Multiple sequence alignment - TraesCS1B01G252200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G252200 chr1B 100.000 5547 0 0 1 5547 444866377 444860831 0.000000e+00 10244
1 TraesCS1B01G252200 chr1B 84.507 142 16 3 5307 5448 111778808 111778943 9.690000e-28 135
2 TraesCS1B01G252200 chr1D 95.844 4355 155 18 833 5170 329795803 329791458 0.000000e+00 7016
3 TraesCS1B01G252200 chr1D 92.701 137 9 1 5171 5307 329791258 329791123 4.380000e-46 196
4 TraesCS1B01G252200 chr1D 89.524 105 10 1 2967 3071 329793754 329793651 1.250000e-26 132
5 TraesCS1B01G252200 chr1D 94.444 72 4 0 719 790 329795973 329795902 1.630000e-20 111
6 TraesCS1B01G252200 chr1A 94.226 3793 184 20 858 4630 427041253 427037476 0.000000e+00 5758
7 TraesCS1B01G252200 chr1A 88.106 681 40 16 156 798 427042913 427042236 0.000000e+00 771
8 TraesCS1B01G252200 chr1A 83.938 386 37 11 4802 5170 427035840 427035463 4.110000e-91 346
9 TraesCS1B01G252200 chr1A 94.891 137 7 0 5171 5307 427034022 427033886 1.210000e-51 215
10 TraesCS1B01G252200 chr1A 91.429 105 8 1 2872 2975 427039146 427039042 5.790000e-30 143
11 TraesCS1B01G252200 chr1A 90.476 105 9 1 2967 3071 427039241 427039138 2.690000e-28 137
12 TraesCS1B01G252200 chr5D 73.462 1349 298 48 1046 2361 478742343 478741022 2.360000e-123 453
13 TraesCS1B01G252200 chr5D 90.099 101 8 2 5298 5397 14082132 14082231 4.510000e-26 130
14 TraesCS1B01G252200 chr3B 96.694 242 7 1 5307 5547 799710542 799710783 8.660000e-108 401
15 TraesCS1B01G252200 chr3B 96.622 148 5 0 1 148 784946663 784946810 4.290000e-61 246
16 TraesCS1B01G252200 chr3B 84.163 221 29 4 5304 5520 757959505 757959723 5.630000e-50 209
17 TraesCS1B01G252200 chr2B 95.484 155 6 1 2 156 77858958 77859111 4.290000e-61 246
18 TraesCS1B01G252200 chr2B 95.918 147 6 0 2 148 77814918 77815064 7.180000e-59 239
19 TraesCS1B01G252200 chr2B 94.737 152 7 1 1 152 41884061 41884211 9.290000e-58 235
20 TraesCS1B01G252200 chrUn 95.364 151 5 2 2 152 272848793 272848941 7.180000e-59 239
21 TraesCS1B01G252200 chrUn 95.364 151 5 2 2 152 359687373 359687521 7.180000e-59 239
22 TraesCS1B01G252200 chrUn 94.702 151 6 2 2 152 245558660 245558808 3.340000e-57 233
23 TraesCS1B01G252200 chrUn 94.702 151 6 2 2 152 400141632 400141780 3.340000e-57 233
24 TraesCS1B01G252200 chr7B 94.194 155 8 1 1 154 610354782 610354628 9.290000e-58 235
25 TraesCS1B01G252200 chr7B 84.332 217 24 4 5308 5520 1815987 1816197 2.620000e-48 204
26 TraesCS1B01G252200 chr7B 88.710 124 11 3 5307 5430 744737054 744736934 1.250000e-31 148
27 TraesCS1B01G252200 chr7D 82.160 213 30 6 5308 5520 1068355 1068559 5.710000e-40 176
28 TraesCS1B01G252200 chr7D 89.899 99 10 0 5301 5399 538149684 538149586 1.620000e-25 128
29 TraesCS1B01G252200 chr6D 87.156 109 10 2 5292 5396 422595986 422596094 2.710000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G252200 chr1B 444860831 444866377 5546 True 10244.000000 10244 100.00000 1 5547 1 chr1B.!!$R1 5546
1 TraesCS1B01G252200 chr1D 329791123 329795973 4850 True 1863.750000 7016 93.12825 719 5307 4 chr1D.!!$R1 4588
2 TraesCS1B01G252200 chr1A 427033886 427042913 9027 True 1228.333333 5758 90.51100 156 5307 6 chr1A.!!$R1 5151
3 TraesCS1B01G252200 chr5D 478741022 478742343 1321 True 453.000000 453 73.46200 1046 2361 1 chr5D.!!$R1 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.036732 TCAAGCTGGGCGTTCATTCT 59.963 50.0 0.00 0.00 0.00 2.40 F
34 35 0.169672 CAAGCTGGGCGTTCATTCTG 59.830 55.0 0.00 0.00 0.00 3.02 F
39 40 0.178975 TGGGCGTTCATTCTGGGTTT 60.179 50.0 0.00 0.00 0.00 3.27 F
624 655 0.179059 GGGCGGGCCAATATTTTTGG 60.179 55.0 16.76 1.83 42.37 3.28 F
2259 3252 0.040067 CAAGGCAGCTTGGTTTCGAC 60.040 55.0 0.00 0.00 0.00 4.20 F
2478 3471 0.250989 TCCCTGTTTTGGTTAGCCCG 60.251 55.0 0.00 0.00 35.15 6.13 F
2816 3809 0.478072 TCAGAACATGGGGCAACTGT 59.522 50.0 0.00 0.00 0.00 3.55 F
2818 3811 0.540365 AGAACATGGGGCAACTGTGG 60.540 55.0 0.00 0.00 0.00 4.17 F
2832 3825 0.957395 CTGTGGGTCATGTGCACCTC 60.957 60.0 15.69 0.00 33.96 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1207 2188 0.905357 CCCTTGAACTCGACCTGGAT 59.095 55.000 0.00 0.00 0.00 3.41 R
1908 2901 1.603739 GAACCTGGCCAAGACCCAC 60.604 63.158 8.77 0.00 0.00 4.61 R
1968 2961 2.031012 CAAGGCTGGTGACGAGCA 59.969 61.111 20.81 0.00 36.57 4.26 R
2473 3466 0.112412 ATGTTTTTGTCCCTCGGGCT 59.888 50.000 0.00 0.00 34.68 5.19 R
3848 4846 0.379669 GAGATGCCGACCAATGCTTG 59.620 55.000 0.00 0.00 0.00 4.01 R
3864 4862 2.268920 GCCGCACCCATCAAGAGA 59.731 61.111 0.00 0.00 0.00 3.10 R
3948 4947 4.281182 AGGATGCGAGTATATTCGGTTCTT 59.719 41.667 17.91 1.76 40.79 2.52 R
4491 5498 4.977963 CACAAATCATAATAAAGGCAGCGG 59.022 41.667 0.00 0.00 0.00 5.52 R
4696 5780 6.103330 TCTTACGCATGCTGTTGTTATAGAA 58.897 36.000 17.13 3.64 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.828868 AGCCCACGAGCTTGTCAA 59.171 55.556 2.72 0.00 41.41 3.18
18 19 1.302033 AGCCCACGAGCTTGTCAAG 60.302 57.895 2.72 8.31 41.41 3.02
27 28 3.749981 CTTGTCAAGCTGGGCGTT 58.250 55.556 0.00 0.00 0.00 4.84
28 29 1.576421 CTTGTCAAGCTGGGCGTTC 59.424 57.895 0.00 0.00 0.00 3.95
29 30 1.153066 TTGTCAAGCTGGGCGTTCA 60.153 52.632 0.00 0.00 0.00 3.18
30 31 0.537143 TTGTCAAGCTGGGCGTTCAT 60.537 50.000 0.00 0.00 0.00 2.57
31 32 0.537143 TGTCAAGCTGGGCGTTCATT 60.537 50.000 0.00 0.00 0.00 2.57
32 33 0.169009 GTCAAGCTGGGCGTTCATTC 59.831 55.000 0.00 0.00 0.00 2.67
33 34 0.036732 TCAAGCTGGGCGTTCATTCT 59.963 50.000 0.00 0.00 0.00 2.40
34 35 0.169672 CAAGCTGGGCGTTCATTCTG 59.830 55.000 0.00 0.00 0.00 3.02
35 36 0.962356 AAGCTGGGCGTTCATTCTGG 60.962 55.000 0.00 0.00 0.00 3.86
36 37 2.409870 GCTGGGCGTTCATTCTGGG 61.410 63.158 0.00 0.00 0.00 4.45
37 38 1.002134 CTGGGCGTTCATTCTGGGT 60.002 57.895 0.00 0.00 0.00 4.51
38 39 0.609131 CTGGGCGTTCATTCTGGGTT 60.609 55.000 0.00 0.00 0.00 4.11
39 40 0.178975 TGGGCGTTCATTCTGGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
40 41 0.243636 GGGCGTTCATTCTGGGTTTG 59.756 55.000 0.00 0.00 0.00 2.93
41 42 1.243902 GGCGTTCATTCTGGGTTTGA 58.756 50.000 0.00 0.00 0.00 2.69
42 43 1.818674 GGCGTTCATTCTGGGTTTGAT 59.181 47.619 0.00 0.00 0.00 2.57
43 44 2.415893 GGCGTTCATTCTGGGTTTGATG 60.416 50.000 0.00 0.00 0.00 3.07
44 45 2.487762 GCGTTCATTCTGGGTTTGATGA 59.512 45.455 0.00 0.00 0.00 2.92
45 46 3.670627 GCGTTCATTCTGGGTTTGATGAC 60.671 47.826 0.00 0.00 0.00 3.06
46 47 3.753272 CGTTCATTCTGGGTTTGATGACT 59.247 43.478 0.00 0.00 0.00 3.41
47 48 4.142816 CGTTCATTCTGGGTTTGATGACTC 60.143 45.833 0.00 0.00 0.00 3.36
48 49 3.955471 TCATTCTGGGTTTGATGACTCC 58.045 45.455 0.00 0.00 0.00 3.85
49 50 3.588842 TCATTCTGGGTTTGATGACTCCT 59.411 43.478 0.00 0.00 0.00 3.69
50 51 4.043310 TCATTCTGGGTTTGATGACTCCTT 59.957 41.667 0.00 0.00 0.00 3.36
51 52 3.703001 TCTGGGTTTGATGACTCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
52 53 3.251484 TCTGGGTTTGATGACTCCTTCT 58.749 45.455 0.00 0.00 0.00 2.85
53 54 3.008375 TCTGGGTTTGATGACTCCTTCTG 59.992 47.826 0.00 0.00 0.00 3.02
54 55 2.040278 TGGGTTTGATGACTCCTTCTGG 59.960 50.000 0.00 0.00 0.00 3.86
55 56 2.619074 GGGTTTGATGACTCCTTCTGGG 60.619 54.545 0.00 0.00 0.00 4.45
56 57 2.305927 GGTTTGATGACTCCTTCTGGGA 59.694 50.000 0.00 0.00 42.77 4.37
63 64 3.205731 TCCTTCTGGGAGGCCTCT 58.794 61.111 31.36 0.00 39.58 3.69
64 65 1.306482 TCCTTCTGGGAGGCCTCTG 60.306 63.158 31.36 20.80 39.58 3.35
65 66 1.614824 CCTTCTGGGAGGCCTCTGT 60.615 63.158 31.36 0.00 37.23 3.41
66 67 1.621672 CCTTCTGGGAGGCCTCTGTC 61.622 65.000 31.36 20.59 37.23 3.51
67 68 1.613630 TTCTGGGAGGCCTCTGTCC 60.614 63.158 31.36 23.82 0.00 4.02
70 71 4.741239 GGGAGGCCTCTGTCCCCA 62.741 72.222 31.36 0.00 46.23 4.96
71 72 2.610859 GGAGGCCTCTGTCCCCAA 60.611 66.667 31.36 0.00 0.00 4.12
72 73 2.003548 GGAGGCCTCTGTCCCCAAT 61.004 63.158 31.36 0.00 0.00 3.16
73 74 1.575447 GGAGGCCTCTGTCCCCAATT 61.575 60.000 31.36 0.00 0.00 2.32
74 75 0.394899 GAGGCCTCTGTCCCCAATTG 60.395 60.000 26.25 0.00 0.00 2.32
75 76 2.054453 GGCCTCTGTCCCCAATTGC 61.054 63.158 0.00 0.00 0.00 3.56
76 77 1.304381 GCCTCTGTCCCCAATTGCA 60.304 57.895 0.00 0.00 0.00 4.08
77 78 0.685458 GCCTCTGTCCCCAATTGCAT 60.685 55.000 0.00 0.00 0.00 3.96
78 79 1.856629 CCTCTGTCCCCAATTGCATT 58.143 50.000 0.00 0.00 0.00 3.56
79 80 1.479323 CCTCTGTCCCCAATTGCATTG 59.521 52.381 0.00 0.00 39.94 2.82
80 81 2.173519 CTCTGTCCCCAATTGCATTGT 58.826 47.619 0.00 0.00 38.59 2.71
81 82 3.355378 CTCTGTCCCCAATTGCATTGTA 58.645 45.455 0.00 0.00 38.59 2.41
82 83 3.763360 CTCTGTCCCCAATTGCATTGTAA 59.237 43.478 0.00 0.00 38.59 2.41
83 84 4.155709 TCTGTCCCCAATTGCATTGTAAA 58.844 39.130 0.00 0.00 38.59 2.01
84 85 4.590647 TCTGTCCCCAATTGCATTGTAAAA 59.409 37.500 0.00 0.00 38.59 1.52
85 86 4.636249 TGTCCCCAATTGCATTGTAAAAC 58.364 39.130 0.00 0.00 38.59 2.43
86 87 4.346418 TGTCCCCAATTGCATTGTAAAACT 59.654 37.500 0.00 0.00 38.59 2.66
87 88 4.690280 GTCCCCAATTGCATTGTAAAACTG 59.310 41.667 0.00 0.00 38.59 3.16
88 89 4.346418 TCCCCAATTGCATTGTAAAACTGT 59.654 37.500 0.00 0.00 38.59 3.55
89 90 5.062528 CCCCAATTGCATTGTAAAACTGTT 58.937 37.500 0.00 0.00 38.59 3.16
90 91 6.042093 TCCCCAATTGCATTGTAAAACTGTTA 59.958 34.615 0.00 0.00 38.59 2.41
91 92 6.368516 CCCCAATTGCATTGTAAAACTGTTAG 59.631 38.462 0.00 0.00 38.59 2.34
92 93 6.128580 CCCAATTGCATTGTAAAACTGTTAGC 60.129 38.462 0.00 0.00 38.59 3.09
93 94 6.128580 CCAATTGCATTGTAAAACTGTTAGCC 60.129 38.462 0.00 0.00 38.59 3.93
94 95 5.521906 TTGCATTGTAAAACTGTTAGCCA 57.478 34.783 0.00 0.00 0.00 4.75
95 96 7.359431 CAATTGCATTGTAAAACTGTTAGCCAG 60.359 37.037 0.00 0.00 39.99 4.85
104 105 2.907910 CTGTTAGCCAGTGACATTGC 57.092 50.000 0.00 0.00 36.37 3.56
105 106 2.430465 CTGTTAGCCAGTGACATTGCT 58.570 47.619 0.00 0.00 36.37 3.91
106 107 2.153645 TGTTAGCCAGTGACATTGCTG 58.846 47.619 4.18 0.00 35.34 4.41
107 108 2.154462 GTTAGCCAGTGACATTGCTGT 58.846 47.619 4.18 0.00 38.67 4.40
108 109 1.812235 TAGCCAGTGACATTGCTGTG 58.188 50.000 4.18 0.00 35.14 3.66
109 110 1.080974 GCCAGTGACATTGCTGTGC 60.081 57.895 0.00 0.00 35.14 4.57
110 111 1.521450 GCCAGTGACATTGCTGTGCT 61.521 55.000 0.00 0.00 35.14 4.40
111 112 0.956633 CCAGTGACATTGCTGTGCTT 59.043 50.000 0.00 0.00 35.14 3.91
112 113 1.335597 CCAGTGACATTGCTGTGCTTG 60.336 52.381 0.00 0.00 35.14 4.01
113 114 1.605232 CAGTGACATTGCTGTGCTTGA 59.395 47.619 0.00 0.00 35.14 3.02
114 115 2.033675 CAGTGACATTGCTGTGCTTGAA 59.966 45.455 0.00 0.00 35.14 2.69
115 116 2.292569 AGTGACATTGCTGTGCTTGAAG 59.707 45.455 0.00 0.00 35.14 3.02
116 117 2.033801 GTGACATTGCTGTGCTTGAAGT 59.966 45.455 0.00 0.00 35.14 3.01
117 118 2.689471 TGACATTGCTGTGCTTGAAGTT 59.311 40.909 0.00 0.00 35.14 2.66
118 119 3.130869 TGACATTGCTGTGCTTGAAGTTT 59.869 39.130 0.00 0.00 35.14 2.66
119 120 4.337836 TGACATTGCTGTGCTTGAAGTTTA 59.662 37.500 0.00 0.00 35.14 2.01
120 121 5.163571 TGACATTGCTGTGCTTGAAGTTTAA 60.164 36.000 0.00 0.00 35.14 1.52
121 122 5.846203 ACATTGCTGTGCTTGAAGTTTAAT 58.154 33.333 0.00 0.00 33.22 1.40
122 123 5.693104 ACATTGCTGTGCTTGAAGTTTAATG 59.307 36.000 0.00 0.00 33.22 1.90
123 124 4.241590 TGCTGTGCTTGAAGTTTAATGG 57.758 40.909 0.00 0.00 0.00 3.16
124 125 3.888323 TGCTGTGCTTGAAGTTTAATGGA 59.112 39.130 0.00 0.00 0.00 3.41
125 126 4.340666 TGCTGTGCTTGAAGTTTAATGGAA 59.659 37.500 0.00 0.00 0.00 3.53
126 127 5.010922 TGCTGTGCTTGAAGTTTAATGGAAT 59.989 36.000 0.00 0.00 0.00 3.01
127 128 5.928264 GCTGTGCTTGAAGTTTAATGGAATT 59.072 36.000 0.00 0.00 41.28 2.17
128 129 6.424812 GCTGTGCTTGAAGTTTAATGGAATTT 59.575 34.615 0.00 0.00 37.87 1.82
129 130 7.359514 GCTGTGCTTGAAGTTTAATGGAATTTC 60.360 37.037 0.00 0.00 37.87 2.17
130 131 6.928492 TGTGCTTGAAGTTTAATGGAATTTCC 59.072 34.615 8.59 8.59 37.87 3.13
140 141 2.595750 TGGAATTTCCATGTTCCCGT 57.404 45.000 14.24 0.00 42.67 5.28
141 142 2.442413 TGGAATTTCCATGTTCCCGTC 58.558 47.619 14.24 0.00 42.67 4.79
142 143 2.224892 TGGAATTTCCATGTTCCCGTCA 60.225 45.455 14.24 0.00 42.67 4.35
143 144 2.823154 GGAATTTCCATGTTCCCGTCAA 59.177 45.455 10.67 0.00 38.33 3.18
144 145 3.257127 GGAATTTCCATGTTCCCGTCAAA 59.743 43.478 10.67 0.00 38.33 2.69
145 146 4.262249 GGAATTTCCATGTTCCCGTCAAAA 60.262 41.667 10.67 0.00 38.33 2.44
146 147 4.946478 ATTTCCATGTTCCCGTCAAAAA 57.054 36.364 0.00 0.00 0.00 1.94
198 199 0.458260 TAGCCGCATGTACGTGATGT 59.542 50.000 19.38 2.48 0.00 3.06
222 223 1.076332 GCTTTCCGCATAGAACACGT 58.924 50.000 0.00 0.00 38.92 4.49
226 227 0.455464 TCCGCATAGAACACGTGACG 60.455 55.000 25.01 2.24 0.00 4.35
279 282 4.574674 AGTGTTATTCTCAGCCCATCAA 57.425 40.909 0.00 0.00 0.00 2.57
306 309 5.956642 TCAAATCCTAAATTTAACACCGCC 58.043 37.500 0.00 0.00 0.00 6.13
322 325 3.376859 CACCGCCACTAGCATATTTTTGA 59.623 43.478 0.00 0.00 44.04 2.69
336 339 9.019764 AGCATATTTTTGAATTTATTTCCGACG 57.980 29.630 0.00 0.00 33.04 5.12
337 340 9.015577 GCATATTTTTGAATTTATTTCCGACGA 57.984 29.630 0.00 0.00 33.04 4.20
340 343 8.980143 ATTTTTGAATTTATTTCCGACGATGT 57.020 26.923 0.00 0.00 33.04 3.06
341 344 8.804688 TTTTTGAATTTATTTCCGACGATGTT 57.195 26.923 0.00 0.00 33.04 2.71
342 345 7.789341 TTTGAATTTATTTCCGACGATGTTG 57.211 32.000 0.00 0.00 33.04 3.33
343 346 5.874831 TGAATTTATTTCCGACGATGTTGG 58.125 37.500 0.00 0.00 38.40 3.77
366 369 5.467705 GTTACGTGGTAAGAGACTCAATGT 58.532 41.667 5.02 0.00 0.00 2.71
382 385 6.546395 ACTCAATGTTAAGATGATTTGACGC 58.454 36.000 0.00 0.00 0.00 5.19
383 386 6.372659 ACTCAATGTTAAGATGATTTGACGCT 59.627 34.615 0.00 0.00 0.00 5.07
385 388 8.262715 TCAATGTTAAGATGATTTGACGCTTA 57.737 30.769 0.00 0.00 0.00 3.09
386 389 8.390354 TCAATGTTAAGATGATTTGACGCTTAG 58.610 33.333 0.00 0.00 0.00 2.18
387 390 7.849804 ATGTTAAGATGATTTGACGCTTAGT 57.150 32.000 0.00 0.00 0.00 2.24
404 409 7.474190 ACGCTTAGTCTTTTAGAGATACTCAC 58.526 38.462 0.00 0.00 36.61 3.51
458 484 2.468040 CGTTCCTCGTGCGAGATTAATC 59.532 50.000 21.41 7.41 44.53 1.75
474 500 0.250901 AATCGGCTGCACTGGAAACT 60.251 50.000 0.50 0.00 0.00 2.66
475 501 0.957395 ATCGGCTGCACTGGAAACTG 60.957 55.000 0.50 0.00 0.00 3.16
553 579 4.802876 CCAAATTATCTGGCGAGAGTTC 57.197 45.455 4.31 0.00 0.00 3.01
569 600 2.592993 TTCTCCAGCCCCCGTGAAG 61.593 63.158 0.00 0.00 0.00 3.02
573 604 1.987855 CCAGCCCCCGTGAAGTAGA 60.988 63.158 0.00 0.00 0.00 2.59
574 605 1.218316 CAGCCCCCGTGAAGTAGAC 59.782 63.158 0.00 0.00 0.00 2.59
578 609 0.818296 CCCCCGTGAAGTAGACAGAG 59.182 60.000 0.00 0.00 0.00 3.35
622 653 1.065782 GTTGGGCGGGCCAATATTTTT 60.066 47.619 34.54 0.00 37.98 1.94
624 655 0.179059 GGGCGGGCCAATATTTTTGG 60.179 55.000 16.76 1.83 42.37 3.28
625 656 0.539518 GGCGGGCCAATATTTTTGGT 59.460 50.000 4.39 0.00 41.53 3.67
626 657 1.650825 GCGGGCCAATATTTTTGGTG 58.349 50.000 4.39 0.82 41.53 4.17
627 658 1.205893 GCGGGCCAATATTTTTGGTGA 59.794 47.619 4.39 0.00 41.53 4.02
628 659 2.158971 GCGGGCCAATATTTTTGGTGAT 60.159 45.455 4.39 0.00 41.53 3.06
629 660 3.456280 CGGGCCAATATTTTTGGTGATG 58.544 45.455 4.39 0.00 41.53 3.07
630 661 3.131933 CGGGCCAATATTTTTGGTGATGA 59.868 43.478 4.39 0.00 41.53 2.92
654 688 2.953669 GCGATGCAGCCAAATCTTG 58.046 52.632 0.00 0.00 0.00 3.02
655 689 1.143969 GCGATGCAGCCAAATCTTGC 61.144 55.000 0.00 0.00 0.00 4.01
656 690 0.454600 CGATGCAGCCAAATCTTGCT 59.545 50.000 0.00 0.00 38.67 3.91
800 841 3.338250 CCAGCAAGCCCCAGGGTA 61.338 66.667 4.22 0.00 37.65 3.69
802 843 2.531685 AGCAAGCCCCAGGGTACA 60.532 61.111 4.22 0.00 37.65 2.90
803 844 2.160171 AGCAAGCCCCAGGGTACAA 61.160 57.895 4.22 0.00 37.65 2.41
804 845 1.228737 GCAAGCCCCAGGGTACAAA 60.229 57.895 4.22 0.00 37.65 2.83
806 847 1.185315 CAAGCCCCAGGGTACAAATG 58.815 55.000 4.22 0.00 37.65 2.32
818 890 5.887598 CAGGGTACAAATGATGATTCCTCAA 59.112 40.000 0.00 0.00 34.37 3.02
819 891 6.377996 CAGGGTACAAATGATGATTCCTCAAA 59.622 38.462 0.00 0.00 34.37 2.69
970 1947 2.510948 CGATATGAGTGCGCACCTC 58.489 57.895 35.51 28.83 0.00 3.85
1085 2063 1.000359 TCCCAGTCATCTCCAGCGA 60.000 57.895 0.00 0.00 0.00 4.93
1173 2151 4.179599 CCCCCTCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1255 2236 0.976641 AGCTCCAAATCTGTGGACGA 59.023 50.000 0.00 0.00 42.97 4.20
1269 2250 3.485346 GACGAGGTGGGTGGCCAAA 62.485 63.158 7.24 0.00 0.00 3.28
1368 2349 3.181967 GACGAGCGCACGATGCTT 61.182 61.111 33.02 10.82 44.18 3.91
1908 2901 2.113433 GCTGCACATCCTCCAGCTG 61.113 63.158 6.78 6.78 46.28 4.24
1968 2961 2.203596 ACCACTCTCGACCCCGTT 60.204 61.111 0.00 0.00 37.05 4.44
2097 3090 1.260544 ATGGAAGCTTCACCTTTGCC 58.739 50.000 27.02 9.08 0.00 4.52
2253 3246 1.757731 TGTTGCAAGGCAGCTTGGT 60.758 52.632 0.00 0.00 40.35 3.67
2259 3252 0.040067 CAAGGCAGCTTGGTTTCGAC 60.040 55.000 0.00 0.00 0.00 4.20
2366 3359 3.861131 GCCTTCATCGTTCCGCAGTATAT 60.861 47.826 0.00 0.00 0.00 0.86
2368 3361 4.546570 CTTCATCGTTCCGCAGTATATGA 58.453 43.478 0.00 0.00 0.00 2.15
2478 3471 0.250989 TCCCTGTTTTGGTTAGCCCG 60.251 55.000 0.00 0.00 35.15 6.13
2740 3733 3.679389 AGATGTGTAAGAAAGGGCACAG 58.321 45.455 0.00 0.00 43.72 3.66
2808 3801 2.634815 ATAGCAGCTCAGAACATGGG 57.365 50.000 0.00 0.00 0.00 4.00
2810 3803 2.413142 GCAGCTCAGAACATGGGGC 61.413 63.158 0.00 0.00 0.00 5.80
2812 3805 0.609957 CAGCTCAGAACATGGGGCAA 60.610 55.000 0.00 0.00 32.87 4.52
2813 3806 0.610232 AGCTCAGAACATGGGGCAAC 60.610 55.000 0.00 0.00 32.87 4.17
2814 3807 0.610232 GCTCAGAACATGGGGCAACT 60.610 55.000 0.00 0.00 0.00 3.16
2816 3809 0.478072 TCAGAACATGGGGCAACTGT 59.522 50.000 0.00 0.00 0.00 3.55
2817 3810 0.599558 CAGAACATGGGGCAACTGTG 59.400 55.000 0.00 0.00 0.00 3.66
2818 3811 0.540365 AGAACATGGGGCAACTGTGG 60.540 55.000 0.00 0.00 0.00 4.17
2819 3812 1.533753 AACATGGGGCAACTGTGGG 60.534 57.895 0.00 0.00 0.00 4.61
2820 3813 2.118076 CATGGGGCAACTGTGGGT 59.882 61.111 0.00 0.00 0.00 4.51
2822 3815 2.468868 ATGGGGCAACTGTGGGTCA 61.469 57.895 0.00 0.00 0.00 4.02
2824 3817 1.978617 GGGGCAACTGTGGGTCATG 60.979 63.158 0.00 0.00 0.00 3.07
2825 3818 1.228552 GGGCAACTGTGGGTCATGT 60.229 57.895 0.00 0.00 0.00 3.21
2826 3819 1.526575 GGGCAACTGTGGGTCATGTG 61.527 60.000 0.00 0.00 0.00 3.21
2832 3825 0.957395 CTGTGGGTCATGTGCACCTC 60.957 60.000 15.69 0.00 33.96 3.85
2833 3826 1.376466 GTGGGTCATGTGCACCTCT 59.624 57.895 15.69 0.00 33.96 3.69
2866 3859 5.406649 CAGTAAGCACAACCAACAGAAAAA 58.593 37.500 0.00 0.00 0.00 1.94
2949 3942 5.635280 TGATGAAGAGTTTGACGAATCAGTC 59.365 40.000 0.00 0.00 41.30 3.51
2988 3981 2.504367 GGTGCAACTGTAGGTCATGTT 58.496 47.619 0.00 0.00 36.74 2.71
3036 4029 6.470278 TGTGATCAGTGATGAAGAGTTTGAT 58.530 36.000 11.20 0.00 0.00 2.57
3158 4151 4.217118 CCTTATGGAAGATTGCATAGTGGC 59.783 45.833 6.84 0.00 41.47 5.01
3273 4266 2.357323 GCTAATGCAGCCTTCCTTTCTC 59.643 50.000 0.00 0.00 45.23 2.87
3281 4274 4.335037 GCAGCCTTCCTTTCTCTTATCTTG 59.665 45.833 0.00 0.00 0.00 3.02
3352 4346 4.645535 CAAATCCTGAACTGGTCAAGAGA 58.354 43.478 0.06 0.00 35.22 3.10
3354 4348 2.964209 TCCTGAACTGGTCAAGAGAGT 58.036 47.619 0.00 0.00 35.22 3.24
3355 4349 4.114015 TCCTGAACTGGTCAAGAGAGTA 57.886 45.455 0.00 0.00 35.22 2.59
3356 4350 4.480115 TCCTGAACTGGTCAAGAGAGTAA 58.520 43.478 0.00 0.00 35.22 2.24
3452 4446 2.223829 ACGAATACGGATCAAGGAGCTG 60.224 50.000 0.00 0.00 44.46 4.24
3478 4472 1.474320 CCAAGACGTGAAGTTGGGACA 60.474 52.381 0.00 0.00 37.64 4.02
3493 4487 4.125124 TGGGACAAGGGAAATGATTGAA 57.875 40.909 0.00 0.00 31.92 2.69
3550 4544 7.159437 TGTGTTGCAAAAAGTAATTGATTCG 57.841 32.000 0.00 0.00 0.00 3.34
3809 4807 1.604593 GCTCCAAGGCTGGCAAAGA 60.605 57.895 3.38 0.00 43.17 2.52
3948 4947 4.265904 ACGATTCATGTGGTTGTGTCTA 57.734 40.909 0.00 0.00 0.00 2.59
4094 5094 6.264744 AGCGAAATTAGCAGTAGTGGTAGATA 59.735 38.462 9.31 0.00 37.92 1.98
4095 5095 6.583050 GCGAAATTAGCAGTAGTGGTAGATAG 59.417 42.308 9.31 4.05 37.92 2.08
4227 5227 5.817988 TGAAACTGTCGACGGATATAAGAG 58.182 41.667 30.55 11.53 0.00 2.85
4436 5443 4.187694 CTCTCTTGTAAAGCTGGGATCAC 58.812 47.826 0.00 0.00 45.70 3.06
4480 5487 7.884257 TCTTGAACTGATTGCACAAATTGATA 58.116 30.769 0.00 0.00 0.00 2.15
4491 5498 4.601019 CACAAATTGATAATGCTCGTCCC 58.399 43.478 0.00 0.00 0.00 4.46
4696 5780 9.807649 TTAGTTAGAAGTAGTCGAAAGTTGTTT 57.192 29.630 0.00 0.00 0.00 2.83
4745 5829 9.178758 GAAGGGTTCTTAATCTTGATGTAACAT 57.821 33.333 0.00 0.00 32.52 2.71
4948 7447 4.152402 GTCCACTATGATGTTGTGACACAC 59.848 45.833 8.05 4.59 38.91 3.82
4955 7454 4.006319 TGATGTTGTGACACACTGAACAA 58.994 39.130 8.05 0.00 38.91 2.83
4985 7484 7.619050 AGTGTAAGCTATATGGATGAAGATGG 58.381 38.462 0.00 0.00 0.00 3.51
5017 7516 7.100458 AGCACCATTTTTGGATTAGATACAC 57.900 36.000 0.00 0.00 0.00 2.90
5105 7605 6.093633 CCAACTAGTACTATTTTTCAGGCACC 59.906 42.308 2.33 0.00 0.00 5.01
5112 7612 5.736813 ACTATTTTTCAGGCACCGTATACA 58.263 37.500 3.32 0.00 0.00 2.29
5119 7620 3.131396 CAGGCACCGTATACATTCTTCC 58.869 50.000 3.32 0.00 0.00 3.46
5127 7628 5.836898 ACCGTATACATTCTTCCTCCACATA 59.163 40.000 3.32 0.00 0.00 2.29
5180 9122 2.744202 GGTTGAGTAGACTGCATTGTGG 59.256 50.000 0.00 0.00 0.00 4.17
5349 9291 3.630312 CCCCCTAAACACATTAATGGACG 59.370 47.826 19.37 9.79 0.00 4.79
5350 9292 4.519213 CCCCTAAACACATTAATGGACGA 58.481 43.478 19.37 0.56 0.00 4.20
5351 9293 4.574828 CCCCTAAACACATTAATGGACGAG 59.425 45.833 19.37 9.35 0.00 4.18
5352 9294 5.424757 CCCTAAACACATTAATGGACGAGA 58.575 41.667 19.37 0.07 0.00 4.04
5353 9295 6.055588 CCCTAAACACATTAATGGACGAGAT 58.944 40.000 19.37 2.27 0.00 2.75
5354 9296 6.202954 CCCTAAACACATTAATGGACGAGATC 59.797 42.308 19.37 0.00 0.00 2.75
5355 9297 6.986817 CCTAAACACATTAATGGACGAGATCT 59.013 38.462 19.37 0.00 0.00 2.75
5356 9298 6.910536 AAACACATTAATGGACGAGATCTC 57.089 37.500 19.37 13.05 0.00 2.75
5357 9299 5.860941 ACACATTAATGGACGAGATCTCT 57.139 39.130 20.26 7.69 0.00 3.10
5358 9300 5.837437 ACACATTAATGGACGAGATCTCTC 58.163 41.667 20.26 15.30 39.55 3.20
5359 9301 5.221342 ACACATTAATGGACGAGATCTCTCC 60.221 44.000 23.73 23.73 39.79 3.71
5360 9302 4.895889 ACATTAATGGACGAGATCTCTCCA 59.104 41.667 29.97 29.97 39.79 3.86
5361 9303 5.541868 ACATTAATGGACGAGATCTCTCCAT 59.458 40.000 30.98 30.98 43.19 3.41
5362 9304 6.721668 ACATTAATGGACGAGATCTCTCCATA 59.278 38.462 33.63 26.25 41.90 2.74
5363 9305 6.576662 TTAATGGACGAGATCTCTCCATAC 57.423 41.667 33.63 17.18 41.90 2.39
5364 9306 2.865079 TGGACGAGATCTCTCCATACC 58.135 52.381 26.88 17.91 39.79 2.73
5365 9307 2.164338 GGACGAGATCTCTCCATACCC 58.836 57.143 24.76 11.95 39.79 3.69
5366 9308 2.164338 GACGAGATCTCTCCATACCCC 58.836 57.143 20.26 0.00 39.79 4.95
5367 9309 1.783979 ACGAGATCTCTCCATACCCCT 59.216 52.381 20.26 0.00 39.79 4.79
5368 9310 2.178106 ACGAGATCTCTCCATACCCCTT 59.822 50.000 20.26 0.00 39.79 3.95
5369 9311 2.823154 CGAGATCTCTCCATACCCCTTC 59.177 54.545 20.26 0.00 39.79 3.46
5370 9312 3.752218 CGAGATCTCTCCATACCCCTTCA 60.752 52.174 20.26 0.00 39.79 3.02
5371 9313 4.424842 GAGATCTCTCCATACCCCTTCAT 58.575 47.826 15.80 0.00 37.02 2.57
5372 9314 5.584913 GAGATCTCTCCATACCCCTTCATA 58.415 45.833 15.80 0.00 37.02 2.15
5373 9315 5.982391 AGATCTCTCCATACCCCTTCATAA 58.018 41.667 0.00 0.00 0.00 1.90
5374 9316 6.579214 AGATCTCTCCATACCCCTTCATAAT 58.421 40.000 0.00 0.00 0.00 1.28
5375 9317 7.723382 AGATCTCTCCATACCCCTTCATAATA 58.277 38.462 0.00 0.00 0.00 0.98
5376 9318 8.186985 AGATCTCTCCATACCCCTTCATAATAA 58.813 37.037 0.00 0.00 0.00 1.40
5377 9319 8.757307 ATCTCTCCATACCCCTTCATAATAAA 57.243 34.615 0.00 0.00 0.00 1.40
5378 9320 8.207350 TCTCTCCATACCCCTTCATAATAAAG 57.793 38.462 0.00 0.00 0.00 1.85
5379 9321 7.237679 TCTCTCCATACCCCTTCATAATAAAGG 59.762 40.741 0.00 0.00 42.52 3.11
5389 9331 7.091533 CCTTCATAATAAAGGGTAGGATGGT 57.908 40.000 0.00 0.00 39.75 3.55
5390 9332 7.168905 CCTTCATAATAAAGGGTAGGATGGTC 58.831 42.308 0.00 0.00 39.75 4.02
5391 9333 7.017651 CCTTCATAATAAAGGGTAGGATGGTCT 59.982 40.741 0.00 0.00 39.75 3.85
5392 9334 7.947782 TCATAATAAAGGGTAGGATGGTCTT 57.052 36.000 0.00 0.00 0.00 3.01
5393 9335 8.344939 TCATAATAAAGGGTAGGATGGTCTTT 57.655 34.615 0.00 0.00 0.00 2.52
5394 9336 8.217799 TCATAATAAAGGGTAGGATGGTCTTTG 58.782 37.037 0.00 0.00 0.00 2.77
5395 9337 6.402981 AATAAAGGGTAGGATGGTCTTTGT 57.597 37.500 0.00 0.00 0.00 2.83
5396 9338 7.519347 AATAAAGGGTAGGATGGTCTTTGTA 57.481 36.000 0.00 0.00 0.00 2.41
5397 9339 4.838904 AAGGGTAGGATGGTCTTTGTAC 57.161 45.455 0.00 0.00 0.00 2.90
5398 9340 3.798515 AGGGTAGGATGGTCTTTGTACA 58.201 45.455 0.00 0.00 0.00 2.90
5399 9341 3.518303 AGGGTAGGATGGTCTTTGTACAC 59.482 47.826 0.00 0.00 0.00 2.90
5400 9342 3.370209 GGGTAGGATGGTCTTTGTACACC 60.370 52.174 0.00 0.00 0.00 4.16
5401 9343 3.370209 GGTAGGATGGTCTTTGTACACCC 60.370 52.174 0.00 0.00 0.00 4.61
5402 9344 2.344592 AGGATGGTCTTTGTACACCCA 58.655 47.619 0.00 0.00 0.00 4.51
5403 9345 2.039879 AGGATGGTCTTTGTACACCCAC 59.960 50.000 0.00 0.00 0.00 4.61
5404 9346 2.073816 GATGGTCTTTGTACACCCACG 58.926 52.381 0.00 0.00 0.00 4.94
5405 9347 0.533308 TGGTCTTTGTACACCCACGC 60.533 55.000 0.00 0.00 0.00 5.34
5406 9348 1.232621 GGTCTTTGTACACCCACGCC 61.233 60.000 0.00 0.00 0.00 5.68
5407 9349 1.301087 TCTTTGTACACCCACGCCG 60.301 57.895 0.00 0.00 0.00 6.46
5408 9350 1.301087 CTTTGTACACCCACGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
5409 9351 0.672401 CTTTGTACACCCACGCCGAT 60.672 55.000 0.00 0.00 0.00 4.18
5410 9352 0.607112 TTTGTACACCCACGCCGATA 59.393 50.000 0.00 0.00 0.00 2.92
5411 9353 0.108709 TTGTACACCCACGCCGATAC 60.109 55.000 0.00 0.00 0.00 2.24
5412 9354 1.249469 TGTACACCCACGCCGATACA 61.249 55.000 0.00 0.00 0.00 2.29
5413 9355 0.103572 GTACACCCACGCCGATACAT 59.896 55.000 0.00 0.00 0.00 2.29
5414 9356 1.337703 GTACACCCACGCCGATACATA 59.662 52.381 0.00 0.00 0.00 2.29
5415 9357 0.825410 ACACCCACGCCGATACATAA 59.175 50.000 0.00 0.00 0.00 1.90
5416 9358 1.414919 ACACCCACGCCGATACATAAT 59.585 47.619 0.00 0.00 0.00 1.28
5417 9359 2.066262 CACCCACGCCGATACATAATC 58.934 52.381 0.00 0.00 0.00 1.75
5418 9360 1.968493 ACCCACGCCGATACATAATCT 59.032 47.619 0.00 0.00 31.87 2.40
5419 9361 2.288825 ACCCACGCCGATACATAATCTG 60.289 50.000 0.00 0.00 31.87 2.90
5420 9362 1.726791 CCACGCCGATACATAATCTGC 59.273 52.381 0.00 0.00 40.40 4.26
5423 9365 2.080286 GCCGATACATAATCTGCGGT 57.920 50.000 0.00 0.00 40.74 5.68
5424 9366 2.413837 GCCGATACATAATCTGCGGTT 58.586 47.619 0.00 0.00 40.74 4.44
5425 9367 2.806244 GCCGATACATAATCTGCGGTTT 59.194 45.455 0.00 0.00 40.74 3.27
5426 9368 3.250040 GCCGATACATAATCTGCGGTTTT 59.750 43.478 0.00 0.00 40.74 2.43
5427 9369 4.261031 GCCGATACATAATCTGCGGTTTTT 60.261 41.667 0.00 0.00 40.74 1.94
5455 9397 7.759489 TTTTTGAGAATTATACACAGCCTGT 57.241 32.000 0.00 0.00 36.82 4.00
5466 9408 3.334583 CACAGCCTGTGTATGTACCTT 57.665 47.619 16.78 0.00 43.08 3.50
5467 9409 4.465632 CACAGCCTGTGTATGTACCTTA 57.534 45.455 16.78 0.00 43.08 2.69
5468 9410 4.181578 CACAGCCTGTGTATGTACCTTAC 58.818 47.826 16.78 0.00 43.08 2.34
5469 9411 3.835978 ACAGCCTGTGTATGTACCTTACA 59.164 43.478 0.00 2.53 37.75 2.41
5470 9412 4.181578 CAGCCTGTGTATGTACCTTACAC 58.818 47.826 20.93 20.93 46.18 2.90
5475 9417 3.528532 GTGTATGTACCTTACACAGCCC 58.471 50.000 22.02 4.20 45.59 5.19
5476 9418 2.166870 TGTATGTACCTTACACAGCCCG 59.833 50.000 2.53 0.00 42.23 6.13
5477 9419 0.539986 ATGTACCTTACACAGCCCGG 59.460 55.000 0.00 0.00 42.23 5.73
5478 9420 1.449070 GTACCTTACACAGCCCGGC 60.449 63.158 0.00 0.00 0.00 6.13
5479 9421 3.009192 TACCTTACACAGCCCGGCG 62.009 63.158 3.05 0.00 0.00 6.46
5480 9422 4.388499 CCTTACACAGCCCGGCGT 62.388 66.667 6.01 2.22 0.00 5.68
5481 9423 2.574929 CTTACACAGCCCGGCGTA 59.425 61.111 6.01 0.00 0.00 4.42
5482 9424 1.808390 CTTACACAGCCCGGCGTAC 60.808 63.158 6.01 0.00 0.00 3.67
5483 9425 2.495366 CTTACACAGCCCGGCGTACA 62.495 60.000 6.01 0.00 0.00 2.90
5484 9426 1.890625 TTACACAGCCCGGCGTACAT 61.891 55.000 6.01 0.00 0.00 2.29
5485 9427 2.566057 TACACAGCCCGGCGTACATG 62.566 60.000 6.01 0.00 0.00 3.21
5488 9430 4.402528 AGCCCGGCGTACATGCAA 62.403 61.111 6.01 0.00 36.28 4.08
5489 9431 3.876198 GCCCGGCGTACATGCAAG 61.876 66.667 6.01 0.00 36.28 4.01
5490 9432 2.435938 CCCGGCGTACATGCAAGT 60.436 61.111 6.01 0.00 36.28 3.16
5491 9433 2.038269 CCCGGCGTACATGCAAGTT 61.038 57.895 6.01 0.00 36.28 2.66
5492 9434 1.423845 CCGGCGTACATGCAAGTTC 59.576 57.895 6.01 0.00 36.28 3.01
5493 9435 1.295357 CCGGCGTACATGCAAGTTCA 61.295 55.000 6.01 0.00 36.28 3.18
5494 9436 0.515127 CGGCGTACATGCAAGTTCAA 59.485 50.000 0.00 0.00 36.28 2.69
5495 9437 1.724654 CGGCGTACATGCAAGTTCAAC 60.725 52.381 0.00 0.00 36.28 3.18
5496 9438 1.535462 GGCGTACATGCAAGTTCAACT 59.465 47.619 0.00 0.00 36.28 3.16
5497 9439 2.574322 GCGTACATGCAAGTTCAACTG 58.426 47.619 0.00 0.00 34.15 3.16
5498 9440 2.665519 GCGTACATGCAAGTTCAACTGG 60.666 50.000 0.00 0.00 34.15 4.00
5499 9441 2.095768 CGTACATGCAAGTTCAACTGGG 60.096 50.000 0.00 0.00 0.00 4.45
5500 9442 0.675633 ACATGCAAGTTCAACTGGGC 59.324 50.000 7.37 7.37 32.12 5.36
5501 9443 0.037975 CATGCAAGTTCAACTGGGCC 60.038 55.000 10.96 0.00 30.90 5.80
5502 9444 1.526575 ATGCAAGTTCAACTGGGCCG 61.527 55.000 10.96 0.00 30.90 6.13
5503 9445 2.919494 GCAAGTTCAACTGGGCCGG 61.919 63.158 11.83 11.83 0.00 6.13
5504 9446 2.597510 AAGTTCAACTGGGCCGGC 60.598 61.111 21.18 21.18 0.00 6.13
5505 9447 4.660938 AGTTCAACTGGGCCGGCC 62.661 66.667 38.57 38.57 0.00 6.13
5518 9460 4.047059 CGGCCCAGCAGCAAACAG 62.047 66.667 0.00 0.00 0.00 3.16
5519 9461 2.914097 GGCCCAGCAGCAAACAGT 60.914 61.111 0.00 0.00 0.00 3.55
5520 9462 1.603455 GGCCCAGCAGCAAACAGTA 60.603 57.895 0.00 0.00 0.00 2.74
5521 9463 1.589716 GGCCCAGCAGCAAACAGTAG 61.590 60.000 0.00 0.00 0.00 2.57
5522 9464 0.606401 GCCCAGCAGCAAACAGTAGA 60.606 55.000 0.00 0.00 0.00 2.59
5523 9465 1.896220 CCCAGCAGCAAACAGTAGAA 58.104 50.000 0.00 0.00 0.00 2.10
5524 9466 2.229792 CCCAGCAGCAAACAGTAGAAA 58.770 47.619 0.00 0.00 0.00 2.52
5525 9467 2.622942 CCCAGCAGCAAACAGTAGAAAA 59.377 45.455 0.00 0.00 0.00 2.29
5526 9468 3.256631 CCCAGCAGCAAACAGTAGAAAAT 59.743 43.478 0.00 0.00 0.00 1.82
5527 9469 4.479619 CCAGCAGCAAACAGTAGAAAATC 58.520 43.478 0.00 0.00 0.00 2.17
5528 9470 4.479619 CAGCAGCAAACAGTAGAAAATCC 58.520 43.478 0.00 0.00 0.00 3.01
5529 9471 4.022935 CAGCAGCAAACAGTAGAAAATCCA 60.023 41.667 0.00 0.00 0.00 3.41
5530 9472 4.584325 AGCAGCAAACAGTAGAAAATCCAA 59.416 37.500 0.00 0.00 0.00 3.53
5531 9473 5.068987 AGCAGCAAACAGTAGAAAATCCAAA 59.931 36.000 0.00 0.00 0.00 3.28
5532 9474 5.752955 GCAGCAAACAGTAGAAAATCCAAAA 59.247 36.000 0.00 0.00 0.00 2.44
5533 9475 6.257630 GCAGCAAACAGTAGAAAATCCAAAAA 59.742 34.615 0.00 0.00 0.00 1.94
5534 9476 7.621102 CAGCAAACAGTAGAAAATCCAAAAAC 58.379 34.615 0.00 0.00 0.00 2.43
5535 9477 7.277539 CAGCAAACAGTAGAAAATCCAAAAACA 59.722 33.333 0.00 0.00 0.00 2.83
5536 9478 7.986889 AGCAAACAGTAGAAAATCCAAAAACAT 59.013 29.630 0.00 0.00 0.00 2.71
5537 9479 8.611757 GCAAACAGTAGAAAATCCAAAAACATT 58.388 29.630 0.00 0.00 0.00 2.71
5538 9480 9.919348 CAAACAGTAGAAAATCCAAAAACATTG 57.081 29.630 0.00 0.00 0.00 2.82
5539 9481 8.661352 AACAGTAGAAAATCCAAAAACATTGG 57.339 30.769 0.71 0.71 40.87 3.16
5546 9488 3.042871 TCCAAAAACATTGGATGCAGC 57.957 42.857 5.83 0.00 43.17 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302033 CTTGACAAGCTCGTGGGCT 60.302 57.895 1.43 0.00 45.30 5.19
1 2 3.257933 CTTGACAAGCTCGTGGGC 58.742 61.111 1.43 0.00 0.00 5.36
10 11 1.165907 TGAACGCCCAGCTTGACAAG 61.166 55.000 11.02 11.02 0.00 3.16
11 12 0.537143 ATGAACGCCCAGCTTGACAA 60.537 50.000 0.00 0.00 0.00 3.18
12 13 0.537143 AATGAACGCCCAGCTTGACA 60.537 50.000 0.00 0.00 0.00 3.58
13 14 0.169009 GAATGAACGCCCAGCTTGAC 59.831 55.000 0.00 0.00 0.00 3.18
14 15 0.036732 AGAATGAACGCCCAGCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
15 16 0.169672 CAGAATGAACGCCCAGCTTG 59.830 55.000 0.00 0.00 39.69 4.01
16 17 0.962356 CCAGAATGAACGCCCAGCTT 60.962 55.000 0.00 0.00 39.69 3.74
17 18 1.377725 CCAGAATGAACGCCCAGCT 60.378 57.895 0.00 0.00 39.69 4.24
18 19 2.409870 CCCAGAATGAACGCCCAGC 61.410 63.158 0.00 0.00 39.69 4.85
19 20 0.609131 AACCCAGAATGAACGCCCAG 60.609 55.000 0.00 0.00 39.69 4.45
20 21 0.178975 AAACCCAGAATGAACGCCCA 60.179 50.000 0.00 0.00 39.69 5.36
21 22 0.243636 CAAACCCAGAATGAACGCCC 59.756 55.000 0.00 0.00 39.69 6.13
22 23 1.243902 TCAAACCCAGAATGAACGCC 58.756 50.000 0.00 0.00 39.69 5.68
23 24 2.487762 TCATCAAACCCAGAATGAACGC 59.512 45.455 0.00 0.00 39.69 4.84
24 25 3.753272 AGTCATCAAACCCAGAATGAACG 59.247 43.478 0.00 0.00 39.69 3.95
25 26 4.156739 GGAGTCATCAAACCCAGAATGAAC 59.843 45.833 0.00 0.00 39.69 3.18
26 27 4.043310 AGGAGTCATCAAACCCAGAATGAA 59.957 41.667 0.00 0.00 39.69 2.57
27 28 3.588842 AGGAGTCATCAAACCCAGAATGA 59.411 43.478 0.00 0.00 39.69 2.57
28 29 3.960571 AGGAGTCATCAAACCCAGAATG 58.039 45.455 0.00 0.00 0.00 2.67
29 30 4.290722 AGAAGGAGTCATCAAACCCAGAAT 59.709 41.667 0.00 0.00 0.00 2.40
30 31 3.652869 AGAAGGAGTCATCAAACCCAGAA 59.347 43.478 0.00 0.00 0.00 3.02
31 32 3.008375 CAGAAGGAGTCATCAAACCCAGA 59.992 47.826 0.00 0.00 0.00 3.86
32 33 3.341823 CAGAAGGAGTCATCAAACCCAG 58.658 50.000 0.00 0.00 0.00 4.45
33 34 2.040278 CCAGAAGGAGTCATCAAACCCA 59.960 50.000 0.00 0.00 36.89 4.51
34 35 2.619074 CCCAGAAGGAGTCATCAAACCC 60.619 54.545 0.00 0.00 38.24 4.11
35 36 2.305927 TCCCAGAAGGAGTCATCAAACC 59.694 50.000 0.00 0.00 40.93 3.27
36 37 3.703001 TCCCAGAAGGAGTCATCAAAC 57.297 47.619 0.00 0.00 40.93 2.93
46 47 1.306482 CAGAGGCCTCCCAGAAGGA 60.306 63.158 29.54 0.00 44.91 3.36
47 48 1.614824 ACAGAGGCCTCCCAGAAGG 60.615 63.158 29.54 12.18 39.62 3.46
48 49 1.621672 GGACAGAGGCCTCCCAGAAG 61.622 65.000 29.54 14.21 0.00 2.85
49 50 1.613630 GGACAGAGGCCTCCCAGAA 60.614 63.158 29.54 0.00 0.00 3.02
50 51 2.039624 GGACAGAGGCCTCCCAGA 59.960 66.667 29.54 0.00 0.00 3.86
51 52 3.086600 GGGACAGAGGCCTCCCAG 61.087 72.222 29.54 20.92 45.22 4.45
53 54 4.741239 TGGGGACAGAGGCCTCCC 62.741 72.222 29.54 23.28 45.17 4.30
54 55 1.575447 AATTGGGGACAGAGGCCTCC 61.575 60.000 29.54 14.94 44.54 4.30
55 56 0.394899 CAATTGGGGACAGAGGCCTC 60.395 60.000 26.22 26.22 44.54 4.70
56 57 1.693640 CAATTGGGGACAGAGGCCT 59.306 57.895 3.86 3.86 44.54 5.19
57 58 2.054453 GCAATTGGGGACAGAGGCC 61.054 63.158 7.72 0.00 44.54 5.19
58 59 0.685458 ATGCAATTGGGGACAGAGGC 60.685 55.000 7.72 0.00 44.54 4.70
59 60 1.856629 AATGCAATTGGGGACAGAGG 58.143 50.000 7.72 0.00 44.54 3.69
70 71 6.520272 TGGCTAACAGTTTTACAATGCAATT 58.480 32.000 0.00 0.00 36.63 2.32
71 72 6.095432 TGGCTAACAGTTTTACAATGCAAT 57.905 33.333 0.00 0.00 0.00 3.56
72 73 5.521906 TGGCTAACAGTTTTACAATGCAA 57.478 34.783 0.00 0.00 0.00 4.08
73 74 5.119931 CTGGCTAACAGTTTTACAATGCA 57.880 39.130 0.00 0.00 42.42 3.96
86 87 2.153645 CAGCAATGTCACTGGCTAACA 58.846 47.619 0.00 0.00 34.25 2.41
87 88 2.095567 CACAGCAATGTCACTGGCTAAC 60.096 50.000 0.00 0.00 38.25 2.34
88 89 2.153645 CACAGCAATGTCACTGGCTAA 58.846 47.619 0.00 0.00 38.25 3.09
89 90 1.812235 CACAGCAATGTCACTGGCTA 58.188 50.000 0.00 0.00 38.25 3.93
90 91 1.521450 GCACAGCAATGTCACTGGCT 61.521 55.000 0.00 0.00 38.25 4.75
91 92 1.080974 GCACAGCAATGTCACTGGC 60.081 57.895 0.00 0.00 38.25 4.85
92 93 0.956633 AAGCACAGCAATGTCACTGG 59.043 50.000 0.00 0.00 38.25 4.00
93 94 1.605232 TCAAGCACAGCAATGTCACTG 59.395 47.619 0.00 0.00 39.86 3.66
94 95 1.971481 TCAAGCACAGCAATGTCACT 58.029 45.000 0.00 0.00 0.00 3.41
95 96 2.033801 ACTTCAAGCACAGCAATGTCAC 59.966 45.455 0.00 0.00 0.00 3.67
96 97 2.300433 ACTTCAAGCACAGCAATGTCA 58.700 42.857 0.00 0.00 0.00 3.58
97 98 3.360249 AACTTCAAGCACAGCAATGTC 57.640 42.857 0.00 0.00 0.00 3.06
98 99 3.806625 AAACTTCAAGCACAGCAATGT 57.193 38.095 0.00 0.00 0.00 2.71
99 100 5.119588 CCATTAAACTTCAAGCACAGCAATG 59.880 40.000 0.00 0.00 0.00 2.82
100 101 5.010922 TCCATTAAACTTCAAGCACAGCAAT 59.989 36.000 0.00 0.00 0.00 3.56
101 102 4.340666 TCCATTAAACTTCAAGCACAGCAA 59.659 37.500 0.00 0.00 0.00 3.91
102 103 3.888323 TCCATTAAACTTCAAGCACAGCA 59.112 39.130 0.00 0.00 0.00 4.41
103 104 4.503741 TCCATTAAACTTCAAGCACAGC 57.496 40.909 0.00 0.00 0.00 4.40
104 105 7.116805 GGAAATTCCATTAAACTTCAAGCACAG 59.883 37.037 7.23 0.00 36.28 3.66
105 106 6.928492 GGAAATTCCATTAAACTTCAAGCACA 59.072 34.615 7.23 0.00 36.28 4.57
106 107 6.928492 TGGAAATTCCATTAAACTTCAAGCAC 59.072 34.615 11.23 0.00 42.67 4.40
107 108 7.060383 TGGAAATTCCATTAAACTTCAAGCA 57.940 32.000 11.23 0.00 42.67 3.91
122 123 2.442413 TGACGGGAACATGGAAATTCC 58.558 47.619 4.79 4.79 43.23 3.01
123 124 4.513198 TTTGACGGGAACATGGAAATTC 57.487 40.909 0.00 0.00 0.00 2.17
124 125 4.946478 TTTTGACGGGAACATGGAAATT 57.054 36.364 0.00 0.00 0.00 1.82
125 126 4.946478 TTTTTGACGGGAACATGGAAAT 57.054 36.364 0.00 0.00 0.00 2.17
171 172 5.294799 TCACGTACATGCGGCTATAATTTTT 59.705 36.000 0.00 0.00 35.98 1.94
176 177 3.243602 ACATCACGTACATGCGGCTATAA 60.244 43.478 0.00 0.00 35.98 0.98
177 178 2.295070 ACATCACGTACATGCGGCTATA 59.705 45.455 0.00 0.00 35.98 1.31
179 180 0.458260 ACATCACGTACATGCGGCTA 59.542 50.000 0.00 0.00 35.98 3.93
213 214 1.589320 GTTGTTGCGTCACGTGTTCTA 59.411 47.619 16.51 0.00 0.00 2.10
214 215 0.372334 GTTGTTGCGTCACGTGTTCT 59.628 50.000 16.51 0.00 0.00 3.01
254 255 6.291377 TGATGGGCTGAGAATAACACTATTC 58.709 40.000 0.00 0.00 42.61 1.75
259 260 5.643379 TTTTGATGGGCTGAGAATAACAC 57.357 39.130 0.00 0.00 0.00 3.32
270 271 6.872585 TTAGGATTTGAATTTTGATGGGCT 57.127 33.333 0.00 0.00 0.00 5.19
271 272 8.510243 AATTTAGGATTTGAATTTTGATGGGC 57.490 30.769 0.00 0.00 0.00 5.36
279 282 8.931775 GCGGTGTTAAATTTAGGATTTGAATTT 58.068 29.630 0.00 0.00 36.98 1.82
322 325 5.890424 ACCAACATCGTCGGAAATAAATT 57.110 34.783 0.00 0.00 0.00 1.82
332 335 0.711670 CCACGTAACCAACATCGTCG 59.288 55.000 0.00 0.00 34.30 5.12
334 337 3.005684 TCTTACCACGTAACCAACATCGT 59.994 43.478 0.00 0.00 36.99 3.73
336 339 4.624452 GTCTCTTACCACGTAACCAACATC 59.376 45.833 0.00 0.00 0.00 3.06
337 340 4.282703 AGTCTCTTACCACGTAACCAACAT 59.717 41.667 0.00 0.00 0.00 2.71
339 342 4.233005 GAGTCTCTTACCACGTAACCAAC 58.767 47.826 0.00 0.00 0.00 3.77
340 343 3.890756 TGAGTCTCTTACCACGTAACCAA 59.109 43.478 0.65 0.00 0.00 3.67
341 344 3.489355 TGAGTCTCTTACCACGTAACCA 58.511 45.455 0.65 0.00 0.00 3.67
342 345 4.510038 TTGAGTCTCTTACCACGTAACC 57.490 45.455 0.65 0.00 0.00 2.85
343 346 5.467705 ACATTGAGTCTCTTACCACGTAAC 58.532 41.667 0.65 0.00 0.00 2.50
366 369 8.547967 AAAGACTAAGCGTCAAATCATCTTAA 57.452 30.769 0.00 0.00 45.32 1.85
385 388 9.349713 CTCTATGGTGAGTATCTCTAAAAGACT 57.650 37.037 0.00 0.00 36.65 3.24
386 389 9.344772 TCTCTATGGTGAGTATCTCTAAAAGAC 57.655 37.037 0.00 0.00 34.72 3.01
387 390 9.344772 GTCTCTATGGTGAGTATCTCTAAAAGA 57.655 37.037 0.00 0.00 35.58 2.52
388 391 8.286800 CGTCTCTATGGTGAGTATCTCTAAAAG 58.713 40.741 0.00 0.00 35.68 2.27
433 459 3.898627 CTCGCACGAGGAACGCTGT 62.899 63.158 12.17 0.00 46.94 4.40
444 470 0.504384 CAGCCGATTAATCTCGCACG 59.496 55.000 20.24 11.02 37.33 5.34
458 484 1.447317 AACAGTTTCCAGTGCAGCCG 61.447 55.000 0.00 0.00 0.00 5.52
474 500 4.022242 TCCTTCGGTGTTTGTTCAAAAACA 60.022 37.500 16.95 4.16 45.38 2.83
475 501 4.487019 TCCTTCGGTGTTTGTTCAAAAAC 58.513 39.130 9.37 9.37 39.90 2.43
502 528 2.504244 CGTCCCGCTCTTCACGTC 60.504 66.667 0.00 0.00 0.00 4.34
507 533 2.507324 GCTCACGTCCCGCTCTTC 60.507 66.667 0.00 0.00 0.00 2.87
546 572 2.726351 CGGGGGCTGGAGAACTCTC 61.726 68.421 0.00 0.00 42.14 3.20
553 579 1.961180 CTACTTCACGGGGGCTGGAG 61.961 65.000 0.00 0.00 0.00 3.86
578 609 4.025401 CGAACGCCCCAGTGCAAC 62.025 66.667 0.00 0.00 0.00 4.17
622 653 0.530431 CATCGCCGTCATCATCACCA 60.530 55.000 0.00 0.00 0.00 4.17
624 655 1.153597 TGCATCGCCGTCATCATCAC 61.154 55.000 0.00 0.00 0.00 3.06
625 656 0.877213 CTGCATCGCCGTCATCATCA 60.877 55.000 0.00 0.00 0.00 3.07
626 657 1.858041 CTGCATCGCCGTCATCATC 59.142 57.895 0.00 0.00 0.00 2.92
627 658 2.249535 GCTGCATCGCCGTCATCAT 61.250 57.895 0.00 0.00 0.00 2.45
628 659 2.891936 GCTGCATCGCCGTCATCA 60.892 61.111 0.00 0.00 0.00 3.07
629 660 3.643978 GGCTGCATCGCCGTCATC 61.644 66.667 0.59 0.00 40.79 2.92
749 785 3.529341 ATGTGTCGCCACTCGCCAA 62.529 57.895 0.00 0.00 42.34 4.52
863 1829 6.490566 TTTTTGGCGGTTAGAATACTCTTC 57.509 37.500 0.00 0.00 32.70 2.87
927 1896 5.770162 CCCCTGATTAAGCCCTAGTTTAATG 59.230 44.000 8.16 0.00 38.88 1.90
928 1897 5.693051 GCCCCTGATTAAGCCCTAGTTTAAT 60.693 44.000 0.00 4.66 40.74 1.40
930 1899 3.137728 GCCCCTGATTAAGCCCTAGTTTA 59.862 47.826 0.00 0.00 0.00 2.01
933 1902 1.141185 GCCCCTGATTAAGCCCTAGT 58.859 55.000 0.00 0.00 0.00 2.57
934 1903 0.035458 CGCCCCTGATTAAGCCCTAG 59.965 60.000 0.00 0.00 0.00 3.02
935 1904 0.399376 TCGCCCCTGATTAAGCCCTA 60.399 55.000 0.00 0.00 0.00 3.53
939 1910 3.265791 CTCATATCGCCCCTGATTAAGC 58.734 50.000 0.00 0.00 0.00 3.09
970 1947 2.269241 GGGCTTTGAGGACGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
1085 2063 4.309950 GGGTTGACAGGTCGGCGT 62.310 66.667 6.85 0.00 0.00 5.68
1094 2072 3.562232 GGACGGTGGGGGTTGACA 61.562 66.667 0.00 0.00 0.00 3.58
1207 2188 0.905357 CCCTTGAACTCGACCTGGAT 59.095 55.000 0.00 0.00 0.00 3.41
1255 2236 2.520968 GAGTTTGGCCACCCACCT 59.479 61.111 3.88 0.00 41.97 4.00
1360 2341 2.510238 GGCGAGCTGAAGCATCGT 60.510 61.111 18.54 0.00 45.16 3.73
1908 2901 1.603739 GAACCTGGCCAAGACCCAC 60.604 63.158 8.77 0.00 0.00 4.61
1968 2961 2.031012 CAAGGCTGGTGACGAGCA 59.969 61.111 20.81 0.00 36.57 4.26
2002 2995 4.686839 GGTCAATTACCTTGTGAGCTTC 57.313 45.455 0.00 0.00 45.75 3.86
2097 3090 0.977395 AACTCTTCTTGGGAGACGGG 59.023 55.000 0.00 0.00 35.10 5.28
2253 3246 2.029964 GGCACGTCCTGGTCGAAA 59.970 61.111 19.68 0.00 0.00 3.46
2366 3359 1.202639 ACTCAAACGTCACAGCCATCA 60.203 47.619 0.00 0.00 0.00 3.07
2368 3361 2.224185 TGTACTCAAACGTCACAGCCAT 60.224 45.455 0.00 0.00 0.00 4.40
2473 3466 0.112412 ATGTTTTTGTCCCTCGGGCT 59.888 50.000 0.00 0.00 34.68 5.19
2478 3471 2.558359 CACCTCCATGTTTTTGTCCCTC 59.442 50.000 0.00 0.00 0.00 4.30
2595 3588 4.380531 GAATGTCAGTCTGTGAAACCTCA 58.619 43.478 0.00 0.00 36.74 3.86
2740 3733 8.868916 TGAAGCTTGTTTCACATTTTTAGTTTC 58.131 29.630 2.10 0.00 32.39 2.78
2808 3801 1.959085 CACATGACCCACAGTTGCC 59.041 57.895 0.00 0.00 0.00 4.52
2810 3803 0.311790 GTGCACATGACCCACAGTTG 59.688 55.000 13.17 0.00 0.00 3.16
2812 3805 1.228245 GGTGCACATGACCCACAGT 60.228 57.895 20.43 0.00 0.00 3.55
2813 3806 0.957395 GAGGTGCACATGACCCACAG 60.957 60.000 20.43 0.00 33.51 3.66
2814 3807 1.073025 GAGGTGCACATGACCCACA 59.927 57.895 20.43 0.00 33.51 4.17
2816 3809 0.036732 GAAGAGGTGCACATGACCCA 59.963 55.000 20.43 0.00 33.51 4.51
2817 3810 0.036732 TGAAGAGGTGCACATGACCC 59.963 55.000 20.43 0.00 33.51 4.46
2818 3811 1.808945 CTTGAAGAGGTGCACATGACC 59.191 52.381 20.43 0.00 0.00 4.02
2819 3812 1.198637 GCTTGAAGAGGTGCACATGAC 59.801 52.381 20.43 0.00 0.00 3.06
2820 3813 1.527034 GCTTGAAGAGGTGCACATGA 58.473 50.000 20.43 0.00 0.00 3.07
2822 3815 0.035317 TCGCTTGAAGAGGTGCACAT 59.965 50.000 20.43 12.71 0.00 3.21
2824 3817 1.905922 GCTCGCTTGAAGAGGTGCAC 61.906 60.000 8.80 8.80 36.31 4.57
2825 3818 1.669115 GCTCGCTTGAAGAGGTGCA 60.669 57.895 0.00 0.00 36.31 4.57
2826 3819 1.633852 CTGCTCGCTTGAAGAGGTGC 61.634 60.000 0.00 2.22 36.31 5.01
2832 3825 1.127582 GTGCTTACTGCTCGCTTGAAG 59.872 52.381 0.00 0.00 43.37 3.02
2833 3826 1.148310 GTGCTTACTGCTCGCTTGAA 58.852 50.000 0.00 0.00 43.37 2.69
2866 3859 0.039618 CCCACAGTTGCCCCAATAGT 59.960 55.000 0.00 0.00 0.00 2.12
2949 3942 1.308069 CCACCTCATGTTCCTTGCCG 61.308 60.000 0.00 0.00 0.00 5.69
2988 3981 1.412710 ACGTCTTCAAGACTTGGCTGA 59.587 47.619 15.66 8.17 42.92 4.26
3036 4029 1.144708 TGTTCCTTGCCCACTGATTCA 59.855 47.619 0.00 0.00 0.00 2.57
3116 4109 7.777910 CCATAAGGGTATCTGATTGTTGGTTTA 59.222 37.037 0.00 0.00 0.00 2.01
3158 4151 0.689623 ACCTGAGCTCTTCCTGTTGG 59.310 55.000 16.19 6.65 0.00 3.77
3184 4177 5.886960 AATAGAACTGCCACTTCATGAAC 57.113 39.130 3.38 0.00 0.00 3.18
3321 4315 4.946157 CCAGTTCAGGATTTGCATCTACTT 59.054 41.667 0.00 0.00 0.00 2.24
3452 4446 3.057734 CAACTTCACGTCTTGGTAGGTC 58.942 50.000 0.00 0.00 0.00 3.85
3478 4472 4.328118 AGCCTCTTCAATCATTTCCCTT 57.672 40.909 0.00 0.00 0.00 3.95
3493 4487 1.947597 CTCGAGCAGCAGAAGCCTCT 61.948 60.000 0.00 0.00 43.56 3.69
3550 4544 1.401199 GCTGCAATCTCTTCCTTCAGC 59.599 52.381 0.00 0.00 38.62 4.26
3588 4582 1.575447 GGGGCTTCCATCCCTCAAGT 61.575 60.000 0.00 0.00 43.41 3.16
3809 4807 4.038162 GCCTCGTAGATAGTCATGTTCCTT 59.962 45.833 0.00 0.00 33.89 3.36
3848 4846 0.379669 GAGATGCCGACCAATGCTTG 59.620 55.000 0.00 0.00 0.00 4.01
3855 4853 3.766644 CATCAAGAGATGCCGACCA 57.233 52.632 0.00 0.00 44.61 4.02
3864 4862 2.268920 GCCGCACCCATCAAGAGA 59.731 61.111 0.00 0.00 0.00 3.10
3948 4947 4.281182 AGGATGCGAGTATATTCGGTTCTT 59.719 41.667 17.91 1.76 40.79 2.52
4385 5392 9.447157 TTGGAAAAAGACTCACAATTGAAAATT 57.553 25.926 13.59 0.00 0.00 1.82
4386 5393 9.101655 CTTGGAAAAAGACTCACAATTGAAAAT 57.898 29.630 13.59 0.00 0.00 1.82
4436 5443 7.606858 TCAAGAGAGAATTAGCATTTCACAG 57.393 36.000 0.00 0.00 0.00 3.66
4491 5498 4.977963 CACAAATCATAATAAAGGCAGCGG 59.022 41.667 0.00 0.00 0.00 5.52
4672 5756 8.713737 AAAACAACTTTCGACTACTTCTAACT 57.286 30.769 0.00 0.00 0.00 2.24
4696 5780 6.103330 TCTTACGCATGCTGTTGTTATAGAA 58.897 36.000 17.13 3.64 0.00 2.10
4948 7447 8.598924 CATATAGCTTACACTCAACTTGTTCAG 58.401 37.037 0.00 0.00 0.00 3.02
4955 7454 7.603180 TCATCCATATAGCTTACACTCAACT 57.397 36.000 0.00 0.00 0.00 3.16
4985 7484 4.630111 TCCAAAAATGGTGCTTTCACATC 58.370 39.130 0.00 0.00 44.87 3.06
5017 7516 6.884280 AAGTGGGATTTACAAGAAAGACAG 57.116 37.500 0.00 0.00 0.00 3.51
5074 7574 9.601217 CTGAAAAATAGTACTAGTTGGCAGTAT 57.399 33.333 23.52 6.41 31.46 2.12
5105 7605 6.311445 GCATATGTGGAGGAAGAATGTATACG 59.689 42.308 4.29 0.00 0.00 3.06
5112 7612 8.051535 CCTAATATGCATATGTGGAGGAAGAAT 58.948 37.037 23.48 7.77 0.00 2.40
5119 7620 8.699130 TCACTATCCTAATATGCATATGTGGAG 58.301 37.037 29.02 22.92 32.41 3.86
5127 7628 8.209584 GGTGATCATCACTATCCTAATATGCAT 58.790 37.037 17.46 3.79 46.19 3.96
5153 7654 1.133407 GCAGTCTACTCAACCTCCTCG 59.867 57.143 0.00 0.00 0.00 4.63
5191 9133 2.301870 ACAACCTCTTGCGATGGTCTTA 59.698 45.455 0.00 0.00 32.98 2.10
5307 9249 4.070009 GGGGTTGTACCAAAGTAGAAGTG 58.930 47.826 0.00 0.00 41.02 3.16
5308 9250 3.073503 GGGGGTTGTACCAAAGTAGAAGT 59.926 47.826 0.00 0.00 41.02 3.01
5309 9251 3.682696 GGGGGTTGTACCAAAGTAGAAG 58.317 50.000 0.00 0.00 41.02 2.85
5310 9252 3.793819 GGGGGTTGTACCAAAGTAGAA 57.206 47.619 0.00 0.00 41.02 2.10
5327 9269 3.630312 CGTCCATTAATGTGTTTAGGGGG 59.370 47.826 14.25 0.00 0.00 5.40
5328 9270 4.519213 TCGTCCATTAATGTGTTTAGGGG 58.481 43.478 14.25 0.00 0.00 4.79
5329 9271 5.424757 TCTCGTCCATTAATGTGTTTAGGG 58.575 41.667 14.25 0.00 0.00 3.53
5330 9272 6.986817 AGATCTCGTCCATTAATGTGTTTAGG 59.013 38.462 14.25 0.00 0.00 2.69
5331 9273 7.923344 AGAGATCTCGTCCATTAATGTGTTTAG 59.077 37.037 16.97 5.47 34.09 1.85
5332 9274 7.782049 AGAGATCTCGTCCATTAATGTGTTTA 58.218 34.615 16.97 0.00 34.09 2.01
5333 9275 6.644347 AGAGATCTCGTCCATTAATGTGTTT 58.356 36.000 16.97 0.00 34.09 2.83
5334 9276 6.227298 AGAGATCTCGTCCATTAATGTGTT 57.773 37.500 16.97 0.00 34.09 3.32
5335 9277 5.221342 GGAGAGATCTCGTCCATTAATGTGT 60.221 44.000 24.76 4.29 43.76 3.72
5336 9278 5.221322 TGGAGAGATCTCGTCCATTAATGTG 60.221 44.000 26.88 6.20 43.76 3.21
5337 9279 4.895889 TGGAGAGATCTCGTCCATTAATGT 59.104 41.667 26.88 6.21 43.76 2.71
5338 9280 5.459536 TGGAGAGATCTCGTCCATTAATG 57.540 43.478 26.88 8.58 43.76 1.90
5339 9281 6.153680 GGTATGGAGAGATCTCGTCCATTAAT 59.846 42.308 35.81 25.38 40.95 1.40
5340 9282 5.477291 GGTATGGAGAGATCTCGTCCATTAA 59.523 44.000 35.81 25.99 40.95 1.40
5341 9283 5.010933 GGTATGGAGAGATCTCGTCCATTA 58.989 45.833 35.81 26.08 40.95 1.90
5342 9284 3.829601 GGTATGGAGAGATCTCGTCCATT 59.170 47.826 35.81 26.69 40.95 3.16
5343 9285 3.426615 GGTATGGAGAGATCTCGTCCAT 58.573 50.000 34.47 34.47 43.44 3.41
5344 9286 2.489255 GGGTATGGAGAGATCTCGTCCA 60.489 54.545 29.97 29.97 43.76 4.02
5345 9287 2.164338 GGGTATGGAGAGATCTCGTCC 58.836 57.143 23.73 23.73 43.76 4.79
5346 9288 2.164338 GGGGTATGGAGAGATCTCGTC 58.836 57.143 16.97 13.82 43.76 4.20
5347 9289 1.783979 AGGGGTATGGAGAGATCTCGT 59.216 52.381 16.97 5.78 43.76 4.18
5348 9290 2.595750 AGGGGTATGGAGAGATCTCG 57.404 55.000 16.97 0.00 43.76 4.04
5349 9291 3.850752 TGAAGGGGTATGGAGAGATCTC 58.149 50.000 15.29 15.29 42.14 2.75
5350 9292 4.500389 ATGAAGGGGTATGGAGAGATCT 57.500 45.455 0.00 0.00 0.00 2.75
5351 9293 6.882768 ATTATGAAGGGGTATGGAGAGATC 57.117 41.667 0.00 0.00 0.00 2.75
5352 9294 8.757307 TTTATTATGAAGGGGTATGGAGAGAT 57.243 34.615 0.00 0.00 0.00 2.75
5353 9295 7.237679 CCTTTATTATGAAGGGGTATGGAGAGA 59.762 40.741 7.77 0.00 39.99 3.10
5354 9296 7.398024 CCTTTATTATGAAGGGGTATGGAGAG 58.602 42.308 7.77 0.00 39.99 3.20
5355 9297 7.329746 CCTTTATTATGAAGGGGTATGGAGA 57.670 40.000 7.77 0.00 39.99 3.71
5365 9307 7.017651 AGACCATCCTACCCTTTATTATGAAGG 59.982 40.741 8.60 8.60 42.68 3.46
5366 9308 7.978925 AGACCATCCTACCCTTTATTATGAAG 58.021 38.462 0.00 0.00 0.00 3.02
5367 9309 7.947782 AGACCATCCTACCCTTTATTATGAA 57.052 36.000 0.00 0.00 0.00 2.57
5368 9310 7.947782 AAGACCATCCTACCCTTTATTATGA 57.052 36.000 0.00 0.00 0.00 2.15
5369 9311 7.998964 ACAAAGACCATCCTACCCTTTATTATG 59.001 37.037 0.00 0.00 0.00 1.90
5370 9312 8.114301 ACAAAGACCATCCTACCCTTTATTAT 57.886 34.615 0.00 0.00 0.00 1.28
5371 9313 7.519347 ACAAAGACCATCCTACCCTTTATTA 57.481 36.000 0.00 0.00 0.00 0.98
5372 9314 6.402981 ACAAAGACCATCCTACCCTTTATT 57.597 37.500 0.00 0.00 0.00 1.40
5373 9315 6.445786 TGTACAAAGACCATCCTACCCTTTAT 59.554 38.462 0.00 0.00 0.00 1.40
5374 9316 5.786457 TGTACAAAGACCATCCTACCCTTTA 59.214 40.000 0.00 0.00 0.00 1.85
5375 9317 4.600111 TGTACAAAGACCATCCTACCCTTT 59.400 41.667 0.00 0.00 0.00 3.11
5376 9318 4.019591 GTGTACAAAGACCATCCTACCCTT 60.020 45.833 0.00 0.00 0.00 3.95
5377 9319 3.518303 GTGTACAAAGACCATCCTACCCT 59.482 47.826 0.00 0.00 0.00 4.34
5378 9320 3.370209 GGTGTACAAAGACCATCCTACCC 60.370 52.174 0.00 0.00 38.92 3.69
5379 9321 3.370209 GGGTGTACAAAGACCATCCTACC 60.370 52.174 0.00 0.00 40.90 3.18
5380 9322 3.262405 TGGGTGTACAAAGACCATCCTAC 59.738 47.826 0.00 0.00 40.90 3.18
5381 9323 3.262405 GTGGGTGTACAAAGACCATCCTA 59.738 47.826 11.50 0.00 40.90 2.94
5382 9324 2.039879 GTGGGTGTACAAAGACCATCCT 59.960 50.000 11.50 0.00 40.90 3.24
5383 9325 2.433436 GTGGGTGTACAAAGACCATCC 58.567 52.381 11.50 0.66 40.90 3.51
5384 9326 2.073816 CGTGGGTGTACAAAGACCATC 58.926 52.381 11.50 6.46 40.90 3.51
5385 9327 1.880646 GCGTGGGTGTACAAAGACCAT 60.881 52.381 11.50 0.00 40.90 3.55
5386 9328 0.533308 GCGTGGGTGTACAAAGACCA 60.533 55.000 0.00 1.15 40.90 4.02
5387 9329 1.232621 GGCGTGGGTGTACAAAGACC 61.233 60.000 0.00 0.00 38.34 3.85
5388 9330 1.562575 CGGCGTGGGTGTACAAAGAC 61.563 60.000 0.00 0.00 0.00 3.01
5389 9331 1.301087 CGGCGTGGGTGTACAAAGA 60.301 57.895 0.00 0.00 0.00 2.52
5390 9332 0.672401 ATCGGCGTGGGTGTACAAAG 60.672 55.000 6.85 0.00 0.00 2.77
5391 9333 0.607112 TATCGGCGTGGGTGTACAAA 59.393 50.000 6.85 0.00 0.00 2.83
5392 9334 0.108709 GTATCGGCGTGGGTGTACAA 60.109 55.000 6.85 0.00 0.00 2.41
5393 9335 1.249469 TGTATCGGCGTGGGTGTACA 61.249 55.000 6.85 0.00 0.00 2.90
5394 9336 0.103572 ATGTATCGGCGTGGGTGTAC 59.896 55.000 6.85 3.00 0.00 2.90
5395 9337 1.689984 TATGTATCGGCGTGGGTGTA 58.310 50.000 6.85 0.00 0.00 2.90
5396 9338 0.825410 TTATGTATCGGCGTGGGTGT 59.175 50.000 6.85 0.00 0.00 4.16
5397 9339 2.066262 GATTATGTATCGGCGTGGGTG 58.934 52.381 6.85 0.00 0.00 4.61
5398 9340 1.968493 AGATTATGTATCGGCGTGGGT 59.032 47.619 6.85 0.00 38.36 4.51
5399 9341 2.337583 CAGATTATGTATCGGCGTGGG 58.662 52.381 6.85 0.00 38.36 4.61
5400 9342 1.726791 GCAGATTATGTATCGGCGTGG 59.273 52.381 6.85 0.00 42.98 4.94
5404 9346 2.080286 ACCGCAGATTATGTATCGGC 57.920 50.000 0.00 0.00 46.85 5.54
5405 9347 5.418310 AAAAACCGCAGATTATGTATCGG 57.582 39.130 0.00 0.00 38.36 4.18
5431 9373 7.592938 CACAGGCTGTGTATAATTCTCAAAAA 58.407 34.615 34.00 0.00 43.08 1.94
5432 9374 7.144722 CACAGGCTGTGTATAATTCTCAAAA 57.855 36.000 34.00 0.00 43.08 2.44
5433 9375 6.741992 CACAGGCTGTGTATAATTCTCAAA 57.258 37.500 34.00 0.00 43.08 2.69
5446 9388 4.322424 TGTAAGGTACATACACAGGCTGTG 60.322 45.833 38.61 38.61 42.95 3.66
5447 9389 3.835978 TGTAAGGTACATACACAGGCTGT 59.164 43.478 15.88 15.88 37.61 4.40
5448 9390 4.465632 TGTAAGGTACATACACAGGCTG 57.534 45.455 14.16 14.16 37.61 4.85
5455 9397 2.166870 CGGGCTGTGTAAGGTACATACA 59.833 50.000 6.65 6.65 40.36 2.29
5456 9398 2.482490 CCGGGCTGTGTAAGGTACATAC 60.482 54.545 0.00 0.00 41.34 2.39
5457 9399 1.758280 CCGGGCTGTGTAAGGTACATA 59.242 52.381 0.00 0.00 41.34 2.29
5458 9400 0.539986 CCGGGCTGTGTAAGGTACAT 59.460 55.000 0.00 0.00 41.34 2.29
5459 9401 1.976898 CCGGGCTGTGTAAGGTACA 59.023 57.895 0.00 0.00 36.08 2.90
5460 9402 1.449070 GCCGGGCTGTGTAAGGTAC 60.449 63.158 12.87 0.00 0.00 3.34
5461 9403 2.983791 GCCGGGCTGTGTAAGGTA 59.016 61.111 12.87 0.00 0.00 3.08
5462 9404 4.388499 CGCCGGGCTGTGTAAGGT 62.388 66.667 18.34 0.00 0.00 3.50
5463 9405 3.009192 TACGCCGGGCTGTGTAAGG 62.009 63.158 18.34 0.73 0.00 2.69
5464 9406 1.808390 GTACGCCGGGCTGTGTAAG 60.808 63.158 18.34 1.54 33.37 2.34
5465 9407 1.890625 ATGTACGCCGGGCTGTGTAA 61.891 55.000 18.34 7.35 33.37 2.41
5466 9408 2.352821 ATGTACGCCGGGCTGTGTA 61.353 57.895 18.34 9.26 0.00 2.90
5467 9409 3.702048 ATGTACGCCGGGCTGTGT 61.702 61.111 18.34 10.33 0.00 3.72
5468 9410 3.195002 CATGTACGCCGGGCTGTG 61.195 66.667 18.34 3.96 0.00 3.66
5471 9413 4.402528 TTGCATGTACGCCGGGCT 62.403 61.111 18.34 6.83 0.00 5.19
5472 9414 3.876198 CTTGCATGTACGCCGGGC 61.876 66.667 9.54 9.54 0.00 6.13
5473 9415 1.977594 GAACTTGCATGTACGCCGGG 61.978 60.000 2.18 0.00 0.00 5.73
5474 9416 1.295357 TGAACTTGCATGTACGCCGG 61.295 55.000 5.56 0.00 0.00 6.13
5475 9417 0.515127 TTGAACTTGCATGTACGCCG 59.485 50.000 5.56 0.00 0.00 6.46
5476 9418 1.535462 AGTTGAACTTGCATGTACGCC 59.465 47.619 5.56 0.00 0.00 5.68
5477 9419 2.574322 CAGTTGAACTTGCATGTACGC 58.426 47.619 5.56 0.08 0.00 4.42
5478 9420 2.095768 CCCAGTTGAACTTGCATGTACG 60.096 50.000 5.56 0.00 0.00 3.67
5479 9421 2.351738 GCCCAGTTGAACTTGCATGTAC 60.352 50.000 5.56 1.02 0.00 2.90
5480 9422 1.885887 GCCCAGTTGAACTTGCATGTA 59.114 47.619 5.56 0.00 0.00 2.29
5481 9423 0.675633 GCCCAGTTGAACTTGCATGT 59.324 50.000 10.69 0.00 0.00 3.21
5482 9424 0.037975 GGCCCAGTTGAACTTGCATG 60.038 55.000 15.77 0.00 0.00 4.06
5483 9425 1.526575 CGGCCCAGTTGAACTTGCAT 61.527 55.000 15.77 0.00 0.00 3.96
5484 9426 2.192861 CGGCCCAGTTGAACTTGCA 61.193 57.895 15.77 0.00 0.00 4.08
5485 9427 2.644992 CGGCCCAGTTGAACTTGC 59.355 61.111 7.81 7.81 0.00 4.01
5486 9428 2.919494 GCCGGCCCAGTTGAACTTG 61.919 63.158 18.11 0.00 0.00 3.16
5487 9429 2.597510 GCCGGCCCAGTTGAACTT 60.598 61.111 18.11 0.00 0.00 2.66
5488 9430 4.660938 GGCCGGCCCAGTTGAACT 62.661 66.667 36.64 0.00 0.00 3.01
5501 9443 4.047059 CTGTTTGCTGCTGGGCCG 62.047 66.667 0.00 0.00 0.00 6.13
5502 9444 1.589716 CTACTGTTTGCTGCTGGGCC 61.590 60.000 0.00 0.00 0.00 5.80
5503 9445 0.606401 TCTACTGTTTGCTGCTGGGC 60.606 55.000 0.00 0.00 0.00 5.36
5504 9446 1.896220 TTCTACTGTTTGCTGCTGGG 58.104 50.000 0.00 0.00 0.00 4.45
5505 9447 3.988379 TTTTCTACTGTTTGCTGCTGG 57.012 42.857 0.00 0.00 0.00 4.85
5506 9448 4.022935 TGGATTTTCTACTGTTTGCTGCTG 60.023 41.667 0.00 0.00 0.00 4.41
5507 9449 4.144297 TGGATTTTCTACTGTTTGCTGCT 58.856 39.130 0.00 0.00 0.00 4.24
5508 9450 4.503741 TGGATTTTCTACTGTTTGCTGC 57.496 40.909 0.00 0.00 0.00 5.25
5509 9451 7.277539 TGTTTTTGGATTTTCTACTGTTTGCTG 59.722 33.333 0.00 0.00 0.00 4.41
5510 9452 7.327214 TGTTTTTGGATTTTCTACTGTTTGCT 58.673 30.769 0.00 0.00 0.00 3.91
5511 9453 7.532682 TGTTTTTGGATTTTCTACTGTTTGC 57.467 32.000 0.00 0.00 0.00 3.68
5512 9454 9.919348 CAATGTTTTTGGATTTTCTACTGTTTG 57.081 29.630 0.00 0.00 0.00 2.93
5513 9455 9.108284 CCAATGTTTTTGGATTTTCTACTGTTT 57.892 29.630 0.00 0.00 42.06 2.83
5514 9456 8.482128 TCCAATGTTTTTGGATTTTCTACTGTT 58.518 29.630 2.98 0.00 43.17 3.16
5515 9457 8.017418 TCCAATGTTTTTGGATTTTCTACTGT 57.983 30.769 2.98 0.00 43.17 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.