Multiple sequence alignment - TraesCS1B01G253100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G253100 chr1B 100.000 3761 0 0 1 3761 446026584 446030344 0.000000e+00 6946.0
1 TraesCS1B01G253100 chr1B 100.000 3618 0 0 4027 7644 446030610 446034227 0.000000e+00 6682.0
2 TraesCS1B01G253100 chr1B 99.383 162 1 0 4514 4675 446030610 446030771 2.090000e-75 294.0
3 TraesCS1B01G253100 chr1B 99.383 162 1 0 4027 4188 446031097 446031258 2.090000e-75 294.0
4 TraesCS1B01G253100 chr1B 93.578 109 7 0 1861 1969 406351980 406351872 6.140000e-36 163.0
5 TraesCS1B01G253100 chr1B 84.956 113 16 1 1857 1968 393535803 393535915 6.270000e-21 113.0
6 TraesCS1B01G253100 chr1B 92.308 65 4 1 2637 2701 22876660 22876723 2.940000e-14 91.6
7 TraesCS1B01G253100 chr1D 96.768 3094 72 14 549 3639 331915568 331918636 0.000000e+00 5134.0
8 TraesCS1B01G253100 chr1D 95.615 3170 107 18 4217 7369 331918888 331922042 0.000000e+00 5055.0
9 TraesCS1B01G253100 chr1D 92.920 226 10 2 7425 7644 331923068 331923293 2.660000e-84 324.0
10 TraesCS1B01G253100 chr1D 88.797 241 20 5 275 515 331915067 331915300 9.710000e-74 289.0
11 TraesCS1B01G253100 chr1D 98.148 162 2 1 4027 4188 331919185 331919345 1.620000e-71 281.0
12 TraesCS1B01G253100 chr1D 92.683 41 2 1 7540 7580 35575878 35575839 2.980000e-04 58.4
13 TraesCS1B01G253100 chr1A 96.533 1702 30 4 2063 3761 428974506 428976181 0.000000e+00 2789.0
14 TraesCS1B01G253100 chr1A 95.414 1701 61 12 4215 5907 428976587 428978278 0.000000e+00 2693.0
15 TraesCS1B01G253100 chr1A 94.308 1634 65 14 5857 7478 428978267 428979884 0.000000e+00 2477.0
16 TraesCS1B01G253100 chr1A 94.809 1599 60 11 275 1863 428972621 428974206 0.000000e+00 2471.0
17 TraesCS1B01G253100 chr1A 96.296 162 3 2 4027 4188 428976886 428977044 5.880000e-66 263.0
18 TraesCS1B01G253100 chr1A 90.761 184 16 1 93 275 442664448 442664631 2.130000e-60 244.0
19 TraesCS1B01G253100 chr1A 99.057 106 1 0 1965 2070 428974206 428974311 2.820000e-44 191.0
20 TraesCS1B01G253100 chr7B 93.909 197 9 3 83 277 692194962 692194767 2.090000e-75 294.0
21 TraesCS1B01G253100 chr7B 89.130 92 9 1 1868 1958 104029653 104029744 6.270000e-21 113.0
22 TraesCS1B01G253100 chr7B 84.404 109 15 2 1862 1968 97198590 97198698 1.050000e-18 106.0
23 TraesCS1B01G253100 chr2D 93.011 186 11 1 93 276 595226679 595226864 3.520000e-68 270.0
24 TraesCS1B01G253100 chr2D 90.541 74 4 1 2621 2694 145889969 145889899 2.270000e-15 95.3
25 TraesCS1B01G253100 chr2B 91.444 187 14 1 93 277 740226252 740226438 9.840000e-64 255.0
26 TraesCS1B01G253100 chr2B 91.667 180 14 1 97 275 362663495 362663316 1.650000e-61 248.0
27 TraesCS1B01G253100 chr2B 93.548 124 7 1 115 238 78820938 78820816 4.710000e-42 183.0
28 TraesCS1B01G253100 chr2B 94.393 107 6 0 1862 1968 403699490 403699384 1.710000e-36 165.0
29 TraesCS1B01G253100 chr2B 80.303 198 21 12 93 275 527581363 527581557 4.810000e-27 134.0
30 TraesCS1B01G253100 chr2B 94.737 57 0 1 2638 2694 206114280 206114227 1.370000e-12 86.1
31 TraesCS1B01G253100 chr3B 91.053 190 14 2 93 280 43278495 43278683 3.540000e-63 254.0
32 TraesCS1B01G253100 chr3B 86.885 61 6 2 7582 7641 671380795 671380736 4.950000e-07 67.6
33 TraesCS1B01G253100 chr3B 88.889 54 4 2 7590 7641 668817755 668817702 1.780000e-06 65.8
34 TraesCS1B01G253100 chr3B 100.000 28 0 0 7542 7569 823977966 823977993 1.400000e-02 52.8
35 TraesCS1B01G253100 chrUn 95.238 126 6 0 93 218 312869602 312869477 4.680000e-47 200.0
36 TraesCS1B01G253100 chrUn 95.238 126 6 0 93 218 312874227 312874352 4.680000e-47 200.0
37 TraesCS1B01G253100 chrUn 95.238 126 6 0 93 218 340781386 340781261 4.680000e-47 200.0
38 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 130092320 130092375 3.830000e-08 71.3
39 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 133927733 133927788 3.830000e-08 71.3
40 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 149666580 149666635 3.830000e-08 71.3
41 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 151728781 151728726 3.830000e-08 71.3
42 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 158532151 158532206 3.830000e-08 71.3
43 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 162887433 162887488 3.830000e-08 71.3
44 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 244362295 244362240 3.830000e-08 71.3
45 TraesCS1B01G253100 chrUn 89.474 57 5 1 1 57 259307108 259307053 3.830000e-08 71.3
46 TraesCS1B01G253100 chrUn 88.525 61 4 3 1 61 334086364 334086421 3.830000e-08 71.3
47 TraesCS1B01G253100 chrUn 89.583 48 5 0 7596 7643 29814056 29814009 2.300000e-05 62.1
48 TraesCS1B01G253100 chr6D 92.593 108 7 1 1862 1969 41405582 41405476 3.690000e-33 154.0
49 TraesCS1B01G253100 chr6D 90.278 72 5 1 2622 2693 363033206 363033137 8.170000e-15 93.5
50 TraesCS1B01G253100 chr6D 88.732 71 8 0 2623 2693 26243007 26243077 3.800000e-13 87.9
51 TraesCS1B01G253100 chr3A 80.402 199 20 10 93 275 614706241 614706046 4.810000e-27 134.0
52 TraesCS1B01G253100 chr5A 87.387 111 10 3 1858 1967 476661170 476661277 2.900000e-24 124.0
53 TraesCS1B01G253100 chr5A 93.548 62 4 0 2632 2693 40102064 40102003 8.170000e-15 93.5
54 TraesCS1B01G253100 chr5D 83.784 111 17 1 1859 1968 228181474 228181584 3.770000e-18 104.0
55 TraesCS1B01G253100 chr6B 90.411 73 5 1 2621 2693 545202877 545202807 2.270000e-15 95.3
56 TraesCS1B01G253100 chr2A 90.541 74 4 1 2621 2694 156370798 156370868 2.270000e-15 95.3
57 TraesCS1B01G253100 chr2A 91.111 45 3 1 7530 7573 39241872 39241916 8.280000e-05 60.2
58 TraesCS1B01G253100 chr4A 95.349 43 2 0 7599 7641 628002280 628002238 1.380000e-07 69.4
59 TraesCS1B01G253100 chr7D 93.333 45 3 0 7598 7642 224474753 224474797 4.950000e-07 67.6
60 TraesCS1B01G253100 chr7D 91.837 49 3 1 7593 7641 588680010 588679963 4.950000e-07 67.6
61 TraesCS1B01G253100 chr7D 90.244 41 4 0 7540 7580 501793403 501793363 4.000000e-03 54.7
62 TraesCS1B01G253100 chr7A 95.238 42 2 0 7601 7642 237952434 237952475 4.950000e-07 67.6
63 TraesCS1B01G253100 chr7A 100.000 28 0 0 7544 7571 549123306 549123333 1.400000e-02 52.8
64 TraesCS1B01G253100 chr5B 87.273 55 5 2 7592 7644 259544245 259544191 2.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G253100 chr1B 446026584 446034227 7643 False 3554.0 6946 99.6915 1 7644 4 chr1B.!!$F3 7643
1 TraesCS1B01G253100 chr1D 331915067 331923293 8226 False 2216.6 5134 94.4496 275 7644 5 chr1D.!!$F1 7369
2 TraesCS1B01G253100 chr1A 428972621 428979884 7263 False 1814.0 2789 96.0695 275 7478 6 chr1A.!!$F2 7203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.033109 GGGGGCCAAGTGCTCTTAAT 60.033 55.000 4.39 0.00 41.66 1.40 F
162 163 0.258774 GATTAGGGAGGGCCAAAGCA 59.741 55.000 6.18 0.00 42.56 3.91 F
164 165 0.258774 TTAGGGAGGGCCAAAGCATC 59.741 55.000 6.18 0.00 42.56 3.91 F
167 168 0.688749 GGGAGGGCCAAAGCATCAAT 60.689 55.000 6.18 0.00 42.56 2.57 F
341 342 0.928505 TCCACATGGGATGGCTCATT 59.071 50.000 0.00 0.00 42.15 2.57 F
421 422 1.363443 CCCGCTGCAACACACAATT 59.637 52.632 0.00 0.00 0.00 2.32 F
659 894 1.900486 CCTTTGTCCTTACCGGAGAGT 59.100 52.381 9.46 0.00 44.20 3.24 F
1419 1662 2.017049 GATCGGGTGAGGTTTTGGATG 58.983 52.381 0.00 0.00 0.00 3.51 F
1935 2179 3.482156 ACAGTTCAATGTCAGCTGTCT 57.518 42.857 14.67 0.00 35.78 3.41 F
3301 3750 0.629058 GGGAAATTGTAGGGGAGGCA 59.371 55.000 0.00 0.00 0.00 4.75 F
4047 4496 0.179062 GATCAGTTGCCGCTCCAGAT 60.179 55.000 0.00 0.00 0.00 2.90 F
4151 4600 0.034670 GATCCCATGGGCCTAGATGC 60.035 60.000 27.41 4.71 34.68 3.91 F
4159 4608 0.324285 GGGCCTAGATGCATGAGGAG 59.676 60.000 22.97 7.40 31.45 3.69 F
5236 5690 0.471617 AGGAGCTGACAAGTGCAAGT 59.528 50.000 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1641 0.036765 TCCAAAACCTCACCCGATCG 60.037 55.000 8.51 8.51 0.00 3.69 R
1401 1644 0.768622 ACATCCAAAACCTCACCCGA 59.231 50.000 0.00 0.00 0.00 5.14 R
1476 1720 3.981071 TGAGGACAATGTAACCCTGAG 57.019 47.619 0.00 0.00 0.00 3.35 R
1908 2152 4.044426 GCTGACATTGAACTGTTTTGGAC 58.956 43.478 0.00 0.00 0.00 4.02 R
1959 2203 5.242171 GGACAGCTAAGTATTCTACTCCCTC 59.758 48.000 0.00 0.00 38.26 4.30 R
2284 2730 6.133253 AGAAAGGAGCTCCAAATAAGTCTT 57.867 37.500 33.90 13.59 38.89 3.01 R
2547 2993 5.063880 AGGTTAAACAGCAGTCACCTTTAG 58.936 41.667 0.00 0.00 31.76 1.85 R
2962 3410 5.347907 GCAAGGCAATTCAGAAATTTCAGAG 59.652 40.000 19.99 9.51 32.69 3.35 R
3659 4108 1.600058 TTGATCTTCCCTGCCATCCT 58.400 50.000 0.00 0.00 0.00 3.24 R
4132 4581 0.034670 GCATCTAGGCCCATGGGATC 60.035 60.000 36.00 24.03 37.50 3.36 R
5802 6260 1.198759 ATACCTCAACACGGCCCACT 61.199 55.000 0.00 0.00 0.00 4.00 R
6057 6553 1.021390 GCTACTGCGCCAACTGATGT 61.021 55.000 4.18 0.00 0.00 3.06 R
6236 6737 3.250521 TGACCGACCCGTAATTGTTTTTC 59.749 43.478 0.00 0.00 0.00 2.29 R
7135 7647 1.833787 AATTACGAGTGGCCCGGTGT 61.834 55.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.515404 CGAAAGATCGGGACACCC 57.485 61.111 0.00 0.00 45.32 4.61
27 28 1.898154 CGAAAGATCGGGACACCCT 59.102 57.895 5.27 0.00 45.32 4.34
28 29 0.179108 CGAAAGATCGGGACACCCTC 60.179 60.000 5.27 0.00 45.32 4.30
29 30 0.902531 GAAAGATCGGGACACCCTCA 59.097 55.000 5.27 0.00 42.67 3.86
30 31 0.613777 AAAGATCGGGACACCCTCAC 59.386 55.000 5.27 0.00 42.67 3.51
31 32 1.265454 AAGATCGGGACACCCTCACC 61.265 60.000 5.27 0.00 42.67 4.02
32 33 1.686110 GATCGGGACACCCTCACCT 60.686 63.158 5.27 0.00 42.67 4.00
33 34 1.677637 GATCGGGACACCCTCACCTC 61.678 65.000 5.27 0.00 42.67 3.85
34 35 2.169590 ATCGGGACACCCTCACCTCT 62.170 60.000 5.27 0.00 42.67 3.69
35 36 1.000019 CGGGACACCCTCACCTCTA 60.000 63.158 5.27 0.00 42.67 2.43
36 37 0.397254 CGGGACACCCTCACCTCTAT 60.397 60.000 5.27 0.00 42.67 1.98
37 38 1.415200 GGGACACCCTCACCTCTATC 58.585 60.000 0.00 0.00 41.34 2.08
38 39 1.343075 GGGACACCCTCACCTCTATCA 60.343 57.143 0.00 0.00 41.34 2.15
39 40 2.683768 GGACACCCTCACCTCTATCAT 58.316 52.381 0.00 0.00 0.00 2.45
40 41 2.630580 GGACACCCTCACCTCTATCATC 59.369 54.545 0.00 0.00 0.00 2.92
41 42 3.571590 GACACCCTCACCTCTATCATCT 58.428 50.000 0.00 0.00 0.00 2.90
42 43 4.447908 GGACACCCTCACCTCTATCATCTA 60.448 50.000 0.00 0.00 0.00 1.98
43 44 4.475345 ACACCCTCACCTCTATCATCTAC 58.525 47.826 0.00 0.00 0.00 2.59
44 45 4.169068 ACACCCTCACCTCTATCATCTACT 59.831 45.833 0.00 0.00 0.00 2.57
45 46 4.764823 CACCCTCACCTCTATCATCTACTC 59.235 50.000 0.00 0.00 0.00 2.59
46 47 4.417183 ACCCTCACCTCTATCATCTACTCA 59.583 45.833 0.00 0.00 0.00 3.41
47 48 5.075761 ACCCTCACCTCTATCATCTACTCAT 59.924 44.000 0.00 0.00 0.00 2.90
48 49 5.652014 CCCTCACCTCTATCATCTACTCATC 59.348 48.000 0.00 0.00 0.00 2.92
49 50 5.652014 CCTCACCTCTATCATCTACTCATCC 59.348 48.000 0.00 0.00 0.00 3.51
50 51 6.206180 TCACCTCTATCATCTACTCATCCA 57.794 41.667 0.00 0.00 0.00 3.41
51 52 6.007076 TCACCTCTATCATCTACTCATCCAC 58.993 44.000 0.00 0.00 0.00 4.02
52 53 5.184864 CACCTCTATCATCTACTCATCCACC 59.815 48.000 0.00 0.00 0.00 4.61
53 54 5.075761 ACCTCTATCATCTACTCATCCACCT 59.924 44.000 0.00 0.00 0.00 4.00
54 55 5.652014 CCTCTATCATCTACTCATCCACCTC 59.348 48.000 0.00 0.00 0.00 3.85
55 56 6.206180 TCTATCATCTACTCATCCACCTCA 57.794 41.667 0.00 0.00 0.00 3.86
56 57 6.244654 TCTATCATCTACTCATCCACCTCAG 58.755 44.000 0.00 0.00 0.00 3.35
57 58 4.256983 TCATCTACTCATCCACCTCAGT 57.743 45.455 0.00 0.00 0.00 3.41
58 59 3.956848 TCATCTACTCATCCACCTCAGTG 59.043 47.826 0.00 0.00 44.12 3.66
67 68 3.798758 ACCTCAGTGAGCCTCCAC 58.201 61.111 15.10 0.00 37.32 4.02
68 69 1.915769 ACCTCAGTGAGCCTCCACC 60.916 63.158 15.10 0.00 37.76 4.61
69 70 2.575993 CTCAGTGAGCCTCCACCG 59.424 66.667 7.33 0.00 37.76 4.94
70 71 2.997315 TCAGTGAGCCTCCACCGG 60.997 66.667 0.00 0.00 37.76 5.28
71 72 3.314331 CAGTGAGCCTCCACCGGT 61.314 66.667 0.00 0.00 37.76 5.28
72 73 3.314331 AGTGAGCCTCCACCGGTG 61.314 66.667 28.26 28.26 37.76 4.94
82 83 4.394712 CACCGGTGGCCACTCCTC 62.395 72.222 33.91 17.20 35.26 3.71
85 86 4.087892 CGGTGGCCACTCCTCCTG 62.088 72.222 33.91 9.61 44.51 3.86
86 87 4.416738 GGTGGCCACTCCTCCTGC 62.417 72.222 33.91 12.20 43.58 4.85
87 88 4.767255 GTGGCCACTCCTCCTGCG 62.767 72.222 29.12 0.00 35.26 5.18
92 93 4.020617 CACTCCTCCTGCGCCCAA 62.021 66.667 4.18 0.00 0.00 4.12
93 94 3.710722 ACTCCTCCTGCGCCCAAG 61.711 66.667 4.18 0.00 0.00 3.61
94 95 3.710722 CTCCTCCTGCGCCCAAGT 61.711 66.667 4.18 0.00 0.00 3.16
95 96 3.965539 CTCCTCCTGCGCCCAAGTG 62.966 68.421 4.18 0.00 0.00 3.16
120 121 6.305693 CGGAGCCAGAAAAATTCTATTAGG 57.694 41.667 0.00 0.00 38.11 2.69
121 122 5.239525 CGGAGCCAGAAAAATTCTATTAGGG 59.760 44.000 0.00 0.00 38.11 3.53
122 123 5.536538 GGAGCCAGAAAAATTCTATTAGGGG 59.463 44.000 0.00 0.00 38.11 4.79
123 124 5.458595 AGCCAGAAAAATTCTATTAGGGGG 58.541 41.667 0.00 0.00 38.11 5.40
137 138 3.087065 GGGGGCCAAGTGCTCTTA 58.913 61.111 4.39 0.00 41.66 2.10
138 139 1.382629 GGGGGCCAAGTGCTCTTAA 59.617 57.895 4.39 0.00 41.66 1.85
139 140 0.033109 GGGGGCCAAGTGCTCTTAAT 60.033 55.000 4.39 0.00 41.66 1.40
140 141 1.214424 GGGGGCCAAGTGCTCTTAATA 59.786 52.381 4.39 0.00 41.66 0.98
141 142 2.298610 GGGGCCAAGTGCTCTTAATAC 58.701 52.381 4.39 0.00 41.66 1.89
142 143 2.356741 GGGGCCAAGTGCTCTTAATACA 60.357 50.000 4.39 0.00 41.66 2.29
143 144 2.945668 GGGCCAAGTGCTCTTAATACAG 59.054 50.000 4.39 0.00 37.53 2.74
144 145 3.370527 GGGCCAAGTGCTCTTAATACAGA 60.371 47.826 4.39 0.00 37.53 3.41
145 146 4.455606 GGCCAAGTGCTCTTAATACAGAT 58.544 43.478 0.00 0.00 40.92 2.90
146 147 4.884164 GGCCAAGTGCTCTTAATACAGATT 59.116 41.667 0.00 0.00 40.92 2.40
147 148 6.055588 GGCCAAGTGCTCTTAATACAGATTA 58.944 40.000 0.00 0.00 40.92 1.75
148 149 6.203723 GGCCAAGTGCTCTTAATACAGATTAG 59.796 42.308 0.00 0.00 40.92 1.73
149 150 6.203723 GCCAAGTGCTCTTAATACAGATTAGG 59.796 42.308 0.00 0.00 36.87 2.69
150 151 6.708054 CCAAGTGCTCTTAATACAGATTAGGG 59.292 42.308 0.00 0.00 32.07 3.53
151 152 7.419057 CCAAGTGCTCTTAATACAGATTAGGGA 60.419 40.741 0.00 0.00 32.07 4.20
152 153 7.296628 AGTGCTCTTAATACAGATTAGGGAG 57.703 40.000 0.00 0.00 35.08 4.30
153 154 6.268847 AGTGCTCTTAATACAGATTAGGGAGG 59.731 42.308 0.00 0.00 33.94 4.30
154 155 5.544176 TGCTCTTAATACAGATTAGGGAGGG 59.456 44.000 0.00 0.00 33.94 4.30
155 156 5.569832 GCTCTTAATACAGATTAGGGAGGGC 60.570 48.000 0.00 0.00 33.94 5.19
156 157 4.844655 TCTTAATACAGATTAGGGAGGGCC 59.155 45.833 0.00 0.00 0.00 5.80
157 158 2.815357 ATACAGATTAGGGAGGGCCA 57.185 50.000 6.18 0.00 35.15 5.36
158 159 2.579624 TACAGATTAGGGAGGGCCAA 57.420 50.000 6.18 0.00 35.15 4.52
159 160 1.681229 ACAGATTAGGGAGGGCCAAA 58.319 50.000 6.18 0.00 35.15 3.28
160 161 1.566231 ACAGATTAGGGAGGGCCAAAG 59.434 52.381 6.18 0.00 35.15 2.77
161 162 0.553333 AGATTAGGGAGGGCCAAAGC 59.447 55.000 6.18 0.00 35.15 3.51
162 163 0.258774 GATTAGGGAGGGCCAAAGCA 59.741 55.000 6.18 0.00 42.56 3.91
163 164 0.936691 ATTAGGGAGGGCCAAAGCAT 59.063 50.000 6.18 0.00 42.56 3.79
164 165 0.258774 TTAGGGAGGGCCAAAGCATC 59.741 55.000 6.18 0.00 42.56 3.91
165 166 0.918799 TAGGGAGGGCCAAAGCATCA 60.919 55.000 6.18 0.00 42.56 3.07
166 167 1.305213 GGGAGGGCCAAAGCATCAA 60.305 57.895 6.18 0.00 42.56 2.57
167 168 0.688749 GGGAGGGCCAAAGCATCAAT 60.689 55.000 6.18 0.00 42.56 2.57
168 169 1.197812 GGAGGGCCAAAGCATCAATT 58.802 50.000 6.18 0.00 42.56 2.32
169 170 1.556451 GGAGGGCCAAAGCATCAATTT 59.444 47.619 6.18 0.00 42.56 1.82
170 171 2.765699 GGAGGGCCAAAGCATCAATTTA 59.234 45.455 6.18 0.00 42.56 1.40
171 172 3.181472 GGAGGGCCAAAGCATCAATTTAG 60.181 47.826 6.18 0.00 42.56 1.85
172 173 2.169144 AGGGCCAAAGCATCAATTTAGC 59.831 45.455 6.18 0.00 42.56 3.09
173 174 2.093553 GGGCCAAAGCATCAATTTAGCA 60.094 45.455 4.39 0.00 42.56 3.49
174 175 3.192466 GGCCAAAGCATCAATTTAGCAG 58.808 45.455 0.00 0.00 42.56 4.24
175 176 2.606272 GCCAAAGCATCAATTTAGCAGC 59.394 45.455 0.00 0.00 39.53 5.25
176 177 3.852286 CCAAAGCATCAATTTAGCAGCA 58.148 40.909 0.00 0.00 0.00 4.41
177 178 4.247258 CCAAAGCATCAATTTAGCAGCAA 58.753 39.130 0.00 0.00 0.00 3.91
178 179 4.691685 CCAAAGCATCAATTTAGCAGCAAA 59.308 37.500 0.00 0.00 0.00 3.68
179 180 5.179742 CCAAAGCATCAATTTAGCAGCAAAA 59.820 36.000 0.00 0.00 0.00 2.44
180 181 5.851047 AAGCATCAATTTAGCAGCAAAAC 57.149 34.783 0.00 0.00 0.00 2.43
181 182 4.885413 AGCATCAATTTAGCAGCAAAACA 58.115 34.783 0.00 0.00 0.00 2.83
182 183 5.484715 AGCATCAATTTAGCAGCAAAACAT 58.515 33.333 0.00 0.00 0.00 2.71
183 184 5.579511 AGCATCAATTTAGCAGCAAAACATC 59.420 36.000 0.00 0.00 0.00 3.06
184 185 5.349270 GCATCAATTTAGCAGCAAAACATCA 59.651 36.000 0.00 0.00 0.00 3.07
185 186 6.671402 GCATCAATTTAGCAGCAAAACATCAC 60.671 38.462 0.00 0.00 0.00 3.06
186 187 6.088016 TCAATTTAGCAGCAAAACATCACT 57.912 33.333 0.00 0.00 0.00 3.41
187 188 7.213216 TCAATTTAGCAGCAAAACATCACTA 57.787 32.000 0.00 0.00 0.00 2.74
188 189 7.656412 TCAATTTAGCAGCAAAACATCACTAA 58.344 30.769 0.00 0.00 0.00 2.24
189 190 8.306038 TCAATTTAGCAGCAAAACATCACTAAT 58.694 29.630 0.00 0.00 0.00 1.73
190 191 8.928733 CAATTTAGCAGCAAAACATCACTAATT 58.071 29.630 0.00 0.00 0.00 1.40
191 192 9.492973 AATTTAGCAGCAAAACATCACTAATTT 57.507 25.926 0.00 0.00 0.00 1.82
192 193 8.519492 TTTAGCAGCAAAACATCACTAATTTC 57.481 30.769 0.00 0.00 0.00 2.17
193 194 5.156355 AGCAGCAAAACATCACTAATTTCG 58.844 37.500 0.00 0.00 0.00 3.46
194 195 4.201523 GCAGCAAAACATCACTAATTTCGC 60.202 41.667 0.00 0.00 0.00 4.70
195 196 4.916831 CAGCAAAACATCACTAATTTCGCA 59.083 37.500 0.00 0.00 0.00 5.10
196 197 5.574055 CAGCAAAACATCACTAATTTCGCAT 59.426 36.000 0.00 0.00 0.00 4.73
197 198 6.089820 CAGCAAAACATCACTAATTTCGCATT 59.910 34.615 0.00 0.00 0.00 3.56
198 199 6.089820 AGCAAAACATCACTAATTTCGCATTG 59.910 34.615 0.00 0.00 0.00 2.82
199 200 6.128849 GCAAAACATCACTAATTTCGCATTGT 60.129 34.615 0.00 0.00 0.00 2.71
200 201 7.569226 GCAAAACATCACTAATTTCGCATTGTT 60.569 33.333 0.00 0.00 0.00 2.83
201 202 7.566858 AAACATCACTAATTTCGCATTGTTC 57.433 32.000 0.00 0.00 0.00 3.18
202 203 6.252967 ACATCACTAATTTCGCATTGTTCA 57.747 33.333 0.00 0.00 0.00 3.18
203 204 6.855836 ACATCACTAATTTCGCATTGTTCAT 58.144 32.000 0.00 0.00 0.00 2.57
204 205 7.315142 ACATCACTAATTTCGCATTGTTCATT 58.685 30.769 0.00 0.00 0.00 2.57
205 206 8.458052 ACATCACTAATTTCGCATTGTTCATTA 58.542 29.630 0.00 0.00 0.00 1.90
206 207 8.950961 CATCACTAATTTCGCATTGTTCATTAG 58.049 33.333 0.00 0.00 32.66 1.73
207 208 8.262715 TCACTAATTTCGCATTGTTCATTAGA 57.737 30.769 0.00 0.00 31.44 2.10
208 209 8.726068 TCACTAATTTCGCATTGTTCATTAGAA 58.274 29.630 0.00 0.00 31.44 2.10
209 210 9.340695 CACTAATTTCGCATTGTTCATTAGAAA 57.659 29.630 0.00 0.00 35.08 2.52
210 211 9.906660 ACTAATTTCGCATTGTTCATTAGAAAA 57.093 25.926 0.00 0.00 35.08 2.29
215 216 7.912949 TCGCATTGTTCATTAGAAAATATGC 57.087 32.000 0.00 0.00 38.88 3.14
216 217 7.479150 TCGCATTGTTCATTAGAAAATATGCA 58.521 30.769 0.00 0.00 40.43 3.96
217 218 7.644945 TCGCATTGTTCATTAGAAAATATGCAG 59.355 33.333 0.00 0.00 40.43 4.41
218 219 7.561556 GCATTGTTCATTAGAAAATATGCAGC 58.438 34.615 0.00 0.00 40.29 5.25
219 220 7.223193 GCATTGTTCATTAGAAAATATGCAGCA 59.777 33.333 0.00 0.00 40.29 4.41
220 221 9.089601 CATTGTTCATTAGAAAATATGCAGCAA 57.910 29.630 0.00 0.00 35.08 3.91
221 222 9.656040 ATTGTTCATTAGAAAATATGCAGCAAA 57.344 25.926 0.00 0.00 35.08 3.68
222 223 9.656040 TTGTTCATTAGAAAATATGCAGCAAAT 57.344 25.926 0.00 0.00 35.08 2.32
231 232 8.857098 AGAAAATATGCAGCAAATAGATGATGT 58.143 29.630 0.00 0.00 38.90 3.06
232 233 9.125906 GAAAATATGCAGCAAATAGATGATGTC 57.874 33.333 0.00 0.00 38.90 3.06
233 234 7.754851 AATATGCAGCAAATAGATGATGTCA 57.245 32.000 0.00 0.00 38.90 3.58
234 235 5.690997 ATGCAGCAAATAGATGATGTCAG 57.309 39.130 0.00 0.00 38.90 3.51
235 236 3.881089 TGCAGCAAATAGATGATGTCAGG 59.119 43.478 0.00 0.00 38.90 3.86
236 237 3.252701 GCAGCAAATAGATGATGTCAGGG 59.747 47.826 0.00 0.00 38.90 4.45
237 238 3.819337 CAGCAAATAGATGATGTCAGGGG 59.181 47.826 0.00 0.00 35.00 4.79
238 239 3.152341 GCAAATAGATGATGTCAGGGGG 58.848 50.000 0.00 0.00 0.00 5.40
264 265 3.721706 CCTGCTGGTCCCCCTGTC 61.722 72.222 0.51 0.00 32.49 3.51
265 266 2.608988 CTGCTGGTCCCCCTGTCT 60.609 66.667 0.00 0.00 32.49 3.41
266 267 2.607750 TGCTGGTCCCCCTGTCTC 60.608 66.667 0.00 0.00 32.49 3.36
267 268 3.403558 GCTGGTCCCCCTGTCTCC 61.404 72.222 0.00 0.00 32.49 3.71
268 269 3.077556 CTGGTCCCCCTGTCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
269 270 3.907027 CTGGTCCCCCTGTCTCCGT 62.907 68.421 0.00 0.00 0.00 4.69
270 271 3.075641 GGTCCCCCTGTCTCCGTC 61.076 72.222 0.00 0.00 0.00 4.79
271 272 2.283676 GTCCCCCTGTCTCCGTCA 60.284 66.667 0.00 0.00 0.00 4.35
272 273 2.283676 TCCCCCTGTCTCCGTCAC 60.284 66.667 0.00 0.00 0.00 3.67
273 274 2.283966 CCCCCTGTCTCCGTCACT 60.284 66.667 0.00 0.00 0.00 3.41
285 286 3.876300 GTCACTGCCCATGACGAC 58.124 61.111 0.00 0.00 37.34 4.34
341 342 0.928505 TCCACATGGGATGGCTCATT 59.071 50.000 0.00 0.00 42.15 2.57
366 367 3.742640 GCGAAGAGGAGAAGTGGCAATAT 60.743 47.826 0.00 0.00 0.00 1.28
418 419 3.208383 CACCCGCTGCAACACACA 61.208 61.111 0.00 0.00 0.00 3.72
420 421 1.827789 ACCCGCTGCAACACACAAT 60.828 52.632 0.00 0.00 0.00 2.71
421 422 1.363443 CCCGCTGCAACACACAATT 59.637 52.632 0.00 0.00 0.00 2.32
659 894 1.900486 CCTTTGTCCTTACCGGAGAGT 59.100 52.381 9.46 0.00 44.20 3.24
671 906 2.183046 GAGAGTGGTCAGCGCTCC 59.817 66.667 7.13 7.77 0.00 4.70
1401 1644 3.854669 CTCCCTGAAGGCGCCGAT 61.855 66.667 23.20 15.02 34.51 4.18
1419 1662 2.017049 GATCGGGTGAGGTTTTGGATG 58.983 52.381 0.00 0.00 0.00 3.51
1449 1693 6.968263 TTCATACCATTTGTGGAGTTGAAA 57.032 33.333 0.73 0.00 0.00 2.69
1450 1694 7.537596 TTCATACCATTTGTGGAGTTGAAAT 57.462 32.000 0.73 0.00 0.00 2.17
1451 1695 6.923012 TCATACCATTTGTGGAGTTGAAATG 58.077 36.000 0.73 0.00 37.00 2.32
1452 1696 6.718912 TCATACCATTTGTGGAGTTGAAATGA 59.281 34.615 0.00 0.00 38.72 2.57
1453 1697 5.867903 ACCATTTGTGGAGTTGAAATGAA 57.132 34.783 0.00 0.00 38.72 2.57
1467 1711 9.122613 GAGTTGAAATGAACTCTTGCTAATTTC 57.877 33.333 5.64 0.00 45.72 2.17
1476 1720 7.169645 TGAACTCTTGCTAATTTCATGTTTTGC 59.830 33.333 0.00 0.00 0.00 3.68
1569 1813 7.201741 GGAGGAGTAAGCATATTTCCTTTTGTC 60.202 40.741 6.48 0.00 38.35 3.18
1587 1831 7.488150 CCTTTTGTCCTTTGTTTGTCTTTACTC 59.512 37.037 0.00 0.00 0.00 2.59
1588 1832 7.455641 TTTGTCCTTTGTTTGTCTTTACTCA 57.544 32.000 0.00 0.00 0.00 3.41
1884 2128 8.068892 AGTACTCCCTCTGTTCACTTTTATAG 57.931 38.462 0.00 0.00 0.00 1.31
1907 2151 7.171630 AGGACGTTTAGACAATTCAGATAGT 57.828 36.000 0.00 0.00 0.00 2.12
1908 2152 7.036220 AGGACGTTTAGACAATTCAGATAGTG 58.964 38.462 0.00 0.00 0.00 2.74
1935 2179 3.482156 ACAGTTCAATGTCAGCTGTCT 57.518 42.857 14.67 0.00 35.78 3.41
1936 2180 4.607293 ACAGTTCAATGTCAGCTGTCTA 57.393 40.909 14.67 1.52 35.78 2.59
1951 2195 8.706035 GTCAGCTGTCTAAAACGTCTTATAAAA 58.294 33.333 14.67 0.00 0.00 1.52
2096 2542 5.407407 ACTATTTCAGTACACTCACCTGG 57.593 43.478 0.00 0.00 34.98 4.45
2284 2730 3.605634 ACCTATTGACTTAACATGCGCA 58.394 40.909 14.96 14.96 0.00 6.09
2962 3410 5.961395 TCTAAAACTGTTGACTTCACGTC 57.039 39.130 0.00 0.00 43.14 4.34
3002 3450 4.276183 TGCCTTGCGTCAAAGTGTAAAATA 59.724 37.500 0.00 0.00 0.00 1.40
3301 3750 0.629058 GGGAAATTGTAGGGGAGGCA 59.371 55.000 0.00 0.00 0.00 4.75
3309 3758 3.233919 TAGGGGAGGCACCGACAGT 62.234 63.158 0.00 0.00 40.11 3.55
3310 3759 1.866483 TAGGGGAGGCACCGACAGTA 61.866 60.000 0.00 0.00 40.11 2.74
3311 3760 2.288025 GGGGAGGCACCGACAGTAA 61.288 63.158 0.00 0.00 40.11 2.24
3552 4001 8.041323 CCCTACTATGAGTAATGTTGTCAAAGT 58.959 37.037 0.00 0.00 29.00 2.66
3562 4011 4.427096 TGTTGTCAAAGTCTTTTTGCGA 57.573 36.364 0.00 0.00 0.00 5.10
4043 4492 3.805267 CAGATCAGTTGCCGCTCC 58.195 61.111 0.00 0.00 0.00 4.70
4044 4493 1.078918 CAGATCAGTTGCCGCTCCA 60.079 57.895 0.00 0.00 0.00 3.86
4045 4494 1.088340 CAGATCAGTTGCCGCTCCAG 61.088 60.000 0.00 0.00 0.00 3.86
4046 4495 1.219124 GATCAGTTGCCGCTCCAGA 59.781 57.895 0.00 0.00 0.00 3.86
4047 4496 0.179062 GATCAGTTGCCGCTCCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
4048 4497 0.463295 ATCAGTTGCCGCTCCAGATG 60.463 55.000 0.00 0.00 0.00 2.90
4049 4498 1.078918 CAGTTGCCGCTCCAGATGA 60.079 57.895 0.00 0.00 0.00 2.92
4050 4499 1.088340 CAGTTGCCGCTCCAGATGAG 61.088 60.000 0.00 0.00 44.47 2.90
4051 4500 1.219124 GTTGCCGCTCCAGATGAGA 59.781 57.895 0.00 0.00 44.42 3.27
4052 4501 0.809241 GTTGCCGCTCCAGATGAGAG 60.809 60.000 0.00 0.00 44.42 3.20
4061 4510 4.771590 CTCCAGATGAGAGCAGTATCTC 57.228 50.000 0.00 0.00 44.42 2.75
4062 4511 3.495331 TCCAGATGAGAGCAGTATCTCC 58.505 50.000 1.54 0.00 44.30 3.71
4063 4512 3.139957 TCCAGATGAGAGCAGTATCTCCT 59.860 47.826 1.54 0.00 44.30 3.69
4064 4513 3.507233 CCAGATGAGAGCAGTATCTCCTC 59.493 52.174 1.54 1.81 44.30 3.71
4065 4514 4.401022 CAGATGAGAGCAGTATCTCCTCT 58.599 47.826 5.91 5.91 46.17 3.69
4066 4515 4.828939 CAGATGAGAGCAGTATCTCCTCTT 59.171 45.833 8.30 0.00 44.20 2.85
4067 4516 4.828939 AGATGAGAGCAGTATCTCCTCTTG 59.171 45.833 5.91 0.00 44.20 3.02
4068 4517 2.692557 TGAGAGCAGTATCTCCTCTTGC 59.307 50.000 1.54 0.00 44.30 4.01
4069 4518 2.692557 GAGAGCAGTATCTCCTCTTGCA 59.307 50.000 0.00 0.00 39.93 4.08
4070 4519 3.102972 AGAGCAGTATCTCCTCTTGCAA 58.897 45.455 0.00 0.00 32.27 4.08
4071 4520 3.710677 AGAGCAGTATCTCCTCTTGCAAT 59.289 43.478 0.00 0.00 32.27 3.56
4072 4521 4.898265 AGAGCAGTATCTCCTCTTGCAATA 59.102 41.667 0.00 0.00 32.27 1.90
4073 4522 5.010922 AGAGCAGTATCTCCTCTTGCAATAG 59.989 44.000 0.00 1.42 32.27 1.73
4074 4523 4.898265 AGCAGTATCTCCTCTTGCAATAGA 59.102 41.667 13.08 8.13 0.00 1.98
4075 4524 5.010922 AGCAGTATCTCCTCTTGCAATAGAG 59.989 44.000 13.08 10.59 41.10 2.43
4076 4525 5.229423 CAGTATCTCCTCTTGCAATAGAGC 58.771 45.833 13.08 5.76 40.28 4.09
4077 4526 4.898265 AGTATCTCCTCTTGCAATAGAGCA 59.102 41.667 13.08 0.00 43.99 4.26
4085 4534 2.034104 TGCAATAGAGCAAGAGCCTG 57.966 50.000 0.00 0.00 42.46 4.85
4086 4535 0.662085 GCAATAGAGCAAGAGCCTGC 59.338 55.000 0.00 0.00 43.56 4.85
4092 4541 3.576004 GCAAGAGCCTGCTGTCTG 58.424 61.111 0.00 0.00 39.34 3.51
4093 4542 1.004080 GCAAGAGCCTGCTGTCTGA 60.004 57.895 0.00 0.00 39.34 3.27
4094 4543 0.604780 GCAAGAGCCTGCTGTCTGAA 60.605 55.000 0.00 0.00 39.34 3.02
4095 4544 1.949547 GCAAGAGCCTGCTGTCTGAAT 60.950 52.381 0.00 0.00 39.34 2.57
4096 4545 2.434428 CAAGAGCCTGCTGTCTGAATT 58.566 47.619 0.00 0.00 0.00 2.17
4097 4546 2.818432 CAAGAGCCTGCTGTCTGAATTT 59.182 45.455 0.00 0.00 0.00 1.82
4098 4547 2.434428 AGAGCCTGCTGTCTGAATTTG 58.566 47.619 0.00 0.00 0.00 2.32
4099 4548 2.157738 GAGCCTGCTGTCTGAATTTGT 58.842 47.619 0.00 0.00 0.00 2.83
4100 4549 1.884579 AGCCTGCTGTCTGAATTTGTG 59.115 47.619 0.00 0.00 0.00 3.33
4101 4550 1.881973 GCCTGCTGTCTGAATTTGTGA 59.118 47.619 0.00 0.00 0.00 3.58
4102 4551 2.490903 GCCTGCTGTCTGAATTTGTGAT 59.509 45.455 0.00 0.00 0.00 3.06
4103 4552 3.691118 GCCTGCTGTCTGAATTTGTGATA 59.309 43.478 0.00 0.00 0.00 2.15
4104 4553 4.156556 GCCTGCTGTCTGAATTTGTGATAA 59.843 41.667 0.00 0.00 0.00 1.75
4105 4554 5.335897 GCCTGCTGTCTGAATTTGTGATAAA 60.336 40.000 0.00 0.00 0.00 1.40
4106 4555 6.626623 GCCTGCTGTCTGAATTTGTGATAAAT 60.627 38.462 0.00 0.00 0.00 1.40
4107 4556 7.318141 CCTGCTGTCTGAATTTGTGATAAATT 58.682 34.615 0.00 0.00 32.98 1.82
4108 4557 7.816031 CCTGCTGTCTGAATTTGTGATAAATTT 59.184 33.333 1.47 0.00 30.68 1.82
4109 4558 9.199982 CTGCTGTCTGAATTTGTGATAAATTTT 57.800 29.630 1.47 0.00 30.68 1.82
4110 4559 8.980610 TGCTGTCTGAATTTGTGATAAATTTTG 58.019 29.630 1.47 0.00 30.68 2.44
4111 4560 9.195411 GCTGTCTGAATTTGTGATAAATTTTGA 57.805 29.630 1.47 1.51 30.68 2.69
4122 4571 8.692110 TGTGATAAATTTTGAAGACATCATGC 57.308 30.769 0.00 0.00 38.03 4.06
4123 4572 7.760794 TGTGATAAATTTTGAAGACATCATGCC 59.239 33.333 0.00 0.00 38.03 4.40
4124 4573 7.760794 GTGATAAATTTTGAAGACATCATGCCA 59.239 33.333 0.00 0.00 38.03 4.92
4125 4574 7.760794 TGATAAATTTTGAAGACATCATGCCAC 59.239 33.333 0.00 0.00 38.03 5.01
4126 4575 5.733620 AATTTTGAAGACATCATGCCACT 57.266 34.783 0.00 0.00 38.03 4.00
4127 4576 6.839124 AATTTTGAAGACATCATGCCACTA 57.161 33.333 0.00 0.00 38.03 2.74
4128 4577 5.885230 TTTTGAAGACATCATGCCACTAG 57.115 39.130 0.00 0.00 38.03 2.57
4129 4578 4.824479 TTGAAGACATCATGCCACTAGA 57.176 40.909 0.00 0.00 38.03 2.43
4130 4579 4.824479 TGAAGACATCATGCCACTAGAA 57.176 40.909 0.00 0.00 31.50 2.10
4131 4580 4.763073 TGAAGACATCATGCCACTAGAAG 58.237 43.478 0.00 0.00 31.50 2.85
4132 4581 3.834489 AGACATCATGCCACTAGAAGG 57.166 47.619 0.00 0.00 0.00 3.46
4133 4582 3.378512 AGACATCATGCCACTAGAAGGA 58.621 45.455 9.67 0.00 0.00 3.36
4134 4583 3.972638 AGACATCATGCCACTAGAAGGAT 59.027 43.478 9.67 0.00 0.00 3.24
4135 4584 4.040217 AGACATCATGCCACTAGAAGGATC 59.960 45.833 9.67 0.00 0.00 3.36
4136 4585 3.072184 ACATCATGCCACTAGAAGGATCC 59.928 47.826 2.48 2.48 0.00 3.36
4137 4586 2.050144 TCATGCCACTAGAAGGATCCC 58.950 52.381 8.55 0.00 0.00 3.85
4138 4587 1.770658 CATGCCACTAGAAGGATCCCA 59.229 52.381 8.55 0.00 0.00 4.37
4139 4588 2.196742 TGCCACTAGAAGGATCCCAT 57.803 50.000 8.55 0.00 0.00 4.00
4140 4589 1.770658 TGCCACTAGAAGGATCCCATG 59.229 52.381 8.55 0.00 0.00 3.66
4141 4590 1.072965 GCCACTAGAAGGATCCCATGG 59.927 57.143 8.55 4.14 0.00 3.66
4142 4591 1.701847 CCACTAGAAGGATCCCATGGG 59.298 57.143 26.30 26.30 0.00 4.00
4143 4592 1.072965 CACTAGAAGGATCCCATGGGC 59.927 57.143 27.41 13.15 34.68 5.36
4144 4593 0.695347 CTAGAAGGATCCCATGGGCC 59.305 60.000 27.41 21.97 34.68 5.80
4145 4594 0.271927 TAGAAGGATCCCATGGGCCT 59.728 55.000 27.41 23.94 34.68 5.19
4146 4595 0.271927 AGAAGGATCCCATGGGCCTA 59.728 55.000 27.41 9.87 34.68 3.93
4147 4596 0.695347 GAAGGATCCCATGGGCCTAG 59.305 60.000 27.41 1.65 34.68 3.02
4148 4597 0.271927 AAGGATCCCATGGGCCTAGA 59.728 55.000 27.41 9.00 34.68 2.43
4149 4598 0.500074 AGGATCCCATGGGCCTAGAT 59.500 55.000 27.41 14.09 34.68 1.98
4150 4599 0.622665 GGATCCCATGGGCCTAGATG 59.377 60.000 27.41 0.00 34.68 2.90
4151 4600 0.034670 GATCCCATGGGCCTAGATGC 60.035 60.000 27.41 4.71 34.68 3.91
4152 4601 0.773305 ATCCCATGGGCCTAGATGCA 60.773 55.000 27.41 5.60 34.68 3.96
4153 4602 0.773305 TCCCATGGGCCTAGATGCAT 60.773 55.000 27.41 0.00 34.68 3.96
4154 4603 0.611062 CCCATGGGCCTAGATGCATG 60.611 60.000 20.41 6.57 0.00 4.06
4155 4604 0.402887 CCATGGGCCTAGATGCATGA 59.597 55.000 16.32 0.00 0.00 3.07
4156 4605 1.613520 CCATGGGCCTAGATGCATGAG 60.614 57.143 16.32 0.32 0.00 2.90
4157 4606 0.697079 ATGGGCCTAGATGCATGAGG 59.303 55.000 16.81 16.81 0.00 3.86
4158 4607 0.400381 TGGGCCTAGATGCATGAGGA 60.400 55.000 22.97 4.69 31.45 3.71
4159 4608 0.324285 GGGCCTAGATGCATGAGGAG 59.676 60.000 22.97 7.40 31.45 3.69
4160 4609 0.324285 GGCCTAGATGCATGAGGAGG 59.676 60.000 22.97 15.44 31.45 4.30
4161 4610 0.324285 GCCTAGATGCATGAGGAGGG 59.676 60.000 22.97 9.86 31.45 4.30
4162 4611 2.021262 CCTAGATGCATGAGGAGGGA 57.979 55.000 16.31 0.00 31.45 4.20
4163 4612 2.549082 CCTAGATGCATGAGGAGGGAT 58.451 52.381 16.31 0.00 31.45 3.85
4164 4613 3.717576 CCTAGATGCATGAGGAGGGATA 58.282 50.000 16.31 0.00 31.45 2.59
4165 4614 4.296912 CCTAGATGCATGAGGAGGGATAT 58.703 47.826 16.31 0.00 31.45 1.63
4166 4615 4.720773 CCTAGATGCATGAGGAGGGATATT 59.279 45.833 16.31 0.00 31.45 1.28
4167 4616 4.571369 AGATGCATGAGGAGGGATATTG 57.429 45.455 2.46 0.00 0.00 1.90
4168 4617 3.266254 AGATGCATGAGGAGGGATATTGG 59.734 47.826 2.46 0.00 0.00 3.16
4169 4618 2.421725 TGCATGAGGAGGGATATTGGT 58.578 47.619 0.00 0.00 0.00 3.67
4170 4619 2.107031 TGCATGAGGAGGGATATTGGTG 59.893 50.000 0.00 0.00 0.00 4.17
4171 4620 2.107204 GCATGAGGAGGGATATTGGTGT 59.893 50.000 0.00 0.00 0.00 4.16
4172 4621 3.327757 GCATGAGGAGGGATATTGGTGTA 59.672 47.826 0.00 0.00 0.00 2.90
4173 4622 4.564406 GCATGAGGAGGGATATTGGTGTAG 60.564 50.000 0.00 0.00 0.00 2.74
4174 4623 4.280789 TGAGGAGGGATATTGGTGTAGT 57.719 45.455 0.00 0.00 0.00 2.73
4175 4624 5.412617 TGAGGAGGGATATTGGTGTAGTA 57.587 43.478 0.00 0.00 0.00 1.82
4176 4625 5.784023 TGAGGAGGGATATTGGTGTAGTAA 58.216 41.667 0.00 0.00 0.00 2.24
4177 4626 6.390504 TGAGGAGGGATATTGGTGTAGTAAT 58.609 40.000 0.00 0.00 0.00 1.89
4178 4627 6.849697 TGAGGAGGGATATTGGTGTAGTAATT 59.150 38.462 0.00 0.00 0.00 1.40
4179 4628 7.016268 TGAGGAGGGATATTGGTGTAGTAATTC 59.984 40.741 0.00 0.00 0.00 2.17
4180 4629 6.272558 AGGAGGGATATTGGTGTAGTAATTCC 59.727 42.308 0.00 0.00 0.00 3.01
4181 4630 6.043938 GGAGGGATATTGGTGTAGTAATTCCA 59.956 42.308 0.00 0.00 0.00 3.53
4182 4631 7.079451 AGGGATATTGGTGTAGTAATTCCAG 57.921 40.000 0.00 0.00 0.00 3.86
4183 4632 6.849697 AGGGATATTGGTGTAGTAATTCCAGA 59.150 38.462 0.00 0.00 0.00 3.86
4184 4633 7.016661 AGGGATATTGGTGTAGTAATTCCAGAG 59.983 40.741 0.00 0.00 0.00 3.35
4185 4634 7.162082 GGATATTGGTGTAGTAATTCCAGAGG 58.838 42.308 0.00 0.00 0.00 3.69
4186 4635 4.837093 TTGGTGTAGTAATTCCAGAGGG 57.163 45.455 0.00 0.00 0.00 4.30
4187 4636 3.112263 TGGTGTAGTAATTCCAGAGGGG 58.888 50.000 0.00 0.00 38.37 4.79
4188 4637 2.438392 GGTGTAGTAATTCCAGAGGGGG 59.562 54.545 0.00 0.00 37.22 5.40
4209 4658 2.983592 GGGGGTGAACTGGCAACG 60.984 66.667 0.00 0.00 42.51 4.10
4210 4659 2.203294 GGGGTGAACTGGCAACGT 60.203 61.111 0.00 0.00 42.51 3.99
4211 4660 1.826487 GGGGTGAACTGGCAACGTT 60.826 57.895 0.00 0.00 42.51 3.99
4212 4661 0.535553 GGGGTGAACTGGCAACGTTA 60.536 55.000 0.00 0.00 42.51 3.18
4213 4662 0.872388 GGGTGAACTGGCAACGTTAG 59.128 55.000 0.00 0.00 42.51 2.34
4325 4774 2.026822 TGAGAAGGACCAAGAATCAGCC 60.027 50.000 0.00 0.00 0.00 4.85
4482 4931 6.663734 AGGTTATCAAGGGTAAAGGAATGAG 58.336 40.000 0.00 0.00 0.00 2.90
4496 4945 2.443255 GGAATGAGGCCTGGGAAATCTA 59.557 50.000 12.00 0.00 0.00 1.98
4499 4948 2.562296 TGAGGCCTGGGAAATCTACTT 58.438 47.619 12.00 0.00 0.00 2.24
4613 5062 5.733620 AATTTTGAAGACATCATGCCACT 57.266 34.783 0.00 0.00 38.03 4.00
4671 5120 6.935208 GGGATATTGGTGTAGTAATTCCAGAC 59.065 42.308 0.00 0.00 0.00 3.51
4746 5195 4.613925 TCAACAGAGCTTCATTCTGAGT 57.386 40.909 9.06 0.00 43.75 3.41
4748 5197 6.101650 TCAACAGAGCTTCATTCTGAGTAA 57.898 37.500 9.06 0.00 43.75 2.24
4843 5294 8.997734 AGGTCTATTGGAGAATTCAGATTTACT 58.002 33.333 8.44 0.00 35.37 2.24
4971 5422 5.625426 GCCACTAAGAGAGACATGAATGACA 60.625 44.000 0.00 0.00 0.00 3.58
5021 5472 4.106825 TGATTGATGAAGGGGGCATAATCT 59.893 41.667 0.00 0.00 0.00 2.40
5044 5495 6.829298 TCTCTGATTTTCGGTCTAGTGATACT 59.171 38.462 0.00 0.00 0.00 2.12
5051 5502 5.883685 TCGGTCTAGTGATACTAAGAGGA 57.116 43.478 0.00 0.00 29.00 3.71
5064 5515 4.354662 ACTAAGAGGAAGTCCAAGGTAGG 58.645 47.826 0.00 0.00 38.89 3.18
5082 5533 6.164176 AGGTAGGTAAAACGAATTGACTCAG 58.836 40.000 0.00 0.00 0.00 3.35
5144 5595 3.061848 GGCGTGTTGATGGGGTGG 61.062 66.667 0.00 0.00 0.00 4.61
5151 5602 2.304831 TTGATGGGGTGGATGCCGA 61.305 57.895 0.00 0.00 0.00 5.54
5159 5610 2.582052 GGGTGGATGCCGAATTTATGA 58.418 47.619 0.00 0.00 0.00 2.15
5201 5655 6.376978 CAGTGGATTGACAAAAGCTCTAAAG 58.623 40.000 0.00 0.00 0.00 1.85
5230 5684 0.475906 AGGCAAAGGAGCTGACAAGT 59.524 50.000 0.00 0.00 34.17 3.16
5236 5690 0.471617 AGGAGCTGACAAGTGCAAGT 59.528 50.000 0.00 0.00 0.00 3.16
5329 5783 4.940046 GGAGATGAAGAAGATTGAACTGCA 59.060 41.667 0.00 0.00 0.00 4.41
5423 5878 7.174426 GGTTAAGCTTAGGTTTCTGTACACAAT 59.826 37.037 6.24 0.00 0.00 2.71
5436 5892 5.763204 TCTGTACACAATTTCCTGGTCTTTC 59.237 40.000 0.00 0.00 0.00 2.62
5489 5945 1.899437 TGACCAGATCAAGGGCGACC 61.899 60.000 0.00 0.00 41.75 4.79
5684 6142 1.434622 CGATGAGCCAGGACATGCAC 61.435 60.000 4.58 0.00 0.00 4.57
5802 6260 2.228582 CTGTGGCATGTTTCGAATCCAA 59.771 45.455 0.00 0.00 0.00 3.53
5809 6267 0.526211 GTTTCGAATCCAAGTGGGCC 59.474 55.000 0.00 0.00 36.21 5.80
5817 6275 2.260869 CCAAGTGGGCCGTGTTGAG 61.261 63.158 12.50 1.68 0.00 3.02
5990 6486 4.037327 TCATGCCATTGTTTTCAAGACGAA 59.963 37.500 0.00 0.00 43.41 3.85
5996 6492 6.238076 GCCATTGTTTTCAAGACGAATTTTGT 60.238 34.615 0.00 0.00 43.41 2.83
6017 6513 4.159693 TGTCACTTACTACTGGCACATAGG 59.840 45.833 6.12 0.00 38.20 2.57
6022 6518 5.897824 ACTTACTACTGGCACATAGGTGTAT 59.102 40.000 9.57 0.00 46.95 2.29
6024 6520 2.332063 ACTGGCACATAGGTGTATGC 57.668 50.000 9.57 0.00 46.95 3.14
6047 6543 3.758554 ACTTCAACATGAACCTGGCATAC 59.241 43.478 0.00 0.00 32.21 2.39
6125 6624 5.130292 CTGTGATTCCAGCAAAGATGTTT 57.870 39.130 0.00 0.00 0.00 2.83
6193 6694 2.827800 TGCAATTTTCGAATTGGCCA 57.172 40.000 0.00 0.00 39.79 5.36
6361 6862 6.751425 TGCTGCTATTGTTAATGGAAAATTCG 59.249 34.615 0.00 0.00 0.00 3.34
6363 6864 7.044052 GCTGCTATTGTTAATGGAAAATTCGTC 60.044 37.037 0.00 0.00 0.00 4.20
6367 6868 4.073549 TGTTAATGGAAAATTCGTCCGGT 58.926 39.130 0.00 0.00 38.06 5.28
6380 6881 7.619964 AATTCGTCCGGTAATAGACAAAAAT 57.380 32.000 0.00 0.00 33.08 1.82
6433 6934 6.479660 AGAAATTTACGTTGGACGACTTTGTA 59.520 34.615 7.54 0.00 46.05 2.41
6440 6941 6.446318 ACGTTGGACGACTTTGTACTTTATA 58.554 36.000 7.54 0.00 46.05 0.98
6647 7154 3.869246 GTGGGACGACGAAATATGAATGT 59.131 43.478 0.00 0.00 0.00 2.71
6658 7165 6.253298 ACGAAATATGAATGTTGATTTTGCCG 59.747 34.615 0.00 0.00 0.00 5.69
6948 7459 6.441222 AGTACTCTCATACTTACCATGGGAA 58.559 40.000 18.09 13.93 32.56 3.97
6949 7460 5.878406 ACTCTCATACTTACCATGGGAAG 57.122 43.478 31.80 31.80 32.56 3.46
6950 7461 5.281314 ACTCTCATACTTACCATGGGAAGT 58.719 41.667 38.25 38.25 39.25 3.01
6951 7462 6.441222 ACTCTCATACTTACCATGGGAAGTA 58.559 40.000 39.61 39.61 41.21 2.24
6952 7463 6.551601 ACTCTCATACTTACCATGGGAAGTAG 59.448 42.308 39.63 32.64 40.51 2.57
6953 7464 5.839063 TCTCATACTTACCATGGGAAGTAGG 59.161 44.000 38.84 38.84 40.51 3.18
6960 7471 6.781507 ACTTACCATGGGAAGTAGGAGTATAC 59.218 42.308 36.60 0.00 34.13 1.47
7025 7536 6.231258 TGCTGAGTGATCTGAATGATAAGT 57.769 37.500 0.00 0.00 35.14 2.24
7083 7594 4.578928 CCTTTTCTTTTCGAGGGACTTCAA 59.421 41.667 0.00 0.00 41.55 2.69
7088 7599 4.574828 TCTTTTCGAGGGACTTCAAACTTG 59.425 41.667 0.00 0.00 41.55 3.16
7135 7647 9.529823 TGTTTACCTCACTTTCTATTCTAGAGA 57.470 33.333 0.00 0.00 35.96 3.10
7257 7769 9.153721 CAAAATATTGTTATGTCATGCCTGTTT 57.846 29.630 0.00 0.00 0.00 2.83
7268 7780 1.702182 TGCCTGTTTGAATCCTGCAA 58.298 45.000 0.00 0.00 0.00 4.08
7288 7800 9.381033 CCTGCAATAATTTGATTTGTTGGATTA 57.619 29.630 0.00 0.00 34.60 1.75
7355 7870 3.806507 GCAAAATTCCCCATGAAGTGCAA 60.807 43.478 0.00 0.00 38.29 4.08
7360 7875 3.003394 TCCCCATGAAGTGCAATGTAG 57.997 47.619 0.00 0.00 0.00 2.74
7365 7880 3.624861 CCATGAAGTGCAATGTAGAGGAC 59.375 47.826 0.00 0.00 0.00 3.85
7368 7915 4.318332 TGAAGTGCAATGTAGAGGACTTG 58.682 43.478 4.09 0.00 44.73 3.16
7369 7916 4.202357 TGAAGTGCAATGTAGAGGACTTGT 60.202 41.667 4.09 0.00 44.73 3.16
7370 7917 4.357918 AGTGCAATGTAGAGGACTTGTT 57.642 40.909 0.00 0.00 32.14 2.83
7371 7918 4.718961 AGTGCAATGTAGAGGACTTGTTT 58.281 39.130 0.00 0.00 32.14 2.83
7372 7919 5.865085 AGTGCAATGTAGAGGACTTGTTTA 58.135 37.500 0.00 0.00 32.14 2.01
7373 7920 5.934625 AGTGCAATGTAGAGGACTTGTTTAG 59.065 40.000 0.00 0.00 32.14 1.85
7374 7921 5.701290 GTGCAATGTAGAGGACTTGTTTAGT 59.299 40.000 0.00 0.00 40.71 2.24
7375 7922 6.872020 GTGCAATGTAGAGGACTTGTTTAGTA 59.128 38.462 0.00 0.00 37.17 1.82
7376 7923 7.386848 GTGCAATGTAGAGGACTTGTTTAGTAA 59.613 37.037 0.00 0.00 37.17 2.24
7377 7924 7.934665 TGCAATGTAGAGGACTTGTTTAGTAAA 59.065 33.333 0.00 0.00 37.17 2.01
7378 7925 8.443937 GCAATGTAGAGGACTTGTTTAGTAAAG 58.556 37.037 0.00 0.00 37.17 1.85
7379 7926 9.706691 CAATGTAGAGGACTTGTTTAGTAAAGA 57.293 33.333 0.00 0.00 37.17 2.52
7380 7927 9.708092 AATGTAGAGGACTTGTTTAGTAAAGAC 57.292 33.333 0.00 0.00 37.17 3.01
7381 7928 8.474710 TGTAGAGGACTTGTTTAGTAAAGACT 57.525 34.615 0.00 0.00 37.17 3.24
7382 7929 8.358148 TGTAGAGGACTTGTTTAGTAAAGACTG 58.642 37.037 0.00 0.00 37.17 3.51
7383 7930 7.362802 AGAGGACTTGTTTAGTAAAGACTGT 57.637 36.000 0.00 0.00 37.17 3.55
7384 7931 7.435305 AGAGGACTTGTTTAGTAAAGACTGTC 58.565 38.462 12.71 12.71 37.17 3.51
7385 7932 7.288158 AGAGGACTTGTTTAGTAAAGACTGTCT 59.712 37.037 4.06 4.06 37.17 3.41
7386 7933 7.793036 AGGACTTGTTTAGTAAAGACTGTCTT 58.207 34.615 17.00 17.00 36.19 3.01
7388 7935 8.890718 GGACTTGTTTAGTAAAGACTGTCTTTT 58.109 33.333 33.20 21.93 45.20 2.27
7389 7936 9.917872 GACTTGTTTAGTAAAGACTGTCTTTTC 57.082 33.333 33.20 28.35 45.20 2.29
7390 7937 9.668497 ACTTGTTTAGTAAAGACTGTCTTTTCT 57.332 29.630 33.20 32.17 43.62 2.52
7431 8980 1.675641 GCAATGGTGGAACTCGGCT 60.676 57.895 0.00 0.00 36.74 5.52
7492 9041 0.554792 AATTGCCCATGAGCTAGCCT 59.445 50.000 12.13 0.00 0.00 4.58
7502 9053 4.702131 CCATGAGCTAGCCTGTTAGTTTTT 59.298 41.667 12.13 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.515404 GGGTGTCCCGATCTTTCG 57.485 61.111 0.00 0.00 45.08 3.46
18 19 1.343075 TGATAGAGGTGAGGGTGTCCC 60.343 57.143 0.00 0.00 45.90 4.46
19 20 2.160721 TGATAGAGGTGAGGGTGTCC 57.839 55.000 0.00 0.00 0.00 4.02
20 21 3.571590 AGATGATAGAGGTGAGGGTGTC 58.428 50.000 0.00 0.00 0.00 3.67
21 22 3.697190 AGATGATAGAGGTGAGGGTGT 57.303 47.619 0.00 0.00 0.00 4.16
22 23 4.735369 AGTAGATGATAGAGGTGAGGGTG 58.265 47.826 0.00 0.00 0.00 4.61
23 24 4.417183 TGAGTAGATGATAGAGGTGAGGGT 59.583 45.833 0.00 0.00 0.00 4.34
24 25 4.991776 TGAGTAGATGATAGAGGTGAGGG 58.008 47.826 0.00 0.00 0.00 4.30
25 26 5.652014 GGATGAGTAGATGATAGAGGTGAGG 59.348 48.000 0.00 0.00 0.00 3.86
26 27 6.150976 GTGGATGAGTAGATGATAGAGGTGAG 59.849 46.154 0.00 0.00 0.00 3.51
27 28 6.007076 GTGGATGAGTAGATGATAGAGGTGA 58.993 44.000 0.00 0.00 0.00 4.02
28 29 5.184864 GGTGGATGAGTAGATGATAGAGGTG 59.815 48.000 0.00 0.00 0.00 4.00
29 30 5.075761 AGGTGGATGAGTAGATGATAGAGGT 59.924 44.000 0.00 0.00 0.00 3.85
30 31 5.579047 AGGTGGATGAGTAGATGATAGAGG 58.421 45.833 0.00 0.00 0.00 3.69
31 32 6.244654 TGAGGTGGATGAGTAGATGATAGAG 58.755 44.000 0.00 0.00 0.00 2.43
32 33 6.183361 ACTGAGGTGGATGAGTAGATGATAGA 60.183 42.308 0.00 0.00 0.00 1.98
33 34 6.009589 ACTGAGGTGGATGAGTAGATGATAG 58.990 44.000 0.00 0.00 0.00 2.08
34 35 5.772169 CACTGAGGTGGATGAGTAGATGATA 59.228 44.000 0.00 0.00 39.59 2.15
35 36 4.588106 CACTGAGGTGGATGAGTAGATGAT 59.412 45.833 0.00 0.00 39.59 2.45
36 37 3.956848 CACTGAGGTGGATGAGTAGATGA 59.043 47.826 0.00 0.00 39.59 2.92
37 38 3.956848 TCACTGAGGTGGATGAGTAGATG 59.043 47.826 0.00 0.00 43.17 2.90
38 39 4.214310 CTCACTGAGGTGGATGAGTAGAT 58.786 47.826 0.00 0.00 43.17 1.98
39 40 3.625853 CTCACTGAGGTGGATGAGTAGA 58.374 50.000 0.00 0.00 43.17 2.59
40 41 2.100584 GCTCACTGAGGTGGATGAGTAG 59.899 54.545 8.17 0.00 43.17 2.57
41 42 2.103373 GCTCACTGAGGTGGATGAGTA 58.897 52.381 8.17 0.00 43.17 2.59
42 43 0.901124 GCTCACTGAGGTGGATGAGT 59.099 55.000 8.17 0.00 43.17 3.41
43 44 0.177604 GGCTCACTGAGGTGGATGAG 59.822 60.000 8.17 0.00 43.17 2.90
44 45 0.252421 AGGCTCACTGAGGTGGATGA 60.252 55.000 8.17 0.00 43.17 2.92
45 46 0.177604 GAGGCTCACTGAGGTGGATG 59.822 60.000 10.25 0.00 43.17 3.51
46 47 0.980231 GGAGGCTCACTGAGGTGGAT 60.980 60.000 17.69 0.00 43.17 3.41
47 48 1.610673 GGAGGCTCACTGAGGTGGA 60.611 63.158 17.69 0.00 43.17 4.02
48 49 1.915266 TGGAGGCTCACTGAGGTGG 60.915 63.158 17.69 0.00 43.17 4.61
49 50 1.294780 GTGGAGGCTCACTGAGGTG 59.705 63.158 17.69 0.00 44.23 4.00
50 51 1.915769 GGTGGAGGCTCACTGAGGT 60.916 63.158 17.69 0.00 37.75 3.85
51 52 2.985456 GGTGGAGGCTCACTGAGG 59.015 66.667 17.69 0.00 37.75 3.86
52 53 2.575993 CGGTGGAGGCTCACTGAG 59.424 66.667 17.69 1.21 44.48 3.35
53 54 2.997315 CCGGTGGAGGCTCACTGA 60.997 66.667 17.69 0.00 44.48 3.41
54 55 3.314331 ACCGGTGGAGGCTCACTG 61.314 66.667 17.69 16.02 42.14 3.66
55 56 3.314331 CACCGGTGGAGGCTCACT 61.314 66.667 27.57 0.00 37.75 3.41
65 66 4.394712 GAGGAGTGGCCACCGGTG 62.395 72.222 32.29 28.26 40.02 4.94
69 70 4.416738 GCAGGAGGAGTGGCCACC 62.417 72.222 32.29 22.27 46.86 4.61
70 71 4.767255 CGCAGGAGGAGTGGCCAC 62.767 72.222 29.22 29.22 40.02 5.01
75 76 3.965539 CTTGGGCGCAGGAGGAGTG 62.966 68.421 10.83 0.00 0.00 3.51
76 77 3.710722 CTTGGGCGCAGGAGGAGT 61.711 66.667 10.83 0.00 0.00 3.85
77 78 3.710722 ACTTGGGCGCAGGAGGAG 61.711 66.667 19.96 8.82 0.00 3.69
78 79 4.020617 CACTTGGGCGCAGGAGGA 62.021 66.667 19.96 0.00 0.00 3.71
96 97 4.639135 AATAGAATTTTTCTGGCTCCGC 57.361 40.909 0.07 0.00 40.94 5.54
97 98 5.239525 CCCTAATAGAATTTTTCTGGCTCCG 59.760 44.000 0.07 0.00 40.94 4.63
98 99 5.536538 CCCCTAATAGAATTTTTCTGGCTCC 59.463 44.000 0.07 0.00 40.94 4.70
99 100 5.536538 CCCCCTAATAGAATTTTTCTGGCTC 59.463 44.000 0.07 0.00 40.94 4.70
100 101 5.458595 CCCCCTAATAGAATTTTTCTGGCT 58.541 41.667 0.07 0.00 40.94 4.75
101 102 5.791336 CCCCCTAATAGAATTTTTCTGGC 57.209 43.478 0.07 0.00 40.94 4.85
120 121 0.033109 ATTAAGAGCACTTGGCCCCC 60.033 55.000 6.66 0.00 46.50 5.40
121 122 2.298610 GTATTAAGAGCACTTGGCCCC 58.701 52.381 6.66 0.00 46.50 5.80
122 123 2.945668 CTGTATTAAGAGCACTTGGCCC 59.054 50.000 6.66 0.00 46.50 5.80
123 124 3.873910 TCTGTATTAAGAGCACTTGGCC 58.126 45.455 6.66 0.00 46.50 5.36
124 125 6.203723 CCTAATCTGTATTAAGAGCACTTGGC 59.796 42.308 6.66 0.00 45.30 4.52
125 126 6.708054 CCCTAATCTGTATTAAGAGCACTTGG 59.292 42.308 6.66 0.00 37.53 3.61
126 127 7.500992 TCCCTAATCTGTATTAAGAGCACTTG 58.499 38.462 6.66 0.00 37.53 3.16
127 128 7.202047 CCTCCCTAATCTGTATTAAGAGCACTT 60.202 40.741 1.05 1.05 39.81 3.16
128 129 6.268847 CCTCCCTAATCTGTATTAAGAGCACT 59.731 42.308 0.00 0.00 32.05 4.40
129 130 6.459923 CCTCCCTAATCTGTATTAAGAGCAC 58.540 44.000 0.00 0.00 32.05 4.40
130 131 5.544176 CCCTCCCTAATCTGTATTAAGAGCA 59.456 44.000 0.00 0.00 32.05 4.26
131 132 5.569832 GCCCTCCCTAATCTGTATTAAGAGC 60.570 48.000 0.00 0.00 32.05 4.09
132 133 5.046231 GGCCCTCCCTAATCTGTATTAAGAG 60.046 48.000 0.00 0.00 32.62 2.85
133 134 4.844655 GGCCCTCCCTAATCTGTATTAAGA 59.155 45.833 0.00 0.00 0.00 2.10
134 135 4.597507 TGGCCCTCCCTAATCTGTATTAAG 59.402 45.833 0.00 0.00 0.00 1.85
135 136 4.572978 TGGCCCTCCCTAATCTGTATTAA 58.427 43.478 0.00 0.00 0.00 1.40
136 137 4.222333 TGGCCCTCCCTAATCTGTATTA 57.778 45.455 0.00 0.00 0.00 0.98
137 138 3.074857 TGGCCCTCCCTAATCTGTATT 57.925 47.619 0.00 0.00 0.00 1.89
138 139 2.815357 TGGCCCTCCCTAATCTGTAT 57.185 50.000 0.00 0.00 0.00 2.29
139 140 2.579624 TTGGCCCTCCCTAATCTGTA 57.420 50.000 0.00 0.00 0.00 2.74
140 141 1.566231 CTTTGGCCCTCCCTAATCTGT 59.434 52.381 0.00 0.00 0.00 3.41
141 142 1.752084 GCTTTGGCCCTCCCTAATCTG 60.752 57.143 0.00 0.00 0.00 2.90
142 143 0.553333 GCTTTGGCCCTCCCTAATCT 59.447 55.000 0.00 0.00 0.00 2.40
143 144 0.258774 TGCTTTGGCCCTCCCTAATC 59.741 55.000 0.00 0.00 37.74 1.75
144 145 0.936691 ATGCTTTGGCCCTCCCTAAT 59.063 50.000 0.00 0.00 37.74 1.73
145 146 0.258774 GATGCTTTGGCCCTCCCTAA 59.741 55.000 0.00 0.00 37.74 2.69
146 147 0.918799 TGATGCTTTGGCCCTCCCTA 60.919 55.000 0.00 0.00 37.74 3.53
147 148 1.803453 TTGATGCTTTGGCCCTCCCT 61.803 55.000 0.00 0.00 37.74 4.20
148 149 0.688749 ATTGATGCTTTGGCCCTCCC 60.689 55.000 0.00 0.00 37.74 4.30
149 150 1.197812 AATTGATGCTTTGGCCCTCC 58.802 50.000 0.00 0.00 37.74 4.30
150 151 3.739209 GCTAAATTGATGCTTTGGCCCTC 60.739 47.826 0.00 0.00 34.96 4.30
151 152 2.169144 GCTAAATTGATGCTTTGGCCCT 59.831 45.455 0.00 0.00 34.96 5.19
152 153 2.093553 TGCTAAATTGATGCTTTGGCCC 60.094 45.455 0.00 0.00 38.77 5.80
153 154 3.192466 CTGCTAAATTGATGCTTTGGCC 58.808 45.455 0.00 0.00 38.77 5.36
154 155 2.606272 GCTGCTAAATTGATGCTTTGGC 59.394 45.455 0.00 0.00 39.63 4.52
155 156 3.852286 TGCTGCTAAATTGATGCTTTGG 58.148 40.909 0.00 0.00 0.00 3.28
156 157 5.849357 TTTGCTGCTAAATTGATGCTTTG 57.151 34.783 0.00 0.00 0.00 2.77
157 158 5.759273 TGTTTTGCTGCTAAATTGATGCTTT 59.241 32.000 12.06 0.00 0.00 3.51
158 159 5.299148 TGTTTTGCTGCTAAATTGATGCTT 58.701 33.333 12.06 0.00 0.00 3.91
159 160 4.885413 TGTTTTGCTGCTAAATTGATGCT 58.115 34.783 12.06 0.00 0.00 3.79
160 161 5.349270 TGATGTTTTGCTGCTAAATTGATGC 59.651 36.000 12.06 0.11 0.00 3.91
161 162 6.588756 AGTGATGTTTTGCTGCTAAATTGATG 59.411 34.615 12.06 0.00 0.00 3.07
162 163 6.694447 AGTGATGTTTTGCTGCTAAATTGAT 58.306 32.000 12.06 5.70 0.00 2.57
163 164 6.088016 AGTGATGTTTTGCTGCTAAATTGA 57.912 33.333 12.06 1.43 0.00 2.57
164 165 7.872163 TTAGTGATGTTTTGCTGCTAAATTG 57.128 32.000 12.06 0.00 0.00 2.32
165 166 9.492973 AAATTAGTGATGTTTTGCTGCTAAATT 57.507 25.926 12.06 4.05 0.00 1.82
166 167 9.143631 GAAATTAGTGATGTTTTGCTGCTAAAT 57.856 29.630 12.06 0.00 0.00 1.40
167 168 7.325821 CGAAATTAGTGATGTTTTGCTGCTAAA 59.674 33.333 5.17 5.17 0.00 1.85
168 169 6.801377 CGAAATTAGTGATGTTTTGCTGCTAA 59.199 34.615 0.00 0.00 0.00 3.09
169 170 6.314018 CGAAATTAGTGATGTTTTGCTGCTA 58.686 36.000 0.00 0.00 0.00 3.49
170 171 5.156355 CGAAATTAGTGATGTTTTGCTGCT 58.844 37.500 0.00 0.00 0.00 4.24
171 172 4.201523 GCGAAATTAGTGATGTTTTGCTGC 60.202 41.667 0.00 0.00 38.56 5.25
172 173 4.916831 TGCGAAATTAGTGATGTTTTGCTG 59.083 37.500 9.79 0.00 40.94 4.41
173 174 5.119931 TGCGAAATTAGTGATGTTTTGCT 57.880 34.783 9.79 0.00 40.94 3.91
174 175 6.128849 ACAATGCGAAATTAGTGATGTTTTGC 60.129 34.615 0.00 0.00 40.80 3.68
175 176 7.337150 ACAATGCGAAATTAGTGATGTTTTG 57.663 32.000 0.00 0.00 0.00 2.44
176 177 7.651304 TGAACAATGCGAAATTAGTGATGTTTT 59.349 29.630 0.00 0.00 0.00 2.43
177 178 7.144661 TGAACAATGCGAAATTAGTGATGTTT 58.855 30.769 0.00 0.00 0.00 2.83
178 179 6.676950 TGAACAATGCGAAATTAGTGATGTT 58.323 32.000 0.00 0.00 0.00 2.71
179 180 6.252967 TGAACAATGCGAAATTAGTGATGT 57.747 33.333 0.00 0.00 0.00 3.06
180 181 7.745022 AATGAACAATGCGAAATTAGTGATG 57.255 32.000 0.00 0.00 0.00 3.07
181 182 8.892723 TCTAATGAACAATGCGAAATTAGTGAT 58.107 29.630 0.00 0.00 32.17 3.06
182 183 8.262715 TCTAATGAACAATGCGAAATTAGTGA 57.737 30.769 0.00 0.00 32.17 3.41
183 184 8.894409 TTCTAATGAACAATGCGAAATTAGTG 57.106 30.769 0.00 0.00 32.17 2.74
184 185 9.906660 TTTTCTAATGAACAATGCGAAATTAGT 57.093 25.926 0.00 0.00 32.17 2.24
189 190 8.806634 GCATATTTTCTAATGAACAATGCGAAA 58.193 29.630 0.00 0.00 34.81 3.46
190 191 7.972832 TGCATATTTTCTAATGAACAATGCGAA 59.027 29.630 0.00 0.00 40.69 4.70
191 192 7.479150 TGCATATTTTCTAATGAACAATGCGA 58.521 30.769 0.00 0.00 40.69 5.10
192 193 7.566328 GCTGCATATTTTCTAATGAACAATGCG 60.566 37.037 0.00 0.00 40.69 4.73
193 194 7.223193 TGCTGCATATTTTCTAATGAACAATGC 59.777 33.333 0.00 0.00 39.58 3.56
194 195 8.637281 TGCTGCATATTTTCTAATGAACAATG 57.363 30.769 0.00 0.00 31.02 2.82
195 196 9.656040 TTTGCTGCATATTTTCTAATGAACAAT 57.344 25.926 1.84 0.00 31.02 2.71
196 197 9.656040 ATTTGCTGCATATTTTCTAATGAACAA 57.344 25.926 1.84 0.00 31.02 2.83
205 206 8.857098 ACATCATCTATTTGCTGCATATTTTCT 58.143 29.630 10.75 0.00 0.00 2.52
206 207 9.125906 GACATCATCTATTTGCTGCATATTTTC 57.874 33.333 10.75 0.00 0.00 2.29
207 208 8.635328 TGACATCATCTATTTGCTGCATATTTT 58.365 29.630 10.75 0.00 0.00 1.82
208 209 8.173542 TGACATCATCTATTTGCTGCATATTT 57.826 30.769 10.75 0.00 0.00 1.40
209 210 7.094334 CCTGACATCATCTATTTGCTGCATATT 60.094 37.037 10.75 0.00 0.00 1.28
210 211 6.374613 CCTGACATCATCTATTTGCTGCATAT 59.625 38.462 1.84 7.02 0.00 1.78
211 212 5.704053 CCTGACATCATCTATTTGCTGCATA 59.296 40.000 1.84 0.00 0.00 3.14
212 213 4.519350 CCTGACATCATCTATTTGCTGCAT 59.481 41.667 1.84 0.00 0.00 3.96
213 214 3.881089 CCTGACATCATCTATTTGCTGCA 59.119 43.478 0.00 0.00 0.00 4.41
214 215 3.252701 CCCTGACATCATCTATTTGCTGC 59.747 47.826 0.00 0.00 0.00 5.25
215 216 3.819337 CCCCTGACATCATCTATTTGCTG 59.181 47.826 0.00 0.00 0.00 4.41
216 217 3.181436 CCCCCTGACATCATCTATTTGCT 60.181 47.826 0.00 0.00 0.00 3.91
217 218 3.152341 CCCCCTGACATCATCTATTTGC 58.848 50.000 0.00 0.00 0.00 3.68
254 255 2.283676 TGACGGAGACAGGGGGAC 60.284 66.667 0.00 0.00 0.00 4.46
255 256 2.283676 GTGACGGAGACAGGGGGA 60.284 66.667 0.00 0.00 30.17 4.81
256 257 2.283966 AGTGACGGAGACAGGGGG 60.284 66.667 0.00 0.00 30.17 5.40
257 258 2.973899 CAGTGACGGAGACAGGGG 59.026 66.667 0.00 0.00 30.17 4.79
258 259 2.262915 GCAGTGACGGAGACAGGG 59.737 66.667 0.00 0.00 30.17 4.45
259 260 2.262915 GGCAGTGACGGAGACAGG 59.737 66.667 0.00 0.00 30.17 4.00
260 261 1.892819 ATGGGCAGTGACGGAGACAG 61.893 60.000 0.00 0.00 30.17 3.51
261 262 1.913262 ATGGGCAGTGACGGAGACA 60.913 57.895 0.00 0.00 0.00 3.41
262 263 1.448540 CATGGGCAGTGACGGAGAC 60.449 63.158 0.00 0.00 0.00 3.36
263 264 1.609210 TCATGGGCAGTGACGGAGA 60.609 57.895 0.00 0.00 0.00 3.71
264 265 1.448540 GTCATGGGCAGTGACGGAG 60.449 63.158 0.00 0.00 36.92 4.63
265 266 2.662596 GTCATGGGCAGTGACGGA 59.337 61.111 0.00 0.00 36.92 4.69
268 269 2.094659 CGTCGTCATGGGCAGTGAC 61.095 63.158 10.41 10.41 41.91 3.67
269 270 1.604147 ATCGTCGTCATGGGCAGTGA 61.604 55.000 0.00 0.00 0.00 3.41
270 271 1.153568 ATCGTCGTCATGGGCAGTG 60.154 57.895 0.00 0.00 0.00 3.66
271 272 1.153568 CATCGTCGTCATGGGCAGT 60.154 57.895 0.00 0.00 0.00 4.40
272 273 2.528743 GCATCGTCGTCATGGGCAG 61.529 63.158 0.00 0.00 0.00 4.85
273 274 2.511373 GCATCGTCGTCATGGGCA 60.511 61.111 0.00 0.00 0.00 5.36
285 286 4.091548 CCAAATTTGGCCGCATCG 57.908 55.556 23.81 0.00 42.21 3.84
341 342 1.204941 GCCACTTCTCCTCTTCGCTTA 59.795 52.381 0.00 0.00 0.00 3.09
366 367 1.672854 CGCCTCTAACGACCCATCCA 61.673 60.000 0.00 0.00 0.00 3.41
475 476 4.431416 TGTTCCATGGTACTTGAACAGT 57.569 40.909 20.70 0.00 41.40 3.55
480 481 7.122055 GTGGATAAAATGTTCCATGGTACTTGA 59.878 37.037 20.70 3.44 43.61 3.02
527 528 6.272318 CACATGTGTAACCAACAGTTGATTT 58.728 36.000 18.03 9.67 39.29 2.17
539 540 3.007635 GGGTAAGAGCACATGTGTAACC 58.992 50.000 26.01 22.28 34.36 2.85
731 966 2.483106 TCACTTCTACTCACGACGAAGG 59.517 50.000 0.00 0.00 37.71 3.46
1398 1641 0.036765 TCCAAAACCTCACCCGATCG 60.037 55.000 8.51 8.51 0.00 3.69
1401 1644 0.768622 ACATCCAAAACCTCACCCGA 59.231 50.000 0.00 0.00 0.00 5.14
1449 1693 9.199982 CAAAACATGAAATTAGCAAGAGTTCAT 57.800 29.630 0.00 4.53 39.01 2.57
1450 1694 7.169645 GCAAAACATGAAATTAGCAAGAGTTCA 59.830 33.333 0.00 0.62 33.08 3.18
1451 1695 7.383300 AGCAAAACATGAAATTAGCAAGAGTTC 59.617 33.333 0.00 0.00 0.00 3.01
1452 1696 7.212274 AGCAAAACATGAAATTAGCAAGAGTT 58.788 30.769 0.00 0.00 0.00 3.01
1453 1697 6.752168 AGCAAAACATGAAATTAGCAAGAGT 58.248 32.000 0.00 0.00 0.00 3.24
1456 1700 6.090358 CCTGAGCAAAACATGAAATTAGCAAG 59.910 38.462 0.00 0.00 0.00 4.01
1465 1709 4.211125 TGTAACCCTGAGCAAAACATGAA 58.789 39.130 0.00 0.00 0.00 2.57
1467 1711 4.789012 ATGTAACCCTGAGCAAAACATG 57.211 40.909 0.00 0.00 0.00 3.21
1476 1720 3.981071 TGAGGACAATGTAACCCTGAG 57.019 47.619 0.00 0.00 0.00 3.35
1537 1781 7.001073 GGAAATATGCTTACTCCTCCTTGATT 58.999 38.462 3.47 0.00 0.00 2.57
1705 1949 5.957842 TGATGTAGAAAAACGGAAATGCT 57.042 34.783 0.00 0.00 0.00 3.79
1884 2128 6.812160 ACACTATCTGAATTGTCTAAACGTCC 59.188 38.462 0.00 0.00 0.00 4.79
1904 2148 5.883115 TGACATTGAACTGTTTTGGACACTA 59.117 36.000 0.00 0.00 33.82 2.74
1907 2151 4.439974 GCTGACATTGAACTGTTTTGGACA 60.440 41.667 0.00 0.00 36.65 4.02
1908 2152 4.044426 GCTGACATTGAACTGTTTTGGAC 58.956 43.478 0.00 0.00 0.00 4.02
1951 2195 7.800300 AAGTATTCTACTCCCTCTGTTCTTT 57.200 36.000 0.00 0.00 38.26 2.52
1958 2202 6.020881 ACAGCTAAGTATTCTACTCCCTCT 57.979 41.667 0.00 0.00 38.26 3.69
1959 2203 5.242171 GGACAGCTAAGTATTCTACTCCCTC 59.758 48.000 0.00 0.00 38.26 4.30
2096 2542 9.768662 ATCCAAAATAGGATAAAATTGTCATGC 57.231 29.630 0.00 0.00 46.41 4.06
2284 2730 6.133253 AGAAAGGAGCTCCAAATAAGTCTT 57.867 37.500 33.90 13.59 38.89 3.01
2547 2993 5.063880 AGGTTAAACAGCAGTCACCTTTAG 58.936 41.667 0.00 0.00 31.76 1.85
2600 3046 6.422776 AGTAGATTTTACAGAACAATGGCG 57.577 37.500 0.00 0.00 0.00 5.69
2962 3410 5.347907 GCAAGGCAATTCAGAAATTTCAGAG 59.652 40.000 19.99 9.51 32.69 3.35
3002 3450 5.779529 ATTGCGAATGCCAGAAAGATAAT 57.220 34.783 0.00 0.00 41.78 1.28
3552 4001 4.202101 TGGAAGCAAAGAATCGCAAAAAGA 60.202 37.500 0.00 0.00 0.00 2.52
3562 4011 8.146412 GGCATAGAATATTTGGAAGCAAAGAAT 58.854 33.333 0.00 0.00 0.00 2.40
3659 4108 1.600058 TTGATCTTCCCTGCCATCCT 58.400 50.000 0.00 0.00 0.00 3.24
4026 4475 1.078918 TGGAGCGGCAACTGATCTG 60.079 57.895 1.45 0.00 0.00 2.90
4027 4476 1.220206 CTGGAGCGGCAACTGATCT 59.780 57.895 1.45 0.00 0.00 2.75
4028 4477 0.179062 ATCTGGAGCGGCAACTGATC 60.179 55.000 1.45 0.00 0.00 2.92
4029 4478 0.463295 CATCTGGAGCGGCAACTGAT 60.463 55.000 1.45 6.62 0.00 2.90
4030 4479 1.078918 CATCTGGAGCGGCAACTGA 60.079 57.895 1.45 4.40 0.00 3.41
4031 4480 1.078918 TCATCTGGAGCGGCAACTG 60.079 57.895 1.45 0.00 0.00 3.16
4032 4481 1.220206 CTCATCTGGAGCGGCAACT 59.780 57.895 1.45 0.00 36.69 3.16
4033 4482 0.809241 CTCTCATCTGGAGCGGCAAC 60.809 60.000 1.45 0.00 43.70 4.17
4034 4483 1.519246 CTCTCATCTGGAGCGGCAA 59.481 57.895 1.45 0.00 43.70 4.52
4035 4484 3.086391 GCTCTCATCTGGAGCGGCA 62.086 63.158 1.45 0.00 45.01 5.69
4036 4485 2.280052 GCTCTCATCTGGAGCGGC 60.280 66.667 0.00 0.00 45.01 6.53
4040 4489 3.507233 GGAGATACTGCTCTCATCTGGAG 59.493 52.174 9.29 0.00 42.90 3.86
4041 4490 3.139957 AGGAGATACTGCTCTCATCTGGA 59.860 47.826 9.29 0.00 42.90 3.86
4042 4491 3.499338 AGGAGATACTGCTCTCATCTGG 58.501 50.000 9.29 0.00 42.90 3.86
4043 4492 4.771590 GAGGAGATACTGCTCTCATCTG 57.228 50.000 11.84 0.00 45.23 2.90
4050 4499 3.533606 TTGCAAGAGGAGATACTGCTC 57.466 47.619 11.31 11.31 46.88 4.26
4051 4500 4.898265 TCTATTGCAAGAGGAGATACTGCT 59.102 41.667 20.34 0.00 34.11 4.24
4052 4501 5.207110 TCTATTGCAAGAGGAGATACTGC 57.793 43.478 20.34 0.00 0.00 4.40
4053 4502 5.221402 TGCTCTATTGCAAGAGGAGATACTG 60.221 44.000 20.34 3.04 42.79 2.74
4054 4503 4.898265 TGCTCTATTGCAAGAGGAGATACT 59.102 41.667 20.34 0.00 42.79 2.12
4055 4504 5.207110 TGCTCTATTGCAAGAGGAGATAC 57.793 43.478 20.34 8.36 42.79 2.24
4056 4505 5.876651 TTGCTCTATTGCAAGAGGAGATA 57.123 39.130 20.34 9.38 46.43 1.98
4057 4506 4.767578 TTGCTCTATTGCAAGAGGAGAT 57.232 40.909 20.34 0.00 46.43 2.75
4066 4515 2.015588 GCAGGCTCTTGCTCTATTGCA 61.016 52.381 0.00 0.00 40.89 4.08
4067 4516 0.662085 GCAGGCTCTTGCTCTATTGC 59.338 55.000 0.00 0.00 40.89 3.56
4075 4524 0.604780 TTCAGACAGCAGGCTCTTGC 60.605 55.000 0.00 0.00 44.41 4.01
4076 4525 2.110901 ATTCAGACAGCAGGCTCTTG 57.889 50.000 0.00 0.00 0.00 3.02
4077 4526 2.818432 CAAATTCAGACAGCAGGCTCTT 59.182 45.455 0.00 0.00 0.00 2.85
4078 4527 2.224719 ACAAATTCAGACAGCAGGCTCT 60.225 45.455 0.00 0.00 0.00 4.09
4079 4528 2.095364 CACAAATTCAGACAGCAGGCTC 60.095 50.000 0.00 0.00 0.00 4.70
4080 4529 1.884579 CACAAATTCAGACAGCAGGCT 59.115 47.619 0.00 0.00 0.00 4.58
4081 4530 1.881973 TCACAAATTCAGACAGCAGGC 59.118 47.619 0.00 0.00 0.00 4.85
4082 4531 5.885230 TTATCACAAATTCAGACAGCAGG 57.115 39.130 0.00 0.00 0.00 4.85
4083 4532 8.752766 AAATTTATCACAAATTCAGACAGCAG 57.247 30.769 0.00 0.00 0.00 4.24
4084 4533 8.980610 CAAAATTTATCACAAATTCAGACAGCA 58.019 29.630 0.00 0.00 0.00 4.41
4085 4534 9.195411 TCAAAATTTATCACAAATTCAGACAGC 57.805 29.630 0.00 0.00 0.00 4.40
4096 4545 9.142515 GCATGATGTCTTCAAAATTTATCACAA 57.857 29.630 0.00 0.00 38.03 3.33
4097 4546 7.760794 GGCATGATGTCTTCAAAATTTATCACA 59.239 33.333 0.00 0.00 38.03 3.58
4098 4547 7.760794 TGGCATGATGTCTTCAAAATTTATCAC 59.239 33.333 0.00 0.00 38.03 3.06
4099 4548 7.760794 GTGGCATGATGTCTTCAAAATTTATCA 59.239 33.333 0.00 0.00 38.03 2.15
4100 4549 7.977853 AGTGGCATGATGTCTTCAAAATTTATC 59.022 33.333 0.00 0.00 38.03 1.75
4101 4550 7.844009 AGTGGCATGATGTCTTCAAAATTTAT 58.156 30.769 0.00 0.00 38.03 1.40
4102 4551 7.230849 AGTGGCATGATGTCTTCAAAATTTA 57.769 32.000 0.00 0.00 38.03 1.40
4103 4552 6.105397 AGTGGCATGATGTCTTCAAAATTT 57.895 33.333 0.00 0.00 38.03 1.82
4104 4553 5.733620 AGTGGCATGATGTCTTCAAAATT 57.266 34.783 0.00 0.00 38.03 1.82
4105 4554 6.182627 TCTAGTGGCATGATGTCTTCAAAAT 58.817 36.000 0.00 0.00 38.03 1.82
4106 4555 5.559770 TCTAGTGGCATGATGTCTTCAAAA 58.440 37.500 0.00 0.00 38.03 2.44
4107 4556 5.164620 TCTAGTGGCATGATGTCTTCAAA 57.835 39.130 0.00 0.00 38.03 2.69
4108 4557 4.824479 TCTAGTGGCATGATGTCTTCAA 57.176 40.909 0.00 0.00 38.03 2.69
4109 4558 4.383444 CCTTCTAGTGGCATGATGTCTTCA 60.383 45.833 0.00 0.00 39.12 3.02
4110 4559 4.125703 CCTTCTAGTGGCATGATGTCTTC 58.874 47.826 0.00 0.00 0.00 2.87
4111 4560 3.776969 TCCTTCTAGTGGCATGATGTCTT 59.223 43.478 0.00 0.00 0.00 3.01
4112 4561 3.378512 TCCTTCTAGTGGCATGATGTCT 58.621 45.455 0.00 0.00 0.00 3.41
4113 4562 3.827008 TCCTTCTAGTGGCATGATGTC 57.173 47.619 0.00 0.00 0.00 3.06
4114 4563 3.072184 GGATCCTTCTAGTGGCATGATGT 59.928 47.826 3.84 0.00 0.00 3.06
4115 4564 3.558746 GGGATCCTTCTAGTGGCATGATG 60.559 52.174 12.58 0.00 0.00 3.07
4116 4565 2.641815 GGGATCCTTCTAGTGGCATGAT 59.358 50.000 12.58 0.00 0.00 2.45
4117 4566 2.050144 GGGATCCTTCTAGTGGCATGA 58.950 52.381 12.58 0.00 0.00 3.07
4118 4567 1.770658 TGGGATCCTTCTAGTGGCATG 59.229 52.381 12.58 0.00 0.00 4.06
4119 4568 2.196742 TGGGATCCTTCTAGTGGCAT 57.803 50.000 12.58 0.00 0.00 4.40
4120 4569 1.770658 CATGGGATCCTTCTAGTGGCA 59.229 52.381 12.58 0.00 0.00 4.92
4121 4570 1.072965 CCATGGGATCCTTCTAGTGGC 59.927 57.143 12.58 0.00 0.00 5.01
4122 4571 1.701847 CCCATGGGATCCTTCTAGTGG 59.298 57.143 28.27 10.45 37.50 4.00
4123 4572 1.072965 GCCCATGGGATCCTTCTAGTG 59.927 57.143 36.00 2.92 37.50 2.74
4124 4573 1.439543 GCCCATGGGATCCTTCTAGT 58.560 55.000 36.00 0.00 37.50 2.57
4125 4574 0.695347 GGCCCATGGGATCCTTCTAG 59.305 60.000 36.00 3.73 37.50 2.43
4126 4575 0.271927 AGGCCCATGGGATCCTTCTA 59.728 55.000 36.00 0.00 37.50 2.10
4127 4576 0.271927 TAGGCCCATGGGATCCTTCT 59.728 55.000 36.00 20.42 37.50 2.85
4128 4577 0.695347 CTAGGCCCATGGGATCCTTC 59.305 60.000 36.00 15.24 37.50 3.46
4129 4578 0.271927 TCTAGGCCCATGGGATCCTT 59.728 55.000 36.00 15.65 37.50 3.36
4130 4579 0.500074 ATCTAGGCCCATGGGATCCT 59.500 55.000 36.00 31.03 37.50 3.24
4131 4580 0.622665 CATCTAGGCCCATGGGATCC 59.377 60.000 36.00 25.97 37.50 3.36
4132 4581 0.034670 GCATCTAGGCCCATGGGATC 60.035 60.000 36.00 24.03 37.50 3.36
4133 4582 0.773305 TGCATCTAGGCCCATGGGAT 60.773 55.000 36.00 23.44 37.50 3.85
4134 4583 0.773305 ATGCATCTAGGCCCATGGGA 60.773 55.000 36.00 13.92 37.50 4.37
4135 4584 0.611062 CATGCATCTAGGCCCATGGG 60.611 60.000 27.87 27.87 33.28 4.00
4136 4585 0.402887 TCATGCATCTAGGCCCATGG 59.597 55.000 14.91 4.14 36.58 3.66
4137 4586 1.613520 CCTCATGCATCTAGGCCCATG 60.614 57.143 10.89 10.25 37.11 3.66
4138 4587 0.697079 CCTCATGCATCTAGGCCCAT 59.303 55.000 10.89 0.00 0.00 4.00
4139 4588 0.400381 TCCTCATGCATCTAGGCCCA 60.400 55.000 16.73 1.28 0.00 5.36
4140 4589 0.324285 CTCCTCATGCATCTAGGCCC 59.676 60.000 16.73 0.00 0.00 5.80
4141 4590 0.324285 CCTCCTCATGCATCTAGGCC 59.676 60.000 16.73 0.00 0.00 5.19
4142 4591 0.324285 CCCTCCTCATGCATCTAGGC 59.676 60.000 16.73 0.00 0.00 3.93
4143 4592 2.021262 TCCCTCCTCATGCATCTAGG 57.979 55.000 15.75 15.75 0.00 3.02
4144 4593 5.396548 CCAATATCCCTCCTCATGCATCTAG 60.397 48.000 0.00 0.00 0.00 2.43
4145 4594 4.472470 CCAATATCCCTCCTCATGCATCTA 59.528 45.833 0.00 0.00 0.00 1.98
4146 4595 3.266254 CCAATATCCCTCCTCATGCATCT 59.734 47.826 0.00 0.00 0.00 2.90
4147 4596 3.009916 ACCAATATCCCTCCTCATGCATC 59.990 47.826 0.00 0.00 0.00 3.91
4148 4597 2.991713 ACCAATATCCCTCCTCATGCAT 59.008 45.455 0.00 0.00 0.00 3.96
4149 4598 2.107031 CACCAATATCCCTCCTCATGCA 59.893 50.000 0.00 0.00 0.00 3.96
4150 4599 2.107204 ACACCAATATCCCTCCTCATGC 59.893 50.000 0.00 0.00 0.00 4.06
4151 4600 4.594920 ACTACACCAATATCCCTCCTCATG 59.405 45.833 0.00 0.00 0.00 3.07
4152 4601 4.832492 ACTACACCAATATCCCTCCTCAT 58.168 43.478 0.00 0.00 0.00 2.90
4153 4602 4.280789 ACTACACCAATATCCCTCCTCA 57.719 45.455 0.00 0.00 0.00 3.86
4154 4603 6.936968 ATTACTACACCAATATCCCTCCTC 57.063 41.667 0.00 0.00 0.00 3.71
4155 4604 6.272558 GGAATTACTACACCAATATCCCTCCT 59.727 42.308 0.00 0.00 0.00 3.69
4156 4605 6.043938 TGGAATTACTACACCAATATCCCTCC 59.956 42.308 0.00 0.00 0.00 4.30
4157 4606 7.016268 TCTGGAATTACTACACCAATATCCCTC 59.984 40.741 0.00 0.00 31.85 4.30
4158 4607 6.849697 TCTGGAATTACTACACCAATATCCCT 59.150 38.462 0.00 0.00 31.85 4.20
4159 4608 7.074653 TCTGGAATTACTACACCAATATCCC 57.925 40.000 0.00 0.00 31.85 3.85
4160 4609 7.162082 CCTCTGGAATTACTACACCAATATCC 58.838 42.308 0.00 0.00 31.85 2.59
4161 4610 7.162082 CCCTCTGGAATTACTACACCAATATC 58.838 42.308 0.00 0.00 31.85 1.63
4162 4611 6.044404 CCCCTCTGGAATTACTACACCAATAT 59.956 42.308 0.00 0.00 35.39 1.28
4163 4612 5.368523 CCCCTCTGGAATTACTACACCAATA 59.631 44.000 0.00 0.00 35.39 1.90
4164 4613 4.166144 CCCCTCTGGAATTACTACACCAAT 59.834 45.833 0.00 0.00 35.39 3.16
4165 4614 3.521937 CCCCTCTGGAATTACTACACCAA 59.478 47.826 0.00 0.00 35.39 3.67
4166 4615 3.112263 CCCCTCTGGAATTACTACACCA 58.888 50.000 0.00 0.00 35.39 4.17
4167 4616 2.438392 CCCCCTCTGGAATTACTACACC 59.562 54.545 0.00 0.00 35.39 4.16
4168 4617 3.840124 CCCCCTCTGGAATTACTACAC 57.160 52.381 0.00 0.00 35.39 2.90
4192 4641 2.983592 CGTTGCCAGTTCACCCCC 60.984 66.667 0.00 0.00 0.00 5.40
4193 4642 0.535553 TAACGTTGCCAGTTCACCCC 60.536 55.000 11.99 0.00 33.42 4.95
4194 4643 0.872388 CTAACGTTGCCAGTTCACCC 59.128 55.000 11.99 0.00 33.42 4.61
4195 4644 0.872388 CCTAACGTTGCCAGTTCACC 59.128 55.000 11.99 0.00 33.42 4.02
4196 4645 0.872388 CCCTAACGTTGCCAGTTCAC 59.128 55.000 11.99 0.00 33.42 3.18
4197 4646 0.887387 GCCCTAACGTTGCCAGTTCA 60.887 55.000 11.99 0.00 33.42 3.18
4198 4647 0.887387 TGCCCTAACGTTGCCAGTTC 60.887 55.000 11.99 0.00 33.42 3.01
4199 4648 1.149627 TGCCCTAACGTTGCCAGTT 59.850 52.632 11.99 0.00 35.75 3.16
4200 4649 1.599797 GTGCCCTAACGTTGCCAGT 60.600 57.895 11.99 0.00 0.00 4.00
4201 4650 0.889186 AAGTGCCCTAACGTTGCCAG 60.889 55.000 11.99 0.00 0.00 4.85
4202 4651 1.149627 AAGTGCCCTAACGTTGCCA 59.850 52.632 11.99 0.00 0.00 4.92
4203 4652 1.579429 CAAGTGCCCTAACGTTGCC 59.421 57.895 11.99 0.63 0.00 4.52
4204 4653 0.887387 TCCAAGTGCCCTAACGTTGC 60.887 55.000 11.99 6.60 0.00 4.17
4205 4654 1.821216 ATCCAAGTGCCCTAACGTTG 58.179 50.000 11.99 0.68 0.00 4.10
4206 4655 2.579410 AATCCAAGTGCCCTAACGTT 57.421 45.000 5.88 5.88 0.00 3.99
4207 4656 2.039879 AGAAATCCAAGTGCCCTAACGT 59.960 45.455 0.00 0.00 0.00 3.99
4208 4657 2.711542 AGAAATCCAAGTGCCCTAACG 58.288 47.619 0.00 0.00 0.00 3.18
4209 4658 5.099042 TCTAGAAATCCAAGTGCCCTAAC 57.901 43.478 0.00 0.00 0.00 2.34
4210 4659 4.783227 ACTCTAGAAATCCAAGTGCCCTAA 59.217 41.667 0.00 0.00 0.00 2.69
4211 4660 4.362677 ACTCTAGAAATCCAAGTGCCCTA 58.637 43.478 0.00 0.00 0.00 3.53
4212 4661 3.185455 ACTCTAGAAATCCAAGTGCCCT 58.815 45.455 0.00 0.00 0.00 5.19
4213 4662 3.055094 TGACTCTAGAAATCCAAGTGCCC 60.055 47.826 0.00 0.00 0.00 5.36
4249 4698 3.374988 CGCCTATTTTCAGCACATTCAGA 59.625 43.478 0.00 0.00 0.00 3.27
4325 4774 2.022195 CCTGCATCTTTCCCTGATGTG 58.978 52.381 0.00 0.00 42.21 3.21
4386 4835 4.096681 TCATTTTCCTCTGTCCAGCTAGA 58.903 43.478 0.00 0.00 0.00 2.43
4429 4878 1.155889 CCATGACGTGCTTGCTGTAA 58.844 50.000 0.00 0.00 0.00 2.41
4430 4879 0.320050 TCCATGACGTGCTTGCTGTA 59.680 50.000 0.00 0.00 0.00 2.74
4482 4931 2.505819 TGAGAAGTAGATTTCCCAGGCC 59.494 50.000 0.00 0.00 0.00 5.19
4496 4945 6.119240 TGATCTGATCACCTTTTGAGAAGT 57.881 37.500 16.06 0.00 37.77 3.01
4499 4948 5.752036 ACTGATCTGATCACCTTTTGAGA 57.248 39.130 16.06 0.00 37.77 3.27
4613 5062 0.271927 AGGCCCATGGGATCCTTCTA 59.728 55.000 36.00 0.00 37.50 2.10
4746 5195 8.171400 TGGGTTTCTTGGTATTATCAACCTTTA 58.829 33.333 0.00 0.00 37.91 1.85
4748 5197 6.557568 TGGGTTTCTTGGTATTATCAACCTT 58.442 36.000 0.00 0.00 37.91 3.50
4877 5328 2.549992 CGTCCCTGATGGTGTCAAAGAA 60.550 50.000 0.00 0.00 36.14 2.52
4993 5444 3.398629 TGCCCCCTTCATCAATCATATCA 59.601 43.478 0.00 0.00 0.00 2.15
5021 5472 8.515695 TTAGTATCACTAGACCGAAAATCAGA 57.484 34.615 0.00 0.00 31.47 3.27
5044 5495 4.415224 ACCTACCTTGGACTTCCTCTTA 57.585 45.455 0.00 0.00 36.82 2.10
5051 5502 4.961438 TCGTTTTACCTACCTTGGACTT 57.039 40.909 0.00 0.00 0.00 3.01
5064 5515 6.470877 TGCAAAACTGAGTCAATTCGTTTTAC 59.529 34.615 16.25 12.98 34.86 2.01
5082 5533 1.570813 GGTCTGTTTGGCTGCAAAAC 58.429 50.000 22.66 22.66 37.90 2.43
5144 5595 6.253512 GGTTCAACTTTCATAAATTCGGCATC 59.746 38.462 0.00 0.00 0.00 3.91
5151 5602 7.154656 GCCTTCAGGTTCAACTTTCATAAATT 58.845 34.615 0.00 0.00 37.57 1.82
5159 5610 2.310538 CTGGCCTTCAGGTTCAACTTT 58.689 47.619 3.32 0.00 39.76 2.66
5230 5684 6.240894 ACTCTTCTCATTATCCAAACTTGCA 58.759 36.000 0.00 0.00 0.00 4.08
5236 5690 8.007405 TGACGATACTCTTCTCATTATCCAAA 57.993 34.615 0.00 0.00 0.00 3.28
5324 5778 5.232463 CCATAATCAACAAAGCTTTGCAGT 58.768 37.500 33.72 21.03 41.79 4.40
5329 5783 8.367156 TCTTTAAGCCATAATCAACAAAGCTTT 58.633 29.630 5.69 5.69 39.60 3.51
5436 5892 6.149142 GCCAAGGCTCTGAGATATGATTAAAG 59.851 42.308 9.28 0.00 38.26 1.85
5489 5945 3.057806 GGTTTGGGTCAAAATGTAGGACG 60.058 47.826 0.00 0.00 35.03 4.79
5587 6043 5.752036 TCTTTGGAGAAGATGATGTGTCT 57.248 39.130 0.00 0.00 0.00 3.41
5644 6102 8.909923 TCATCGAGTAGAACTTTGTATATTGGA 58.090 33.333 0.00 0.00 0.00 3.53
5660 6118 1.393603 TGTCCTGGCTCATCGAGTAG 58.606 55.000 0.00 0.00 31.39 2.57
5666 6124 1.434622 CGTGCATGTCCTGGCTCATC 61.435 60.000 0.00 0.00 0.00 2.92
5684 6142 2.987413 TCATTTGCAAGTTGGCTACG 57.013 45.000 4.75 0.00 34.04 3.51
5802 6260 1.198759 ATACCTCAACACGGCCCACT 61.199 55.000 0.00 0.00 0.00 4.00
5809 6267 4.629634 TGTGCTTGAATATACCTCAACACG 59.370 41.667 16.58 0.00 37.48 4.49
5817 6275 4.260948 GCAGCTTCTGTGCTTGAATATACC 60.261 45.833 0.00 0.00 41.98 2.73
5838 6298 1.376424 GCAGCTCAGTTGGCTAGCA 60.376 57.895 18.24 0.00 38.03 3.49
5990 6486 5.373222 TGTGCCAGTAGTAAGTGACAAAAT 58.627 37.500 0.00 0.00 0.00 1.82
5996 6492 4.159693 CACCTATGTGCCAGTAGTAAGTGA 59.840 45.833 0.00 0.00 35.31 3.41
6022 6518 1.955778 CCAGGTTCATGTTGAAGTGCA 59.044 47.619 0.00 0.00 37.00 4.57
6024 6520 1.955778 TGCCAGGTTCATGTTGAAGTG 59.044 47.619 0.00 0.00 37.00 3.16
6047 6543 3.548668 CGCCAACTGATGTAAAATGCATG 59.451 43.478 0.00 0.00 0.00 4.06
6057 6553 1.021390 GCTACTGCGCCAACTGATGT 61.021 55.000 4.18 0.00 0.00 3.06
6236 6737 3.250521 TGACCGACCCGTAATTGTTTTTC 59.749 43.478 0.00 0.00 0.00 2.29
6361 6862 7.136289 TCAACATTTTTGTCTATTACCGGAC 57.864 36.000 9.46 0.00 0.00 4.79
6363 6864 6.472163 GCATCAACATTTTTGTCTATTACCGG 59.528 38.462 0.00 0.00 0.00 5.28
6440 6941 9.396022 TGTCAAACTGAAAGAAGAAAGATACTT 57.604 29.630 0.00 0.00 37.43 2.24
6647 7154 1.950484 GCTCCTCTCCGGCAAAATCAA 60.950 52.381 0.00 0.00 0.00 2.57
6658 7165 5.543507 TCAGATGAATTAAGCTCCTCTCC 57.456 43.478 0.00 0.00 0.00 3.71
6948 7459 4.664064 TCCAGGCTGTAGTATACTCCTACT 59.336 45.833 14.43 0.16 43.54 2.57
6949 7460 4.983053 TCCAGGCTGTAGTATACTCCTAC 58.017 47.826 14.43 2.87 43.54 3.18
6950 7461 5.103813 TGTTCCAGGCTGTAGTATACTCCTA 60.104 44.000 14.43 0.00 43.54 2.94
6951 7462 4.216708 GTTCCAGGCTGTAGTATACTCCT 58.783 47.826 14.43 6.85 43.54 3.69
6952 7463 3.958798 TGTTCCAGGCTGTAGTATACTCC 59.041 47.826 14.43 4.38 43.54 3.85
6953 7464 5.593679 TTGTTCCAGGCTGTAGTATACTC 57.406 43.478 14.43 2.17 43.54 2.59
6960 7471 4.520492 ACAAGAATTTGTTCCAGGCTGTAG 59.480 41.667 14.43 0.00 45.01 2.74
7025 7536 3.492829 GGGTGGATTTTTGCGGTTAACAA 60.493 43.478 8.10 0.00 0.00 2.83
7135 7647 1.833787 AATTACGAGTGGCCCGGTGT 61.834 55.000 0.00 0.00 0.00 4.16
7251 7763 7.098477 TCAAATTATTGCAGGATTCAAACAGG 58.902 34.615 0.00 0.00 36.45 4.00
7257 7769 8.937884 CAACAAATCAAATTATTGCAGGATTCA 58.062 29.630 0.00 0.00 36.45 2.57
7355 7870 9.091220 AGTCTTTACTAAACAAGTCCTCTACAT 57.909 33.333 0.00 0.00 39.80 2.29
7360 7875 7.435305 AGACAGTCTTTACTAAACAAGTCCTC 58.565 38.462 0.00 0.00 39.80 3.71
7374 7921 9.769093 CGAAAGAAAAAGAAAAGACAGTCTTTA 57.231 29.630 25.71 0.00 45.19 1.85
7376 7923 6.747739 GCGAAAGAAAAAGAAAAGACAGTCTT 59.252 34.615 10.27 10.27 38.59 3.01
7377 7924 6.128007 TGCGAAAGAAAAAGAAAAGACAGTCT 60.128 34.615 0.00 0.00 0.00 3.24
7378 7925 6.027749 TGCGAAAGAAAAAGAAAAGACAGTC 58.972 36.000 0.00 0.00 0.00 3.51
7379 7926 5.949735 TGCGAAAGAAAAAGAAAAGACAGT 58.050 33.333 0.00 0.00 0.00 3.55
7380 7927 6.869421 TTGCGAAAGAAAAAGAAAAGACAG 57.131 33.333 0.00 0.00 0.00 3.51
7381 7928 6.310224 CCTTTGCGAAAGAAAAAGAAAAGACA 59.690 34.615 9.37 0.00 38.39 3.41
7382 7929 6.530181 TCCTTTGCGAAAGAAAAAGAAAAGAC 59.470 34.615 9.37 0.00 38.39 3.01
7383 7930 6.530181 GTCCTTTGCGAAAGAAAAAGAAAAGA 59.470 34.615 9.37 0.00 38.39 2.52
7384 7931 6.310224 TGTCCTTTGCGAAAGAAAAAGAAAAG 59.690 34.615 9.37 0.00 38.39 2.27
7385 7932 6.090223 GTGTCCTTTGCGAAAGAAAAAGAAAA 59.910 34.615 9.37 0.00 38.39 2.29
7386 7933 5.575218 GTGTCCTTTGCGAAAGAAAAAGAAA 59.425 36.000 9.37 0.00 38.39 2.52
7387 7934 5.099575 GTGTCCTTTGCGAAAGAAAAAGAA 58.900 37.500 9.37 0.00 38.39 2.52
7388 7935 4.156922 TGTGTCCTTTGCGAAAGAAAAAGA 59.843 37.500 9.37 0.00 38.39 2.52
7389 7936 4.420168 TGTGTCCTTTGCGAAAGAAAAAG 58.580 39.130 9.37 0.00 38.39 2.27
7390 7937 4.442375 TGTGTCCTTTGCGAAAGAAAAA 57.558 36.364 9.37 0.00 38.39 1.94
7391 7938 4.358851 CATGTGTCCTTTGCGAAAGAAAA 58.641 39.130 9.37 0.00 41.02 2.29
7392 7939 3.795150 GCATGTGTCCTTTGCGAAAGAAA 60.795 43.478 9.37 0.00 41.02 2.52
7393 7940 2.287547 GCATGTGTCCTTTGCGAAAGAA 60.288 45.455 9.37 0.00 41.02 2.52
7394 7941 1.266718 GCATGTGTCCTTTGCGAAAGA 59.733 47.619 9.37 0.00 41.02 2.52
7395 7942 1.001487 TGCATGTGTCCTTTGCGAAAG 60.001 47.619 0.00 0.00 39.23 2.62
7396 7943 1.028130 TGCATGTGTCCTTTGCGAAA 58.972 45.000 0.00 0.00 39.23 3.46
7397 7944 1.028130 TTGCATGTGTCCTTTGCGAA 58.972 45.000 0.00 0.00 39.23 4.70
7398 7945 1.068402 CATTGCATGTGTCCTTTGCGA 60.068 47.619 0.00 0.00 39.23 5.10
7399 7946 1.342555 CATTGCATGTGTCCTTTGCG 58.657 50.000 0.00 0.00 39.23 4.85
7431 8980 2.884997 AATCCGCATAACCAGCCGCA 62.885 55.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.