Multiple sequence alignment - TraesCS1B01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G252400 chr1B 100.000 4650 0 0 1 4650 445177318 445181967 0.000000e+00 8588.0
1 TraesCS1B01G252400 chr1B 76.705 176 23 12 4481 4640 370161825 370161652 1.070000e-11 82.4
2 TraesCS1B01G252400 chr1D 94.671 2627 94 12 1 2589 330524790 330527408 0.000000e+00 4034.0
3 TraesCS1B01G252400 chr1D 90.147 1979 114 34 2586 4494 330527437 330529404 0.000000e+00 2499.0
4 TraesCS1B01G252400 chr1D 86.538 156 13 4 4491 4639 49220591 49220437 1.040000e-36 165.0
5 TraesCS1B01G252400 chr1A 94.134 2148 92 16 473 2589 427481793 427483937 0.000000e+00 3238.0
6 TraesCS1B01G252400 chr1A 92.303 1598 83 16 2587 4155 427483968 427485554 0.000000e+00 2233.0
7 TraesCS1B01G252400 chr1A 90.594 202 16 1 4296 4494 427485774 427485975 9.920000e-67 265.0
8 TraesCS1B01G252400 chr1A 91.429 175 11 4 4187 4357 427485611 427485785 2.160000e-58 237.0
9 TraesCS1B01G252400 chr5D 78.341 434 69 13 136 561 367780711 367780295 1.660000e-64 257.0
10 TraesCS1B01G252400 chr5D 86.000 150 17 3 4493 4639 42065270 42065418 1.730000e-34 158.0
11 TraesCS1B01G252400 chr5D 85.926 135 17 2 1 135 42986493 42986625 4.850000e-30 143.0
12 TraesCS1B01G252400 chr5D 83.824 136 22 0 1 136 359161157 359161292 3.780000e-26 130.0
13 TraesCS1B01G252400 chr5D 84.685 111 17 0 451 561 42987034 42987144 1.370000e-20 111.0
14 TraesCS1B01G252400 chr4A 87.879 165 4 1 4493 4641 743957330 743957166 3.700000e-41 180.0
15 TraesCS1B01G252400 chr4A 84.768 151 18 4 4493 4638 66146186 66146036 3.750000e-31 147.0
16 TraesCS1B01G252400 chr4B 87.805 164 4 1 4493 4640 510313388 510313225 1.330000e-40 178.0
17 TraesCS1B01G252400 chr4B 85.256 156 18 2 4489 4639 523312223 523312378 6.230000e-34 156.0
18 TraesCS1B01G252400 chr7B 87.730 163 4 1 4493 4639 697802738 697802576 4.780000e-40 176.0
19 TraesCS1B01G252400 chr7B 85.714 133 19 0 1 133 463828318 463828186 1.740000e-29 141.0
20 TraesCS1B01G252400 chr3B 86.585 164 6 1 4492 4639 420875837 420875674 2.880000e-37 167.0
21 TraesCS1B01G252400 chr3B 84.962 133 18 2 1 132 547483289 547483420 2.920000e-27 134.0
22 TraesCS1B01G252400 chr3A 87.970 133 16 0 3 135 157656629 157656497 1.730000e-34 158.0
23 TraesCS1B01G252400 chr5B 85.526 152 16 4 4489 4639 271942008 271941862 2.240000e-33 154.0
24 TraesCS1B01G252400 chr6B 84.516 155 16 6 4489 4639 481616778 481616928 3.750000e-31 147.0
25 TraesCS1B01G252400 chr2B 83.529 170 11 6 4487 4640 11357445 11357277 4.850000e-30 143.0
26 TraesCS1B01G252400 chr2B 83.824 136 21 1 1 136 402010463 402010597 1.360000e-25 128.0
27 TraesCS1B01G252400 chr2D 84.444 135 21 0 1 135 333832752 333832618 2.920000e-27 134.0
28 TraesCS1B01G252400 chr2D 84.211 133 18 3 2 133 569414585 569414715 4.880000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G252400 chr1B 445177318 445181967 4649 False 8588.00 8588 100.000 1 4650 1 chr1B.!!$F1 4649
1 TraesCS1B01G252400 chr1D 330524790 330529404 4614 False 3266.50 4034 92.409 1 4494 2 chr1D.!!$F1 4493
2 TraesCS1B01G252400 chr1A 427481793 427485975 4182 False 1493.25 3238 92.115 473 4494 4 chr1A.!!$F1 4021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 901 0.324614 ACTGTCGGCAATCATCACCA 59.675 50.0 0.00 0.0 0.00 4.17 F
1549 1593 0.247736 CTTGGACCTCTCCTCCAACG 59.752 60.0 0.00 0.0 41.92 4.10 F
2969 3051 0.036483 TCAGGCTAGCGTTGCATTGA 60.036 50.0 7.31 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 2246 0.104671 GCTGCTCTGATGGAGTCTCC 59.895 60.0 12.40 12.4 43.62 3.71 R
3272 3354 0.250467 TTGCTCACAAGAGGGCTCAC 60.250 55.0 0.00 0.0 42.33 3.51 R
4126 4237 0.108041 CTTGCAATTGGGGACATGCC 60.108 55.0 7.72 0.0 44.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 6.144563 CGAATAATAGTACACCATCAGCAGTG 59.855 42.308 0.00 0.00 39.93 3.66
151 152 3.686726 CCATCAGCAGTGACTTCCTTAAC 59.313 47.826 0.00 0.00 34.75 2.01
171 172 7.337942 CCTTAACAGATGACTAAGAATTGCCTT 59.662 37.037 7.55 0.00 0.00 4.35
201 202 3.773860 TTGCTTCTTTTGAAACGCTCA 57.226 38.095 0.00 0.00 38.07 4.26
272 274 5.511025 GCTTCAATTTGAGCTCTTCGATTTC 59.489 40.000 16.19 0.00 0.00 2.17
311 313 7.446625 ACAAAGTACTGCATTCTGATCTTCTTT 59.553 33.333 0.00 0.00 0.00 2.52
314 316 8.715191 AGTACTGCATTCTGATCTTCTTTAAG 57.285 34.615 0.00 0.00 0.00 1.85
315 317 8.535335 AGTACTGCATTCTGATCTTCTTTAAGA 58.465 33.333 0.00 0.00 45.63 2.10
339 341 2.693797 CAATCGCTGCTTTTGTGTCT 57.306 45.000 0.00 0.00 0.00 3.41
360 362 5.234543 GTCTGACTCTTGTGTTGTAACCTTC 59.765 44.000 0.00 0.00 0.00 3.46
383 385 3.305676 GCTTCTAGCTCTCGGATGCATTA 60.306 47.826 0.00 0.00 38.45 1.90
489 493 4.261072 GCGATCTGCATCATGATTGAAAGT 60.261 41.667 5.16 0.00 45.45 2.66
496 500 6.282167 TGCATCATGATTGAAAGTGTTGTTT 58.718 32.000 5.16 0.00 34.96 2.83
502 506 7.381948 TCATGATTGAAAGTGTTGTTTATGCAC 59.618 33.333 0.00 0.00 0.00 4.57
548 552 4.324402 GGCTCGCACAATACTTTTGAAATG 59.676 41.667 0.00 0.00 0.00 2.32
576 580 2.515926 AGAATCATCGCACGCTATGT 57.484 45.000 3.78 0.00 0.00 2.29
609 613 4.641396 GGGGGAAAGAGGTCAAAATTTTG 58.359 43.478 22.40 22.40 39.48 2.44
626 630 6.743575 AATTTTGAGGTTCGAAGGATGTAG 57.256 37.500 0.00 0.00 0.00 2.74
640 644 7.042051 TCGAAGGATGTAGAAAAACTTGTTGAG 60.042 37.037 0.00 0.00 0.00 3.02
678 683 6.614160 TGTTTTGCATGATCAAGTCACTATG 58.386 36.000 0.00 0.00 40.28 2.23
772 777 0.456653 GACATTGCCGTGGACATTGC 60.457 55.000 0.00 0.00 0.00 3.56
841 850 1.132640 GCAGCCGCGTTACTTTCTG 59.867 57.895 4.92 1.76 0.00 3.02
870 879 2.240493 GCACTATTGCCCGTACTCAT 57.760 50.000 0.00 0.00 43.66 2.90
889 898 2.470983 TCAACTGTCGGCAATCATCA 57.529 45.000 0.00 0.00 0.00 3.07
890 899 2.076100 TCAACTGTCGGCAATCATCAC 58.924 47.619 0.00 0.00 0.00 3.06
892 901 0.324614 ACTGTCGGCAATCATCACCA 59.675 50.000 0.00 0.00 0.00 4.17
897 927 2.351726 GTCGGCAATCATCACCAGTAAC 59.648 50.000 0.00 0.00 0.00 2.50
964 996 6.970043 TGAGAAACCATTTAAACACGAAACTG 59.030 34.615 0.00 0.00 0.00 3.16
993 1028 3.181476 ACAAGAAAATAATGCCATCGCCC 60.181 43.478 0.00 0.00 0.00 6.13
1549 1593 0.247736 CTTGGACCTCTCCTCCAACG 59.752 60.000 0.00 0.00 41.92 4.10
1881 1925 2.768492 GCAGAATGGGGCGCTTGAG 61.768 63.158 7.64 0.00 35.86 3.02
1977 2021 1.448497 GTCCAACCCGTCTGTTCCA 59.552 57.895 0.00 0.00 0.00 3.53
2039 2083 2.445155 CAAGGGGTTGGGGAAGGG 59.555 66.667 0.00 0.00 0.00 3.95
2042 2086 2.861974 GGGGTTGGGGAAGGGTGA 60.862 66.667 0.00 0.00 0.00 4.02
2120 2164 6.533367 GTGTTCTTCTACTGCTATTGGAAGAG 59.467 42.308 0.00 0.00 41.80 2.85
2153 2197 3.134127 GAAGGGACATGGTGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
2157 2201 2.890474 GGACATGGTGCGGCTACG 60.890 66.667 0.00 0.00 44.63 3.51
2202 2246 1.079405 TTTTAGCAGGGACGAGCCG 60.079 57.895 0.00 0.00 37.63 5.52
2248 2292 0.307760 CGTGCTGTTGGACCAGAAAC 59.692 55.000 0.00 0.00 34.23 2.78
2443 2487 3.622060 AAGGTCCGGCATCCCAACG 62.622 63.158 0.00 0.00 0.00 4.10
2609 2686 9.330063 CATGTTGACCAGTGATAGTAATATGTT 57.670 33.333 0.00 0.00 0.00 2.71
2610 2687 9.905713 ATGTTGACCAGTGATAGTAATATGTTT 57.094 29.630 0.00 0.00 0.00 2.83
2611 2688 9.161629 TGTTGACCAGTGATAGTAATATGTTTG 57.838 33.333 0.00 0.00 0.00 2.93
2612 2689 9.378551 GTTGACCAGTGATAGTAATATGTTTGA 57.621 33.333 0.00 0.00 0.00 2.69
2614 2691 9.546428 TGACCAGTGATAGTAATATGTTTGATG 57.454 33.333 0.00 0.00 0.00 3.07
2615 2692 9.764363 GACCAGTGATAGTAATATGTTTGATGA 57.236 33.333 0.00 0.00 0.00 2.92
2640 2720 7.161404 AGAAGTTACTGATGTAATGCACTTCA 58.839 34.615 15.05 0.00 41.04 3.02
2644 2724 5.362556 ACTGATGTAATGCACTTCAACAC 57.637 39.130 0.00 0.00 39.91 3.32
2646 2726 6.230472 ACTGATGTAATGCACTTCAACACTA 58.770 36.000 0.00 0.00 39.91 2.74
2695 2776 9.341899 GATTTTTGTTGTTAATGACGAAGCTAT 57.658 29.630 0.00 0.00 0.00 2.97
2779 2860 9.988815 GATACAATATTGTCTCATTGGTACTCT 57.011 33.333 24.00 0.00 42.35 3.24
2780 2861 9.988815 ATACAATATTGTCTCATTGGTACTCTC 57.011 33.333 24.00 0.00 42.35 3.20
2781 2862 7.851228 ACAATATTGTCTCATTGGTACTCTCA 58.149 34.615 15.47 0.00 36.50 3.27
2786 2867 5.482006 TGTCTCATTGGTACTCTCATGTTG 58.518 41.667 0.00 0.00 0.00 3.33
2871 2953 9.982651 TTCTGATGTACTGCCTCTTATATTTAC 57.017 33.333 0.00 0.00 0.00 2.01
2969 3051 0.036483 TCAGGCTAGCGTTGCATTGA 60.036 50.000 7.31 0.00 0.00 2.57
3085 3167 5.246656 TGGGATGTCTTTCTTGCATGAATTT 59.753 36.000 15.04 0.55 0.00 1.82
3178 3260 0.611200 TTTCAGATTTCGGCCTCGGA 59.389 50.000 0.00 0.00 36.95 4.55
3220 3302 1.633852 GAGCAGCACCTTCTTCGCAG 61.634 60.000 0.00 0.00 0.00 5.18
3223 3305 0.601046 CAGCACCTTCTTCGCAGTCA 60.601 55.000 0.00 0.00 0.00 3.41
3227 3309 2.417379 GCACCTTCTTCGCAGTCAGATA 60.417 50.000 0.00 0.00 0.00 1.98
3246 3328 0.323629 AGGATTGGCGTCGAAAAGGA 59.676 50.000 0.00 0.00 0.00 3.36
3272 3354 0.540454 TCTGCAGCCAGATTCCTCAG 59.460 55.000 9.47 0.00 42.98 3.35
3323 3405 0.320771 CTACCAAGCACCAGAAGCGT 60.321 55.000 0.00 0.00 37.01 5.07
3349 3431 1.531149 ACATTGAAACCGTCGCAGAAG 59.469 47.619 0.00 0.00 39.69 2.85
3493 3575 0.322816 AACCATCCGCTGATGTGCTT 60.323 50.000 15.83 3.03 45.78 3.91
3593 3675 1.731433 TAATCCCGAGCGAAGACCGG 61.731 60.000 0.00 0.00 42.07 5.28
3654 3736 5.510671 CGCTTCAGTTTCAAGCTAGAAAAA 58.489 37.500 0.00 0.00 43.57 1.94
3808 3910 5.631119 ACCTACCATGTGTTAGCTTTTCTT 58.369 37.500 0.00 0.00 0.00 2.52
3809 3911 5.705905 ACCTACCATGTGTTAGCTTTTCTTC 59.294 40.000 0.00 0.00 0.00 2.87
3810 3912 5.940470 CCTACCATGTGTTAGCTTTTCTTCT 59.060 40.000 0.00 0.00 0.00 2.85
3899 4006 2.487934 CACAGCTGCAGTTAACTCAGT 58.512 47.619 23.86 14.55 0.00 3.41
4074 4183 8.552083 AAAAGGAAGCATGATATTTTTGTTCC 57.448 30.769 0.00 0.00 33.74 3.62
4075 4184 7.486407 AAGGAAGCATGATATTTTTGTTCCT 57.514 32.000 0.00 0.00 43.50 3.36
4076 4185 7.105241 AGGAAGCATGATATTTTTGTTCCTC 57.895 36.000 0.00 0.00 38.53 3.71
4079 4188 7.983484 GGAAGCATGATATTTTTGTTCCTCAAT 59.017 33.333 0.00 0.00 35.84 2.57
4080 4189 9.374838 GAAGCATGATATTTTTGTTCCTCAATT 57.625 29.630 0.00 0.00 35.84 2.32
4081 4190 8.712285 AGCATGATATTTTTGTTCCTCAATTG 57.288 30.769 0.00 0.00 35.84 2.32
4082 4191 7.279313 AGCATGATATTTTTGTTCCTCAATTGC 59.721 33.333 0.00 0.00 35.84 3.56
4085 4194 8.899427 TGATATTTTTGTTCCTCAATTGCAAA 57.101 26.923 1.71 2.44 35.84 3.68
4092 4201 9.995003 TTTTGTTCCTCAATTGCAAATATAAGT 57.005 25.926 1.71 0.00 35.84 2.24
4093 4202 9.638239 TTTGTTCCTCAATTGCAAATATAAGTC 57.362 29.630 1.71 0.00 35.84 3.01
4095 4204 9.679661 TGTTCCTCAATTGCAAATATAAGTCTA 57.320 29.630 1.71 0.00 0.00 2.59
4123 4234 0.469494 TGATAGGCATGGACGCATGT 59.531 50.000 0.00 0.00 35.16 3.21
4124 4235 1.151668 GATAGGCATGGACGCATGTC 58.848 55.000 0.00 0.00 44.72 3.06
4125 4236 5.383121 ATGATAGGCATGGACGCATGTCA 62.383 47.826 9.76 0.00 45.56 3.58
4126 4237 7.805339 TATGATAGGCATGGACGCATGTCAG 62.805 48.000 9.76 0.00 44.89 3.51
4145 4258 0.108041 GGCATGTCCCCAATTGCAAG 60.108 55.000 4.94 0.00 36.82 4.01
4155 4268 5.359576 GTCCCCAATTGCAAGTATCATGTTA 59.640 40.000 4.94 0.00 0.00 2.41
4158 4271 6.460123 CCCCAATTGCAAGTATCATGTTACTC 60.460 42.308 15.21 6.37 31.19 2.59
4160 4273 7.191551 CCAATTGCAAGTATCATGTTACTCAG 58.808 38.462 15.21 12.28 31.19 3.35
4161 4274 7.066163 CCAATTGCAAGTATCATGTTACTCAGA 59.934 37.037 15.21 4.90 31.19 3.27
4165 4278 9.481340 TTGCAAGTATCATGTTACTCAGATATC 57.519 33.333 15.21 0.00 31.19 1.63
4166 4279 8.641541 TGCAAGTATCATGTTACTCAGATATCA 58.358 33.333 15.21 5.33 31.19 2.15
4167 4280 8.920665 GCAAGTATCATGTTACTCAGATATCAC 58.079 37.037 15.21 0.00 31.19 3.06
4168 4281 9.971922 CAAGTATCATGTTACTCAGATATCACA 57.028 33.333 15.21 0.00 31.19 3.58
4170 4283 9.973450 AGTATCATGTTACTCAGATATCACAAC 57.027 33.333 10.14 2.39 0.00 3.32
4171 4284 9.197694 GTATCATGTTACTCAGATATCACAACC 57.802 37.037 5.32 0.00 0.00 3.77
4172 4285 6.582636 TCATGTTACTCAGATATCACAACCC 58.417 40.000 5.32 0.00 0.00 4.11
4173 4286 6.384015 TCATGTTACTCAGATATCACAACCCT 59.616 38.462 5.32 0.00 0.00 4.34
4174 4287 6.620877 TGTTACTCAGATATCACAACCCTT 57.379 37.500 5.32 0.00 0.00 3.95
4175 4288 7.016153 TGTTACTCAGATATCACAACCCTTT 57.984 36.000 5.32 0.00 0.00 3.11
4176 4289 7.458397 TGTTACTCAGATATCACAACCCTTTT 58.542 34.615 5.32 0.00 0.00 2.27
4177 4290 7.390440 TGTTACTCAGATATCACAACCCTTTTG 59.610 37.037 5.32 0.00 0.00 2.44
4178 4291 5.880901 ACTCAGATATCACAACCCTTTTGT 58.119 37.500 5.32 0.00 0.00 2.83
4185 4298 2.605030 CACAACCCTTTTGTGTGTGTG 58.395 47.619 8.65 0.00 43.40 3.82
4187 4300 2.029470 ACAACCCTTTTGTGTGTGTGTG 60.029 45.455 0.00 0.00 0.00 3.82
4188 4301 1.917872 ACCCTTTTGTGTGTGTGTGT 58.082 45.000 0.00 0.00 0.00 3.72
4189 4302 1.543802 ACCCTTTTGTGTGTGTGTGTG 59.456 47.619 0.00 0.00 0.00 3.82
4190 4303 1.543802 CCCTTTTGTGTGTGTGTGTGT 59.456 47.619 0.00 0.00 0.00 3.72
4191 4304 2.029470 CCCTTTTGTGTGTGTGTGTGTT 60.029 45.455 0.00 0.00 0.00 3.32
4192 4305 2.985809 CCTTTTGTGTGTGTGTGTGTTG 59.014 45.455 0.00 0.00 0.00 3.33
4193 4306 2.713895 TTTGTGTGTGTGTGTGTTGG 57.286 45.000 0.00 0.00 0.00 3.77
4194 4307 0.884514 TTGTGTGTGTGTGTGTTGGG 59.115 50.000 0.00 0.00 0.00 4.12
4195 4308 0.962855 TGTGTGTGTGTGTGTTGGGG 60.963 55.000 0.00 0.00 0.00 4.96
4234 4374 6.656693 ACTTTTGGTTCCTCAGATATCACAAG 59.343 38.462 5.32 0.00 0.00 3.16
4314 4456 5.339695 CCTCTAGTGTTCTAAGGACCTCTCT 60.340 48.000 0.00 0.00 31.92 3.10
4316 4458 3.436243 AGTGTTCTAAGGACCTCTCTGG 58.564 50.000 0.00 0.00 42.93 3.86
4379 4571 6.681538 TCCATAGGATTTTTGATTCATGGGA 58.318 36.000 0.00 0.00 33.91 4.37
4500 4702 9.939802 TTTACTTTTGTAGAATTCTACTCCCTC 57.060 33.333 34.33 16.26 46.74 4.30
4501 4703 6.948589 ACTTTTGTAGAATTCTACTCCCTCC 58.051 40.000 34.33 15.66 46.74 4.30
4502 4704 5.593679 TTTGTAGAATTCTACTCCCTCCG 57.406 43.478 34.33 0.00 46.74 4.63
4503 4705 4.246712 TGTAGAATTCTACTCCCTCCGT 57.753 45.455 34.33 4.27 46.74 4.69
4504 4706 4.607239 TGTAGAATTCTACTCCCTCCGTT 58.393 43.478 34.33 4.08 46.74 4.44
4505 4707 4.643784 TGTAGAATTCTACTCCCTCCGTTC 59.356 45.833 34.33 13.47 46.74 3.95
4506 4708 3.032459 AGAATTCTACTCCCTCCGTTCC 58.968 50.000 6.06 0.00 0.00 3.62
4507 4709 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
4508 4710 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
4509 4711 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
4510 4712 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4511 4713 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4512 4714 3.958798 TCTACTCCCTCCGTTCCTAAATG 59.041 47.826 0.00 0.00 0.00 2.32
4513 4715 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4514 4716 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4515 4717 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4516 4718 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4517 4719 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4518 4720 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4519 4721 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4520 4722 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4521 4723 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4522 4724 7.325694 CCTCCGTTCCTAAATGTAAGTCTTTA 58.674 38.462 0.00 0.00 0.00 1.85
4523 4725 7.985752 CCTCCGTTCCTAAATGTAAGTCTTTAT 59.014 37.037 0.00 0.00 0.00 1.40
4549 4751 8.970859 AGAGATTCCACTAGGTAAAATGAATG 57.029 34.615 0.00 0.00 35.89 2.67
4550 4752 8.772250 AGAGATTCCACTAGGTAAAATGAATGA 58.228 33.333 0.00 0.00 35.89 2.57
4551 4753 9.396022 GAGATTCCACTAGGTAAAATGAATGAA 57.604 33.333 0.00 0.00 35.89 2.57
4552 4754 9.927081 AGATTCCACTAGGTAAAATGAATGAAT 57.073 29.630 0.00 0.00 35.89 2.57
4554 4756 8.519799 TTCCACTAGGTAAAATGAATGAATCC 57.480 34.615 0.00 0.00 35.89 3.01
4555 4757 7.638444 TCCACTAGGTAAAATGAATGAATCCA 58.362 34.615 0.00 0.00 35.89 3.41
4556 4758 7.556275 TCCACTAGGTAAAATGAATGAATCCAC 59.444 37.037 0.00 0.00 35.89 4.02
4557 4759 7.339212 CCACTAGGTAAAATGAATGAATCCACA 59.661 37.037 0.00 0.00 0.00 4.17
4558 4760 8.184192 CACTAGGTAAAATGAATGAATCCACAC 58.816 37.037 0.00 0.00 0.00 3.82
4559 4761 8.109634 ACTAGGTAAAATGAATGAATCCACACT 58.890 33.333 0.00 0.00 0.00 3.55
4560 4762 7.781324 AGGTAAAATGAATGAATCCACACTT 57.219 32.000 0.00 0.00 0.00 3.16
4561 4763 8.877864 AGGTAAAATGAATGAATCCACACTTA 57.122 30.769 0.00 0.00 0.00 2.24
4562 4764 9.308000 AGGTAAAATGAATGAATCCACACTTAA 57.692 29.630 0.00 0.00 0.00 1.85
4563 4765 9.921637 GGTAAAATGAATGAATCCACACTTAAA 57.078 29.630 0.00 0.00 0.00 1.52
4567 4769 8.483307 AATGAATGAATCCACACTTAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
4568 4770 6.990798 TGAATGAATCCACACTTAAAATGCA 58.009 32.000 0.00 0.00 0.00 3.96
4569 4771 7.613585 TGAATGAATCCACACTTAAAATGCAT 58.386 30.769 0.00 0.00 0.00 3.96
4570 4772 7.760794 TGAATGAATCCACACTTAAAATGCATC 59.239 33.333 0.00 0.00 0.00 3.91
4571 4773 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
4572 4774 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
4573 4775 8.523915 TGAATCCACACTTAAAATGCATCTAT 57.476 30.769 0.00 0.00 0.00 1.98
4574 4776 9.625747 TGAATCCACACTTAAAATGCATCTATA 57.374 29.630 0.00 0.00 0.00 1.31
4630 4832 9.590451 TGTACAAAGACTTATATTTAGGAACGG 57.410 33.333 0.00 0.00 0.00 4.44
4631 4833 9.807649 GTACAAAGACTTATATTTAGGAACGGA 57.192 33.333 0.00 0.00 0.00 4.69
4632 4834 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4633 4835 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4634 4836 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4635 4837 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4636 4838 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4637 4839 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4638 4840 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4639 4841 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
4640 4842 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
4641 4843 2.431954 TAGGAACGGAGGGAGTAGTG 57.568 55.000 0.00 0.00 0.00 2.74
4642 4844 0.324460 AGGAACGGAGGGAGTAGTGG 60.324 60.000 0.00 0.00 0.00 4.00
4643 4845 0.614134 GGAACGGAGGGAGTAGTGGT 60.614 60.000 0.00 0.00 0.00 4.16
4644 4846 0.816373 GAACGGAGGGAGTAGTGGTC 59.184 60.000 0.00 0.00 0.00 4.02
4645 4847 0.113776 AACGGAGGGAGTAGTGGTCA 59.886 55.000 0.00 0.00 0.00 4.02
4646 4848 0.335361 ACGGAGGGAGTAGTGGTCAT 59.665 55.000 0.00 0.00 0.00 3.06
4647 4849 0.747255 CGGAGGGAGTAGTGGTCATG 59.253 60.000 0.00 0.00 0.00 3.07
4648 4850 1.685180 CGGAGGGAGTAGTGGTCATGA 60.685 57.143 0.00 0.00 0.00 3.07
4649 4851 2.683768 GGAGGGAGTAGTGGTCATGAT 58.316 52.381 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 9.660180 AATTCTTAGTCATCTGTTAAGGAAGTC 57.340 33.333 0.00 0.00 0.00 3.01
151 152 6.939132 ATGAAGGCAATTCTTAGTCATCTG 57.061 37.500 2.99 0.00 38.83 2.90
171 172 8.967218 CGTTTCAAAAGAAGCAATAAGAAATGA 58.033 29.630 0.00 0.00 34.41 2.57
201 202 3.713764 AGATGGATCGGGACAGAAAATCT 59.286 43.478 0.00 0.00 0.00 2.40
339 341 4.116961 CGAAGGTTACAACACAAGAGTCA 58.883 43.478 0.00 0.00 0.00 3.41
489 493 6.615264 TTTACTAACGGTGCATAAACAACA 57.385 33.333 0.00 0.00 0.00 3.33
502 506 8.999431 AGCCATCATATTGTAATTTACTAACGG 58.001 33.333 7.99 0.45 0.00 4.44
548 552 4.434588 GCGTGCGATGATTCTAATGTTTTC 59.565 41.667 0.00 0.00 0.00 2.29
609 613 5.932883 AGTTTTTCTACATCCTTCGAACCTC 59.067 40.000 0.00 0.00 0.00 3.85
626 630 4.207019 CGTTGGATGCTCAACAAGTTTTTC 59.793 41.667 14.79 0.00 45.16 2.29
640 644 2.599612 GCAAAACAAAAGCGTTGGATGC 60.600 45.455 7.89 9.88 31.23 3.91
678 683 9.508567 GCTGTTTGTAGAATTTTATCTTGATCC 57.491 33.333 0.00 0.00 0.00 3.36
695 700 2.695359 GTCCATCCTTCGCTGTTTGTA 58.305 47.619 0.00 0.00 0.00 2.41
772 777 5.630061 TCTTCAACGCAAATGTACATCATG 58.370 37.500 9.23 12.37 36.81 3.07
870 879 2.076100 GTGATGATTGCCGACAGTTGA 58.924 47.619 0.00 0.00 0.00 3.18
889 898 9.216117 GTTATTCTATTGTCACTTGTTACTGGT 57.784 33.333 0.00 0.00 0.00 4.00
890 899 9.214957 TGTTATTCTATTGTCACTTGTTACTGG 57.785 33.333 0.00 0.00 0.00 4.00
897 927 5.734498 GCGCTTGTTATTCTATTGTCACTTG 59.266 40.000 0.00 0.00 0.00 3.16
949 981 4.080969 ACGTTGCAGTTTCGTGTTTAAA 57.919 36.364 7.32 0.00 36.46 1.52
964 996 5.157781 TGGCATTATTTTCTTGTACGTTGC 58.842 37.500 0.00 0.00 0.00 4.17
993 1028 1.752501 CGGCGGCACTCATTAGAACG 61.753 60.000 10.53 0.00 0.00 3.95
1085 1120 2.647158 GGAGGAAGAGGAACGCGGT 61.647 63.158 12.47 1.91 0.00 5.68
1178 1222 3.306595 CTGAAGGAGAGCAGCGCCA 62.307 63.158 2.29 0.00 39.21 5.69
1370 1414 3.846405 TTGAGGTGGCGGAGGGAGT 62.846 63.158 0.00 0.00 0.00 3.85
1452 1496 2.410466 GTAGAGGACGAGGCTCTGG 58.590 63.158 13.50 0.00 0.00 3.86
1675 1719 3.526534 GGTTGTAGGACAGATTGAGCTC 58.473 50.000 6.82 6.82 0.00 4.09
1977 2021 1.229853 ACCGGACTCCCCATCCTTT 60.230 57.895 9.46 0.00 33.70 3.11
2039 2083 2.297033 AGAACAATGGCCACAATGTCAC 59.703 45.455 8.16 11.56 39.73 3.67
2042 2086 1.619827 CCAGAACAATGGCCACAATGT 59.380 47.619 8.16 11.61 42.34 2.71
2063 2107 1.211212 TCAAGATCCCTGCCACATCAG 59.789 52.381 0.00 0.00 0.00 2.90
2120 2164 1.004862 CCTTCTCCTTGGGGGAAACTC 59.995 57.143 0.38 0.00 44.58 3.01
2153 2197 3.626154 GACTCTTTCGAGCCCGTAG 57.374 57.895 0.00 0.00 41.09 3.51
2202 2246 0.104671 GCTGCTCTGATGGAGTCTCC 59.895 60.000 12.40 12.40 43.62 3.71
2248 2292 3.122297 GCTCATCGAGATCAAACCTCAG 58.878 50.000 0.00 0.00 0.00 3.35
2286 2330 1.593196 CACTCTTCCCGAGCACAAAA 58.407 50.000 0.00 0.00 43.85 2.44
2609 2686 7.823799 TGCATTACATCAGTAACTTCTCATCAA 59.176 33.333 0.00 0.00 42.60 2.57
2610 2687 7.278646 GTGCATTACATCAGTAACTTCTCATCA 59.721 37.037 0.00 0.00 42.60 3.07
2611 2688 7.493971 AGTGCATTACATCAGTAACTTCTCATC 59.506 37.037 0.00 0.00 42.60 2.92
2612 2689 7.334090 AGTGCATTACATCAGTAACTTCTCAT 58.666 34.615 0.00 0.00 42.60 2.90
2613 2690 6.701340 AGTGCATTACATCAGTAACTTCTCA 58.299 36.000 0.00 0.00 42.60 3.27
2614 2691 7.331934 TGAAGTGCATTACATCAGTAACTTCTC 59.668 37.037 12.01 0.00 42.60 2.87
2615 2692 7.161404 TGAAGTGCATTACATCAGTAACTTCT 58.839 34.615 12.01 1.65 42.60 2.85
2618 2695 6.710295 TGTTGAAGTGCATTACATCAGTAACT 59.290 34.615 0.00 0.00 42.60 2.24
2619 2696 6.797033 GTGTTGAAGTGCATTACATCAGTAAC 59.203 38.462 0.00 0.00 42.60 2.50
2620 2697 6.710295 AGTGTTGAAGTGCATTACATCAGTAA 59.290 34.615 0.00 0.00 43.83 2.24
2640 2720 7.777095 TCACAAAGGCAAAACTAATTAGTGTT 58.223 30.769 18.70 16.37 36.50 3.32
2644 2724 8.447833 TCGTATCACAAAGGCAAAACTAATTAG 58.552 33.333 11.05 11.05 0.00 1.73
2646 2726 7.209471 TCGTATCACAAAGGCAAAACTAATT 57.791 32.000 0.00 0.00 0.00 1.40
2695 2776 6.897966 AGAGATATCACTTGAACTCCAGGTAA 59.102 38.462 5.32 0.00 32.90 2.85
2820 2901 9.847224 AAAGAAGTAGATTACCTCTCAAAACAA 57.153 29.630 0.00 0.00 35.28 2.83
2821 2902 9.490379 GAAAGAAGTAGATTACCTCTCAAAACA 57.510 33.333 0.00 0.00 35.28 2.83
2822 2903 9.713713 AGAAAGAAGTAGATTACCTCTCAAAAC 57.286 33.333 0.00 0.00 35.28 2.43
2837 2919 5.971763 AGGCAGTACATCAGAAAGAAGTAG 58.028 41.667 0.00 0.00 31.64 2.57
2871 2953 4.567159 GCAAAGAATTACTCCCTCTGTACG 59.433 45.833 0.00 0.00 0.00 3.67
2969 3051 7.778382 AGGTTTACCTGAAAGTAACAAATCAGT 59.222 33.333 0.00 0.00 46.55 3.41
3085 3167 4.400251 CCGTGTACATACTTCTTGGGACTA 59.600 45.833 0.00 0.00 0.00 2.59
3141 3223 5.751509 TCTGAAATATACGGTTCCATGTTCG 59.248 40.000 0.00 0.00 0.00 3.95
3143 3225 8.519799 AAATCTGAAATATACGGTTCCATGTT 57.480 30.769 0.00 0.00 0.00 2.71
3220 3302 1.337071 TCGACGCCAATCCTATCTGAC 59.663 52.381 0.00 0.00 0.00 3.51
3223 3305 3.458189 CTTTTCGACGCCAATCCTATCT 58.542 45.455 0.00 0.00 0.00 1.98
3227 3309 0.323629 TCCTTTTCGACGCCAATCCT 59.676 50.000 0.00 0.00 0.00 3.24
3246 3328 1.498264 ATCTGGCTGCAGACTCTGAT 58.502 50.000 22.80 17.79 33.58 2.90
3272 3354 0.250467 TTGCTCACAAGAGGGCTCAC 60.250 55.000 0.00 0.00 42.33 3.51
3323 3405 3.109619 GCGACGGTTTCAATGTTTTCAA 58.890 40.909 0.00 0.00 0.00 2.69
3349 3431 3.322254 CACCATAGGAGTAGACATCCCAC 59.678 52.174 0.00 0.00 37.57 4.61
3493 3575 2.592993 CCTGGCGAGGAAAGGGTCA 61.593 63.158 9.58 0.00 42.93 4.02
3593 3675 5.471456 AGGTTTCTGTGACATTTCTCATCAC 59.529 40.000 0.00 0.00 42.54 3.06
3594 3676 5.624159 AGGTTTCTGTGACATTTCTCATCA 58.376 37.500 0.00 0.00 0.00 3.07
3654 3736 2.203294 GCCCTTTCGTGGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
3764 3863 5.848369 AGGTACCTAACTTGTTAAAGGTCCT 59.152 40.000 14.41 12.52 41.44 3.85
3808 3910 1.059098 TGCTCTGCTCCCAAAGAAGA 58.941 50.000 0.00 0.00 37.33 2.87
3809 3911 1.743958 CATGCTCTGCTCCCAAAGAAG 59.256 52.381 0.00 0.00 30.80 2.85
3810 3912 1.074405 ACATGCTCTGCTCCCAAAGAA 59.926 47.619 0.00 0.00 0.00 2.52
3899 4006 2.287393 CCACGTGGTACATTCATCGA 57.713 50.000 26.95 0.00 44.52 3.59
4067 4176 9.638239 GACTTATATTTGCAATTGAGGAACAAA 57.362 29.630 10.34 9.88 42.03 2.83
4068 4177 9.023962 AGACTTATATTTGCAATTGAGGAACAA 57.976 29.630 10.34 0.15 42.95 2.83
4069 4178 8.579850 AGACTTATATTTGCAATTGAGGAACA 57.420 30.769 10.34 0.00 0.00 3.18
4072 4181 9.507329 GGATAGACTTATATTTGCAATTGAGGA 57.493 33.333 10.34 0.00 0.00 3.71
4073 4182 9.512588 AGGATAGACTTATATTTGCAATTGAGG 57.487 33.333 10.34 0.00 0.00 3.86
4087 4196 8.901472 TGCCTATCATACAAGGATAGACTTAT 57.099 34.615 9.52 0.00 44.47 1.73
4089 4198 7.310921 CCATGCCTATCATACAAGGATAGACTT 60.311 40.741 9.52 0.00 44.47 3.01
4090 4199 6.155910 CCATGCCTATCATACAAGGATAGACT 59.844 42.308 9.52 0.00 44.47 3.24
4091 4200 6.155221 TCCATGCCTATCATACAAGGATAGAC 59.845 42.308 9.52 0.14 44.47 2.59
4092 4201 6.155221 GTCCATGCCTATCATACAAGGATAGA 59.845 42.308 9.52 0.00 44.47 1.98
4093 4202 6.344500 GTCCATGCCTATCATACAAGGATAG 58.656 44.000 0.00 0.00 42.42 2.08
4095 4204 4.323028 CGTCCATGCCTATCATACAAGGAT 60.323 45.833 0.00 0.00 34.58 3.24
4096 4205 3.006859 CGTCCATGCCTATCATACAAGGA 59.993 47.826 0.00 0.00 34.58 3.36
4097 4206 3.329386 CGTCCATGCCTATCATACAAGG 58.671 50.000 0.00 0.00 33.19 3.61
4123 4234 0.971959 GCAATTGGGGACATGCCTGA 60.972 55.000 7.72 0.00 39.82 3.86
4124 4235 1.259142 TGCAATTGGGGACATGCCTG 61.259 55.000 7.72 0.00 44.00 4.85
4125 4236 0.544833 TTGCAATTGGGGACATGCCT 60.545 50.000 7.72 0.00 44.00 4.75
4126 4237 0.108041 CTTGCAATTGGGGACATGCC 60.108 55.000 7.72 0.00 44.00 4.40
4128 4239 3.700539 TGATACTTGCAATTGGGGACATG 59.299 43.478 7.72 0.00 42.32 3.21
4129 4240 3.979911 TGATACTTGCAATTGGGGACAT 58.020 40.909 7.72 0.00 42.32 3.06
4130 4241 3.448093 TGATACTTGCAATTGGGGACA 57.552 42.857 7.72 0.00 39.83 4.02
4131 4242 3.701040 ACATGATACTTGCAATTGGGGAC 59.299 43.478 7.72 0.00 0.00 4.46
4135 4248 7.066163 TCTGAGTAACATGATACTTGCAATTGG 59.934 37.037 15.91 0.00 36.28 3.16
4145 4258 9.197694 GGTTGTGATATCTGAGTAACATGATAC 57.802 37.037 0.00 1.46 0.00 2.24
4155 4268 5.880901 ACAAAAGGGTTGTGATATCTGAGT 58.119 37.500 3.98 0.00 0.00 3.41
4166 4279 2.029470 CACACACACACAAAAGGGTTGT 60.029 45.455 0.00 0.00 0.00 3.32
4167 4280 2.029470 ACACACACACACAAAAGGGTTG 60.029 45.455 0.00 0.00 0.00 3.77
4168 4281 2.029470 CACACACACACACAAAAGGGTT 60.029 45.455 0.00 0.00 0.00 4.11
4169 4282 1.543802 CACACACACACACAAAAGGGT 59.456 47.619 0.00 0.00 0.00 4.34
4170 4283 1.543802 ACACACACACACACAAAAGGG 59.456 47.619 0.00 0.00 0.00 3.95
4171 4284 2.985809 CAACACACACACACACAAAAGG 59.014 45.455 0.00 0.00 0.00 3.11
4172 4285 2.985809 CCAACACACACACACACAAAAG 59.014 45.455 0.00 0.00 0.00 2.27
4173 4286 2.288457 CCCAACACACACACACACAAAA 60.288 45.455 0.00 0.00 0.00 2.44
4174 4287 1.270826 CCCAACACACACACACACAAA 59.729 47.619 0.00 0.00 0.00 2.83
4175 4288 0.884514 CCCAACACACACACACACAA 59.115 50.000 0.00 0.00 0.00 3.33
4176 4289 0.962855 CCCCAACACACACACACACA 60.963 55.000 0.00 0.00 0.00 3.72
4177 4290 1.662438 CCCCCAACACACACACACAC 61.662 60.000 0.00 0.00 0.00 3.82
4178 4291 1.379176 CCCCCAACACACACACACA 60.379 57.895 0.00 0.00 0.00 3.72
4179 4292 3.520402 CCCCCAACACACACACAC 58.480 61.111 0.00 0.00 0.00 3.82
4194 4307 3.146847 CAAAAGTACTCAACACTCCCCC 58.853 50.000 0.00 0.00 0.00 5.40
4195 4308 3.146847 CCAAAAGTACTCAACACTCCCC 58.853 50.000 0.00 0.00 0.00 4.81
4197 4310 4.275196 GGAACCAAAAGTACTCAACACTCC 59.725 45.833 0.00 0.00 0.00 3.85
4286 4428 4.496360 GTCCTTAGAACACTAGAGGCAAC 58.504 47.826 0.00 0.00 0.00 4.17
4314 4456 7.190335 TCCGAATAGAAAATCCTTTAGACCA 57.810 36.000 0.00 0.00 0.00 4.02
4369 4561 8.517878 CCTACATATCAAACAATCCCATGAATC 58.482 37.037 0.00 0.00 0.00 2.52
4370 4562 8.226810 TCCTACATATCAAACAATCCCATGAAT 58.773 33.333 0.00 0.00 0.00 2.57
4374 4566 7.177878 GGATCCTACATATCAAACAATCCCAT 58.822 38.462 3.84 0.00 0.00 4.00
4379 4571 9.818270 AATGATGGATCCTACATATCAAACAAT 57.182 29.630 14.23 0.00 32.21 2.71
4494 4696 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4495 4697 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4496 4698 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4497 4699 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4498 4700 8.943909 ATAAAGACTTACATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4524 4726 8.772250 TCATTCATTTTACCTAGTGGAATCTCT 58.228 33.333 0.00 0.00 37.04 3.10
4525 4727 8.964476 TCATTCATTTTACCTAGTGGAATCTC 57.036 34.615 0.00 0.00 37.04 2.75
4526 4728 9.927081 ATTCATTCATTTTACCTAGTGGAATCT 57.073 29.630 0.00 0.00 37.04 2.40
4528 4730 9.136323 GGATTCATTCATTTTACCTAGTGGAAT 57.864 33.333 0.00 0.00 37.04 3.01
4529 4731 8.112822 TGGATTCATTCATTTTACCTAGTGGAA 58.887 33.333 0.00 0.00 37.04 3.53
4530 4732 7.556275 GTGGATTCATTCATTTTACCTAGTGGA 59.444 37.037 0.00 0.00 37.04 4.02
4531 4733 7.339212 TGTGGATTCATTCATTTTACCTAGTGG 59.661 37.037 0.00 0.00 39.83 4.00
4532 4734 8.184192 GTGTGGATTCATTCATTTTACCTAGTG 58.816 37.037 0.00 0.00 0.00 2.74
4533 4735 8.109634 AGTGTGGATTCATTCATTTTACCTAGT 58.890 33.333 0.00 0.00 0.00 2.57
4534 4736 8.511604 AGTGTGGATTCATTCATTTTACCTAG 57.488 34.615 0.00 0.00 0.00 3.02
4535 4737 8.877864 AAGTGTGGATTCATTCATTTTACCTA 57.122 30.769 0.00 0.00 0.00 3.08
4536 4738 7.781324 AAGTGTGGATTCATTCATTTTACCT 57.219 32.000 0.00 0.00 0.00 3.08
4537 4739 9.921637 TTTAAGTGTGGATTCATTCATTTTACC 57.078 29.630 0.00 0.00 0.00 2.85
4541 4743 8.938906 GCATTTTAAGTGTGGATTCATTCATTT 58.061 29.630 0.00 0.00 0.00 2.32
4542 4744 8.095792 TGCATTTTAAGTGTGGATTCATTCATT 58.904 29.630 0.00 0.00 0.00 2.57
4543 4745 7.613585 TGCATTTTAAGTGTGGATTCATTCAT 58.386 30.769 0.00 0.00 0.00 2.57
4544 4746 6.990798 TGCATTTTAAGTGTGGATTCATTCA 58.009 32.000 0.00 0.00 0.00 2.57
4545 4747 7.977853 AGATGCATTTTAAGTGTGGATTCATTC 59.022 33.333 0.00 0.00 0.00 2.67
4546 4748 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
4547 4749 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
4548 4750 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
4604 4806 9.590451 CCGTTCCTAAATATAAGTCTTTGTACA 57.410 33.333 0.00 0.00 0.00 2.90
4605 4807 9.807649 TCCGTTCCTAAATATAAGTCTTTGTAC 57.192 33.333 0.00 0.00 0.00 2.90
4607 4809 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4608 4810 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4609 4811 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4610 4812 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4611 4813 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4612 4814 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4613 4815 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4614 4816 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4615 4817 7.232127 CACTACTCCCTCCGTTCCTAAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
4616 4818 6.718454 CACTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
4617 4819 5.539193 CACTACTCCCTCCGTTCCTAAATAT 59.461 44.000 0.00 0.00 0.00 1.28
4618 4820 4.891756 CACTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
4619 4821 3.705072 CACTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
4620 4822 3.094572 CACTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
4621 4823 2.622452 CCACTACTCCCTCCGTTCCTAA 60.622 54.545 0.00 0.00 0.00 2.69
4622 4824 1.064166 CCACTACTCCCTCCGTTCCTA 60.064 57.143 0.00 0.00 0.00 2.94
4623 4825 0.324460 CCACTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
4624 4826 0.614134 ACCACTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
4625 4827 0.816373 GACCACTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
4626 4828 0.113776 TGACCACTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
4627 4829 0.335361 ATGACCACTACTCCCTCCGT 59.665 55.000 0.00 0.00 0.00 4.69
4628 4830 0.747255 CATGACCACTACTCCCTCCG 59.253 60.000 0.00 0.00 0.00 4.63
4629 4831 2.160721 TCATGACCACTACTCCCTCC 57.839 55.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.