.09 3.77
8921 9530 1.739196 GTCCGCGTTAGACCCAACC 60.739 63.158 4.92 0.00 0.00 3.77
8922 9531 2.208619 TCCGCGTTAGACCCAACCA 61.209 57.895 4.92 0.00 0.00 3.67
8923 9532 1.740296 CCGCGTTAGACCCAACCAG 60.740 63.158 4.92 0.00 0.00 4.00
8924 9533 1.740296 CGCGTTAGACCCAACCAGG 60.740 63.158 0.00 0.00 37.03 4.45
8925 9534 2.038837 GCGTTAGACCCAACCAGGC 61.039 63.158 0.00 0.00 35.39 4.85
8926 9535 1.376812 CGTTAGACCCAACCAGGCC 60.377 63.158 0.00 0.00 35.39 5.19
8927 9536 1.765074 GTTAGACCCAACCAGGCCA 59.235 57.895 5.01 0.00 35.39 5.36
8928 9537 0.111639 GTTAGACCCAACCAGGCCAA 59.888 55.000 5.01 0.00 35.39 4.52
8929 9538 0.854218 TTAGACCCAACCAGGCCAAA 59.146 50.000 5.01 0.00 35.39 3.28
8930 9539 1.080638 TAGACCCAACCAGGCCAAAT 58.919 50.000 5.01 0.00 35.39 2.32
8931 9540 0.190815 AGACCCAACCAGGCCAAATT 59.809 50.000 5.01 0.00 35.39 1.82
8932 9541 0.321346 GACCCAACCAGGCCAAATTG 59.679 55.000 5.01 5.66 35.39 2.32
8933 9542 0.105246 ACCCAACCAGGCCAAATTGA 60.105 50.000 5.01 0.00 35.39 2.57
8934 9543 0.609662 CCCAACCAGGCCAAATTGAG 59.390 55.000 5.01 0.00 35.39 3.02
8935 9544 1.341080 CCAACCAGGCCAAATTGAGT 58.659 50.000 5.01 0.00 0.00 3.41
8936 9545 1.273327 CCAACCAGGCCAAATTGAGTC 59.727 52.381 5.01 0.00 0.00 3.36
8937 9546 1.962807 CAACCAGGCCAAATTGAGTCA 59.037 47.619 5.01 0.00 0.00 3.41
8938 9547 2.364970 CAACCAGGCCAAATTGAGTCAA 59.635 45.455 8.27 8.27 0.00 3.18
8939 9548 2.242043 ACCAGGCCAAATTGAGTCAAG 58.758 47.619 11.91 0.00 0.00 3.02
8940 9549 2.158475 ACCAGGCCAAATTGAGTCAAGA 60.158 45.455 11.91 0.00 0.00 3.02
8941 9550 2.892852 CCAGGCCAAATTGAGTCAAGAA 59.107 45.455 11.91 0.00 0.00 2.52
8942 9551 3.512724 CCAGGCCAAATTGAGTCAAGAAT 59.487 43.478 11.91 0.00 0.00 2.40
8943 9552 4.706476 CCAGGCCAAATTGAGTCAAGAATA 59.294 41.667 11.91 0.00 0.00 1.75
8944 9553 5.185635 CCAGGCCAAATTGAGTCAAGAATAA 59.814 40.000 11.91 0.00 0.00 1.40
8945 9554 6.127253 CCAGGCCAAATTGAGTCAAGAATAAT 60.127 38.462 11.91 0.00 0.00 1.28
8946 9555 6.755141 CAGGCCAAATTGAGTCAAGAATAATG 59.245 38.462 11.91 4.05 0.00 1.90
8947 9556 6.438425 AGGCCAAATTGAGTCAAGAATAATGT 59.562 34.615 11.91 0.00 0.00 2.71
8948 9557 6.532657 GGCCAAATTGAGTCAAGAATAATGTG 59.467 38.462 11.91 0.00 0.00 3.21
8949 9558 7.092716 GCCAAATTGAGTCAAGAATAATGTGT 58.907 34.615 11.91 0.00 0.00 3.72
8950 9559 7.599998 GCCAAATTGAGTCAAGAATAATGTGTT 59.400 33.333 11.91 0.00 0.00 3.32
8951 9560 9.480053 CCAAATTGAGTCAAGAATAATGTGTTT 57.520 29.630 11.91 0.28 0.00 2.83
8953 9562 9.480053 AAATTGAGTCAAGAATAATGTGTTTGG 57.520 29.630 11.91 0.00 0.00 3.28
8954 9563 7.581213 TTGAGTCAAGAATAATGTGTTTGGT 57.419 32.000 0.08 0.00 0.00 3.67
8955 9564 7.581213 TGAGTCAAGAATAATGTGTTTGGTT 57.419 32.000 0.00 0.00 0.00 3.67
8956 9565 7.424803 TGAGTCAAGAATAATGTGTTTGGTTG 58.575 34.615 0.00 0.00 0.00 3.77
8957 9566 6.215845 AGTCAAGAATAATGTGTTTGGTTGC 58.784 36.000 0.00 0.00 0.00 4.17
8958 9567 5.982516 GTCAAGAATAATGTGTTTGGTTGCA 59.017 36.000 0.00 0.00 0.00 4.08
8959 9568 6.646240 GTCAAGAATAATGTGTTTGGTTGCAT 59.354 34.615 0.00 0.00 0.00 3.96
8960 9569 7.812191 GTCAAGAATAATGTGTTTGGTTGCATA 59.188 33.333 0.00 0.00 0.00 3.14
8961 9570 8.530311 TCAAGAATAATGTGTTTGGTTGCATAT 58.470 29.630 0.00 0.00 0.00 1.78
8962 9571 8.597227 CAAGAATAATGTGTTTGGTTGCATATG 58.403 33.333 0.00 0.00 0.00 1.78
8963 9572 7.267128 AGAATAATGTGTTTGGTTGCATATGG 58.733 34.615 4.56 0.00 0.00 2.74
8964 9573 3.891422 ATGTGTTTGGTTGCATATGGG 57.109 42.857 4.56 0.00 0.00 4.00
8965 9574 1.898472 TGTGTTTGGTTGCATATGGGG 59.102 47.619 4.56 0.00 0.00 4.96
8966 9575 1.899142 GTGTTTGGTTGCATATGGGGT 59.101 47.619 4.56 0.00 0.00 4.95
8967 9576 1.898472 TGTTTGGTTGCATATGGGGTG 59.102 47.619 4.56 0.00 0.00 4.61
8968 9577 1.206849 GTTTGGTTGCATATGGGGTGG 59.793 52.381 4.56 0.00 0.00 4.61
8969 9578 0.325110 TTGGTTGCATATGGGGTGGG 60.325 55.000 4.56 0.00 0.00 4.61
8970 9579 1.309688 GGTTGCATATGGGGTGGGT 59.690 57.895 4.56 0.00 0.00 4.51
8971 9580 0.755327 GGTTGCATATGGGGTGGGTC 60.755 60.000 4.56 0.00 0.00 4.46
8972 9581 0.033601 GTTGCATATGGGGTGGGTCA 60.034 55.000 4.56 0.00 0.00 4.02
8973 9582 0.258484 TTGCATATGGGGTGGGTCAG 59.742 55.000 4.56 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.687354 AGCTGGGACACGTGAAAGAT 59.313 50.000 25.01 9.39 0.00 2.40
132 133 0.249741 ACGACAGGTGCACCAGTAAC 60.250 55.000 36.39 21.86 35.77 2.50
168 169 0.317436 CTTTTGCGCCAACGTTGCTA 60.317 50.000 22.93 5.96 42.83 3.49
185 186 0.676466 TGATCATGGCGCCGTTTCTT 60.676 50.000 21.21 3.49 0.00 2.52
451 464 1.202758 TGTTGGGCTCACTTCGTTCAT 60.203 47.619 0.00 0.00 0.00 2.57
454 467 1.166531 GCTGTTGGGCTCACTTCGTT 61.167 55.000 0.00 0.00 0.00 3.85
517 530 0.250038 CCGCCGATTCAGTGATCCAT 60.250 55.000 0.00 0.00 0.00 3.41
551 564 4.384465 AGGAACAGGGGAGGAAGATAAAT 58.616 43.478 0.00 0.00 0.00 1.40
574 596 2.301870 AGCAGAGTACACGAATTGGGAA 59.698 45.455 0.00 0.00 0.00 3.97
575 597 1.899814 AGCAGAGTACACGAATTGGGA 59.100 47.619 0.00 0.00 0.00 4.37
596 622 5.602458 TCGGTAGTACTGTAGCGATTATG 57.398 43.478 14.25 0.00 45.34 1.90
605 631 6.205464 GTGGTATATTGCTCGGTAGTACTGTA 59.795 42.308 5.39 0.00 0.00 2.74
627 653 4.327357 CGTGCTTCATTGTAAGAGTAGTGG 59.673 45.833 0.00 0.00 0.00 4.00
655 681 0.732880 CTCCTGTTACACGAGCACCG 60.733 60.000 0.00 0.00 45.44 4.94
1043 1069 7.569016 GAAGTGTAAATTCAGAGGAAGCCTCC 61.569 46.154 9.75 0.00 40.39 4.30
1063 1089 5.717654 AGAAACCTACCCTCTAAGAGAAGTG 59.282 44.000 0.00 0.00 0.00 3.16
1155 1183 3.562176 CCCACATTAGCCATAAGGATCCC 60.562 52.174 8.55 0.00 36.89 3.85
1228 1256 3.375443 TTCCACCGTGGCCCCAAAA 62.375 57.895 13.19 0.00 37.47 2.44
1263 1291 3.401243 GAAATTCAGCCGCGCCCAG 62.401 63.158 0.00 0.00 0.00 4.45
1264 1292 3.439540 GAAATTCAGCCGCGCCCA 61.440 61.111 0.00 0.00 0.00 5.36
1265 1293 4.536687 CGAAATTCAGCCGCGCCC 62.537 66.667 0.00 0.00 0.00 6.13
1266 1294 4.536687 CCGAAATTCAGCCGCGCC 62.537 66.667 0.00 0.00 0.00 6.53
1305 1333 5.220931 CCTGAACTAAATACTCTGCAATGCC 60.221 44.000 1.53 0.00 0.00 4.40
1390 1418 3.137176 TGCTTAATCATCCTCTTCAGGGG 59.863 47.826 0.00 0.00 40.80 4.79
1464 1494 2.309613 GATGCACATGGAATAGGGCAA 58.690 47.619 0.00 0.00 34.64 4.52
1529 1559 6.636705 ACCGTATTGCAACTCTACAAGAATA 58.363 36.000 0.00 0.00 0.00 1.75
1563 1593 5.483937 TCAAAGAGATGGCCACTAGAAGTTA 59.516 40.000 8.16 0.00 0.00 2.24
1845 1886 6.909909 TGTATCCGCTCTACACAACATATAG 58.090 40.000 0.00 0.00 0.00 1.31
1862 1903 1.821216 AAGGCACCAAACTGTATCCG 58.179 50.000 0.00 0.00 0.00 4.18
2050 2093 5.643777 ACAGCAGCGATAGACTAAACAAAAT 59.356 36.000 0.00 0.00 39.76 1.82
2091 2155 9.595823 TGCTGGTAGACATTTTATAAACTCTAC 57.404 33.333 18.48 18.48 31.61 2.59
2124 2189 5.455056 AAGGAACAGATATAGTACAGGCG 57.545 43.478 0.00 0.00 0.00 5.52
2496 2561 3.374220 TCCAACAGCTTCAATTGCAAG 57.626 42.857 4.94 6.89 0.00 4.01
2567 2632 2.669569 TTGCGCTTCCACTCAGCC 60.670 61.111 9.73 0.00 33.29 4.85
2594 2659 2.753446 GCCTTGGCTGCCTTCTCC 60.753 66.667 21.03 0.78 0.00 3.71
2783 2849 5.221048 CCTTCTTTCGTTGACTGGTTTGAAT 60.221 40.000 0.00 0.00 0.00 2.57
2917 2984 9.502091 TGAGTATTTCTGCTAAAACAGTGTATT 57.498 29.630 0.00 0.00 38.84 1.89
2918 2985 9.155975 CTGAGTATTTCTGCTAAAACAGTGTAT 57.844 33.333 0.00 0.00 38.84 2.29
2919 2986 7.117812 GCTGAGTATTTCTGCTAAAACAGTGTA 59.882 37.037 0.00 0.00 44.65 2.90
2920 2987 6.073003 GCTGAGTATTTCTGCTAAAACAGTGT 60.073 38.462 0.00 0.00 44.65 3.55
2921 2988 6.310197 GCTGAGTATTTCTGCTAAAACAGTG 58.690 40.000 0.00 0.00 44.65 3.66
2922 2989 5.120830 CGCTGAGTATTTCTGCTAAAACAGT 59.879 40.000 0.00 0.00 45.54 3.55
2923 2990 5.120830 ACGCTGAGTATTTCTGCTAAAACAG 59.879 40.000 0.00 0.00 45.54 3.16
2924 2991 4.994852 ACGCTGAGTATTTCTGCTAAAACA 59.005 37.500 4.87 0.00 45.54 2.83
2925 2992 5.446073 GGACGCTGAGTATTTCTGCTAAAAC 60.446 44.000 4.87 0.00 45.54 2.43
2926 2993 4.630069 GGACGCTGAGTATTTCTGCTAAAA 59.370 41.667 4.87 0.00 45.54 1.52
2927 2994 4.081642 AGGACGCTGAGTATTTCTGCTAAA 60.082 41.667 4.87 0.00 45.54 1.85
2928 2995 3.447586 AGGACGCTGAGTATTTCTGCTAA 59.552 43.478 4.87 0.00 45.54 3.09
2929 2996 3.024547 AGGACGCTGAGTATTTCTGCTA 58.975 45.455 4.87 0.00 45.54 3.49
2930 2997 1.827969 AGGACGCTGAGTATTTCTGCT 59.172 47.619 4.87 0.00 45.54 4.24
2931 2998 2.301577 AGGACGCTGAGTATTTCTGC 57.698 50.000 0.00 0.00 44.62 4.26
2932 2999 4.355437 CACTAGGACGCTGAGTATTTCTG 58.645 47.826 0.00 0.00 0.00 3.02
2933 3000 3.381908 CCACTAGGACGCTGAGTATTTCT 59.618 47.826 0.00 0.00 36.89 2.52
2934 3001 3.380637 TCCACTAGGACGCTGAGTATTTC 59.619 47.826 0.00 0.00 39.61 2.17
2935 3002 3.362706 TCCACTAGGACGCTGAGTATTT 58.637 45.455 0.00 0.00 39.61 1.40
2936 3003 3.014304 TCCACTAGGACGCTGAGTATT 57.986 47.619 0.00 0.00 39.61 1.89
2937 3004 2.730934 TCCACTAGGACGCTGAGTAT 57.269 50.000 0.00 0.00 39.61 2.12
2938 3005 2.502142 TTCCACTAGGACGCTGAGTA 57.498 50.000 0.00 0.00 45.73 2.59
2939 3006 1.629043 TTTCCACTAGGACGCTGAGT 58.371 50.000 0.00 0.00 45.73 3.41
2940 3007 2.969628 ATTTCCACTAGGACGCTGAG 57.030 50.000 0.00 0.00 45.73 3.35
2941 3008 5.116180 CAAATATTTCCACTAGGACGCTGA 58.884 41.667 0.00 0.00 45.73 4.26
2942 3009 4.260784 GCAAATATTTCCACTAGGACGCTG 60.261 45.833 0.00 0.00 45.73 5.18
2943 3010 3.877508 GCAAATATTTCCACTAGGACGCT 59.122 43.478 0.00 0.00 45.73 5.07
2944 3011 3.625764 TGCAAATATTTCCACTAGGACGC 59.374 43.478 0.00 0.00 45.73 5.19
2945 3012 5.296780 ACATGCAAATATTTCCACTAGGACG 59.703 40.000 0.00 0.00 45.73 4.79
2946 3013 6.699575 ACATGCAAATATTTCCACTAGGAC 57.300 37.500 0.00 0.00 45.73 3.85
2947 3014 6.096705 CCAACATGCAAATATTTCCACTAGGA 59.903 38.462 0.00 0.00 43.93 2.94
2948 3015 6.275335 CCAACATGCAAATATTTCCACTAGG 58.725 40.000 0.00 0.00 0.00 3.02
2949 3016 5.750067 GCCAACATGCAAATATTTCCACTAG 59.250 40.000 0.00 0.00 0.00 2.57
2950 3017 5.395103 GGCCAACATGCAAATATTTCCACTA 60.395 40.000 0.00 0.00 0.00 2.74
2951 3018 4.506758 GCCAACATGCAAATATTTCCACT 58.493 39.130 0.00 0.00 0.00 4.00
2952 3019 3.622612 GGCCAACATGCAAATATTTCCAC 59.377 43.478 0.00 0.00 0.00 4.02
2953 3020 3.518705 AGGCCAACATGCAAATATTTCCA 59.481 39.130 5.01 0.00 0.00 3.53
2954 3021 3.872771 CAGGCCAACATGCAAATATTTCC 59.127 43.478 5.01 0.00 0.00 3.13
2955 3022 3.872771 CCAGGCCAACATGCAAATATTTC 59.127 43.478 5.01 0.00 0.00 2.17
2956 3023 3.370739 CCCAGGCCAACATGCAAATATTT 60.371 43.478 5.01 0.00 0.00 1.40
2957 3024 2.171027 CCCAGGCCAACATGCAAATATT 59.829 45.455 5.01 0.00 0.00 1.28
2958 3025 1.764134 CCCAGGCCAACATGCAAATAT 59.236 47.619 5.01 0.00 0.00 1.28
2959 3026 1.193323 CCCAGGCCAACATGCAAATA 58.807 50.000 5.01 0.00 0.00 1.40
2960 3027 1.984817 CCCAGGCCAACATGCAAAT 59.015 52.632 5.01 0.00 0.00 2.32
2961 3028 2.881528 GCCCAGGCCAACATGCAAA 61.882 57.895 5.01 0.00 34.56 3.68
2962 3029 3.312718 GCCCAGGCCAACATGCAA 61.313 61.111 5.01 0.00 34.56 4.08
3004 3071 2.046892 ATGTGCAGTGGCGGAGAC 60.047 61.111 0.00 0.00 45.35 3.36
3005 3072 2.265739 GATGTGCAGTGGCGGAGA 59.734 61.111 0.00 0.00 45.35 3.71
3006 3073 2.046988 TGATGTGCAGTGGCGGAG 60.047 61.111 0.00 0.00 45.35 4.63
3007 3074 2.046988 CTGATGTGCAGTGGCGGA 60.047 61.111 0.00 0.00 45.35 5.54
3109 3177 3.624326 TTCTTGACAAAATCAGGTGCG 57.376 42.857 0.00 0.00 38.99 5.34
3204 3272 1.375268 GGCAGTCTCCAGTGTCAGC 60.375 63.158 0.00 0.00 0.00 4.26
3227 3295 1.001487 CGCAACAGCCTGTTTCATCAA 60.001 47.619 7.51 0.00 38.77 2.57
3360 3429 5.707242 ACAGACGTATGTGAGGGTATATG 57.293 43.478 16.22 0.00 30.46 1.78
3462 3532 2.884827 CAGCATCAGATGACGAACAGA 58.115 47.619 15.12 0.00 31.30 3.41
3469 3539 1.890979 CCCGGCAGCATCAGATGAC 60.891 63.158 15.12 5.71 35.27 3.06
3484 3554 2.213499 CAAGTATTTAGAGGCAGCCCG 58.787 52.381 8.22 0.00 35.76 6.13
3630 3717 3.193267 AGACAACTGCTTGTGCTTTTCAA 59.807 39.130 0.00 0.00 40.93 2.69
3674 3761 6.711579 CATGAAATGCATTCCTGTTATTTGC 58.288 36.000 13.38 0.00 37.62 3.68
3691 3778 4.050553 CCAACTGCGACAAAACATGAAAT 58.949 39.130 0.00 0.00 0.00 2.17
3780 3867 9.555727 GTCTAAATGGTACCTGCAAATATAAGA 57.444 33.333 14.36 1.02 0.00 2.10
3811 3898 2.147946 TATCCCCATTGCTACCCCAT 57.852 50.000 0.00 0.00 0.00 4.00
3946 4033 9.713740 GCAGAAGAGTGAAACAAATAAGATATG 57.286 33.333 0.00 0.00 41.43 1.78
3967 4055 6.583427 CGAATTCTCAAACAATCATTGCAGAA 59.417 34.615 3.52 1.14 33.13 3.02
4141 4229 2.821969 AGGCAGCAAAGAAACATACCTG 59.178 45.455 0.00 0.00 0.00 4.00
4216 4306 7.970614 CAGGAGATAATAAGTTCCAGCAAAAAC 59.029 37.037 0.00 0.00 32.02 2.43
4225 4315 8.910351 ACATTAAGCAGGAGATAATAAGTTCC 57.090 34.615 0.00 0.00 0.00 3.62
4335 4425 7.023575 GTGGCTCTACAAAGATGTTTATGTTG 58.976 38.462 0.00 0.00 41.05 3.33
4433 4523 8.292448 CGGGGAGAAATGAAATATACAATCAAG 58.708 37.037 0.00 0.00 0.00 3.02
4457 4550 2.440539 AGTACAGTCAGAAGCAACGG 57.559 50.000 0.00 0.00 0.00 4.44
4459 4552 4.574828 TCCAAAAGTACAGTCAGAAGCAAC 59.425 41.667 0.00 0.00 0.00 4.17
4467 4560 7.743116 TCCCTATATTCCAAAAGTACAGTCA 57.257 36.000 0.00 0.00 0.00 3.41
4650 4751 5.627499 TTACTTGAACATCCACTTGCATC 57.373 39.130 0.00 0.00 0.00 3.91
4868 4972 3.508793 TGGTAGTCTTGGTAGAGGAAACG 59.491 47.826 0.00 0.00 0.00 3.60
4946 5050 1.936547 CCTCGAGCATTAACAGGAAGC 59.063 52.381 6.99 0.00 0.00 3.86
5181 5285 2.487086 CCACAGAACAGTTCCATCACCA 60.487 50.000 9.85 0.00 0.00 4.17
5341 5453 0.881796 GCACAAAGGAACTAGGCACC 59.118 55.000 0.00 0.00 38.49 5.01
5343 5455 2.584835 ATGCACAAAGGAACTAGGCA 57.415 45.000 0.00 0.00 38.49 4.75
5528 5814 5.606348 ATCTACAAGTCTCTTCCATCCAC 57.394 43.478 0.00 0.00 0.00 4.02
5693 5987 1.466866 CGCCACATCTTGCATTGACAG 60.467 52.381 0.00 0.00 0.00 3.51
5709 6003 0.527113 CACAAATCAATCAGCCGCCA 59.473 50.000 0.00 0.00 0.00 5.69
5782 6076 1.550524 AGAACTCGGTGCTATTGCTCA 59.449 47.619 0.00 0.00 40.48 4.26
5881 6175 3.754850 GGTAATTTGTACTTTGGGCTCGT 59.245 43.478 0.00 0.00 0.00 4.18
5887 6181 6.212955 CCACAGTTGGTAATTTGTACTTTGG 58.787 40.000 0.00 0.00 38.23 3.28
5924 6219 4.249661 TGGTTTTGGCTTTGTCTGTTTTC 58.750 39.130 0.00 0.00 0.00 2.29
5973 6268 9.835389 TTAGAGTAGGTATCTCTTACTTCTGTC 57.165 37.037 0.87 0.00 41.66 3.51
6065 6364 4.344104 ACACAGCCAGCATTTAGGTTATT 58.656 39.130 0.00 0.00 0.00 1.40
6111 6410 8.695456 ACTGAAAATTATGGAGAACAACAAACT 58.305 29.630 0.00 0.00 0.00 2.66
6191 6491 2.560504 TGCGGCCTGTTTACAGATATG 58.439 47.619 11.35 0.00 46.59 1.78
6193 6493 2.169561 TGATGCGGCCTGTTTACAGATA 59.830 45.455 11.35 0.00 46.59 1.98
6208 6508 1.632422 GCCCTTTGAACAATGATGCG 58.368 50.000 0.00 0.00 0.00 4.73
6276 6576 5.605069 TGATGATTAAGGATACGGAAGGGAA 59.395 40.000 0.00 0.00 46.39 3.97
6308 6608 5.048782 TGGTTAGCAAGCACTCATAACAAAG 60.049 40.000 0.00 0.00 33.29 2.77
6343 6643 6.105333 AGAACAAAAATAAACAGCAGTGCAA 58.895 32.000 19.20 0.00 0.00 4.08
6415 6715 3.520691 AACATGCCATGGATCTGCTAT 57.479 42.857 18.40 0.00 33.60 2.97
6416 6716 2.953648 CAAACATGCCATGGATCTGCTA 59.046 45.455 18.40 0.00 33.60 3.49
6477 6779 7.589958 AGTATGGACGTTAAATCTCTGAGAT 57.410 36.000 14.31 14.31 36.28 2.75
6544 6847 8.279970 TGTTAGTCTGCAAAATATGTAAGCAT 57.720 30.769 0.00 0.00 39.03 3.79
6682 6992 2.632377 CCCAAGCATTCACGATACTGT 58.368 47.619 0.00 0.00 0.00 3.55
6724 7034 0.392193 GGCTCCTCAGTGTGATGGTG 60.392 60.000 0.00 0.00 0.00 4.17
6745 7055 3.679502 CACGAATTACATGACACTGCAGA 59.320 43.478 23.35 0.00 0.00 4.26
6922 7232 2.426522 GCTGTGCTTCCAGATGTTGTA 58.573 47.619 3.28 0.00 34.23 2.41
7031 7341 9.927668 ACCTTTCCAGTGATTTAAAACATAATG 57.072 29.630 1.17 2.31 0.00 1.90
7262 7758 6.765403 AGGCCTATTAGTATTCATTAACGCA 58.235 36.000 1.29 0.00 0.00 5.24
7292 7788 7.630242 AAATATATACTTTCCCGGCATCATG 57.370 36.000 0.00 0.00 0.00 3.07
7298 7794 7.937649 AGTTTGAAAATATATACTTTCCCGGC 58.062 34.615 12.74 3.13 31.75 6.13
7313 7810 9.220767 GAGATACACCTCAACTAGTTTGAAAAT 57.779 33.333 5.07 0.00 43.90 1.82
7318 7815 6.692486 ACTGAGATACACCTCAACTAGTTTG 58.308 40.000 5.07 4.38 42.05 2.93
7426 7923 2.857186 TGCTCAGGCAACATTACTCA 57.143 45.000 0.00 0.00 46.36 3.41
7449 7948 2.293122 TGGGCTTTGTGACGATTTGAAG 59.707 45.455 0.00 0.00 0.00 3.02
7515 8015 9.678941 TGTCTAATTGCTAATACATTCTAGTCG 57.321 33.333 0.00 0.00 0.00 4.18
7529 8032 9.023962 AGAACCATCAAAATTGTCTAATTGCTA 57.976 29.630 0.00 0.00 36.65 3.49
7556 8059 2.884639 CAAACCAGGGAGTGACGAAAAT 59.115 45.455 0.00 0.00 0.00 1.82
7561 8064 2.536761 TTACAAACCAGGGAGTGACG 57.463 50.000 0.00 0.00 0.00 4.35
7565 8068 5.640147 TGAAATGATTACAAACCAGGGAGT 58.360 37.500 0.00 0.00 0.00 3.85
7603 8106 8.089115 ACAACTTAAATGAGAAGCAGTAACTC 57.911 34.615 0.00 0.00 0.00 3.01
7628 8131 7.317390 TCGTAGCATCAAACTTGTAATACAGA 58.683 34.615 0.00 0.00 0.00 3.41
7629 8132 7.520119 TCGTAGCATCAAACTTGTAATACAG 57.480 36.000 0.00 0.00 0.00 2.74
7630 8133 8.487313 AATCGTAGCATCAAACTTGTAATACA 57.513 30.769 0.00 0.00 0.00 2.29
7631 8134 9.210426 CAAATCGTAGCATCAAACTTGTAATAC 57.790 33.333 0.00 0.00 0.00 1.89
7632 8135 7.908082 GCAAATCGTAGCATCAAACTTGTAATA 59.092 33.333 0.00 0.00 0.00 0.98
7633 8136 6.747280 GCAAATCGTAGCATCAAACTTGTAAT 59.253 34.615 0.00 0.00 0.00 1.89
7634 8137 6.083630 GCAAATCGTAGCATCAAACTTGTAA 58.916 36.000 0.00 0.00 0.00 2.41
7635 8138 5.391523 GGCAAATCGTAGCATCAAACTTGTA 60.392 40.000 0.00 0.00 0.00 2.41
7636 8139 4.475944 GCAAATCGTAGCATCAAACTTGT 58.524 39.130 0.00 0.00 0.00 3.16
7637 8140 3.853671 GGCAAATCGTAGCATCAAACTTG 59.146 43.478 0.00 0.00 0.00 3.16
7638 8141 3.758554 AGGCAAATCGTAGCATCAAACTT 59.241 39.130 0.00 0.00 0.00 2.66
7639 8142 3.127548 CAGGCAAATCGTAGCATCAAACT 59.872 43.478 0.00 0.00 0.00 2.66
7640 8143 3.119849 ACAGGCAAATCGTAGCATCAAAC 60.120 43.478 0.00 0.00 0.00 2.93
7641 8144 3.081061 ACAGGCAAATCGTAGCATCAAA 58.919 40.909 0.00 0.00 0.00 2.69
7642 8145 2.419673 CACAGGCAAATCGTAGCATCAA 59.580 45.455 0.00 0.00 0.00 2.57
7643 8146 2.009051 CACAGGCAAATCGTAGCATCA 58.991 47.619 0.00 0.00 0.00 3.07
7644 8147 1.268234 GCACAGGCAAATCGTAGCATC 60.268 52.381 0.00 0.00 40.72 3.91
7645 8148 0.734889 GCACAGGCAAATCGTAGCAT 59.265 50.000 0.00 0.00 40.72 3.79
7646 8149 2.170738 GCACAGGCAAATCGTAGCA 58.829 52.632 0.00 0.00 40.72 3.49
7799 8302 0.960364 GAATTCTGCCCTTGCCGTCA 60.960 55.000 0.00 0.00 36.33 4.35
7877 8380 1.480212 TTGTCGAGTCCACCAGGCAT 61.480 55.000 0.00 0.00 33.74 4.40
7919 8422 3.003173 TTCCAGTGGAGGCCCTCG 61.003 66.667 12.67 0.00 31.21 4.63
8091 8614 2.668550 GGACCAACACGGGAGCAC 60.669 66.667 0.00 0.00 40.22 4.40
8098 8621 1.868469 TAAAGAACCGGACCAACACG 58.132 50.000 9.46 0.00 0.00 4.49
8170 8696 8.943594 TCCACAAACCTAAACCTAAACATATT 57.056 30.769 0.00 0.00 0.00 1.28
8188 8718 3.058570 CGACCATGTTCGAATTCCACAAA 60.059 43.478 6.86 0.00 41.78 2.83
8303 8833 0.251474 AGCTGCAGGCAAGAAATCCA 60.251 50.000 17.12 0.00 44.79 3.41
8361 8895 4.213482 GGTTATGATTAGGAATCGGCACAC 59.787 45.833 0.00 0.00 40.84 3.82
8435 8969 7.203218 GGGACAAGAAAACCAGCAATATAATC 58.797 38.462 0.00 0.00 0.00 1.75
8445 8983 1.574428 CGCGGGACAAGAAAACCAG 59.426 57.895 0.00 0.00 0.00 4.00
8484 9022 8.757877 CCCACCTGAAGATTTCCATTAATAAAA 58.242 33.333 0.00 0.00 0.00 1.52
8486 9024 6.838612 CCCCACCTGAAGATTTCCATTAATAA 59.161 38.462 0.00 0.00 0.00 1.40
8491 9072 2.654385 TCCCCACCTGAAGATTTCCATT 59.346 45.455 0.00 0.00 0.00 3.16
8519 9109 3.380471 AAAATGAATGGTCATCGGGGA 57.620 42.857 0.00 0.00 44.02 4.81
8553 9143 2.031930 TGCCGTTACGTGGTTTTCTTTC 59.968 45.455 3.52 0.00 0.00 2.62
8697 9304 2.351726 GACGGATGATGCACTTTGGTAC 59.648 50.000 0.00 0.00 0.00 3.34
8698 9305 2.627945 GACGGATGATGCACTTTGGTA 58.372 47.619 0.00 0.00 0.00 3.25
8705 9312 1.202973 CGACTCGACGGATGATGCAC 61.203 60.000 0.00 0.00 0.00 4.57
8764 9373 1.269309 CGTGCCCGAATTTTTGTTGGA 60.269 47.619 0.00 0.00 35.63 3.53
8770 9379 2.611722 CCATTTCCGTGCCCGAATTTTT 60.612 45.455 0.00 0.00 35.63 1.94
8794 9403 3.113191 TCCAGAGATTTGAGAGGCTCT 57.887 47.619 18.80 18.80 38.19 4.09
8826 9435 6.748132 ACAGGTCGATTGATTTTTCATGTTT 58.252 32.000 6.86 0.00 0.00 2.83
8831 9440 5.063204 ACTGACAGGTCGATTGATTTTTCA 58.937 37.500 7.51 0.17 0.00 2.69
8887 9496 2.921912 GCGGACAACCAAACACATCATG 60.922 50.000 0.00 0.00 35.59 3.07
8888 9497 1.269448 GCGGACAACCAAACACATCAT 59.731 47.619 0.00 0.00 35.59 2.45
8889 9498 0.665835 GCGGACAACCAAACACATCA 59.334 50.000 0.00 0.00 35.59 3.07
8890 9499 0.385473 CGCGGACAACCAAACACATC 60.385 55.000 0.00 0.00 35.59 3.06
8891 9500 1.098712 ACGCGGACAACCAAACACAT 61.099 50.000 12.47 0.00 35.59 3.21
8892 9501 1.306642 AACGCGGACAACCAAACACA 61.307 50.000 12.47 0.00 35.59 3.72
8893 9502 0.656785 TAACGCGGACAACCAAACAC 59.343 50.000 12.47 0.00 35.59 3.32
8894 9503 0.938713 CTAACGCGGACAACCAAACA 59.061 50.000 12.47 0.00 35.59 2.83
8895 9504 1.070376 GTCTAACGCGGACAACCAAAC 60.070 52.381 12.47 0.00 35.59 2.93
8896 9505 1.219646 GTCTAACGCGGACAACCAAA 58.780 50.000 12.47 0.00 35.59 3.28
8897 9506 0.600782 GGTCTAACGCGGACAACCAA 60.601 55.000 12.47 0.00 35.61 3.67
8898 9507 1.005867 GGTCTAACGCGGACAACCA 60.006 57.895 12.47 0.00 35.61 3.67
8899 9508 1.739196 GGGTCTAACGCGGACAACC 60.739 63.158 12.47 12.65 35.61 3.77
8900 9509 0.600782 TTGGGTCTAACGCGGACAAC 60.601 55.000 12.47 6.06 35.61 3.32
8901 9510 0.600782 GTTGGGTCTAACGCGGACAA 60.601 55.000 12.47 1.61 35.61 3.18
8902 9511 1.005867 GTTGGGTCTAACGCGGACA 60.006 57.895 12.47 0.00 35.61 4.02
8903 9512 1.739196 GGTTGGGTCTAACGCGGAC 60.739 63.158 12.47 8.38 33.25 4.79
8904 9513 2.162338 CTGGTTGGGTCTAACGCGGA 62.162 60.000 12.47 0.00 33.25 5.54
8905 9514 1.740296 CTGGTTGGGTCTAACGCGG 60.740 63.158 12.47 0.00 33.25 6.46
8906 9515 1.740296 CCTGGTTGGGTCTAACGCG 60.740 63.158 3.53 3.53 33.25 6.01
8907 9516 2.038837 GCCTGGTTGGGTCTAACGC 61.039 63.158 0.00 0.00 36.00 4.84
8908 9517 1.376812 GGCCTGGTTGGGTCTAACG 60.377 63.158 0.00 0.00 36.00 3.18
8909 9518 0.111639 TTGGCCTGGTTGGGTCTAAC 59.888 55.000 3.32 0.00 36.00 2.34
8910 9519 0.854218 TTTGGCCTGGTTGGGTCTAA 59.146 50.000 3.32 0.00 36.00 2.10
8911 9520 1.080638 ATTTGGCCTGGTTGGGTCTA 58.919 50.000 3.32 0.00 36.00 2.59
8912 9521 0.190815 AATTTGGCCTGGTTGGGTCT 59.809 50.000 3.32 0.00 36.00 3.85
8913 9522 0.321346 CAATTTGGCCTGGTTGGGTC 59.679 55.000 3.32 0.00 36.00 4.46
8914 9523 0.105246 TCAATTTGGCCTGGTTGGGT 60.105 50.000 3.32 0.00 36.00 4.51
8915 9524 0.609662 CTCAATTTGGCCTGGTTGGG 59.390 55.000 3.32 1.90 36.00 4.12
8916 9525 1.273327 GACTCAATTTGGCCTGGTTGG 59.727 52.381 3.32 3.42 39.35 3.77
8917 9526 1.962807 TGACTCAATTTGGCCTGGTTG 59.037 47.619 3.32 6.26 0.00 3.77
8918 9527 2.380064 TGACTCAATTTGGCCTGGTT 57.620 45.000 3.32 0.00 0.00 3.67
8919 9528 2.158475 TCTTGACTCAATTTGGCCTGGT 60.158 45.455 3.32 0.00 0.00 4.00
8920 9529 2.517959 TCTTGACTCAATTTGGCCTGG 58.482 47.619 3.32 0.00 0.00 4.45
8921 9530 4.796038 ATTCTTGACTCAATTTGGCCTG 57.204 40.909 3.32 0.00 0.00 4.85
8922 9531 6.438425 ACATTATTCTTGACTCAATTTGGCCT 59.562 34.615 3.32 0.00 0.00 5.19
8923 9532 6.532657 CACATTATTCTTGACTCAATTTGGCC 59.467 38.462 0.00 0.00 0.00 5.36
8924 9533 7.092716 ACACATTATTCTTGACTCAATTTGGC 58.907 34.615 0.00 0.00 0.00 4.52
8925 9534 9.480053 AAACACATTATTCTTGACTCAATTTGG 57.520 29.630 0.00 0.00 0.00 3.28
8927 9536 9.480053 CCAAACACATTATTCTTGACTCAATTT 57.520 29.630 0.00 0.00 0.00 1.82
8928 9537 8.641541 ACCAAACACATTATTCTTGACTCAATT 58.358 29.630 0.00 0.00 0.00 2.32
8929 9538 8.181904 ACCAAACACATTATTCTTGACTCAAT 57.818 30.769 0.00 0.00 0.00 2.57
8930 9539 7.581213 ACCAAACACATTATTCTTGACTCAA 57.419 32.000 0.00 0.00 0.00 3.02
8931 9540 7.424803 CAACCAAACACATTATTCTTGACTCA 58.575 34.615 0.00 0.00 0.00 3.41
8932 9541 6.363357 GCAACCAAACACATTATTCTTGACTC 59.637 38.462 0.00 0.00 0.00 3.36
8933 9542 6.183360 TGCAACCAAACACATTATTCTTGACT 60.183 34.615 0.00 0.00 0.00 3.41
8934 9543 5.982516 TGCAACCAAACACATTATTCTTGAC 59.017 36.000 0.00 0.00 0.00 3.18
8935 9544 6.154203 TGCAACCAAACACATTATTCTTGA 57.846 33.333 0.00 0.00 0.00 3.02
8936 9545 8.597227 CATATGCAACCAAACACATTATTCTTG 58.403 33.333 0.00 0.00 0.00 3.02
8937 9546 7.765360 CCATATGCAACCAAACACATTATTCTT 59.235 33.333 0.00 0.00 0.00 2.52
8938 9547 7.267128 CCATATGCAACCAAACACATTATTCT 58.733 34.615 0.00 0.00 0.00 2.40
8939 9548 6.479660 CCCATATGCAACCAAACACATTATTC 59.520 38.462 0.00 0.00 0.00 1.75
8940 9549 6.347696 CCCATATGCAACCAAACACATTATT 58.652 36.000 0.00 0.00 0.00 1.40
8941 9550 5.163322 CCCCATATGCAACCAAACACATTAT 60.163 40.000 0.00 0.00 0.00 1.28
8942 9551 4.161189 CCCCATATGCAACCAAACACATTA 59.839 41.667 0.00 0.00 0.00 1.90
8943 9552 3.055240 CCCCATATGCAACCAAACACATT 60.055 43.478 0.00 0.00 0.00 2.71
8944 9553 2.500910 CCCCATATGCAACCAAACACAT 59.499 45.455 0.00 0.00 0.00 3.21
8945 9554 1.898472 CCCCATATGCAACCAAACACA 59.102 47.619 0.00 0.00 0.00 3.72
8946 9555 1.899142 ACCCCATATGCAACCAAACAC 59.101 47.619 0.00 0.00 0.00 3.32
8947 9556 1.898472 CACCCCATATGCAACCAAACA 59.102 47.619 0.00 0.00 0.00 2.83
8948 9557 1.206849 CCACCCCATATGCAACCAAAC 59.793 52.381 0.00 0.00 0.00 2.93
8949 9558 1.566211 CCACCCCATATGCAACCAAA 58.434 50.000 0.00 0.00 0.00 3.28
8950 9559 0.325110 CCCACCCCATATGCAACCAA 60.325 55.000 0.00 0.00 0.00 3.67
8951 9560 1.309347 CCCACCCCATATGCAACCA 59.691 57.895 0.00 0.00 0.00 3.67
8952 9561 0.755327 GACCCACCCCATATGCAACC 60.755 60.000 0.00 0.00 0.00 3.77
8953 9562 0.033601 TGACCCACCCCATATGCAAC 60.034 55.000 0.00 0.00 0.00 4.17
8954 9563 0.258484 CTGACCCACCCCATATGCAA 59.742 55.000 0.00 0.00 0.00 4.08
8955 9564 1.922057 CTGACCCACCCCATATGCA 59.078 57.895 0.00 0.00 0.00 3.96
8956 9565 4.907457 CTGACCCACCCCATATGC 57.093 61.111 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.