Multiple sequence alignment - TraesCS1B01G251800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G251800 chr1B 100.000 3579 0 0 1 3579 444684080 444680502 0.000000e+00 6610.0
1 TraesCS1B01G251800 chr1A 92.671 1378 72 15 660 2021 426882899 426881535 0.000000e+00 1958.0
2 TraesCS1B01G251800 chr1A 89.336 422 36 7 2105 2519 426881537 426881118 4.090000e-144 521.0
3 TraesCS1B01G251800 chr1A 86.449 428 45 7 56 470 426883492 426883065 1.170000e-124 457.0
4 TraesCS1B01G251800 chr1A 79.174 605 60 30 2519 3083 426880740 426880162 3.400000e-95 359.0
5 TraesCS1B01G251800 chr1D 90.862 1346 48 29 708 2021 329726702 329725400 0.000000e+00 1735.0
6 TraesCS1B01G251800 chr1D 85.225 1022 79 28 2105 3071 329725402 329724398 0.000000e+00 985.0
7 TraesCS1B01G251800 chr4D 79.040 396 72 9 1296 1681 450148258 450147864 9.860000e-66 261.0
8 TraesCS1B01G251800 chr4B 77.451 408 69 9 1296 1681 562927915 562927509 4.650000e-54 222.0
9 TraesCS1B01G251800 chr4A 77.451 408 69 10 1296 1681 16506024 16506430 4.650000e-54 222.0
10 TraesCS1B01G251800 chr4A 73.013 604 99 39 2935 3496 445200078 445200659 1.720000e-33 154.0
11 TraesCS1B01G251800 chr2D 73.502 434 67 28 3112 3505 580259711 580259286 1.750000e-23 121.0
12 TraesCS1B01G251800 chr2D 75.000 236 45 11 3117 3342 59629641 59629872 2.940000e-16 97.1
13 TraesCS1B01G251800 chr2D 91.045 67 6 0 3117 3183 11017595 11017661 1.370000e-14 91.6
14 TraesCS1B01G251800 chr2D 81.609 87 13 2 3112 3196 620444178 620444263 6.410000e-08 69.4
15 TraesCS1B01G251800 chr5A 76.887 212 40 6 3191 3393 51745634 51745423 1.050000e-20 111.0
16 TraesCS1B01G251800 chr3A 76.522 230 39 13 2918 3142 606723190 606723409 1.050000e-20 111.0
17 TraesCS1B01G251800 chr2B 87.500 72 9 0 3112 3183 680871395 680871466 2.290000e-12 84.2
18 TraesCS1B01G251800 chr6B 79.032 124 23 2 3117 3240 134830044 134830164 8.240000e-12 82.4
19 TraesCS1B01G251800 chr5D 90.909 55 5 0 3129 3183 399841857 399841911 1.380000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G251800 chr1B 444680502 444684080 3578 True 6610.00 6610 100.0000 1 3579 1 chr1B.!!$R1 3578
1 TraesCS1B01G251800 chr1A 426880162 426883492 3330 True 823.75 1958 86.9075 56 3083 4 chr1A.!!$R1 3027
2 TraesCS1B01G251800 chr1D 329724398 329726702 2304 True 1360.00 1735 88.0435 708 3071 2 chr1D.!!$R1 2363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 205 0.036388 TGGTCAAGATTCCGTCAGGC 60.036 55.0 0.00 0.00 37.47 4.85 F
472 486 0.040958 GTGCAACTGCTGAAAGACGG 60.041 55.0 2.95 0.00 42.66 4.79 F
495 509 0.107703 CACGGGTACATGCATCTGGT 60.108 55.0 0.00 0.00 0.00 4.00 F
2039 2131 0.158096 GTAATAACGCCGCGATCACG 59.842 55.0 21.79 8.59 42.93 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1810 0.108138 CTCCGAAGAAGAACCGCCAT 60.108 55.0 0.00 0.0 0.00 4.40 R
2041 2133 0.169009 CAGAGTCTGCATCGTCGTCA 59.831 55.0 7.33 0.0 0.00 4.35 R
2042 2134 0.169230 ACAGAGTCTGCATCGTCGTC 59.831 55.0 20.31 0.0 34.37 4.20 R
3296 3855 0.777446 AGTGGCATGGGTGTTACCTT 59.223 50.0 0.00 0.0 38.64 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.146010 AGTGAAAGTTTTGCCACTTTTCA 57.854 34.783 7.09 2.87 45.23 2.69
23 24 4.929211 AGTGAAAGTTTTGCCACTTTTCAC 59.071 37.500 16.41 16.41 45.23 3.18
24 25 4.929211 GTGAAAGTTTTGCCACTTTTCACT 59.071 37.500 16.72 0.00 45.23 3.41
25 26 5.062183 GTGAAAGTTTTGCCACTTTTCACTC 59.938 40.000 16.72 4.19 45.23 3.51
26 27 3.801114 AGTTTTGCCACTTTTCACTCC 57.199 42.857 0.00 0.00 0.00 3.85
27 28 3.096092 AGTTTTGCCACTTTTCACTCCA 58.904 40.909 0.00 0.00 0.00 3.86
28 29 3.513515 AGTTTTGCCACTTTTCACTCCAA 59.486 39.130 0.00 0.00 0.00 3.53
29 30 4.162131 AGTTTTGCCACTTTTCACTCCAAT 59.838 37.500 0.00 0.00 0.00 3.16
30 31 4.751767 TTTGCCACTTTTCACTCCAATT 57.248 36.364 0.00 0.00 0.00 2.32
31 32 5.860941 TTTGCCACTTTTCACTCCAATTA 57.139 34.783 0.00 0.00 0.00 1.40
32 33 5.452078 TTGCCACTTTTCACTCCAATTAG 57.548 39.130 0.00 0.00 0.00 1.73
33 34 4.469657 TGCCACTTTTCACTCCAATTAGT 58.530 39.130 0.00 0.00 0.00 2.24
34 35 4.518970 TGCCACTTTTCACTCCAATTAGTC 59.481 41.667 0.00 0.00 0.00 2.59
35 36 4.518970 GCCACTTTTCACTCCAATTAGTCA 59.481 41.667 0.00 0.00 0.00 3.41
36 37 5.183904 GCCACTTTTCACTCCAATTAGTCAT 59.816 40.000 0.00 0.00 0.00 3.06
37 38 6.294731 GCCACTTTTCACTCCAATTAGTCATT 60.295 38.462 0.00 0.00 0.00 2.57
38 39 7.661040 CCACTTTTCACTCCAATTAGTCATTT 58.339 34.615 0.00 0.00 0.00 2.32
39 40 8.143835 CCACTTTTCACTCCAATTAGTCATTTT 58.856 33.333 0.00 0.00 0.00 1.82
40 41 9.533253 CACTTTTCACTCCAATTAGTCATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
55 56 1.943293 TTTTTCGTGCCAGGTACGC 59.057 52.632 24.15 0.00 41.09 4.42
56 57 0.533308 TTTTTCGTGCCAGGTACGCT 60.533 50.000 24.15 0.00 41.09 5.07
57 58 0.947180 TTTTCGTGCCAGGTACGCTC 60.947 55.000 24.15 0.00 41.09 5.03
58 59 3.620300 TTCGTGCCAGGTACGCTCG 62.620 63.158 24.15 4.96 41.09 5.03
71 72 2.686816 CGCTCGCCGTTTTTCCCAT 61.687 57.895 0.00 0.00 0.00 4.00
76 77 1.554160 TCGCCGTTTTTCCCATACCTA 59.446 47.619 0.00 0.00 0.00 3.08
97 98 7.039313 CCTAAATAGGTCAAATGGCTTAACC 57.961 40.000 0.00 0.00 38.69 2.85
98 99 5.576447 AAATAGGTCAAATGGCTTAACCG 57.424 39.130 0.00 0.00 43.94 4.44
143 145 1.760875 GCCTGTATCCGGGGAGACA 60.761 63.158 13.96 13.96 42.99 3.41
149 151 1.819903 GTATCCGGGGAGACATCTAGC 59.180 57.143 0.00 0.00 36.47 3.42
151 153 1.457643 CCGGGGAGACATCTAGCCA 60.458 63.158 0.00 0.00 0.00 4.75
156 158 2.042464 GGGAGACATCTAGCCATGACA 58.958 52.381 0.00 0.00 0.00 3.58
164 166 2.750814 TCTAGCCATGACATGTCTCCA 58.249 47.619 25.55 7.79 0.00 3.86
178 180 2.299013 TGTCTCCAACGATAGCTTGTGT 59.701 45.455 0.00 0.00 42.67 3.72
183 185 1.635663 AACGATAGCTTGTGTGGCGC 61.636 55.000 0.00 0.00 42.67 6.53
189 191 2.591429 CTTGTGTGGCGCTGGTCA 60.591 61.111 7.64 0.00 0.00 4.02
201 203 1.363744 GCTGGTCAAGATTCCGTCAG 58.636 55.000 0.00 0.00 0.00 3.51
203 205 0.036388 TGGTCAAGATTCCGTCAGGC 60.036 55.000 0.00 0.00 37.47 4.85
235 238 2.682136 TCGACGATCCCCAAGGCA 60.682 61.111 0.00 0.00 0.00 4.75
255 258 1.219522 GACGTGGTGGTCTTCAACGG 61.220 60.000 0.00 0.00 35.35 4.44
260 263 1.144093 TGGTGGTCTTCAACGGGATTT 59.856 47.619 0.00 0.00 35.35 2.17
262 265 2.500229 GTGGTCTTCAACGGGATTTCA 58.500 47.619 0.00 0.00 0.00 2.69
304 307 0.945813 GGGTGAGTCGACGGATCTAG 59.054 60.000 10.46 0.00 0.00 2.43
310 313 0.454600 GTCGACGGATCTAGGCACAA 59.545 55.000 0.00 0.00 0.00 3.33
312 315 0.456221 CGACGGATCTAGGCACAACT 59.544 55.000 0.00 0.00 0.00 3.16
318 321 2.171448 GGATCTAGGCACAACTGGATGT 59.829 50.000 0.00 0.00 38.58 3.06
342 345 2.825836 CTTGGAGATGGGGCGTGC 60.826 66.667 0.00 0.00 0.00 5.34
380 383 3.242518 CTTCGCGACATCAAAGTCACTA 58.757 45.455 9.15 0.00 38.43 2.74
394 408 7.907389 TCAAAGTCACTATAAGTTGTCTGGAT 58.093 34.615 0.00 0.00 0.00 3.41
396 410 6.227298 AGTCACTATAAGTTGTCTGGATGG 57.773 41.667 0.00 0.00 0.00 3.51
425 439 4.844349 AGTGGTTATTACTCAGCCATGT 57.156 40.909 0.00 0.00 0.00 3.21
445 459 3.519107 TGTGGAAGTCAGGAAGCATATGA 59.481 43.478 6.97 0.00 0.00 2.15
452 466 3.932710 GTCAGGAAGCATATGACGTTTGA 59.067 43.478 6.97 1.45 34.55 2.69
471 485 3.444657 GTGCAACTGCTGAAAGACG 57.555 52.632 2.95 0.00 42.66 4.18
472 486 0.040958 GTGCAACTGCTGAAAGACGG 60.041 55.000 2.95 0.00 42.66 4.79
473 487 0.463654 TGCAACTGCTGAAAGACGGT 60.464 50.000 2.95 0.00 42.66 4.83
474 488 1.202592 TGCAACTGCTGAAAGACGGTA 60.203 47.619 2.95 0.00 42.66 4.02
475 489 1.461127 GCAACTGCTGAAAGACGGTAG 59.539 52.381 0.00 0.00 42.08 3.18
476 490 1.461127 CAACTGCTGAAAGACGGTAGC 59.539 52.381 0.00 0.00 40.46 3.58
477 491 0.679505 ACTGCTGAAAGACGGTAGCA 59.320 50.000 0.00 2.85 43.26 3.49
478 492 1.071605 CTGCTGAAAGACGGTAGCAC 58.928 55.000 0.00 0.00 40.88 4.40
479 493 0.666274 TGCTGAAAGACGGTAGCACG 60.666 55.000 0.00 0.00 40.88 5.34
480 494 1.352156 GCTGAAAGACGGTAGCACGG 61.352 60.000 0.00 0.00 38.39 4.94
481 495 0.736325 CTGAAAGACGGTAGCACGGG 60.736 60.000 0.00 0.00 38.39 5.28
482 496 1.291272 GAAAGACGGTAGCACGGGT 59.709 57.895 0.00 0.00 38.39 5.28
483 497 0.527565 GAAAGACGGTAGCACGGGTA 59.472 55.000 0.00 0.00 38.39 3.69
484 498 0.244721 AAAGACGGTAGCACGGGTAC 59.755 55.000 5.11 5.11 38.39 3.34
485 499 0.895100 AAGACGGTAGCACGGGTACA 60.895 55.000 12.96 0.00 38.14 2.90
486 500 0.682209 AGACGGTAGCACGGGTACAT 60.682 55.000 12.96 3.47 38.14 2.29
487 501 0.526954 GACGGTAGCACGGGTACATG 60.527 60.000 12.96 0.00 38.14 3.21
488 502 1.881252 CGGTAGCACGGGTACATGC 60.881 63.158 12.96 7.68 41.51 4.06
489 503 1.219664 GGTAGCACGGGTACATGCA 59.780 57.895 15.72 0.00 43.29 3.96
490 504 0.179056 GGTAGCACGGGTACATGCAT 60.179 55.000 15.72 0.00 43.29 3.96
491 505 1.217882 GTAGCACGGGTACATGCATC 58.782 55.000 15.72 6.69 43.29 3.91
492 506 1.119684 TAGCACGGGTACATGCATCT 58.880 50.000 15.72 0.00 43.29 2.90
493 507 0.462581 AGCACGGGTACATGCATCTG 60.463 55.000 15.72 0.00 43.29 2.90
494 508 1.439353 GCACGGGTACATGCATCTGG 61.439 60.000 0.00 0.00 40.97 3.86
495 509 0.107703 CACGGGTACATGCATCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
496 510 0.618458 ACGGGTACATGCATCTGGTT 59.382 50.000 0.00 0.00 0.00 3.67
497 511 1.004277 ACGGGTACATGCATCTGGTTT 59.996 47.619 0.00 0.00 0.00 3.27
498 512 1.401552 CGGGTACATGCATCTGGTTTG 59.598 52.381 0.00 0.00 0.00 2.93
499 513 2.722094 GGGTACATGCATCTGGTTTGA 58.278 47.619 0.00 0.00 0.00 2.69
500 514 3.088532 GGGTACATGCATCTGGTTTGAA 58.911 45.455 0.00 0.00 0.00 2.69
501 515 3.701040 GGGTACATGCATCTGGTTTGAAT 59.299 43.478 0.00 0.00 0.00 2.57
502 516 4.440525 GGGTACATGCATCTGGTTTGAATG 60.441 45.833 0.00 0.00 36.38 2.67
503 517 3.241067 ACATGCATCTGGTTTGAATGC 57.759 42.857 0.00 0.00 34.02 3.56
504 518 2.093869 ACATGCATCTGGTTTGAATGCC 60.094 45.455 0.00 0.00 34.02 4.40
505 519 1.630223 TGCATCTGGTTTGAATGCCA 58.370 45.000 4.30 0.00 37.44 4.92
539 553 3.431766 GGATAGGTGTTTAGGCATCGTGT 60.432 47.826 0.00 0.00 0.00 4.49
541 555 1.084289 GGTGTTTAGGCATCGTGTCC 58.916 55.000 0.00 0.00 0.00 4.02
545 559 4.189231 GTGTTTAGGCATCGTGTCCTATT 58.811 43.478 0.00 0.00 35.11 1.73
554 568 2.070783 TCGTGTCCTATTTTTGCCGAC 58.929 47.619 0.00 0.00 0.00 4.79
555 569 1.201877 CGTGTCCTATTTTTGCCGACG 60.202 52.381 0.00 0.00 0.00 5.12
558 572 1.129811 GTCCTATTTTTGCCGACGGTG 59.870 52.381 16.73 0.00 0.00 4.94
567 581 2.126502 CCGACGGTGGCATTTTGC 60.127 61.111 5.48 0.00 44.08 3.68
570 584 1.003262 CGACGGTGGCATTTTGCTTG 61.003 55.000 0.00 0.00 44.28 4.01
571 585 0.313672 GACGGTGGCATTTTGCTTGA 59.686 50.000 0.00 0.00 44.28 3.02
572 586 0.968405 ACGGTGGCATTTTGCTTGAT 59.032 45.000 0.00 0.00 44.28 2.57
573 587 1.337074 ACGGTGGCATTTTGCTTGATG 60.337 47.619 0.00 0.00 44.28 3.07
574 588 1.067706 CGGTGGCATTTTGCTTGATGA 60.068 47.619 0.00 0.00 44.28 2.92
575 589 2.340337 GGTGGCATTTTGCTTGATGAC 58.660 47.619 0.00 0.00 44.28 3.06
576 590 2.028748 GGTGGCATTTTGCTTGATGACT 60.029 45.455 0.00 0.00 44.28 3.41
577 591 3.555586 GGTGGCATTTTGCTTGATGACTT 60.556 43.478 0.00 0.00 44.28 3.01
578 592 3.430895 GTGGCATTTTGCTTGATGACTTG 59.569 43.478 0.00 0.00 44.28 3.16
579 593 2.414138 GGCATTTTGCTTGATGACTTGC 59.586 45.455 0.00 0.00 44.28 4.01
580 594 3.061322 GCATTTTGCTTGATGACTTGCA 58.939 40.909 0.00 0.00 40.96 4.08
581 595 3.682858 GCATTTTGCTTGATGACTTGCAT 59.317 39.130 0.00 0.00 40.96 3.96
582 596 4.153475 GCATTTTGCTTGATGACTTGCATT 59.847 37.500 0.00 0.00 40.96 3.56
583 597 5.334569 GCATTTTGCTTGATGACTTGCATTT 60.335 36.000 0.00 0.00 40.96 2.32
584 598 5.660629 TTTTGCTTGATGACTTGCATTTG 57.339 34.783 0.00 0.00 37.34 2.32
585 599 2.679450 TGCTTGATGACTTGCATTTGC 58.321 42.857 0.00 0.00 37.34 3.68
586 600 2.297880 TGCTTGATGACTTGCATTTGCT 59.702 40.909 3.94 0.00 42.66 3.91
587 601 3.243941 TGCTTGATGACTTGCATTTGCTT 60.244 39.130 3.94 0.00 42.66 3.91
588 602 3.744426 GCTTGATGACTTGCATTTGCTTT 59.256 39.130 3.94 0.00 42.66 3.51
589 603 4.212636 GCTTGATGACTTGCATTTGCTTTT 59.787 37.500 3.94 0.00 42.66 2.27
590 604 5.406175 GCTTGATGACTTGCATTTGCTTTTA 59.594 36.000 3.94 0.00 42.66 1.52
591 605 6.091713 GCTTGATGACTTGCATTTGCTTTTAT 59.908 34.615 3.94 0.00 42.66 1.40
592 606 7.585286 TTGATGACTTGCATTTGCTTTTATC 57.415 32.000 3.94 3.14 42.66 1.75
601 615 5.927689 TGCATTTGCTTTTATCTTGAGTTGG 59.072 36.000 3.94 0.00 42.66 3.77
610 624 8.131731 GCTTTTATCTTGAGTTGGGATTCATAC 58.868 37.037 0.00 0.00 0.00 2.39
613 627 8.737168 TTATCTTGAGTTGGGATTCATACTTG 57.263 34.615 0.00 0.00 0.00 3.16
614 628 5.500234 TCTTGAGTTGGGATTCATACTTGG 58.500 41.667 0.00 0.00 0.00 3.61
616 630 4.843728 TGAGTTGGGATTCATACTTGGTC 58.156 43.478 0.00 0.00 0.00 4.02
623 637 4.021016 GGGATTCATACTTGGTCGCTCTAT 60.021 45.833 0.00 0.00 0.00 1.98
624 638 5.511545 GGGATTCATACTTGGTCGCTCTATT 60.512 44.000 0.00 0.00 0.00 1.73
625 639 5.992217 GGATTCATACTTGGTCGCTCTATTT 59.008 40.000 0.00 0.00 0.00 1.40
669 719 1.001974 ACCGCTTGATAACACAGCTCA 59.998 47.619 0.00 0.00 32.38 4.26
676 726 5.627499 TTGATAACACAGCTCATTGTTCC 57.373 39.130 7.91 3.97 37.19 3.62
683 733 4.757149 ACACAGCTCATTGTTCCTAACTTC 59.243 41.667 0.00 0.00 0.00 3.01
687 737 3.440522 GCTCATTGTTCCTAACTTCCACC 59.559 47.826 0.00 0.00 0.00 4.61
699 749 1.974236 ACTTCCACCTCACTCTTCCAG 59.026 52.381 0.00 0.00 0.00 3.86
701 751 2.992847 TCCACCTCACTCTTCCAGTA 57.007 50.000 0.00 0.00 32.21 2.74
703 753 3.791320 TCCACCTCACTCTTCCAGTATT 58.209 45.455 0.00 0.00 32.21 1.89
704 754 4.942944 TCCACCTCACTCTTCCAGTATTA 58.057 43.478 0.00 0.00 32.21 0.98
705 755 5.338632 TCCACCTCACTCTTCCAGTATTAA 58.661 41.667 0.00 0.00 32.21 1.40
706 756 5.783360 TCCACCTCACTCTTCCAGTATTAAA 59.217 40.000 0.00 0.00 32.21 1.52
735 787 9.503399 AAGAATGTACCCGAAGAAATTATATCC 57.497 33.333 0.00 0.00 0.00 2.59
760 812 2.292794 GACCGCAGCGTGATAAGGGA 62.293 60.000 15.05 0.00 0.00 4.20
769 821 4.097437 CAGCGTGATAAGGGAGTAGTACAA 59.903 45.833 2.52 0.00 0.00 2.41
938 993 2.234300 TTGACGAGCCTTTTCTTCGT 57.766 45.000 0.00 0.00 39.86 3.85
994 1069 1.388837 GCCTTCCCAAACACACCGTT 61.389 55.000 0.00 0.00 40.50 4.44
1069 1151 2.109181 GTGTAGCCATCGCCTCCC 59.891 66.667 0.00 0.00 34.57 4.30
1095 1177 5.754782 TCCTCAAATCTTTGGCTAGCATTA 58.245 37.500 18.24 0.00 38.66 1.90
1158 1240 1.986882 AGGCCTTCTCAGGTTTGTTG 58.013 50.000 0.00 0.00 43.18 3.33
1159 1241 1.494721 AGGCCTTCTCAGGTTTGTTGA 59.505 47.619 0.00 0.00 43.18 3.18
1172 1254 6.035650 TCAGGTTTGTTGAATCGATAATCGTC 59.964 38.462 0.00 0.00 41.35 4.20
1182 1264 3.324117 TCGATAATCGTCGACTCCTAGG 58.676 50.000 14.70 0.82 44.87 3.02
1183 1265 3.006217 TCGATAATCGTCGACTCCTAGGA 59.994 47.826 11.98 11.98 44.87 2.94
1184 1266 3.368539 CGATAATCGTCGACTCCTAGGAG 59.631 52.174 33.24 33.24 44.06 3.69
1199 1281 1.489481 AGGAGGAGATTGTGCATCGA 58.511 50.000 0.00 0.00 36.93 3.59
1214 1296 3.506067 TGCATCGATCATACTCGTACCAT 59.494 43.478 0.00 0.00 39.62 3.55
1217 1299 3.897325 TCGATCATACTCGTACCATTGC 58.103 45.455 0.00 0.00 39.62 3.56
1223 1305 0.515564 ACTCGTACCATTGCGTTTGC 59.484 50.000 0.00 0.00 43.20 3.68
1224 1306 0.796312 CTCGTACCATTGCGTTTGCT 59.204 50.000 0.00 0.00 43.34 3.91
1237 1319 2.401720 GCGTTTGCTTGATCGTTTCTTG 59.598 45.455 0.00 0.00 38.39 3.02
1250 1332 3.926527 TCGTTTCTTGGAGTTGATCGATG 59.073 43.478 0.54 0.00 0.00 3.84
1576 1658 3.822192 CCGCCATCGTCGTGGAGA 61.822 66.667 15.29 0.00 41.02 3.71
1717 1799 5.560966 CGTAAGCTCTCTCTCTCTTTCTT 57.439 43.478 0.00 0.00 0.00 2.52
1719 1801 6.027749 CGTAAGCTCTCTCTCTCTTTCTTTC 58.972 44.000 0.00 0.00 0.00 2.62
1720 1802 4.701956 AGCTCTCTCTCTCTTTCTTTCG 57.298 45.455 0.00 0.00 0.00 3.46
1721 1803 3.443681 AGCTCTCTCTCTCTTTCTTTCGG 59.556 47.826 0.00 0.00 0.00 4.30
1722 1804 3.769536 CTCTCTCTCTCTTTCTTTCGGC 58.230 50.000 0.00 0.00 0.00 5.54
1724 1806 3.192422 TCTCTCTCTCTTTCTTTCGGCTG 59.808 47.826 0.00 0.00 0.00 4.85
1725 1807 3.157881 TCTCTCTCTTTCTTTCGGCTGA 58.842 45.455 0.00 0.00 0.00 4.26
1726 1808 3.057174 TCTCTCTCTTTCTTTCGGCTGAC 60.057 47.826 0.00 0.00 0.00 3.51
1727 1809 1.989165 CTCTCTTTCTTTCGGCTGACG 59.011 52.381 0.00 0.00 46.11 4.35
1743 1825 1.000145 GACGATGGCGGTTCTTCTTC 59.000 55.000 0.00 0.00 43.17 2.87
1744 1826 0.736325 ACGATGGCGGTTCTTCTTCG 60.736 55.000 0.00 0.00 43.17 3.79
1786 1878 3.381045 GTCGAGTCTGATGTGTTTGTGA 58.619 45.455 0.00 0.00 0.00 3.58
1824 1916 4.111016 CTGGTGAGCGCGTACCGA 62.111 66.667 24.39 15.53 39.87 4.69
2021 2113 1.078848 GCAAGCACATCGAGGAGGT 60.079 57.895 3.06 0.00 0.00 3.85
2022 2114 0.175760 GCAAGCACATCGAGGAGGTA 59.824 55.000 3.06 0.00 0.00 3.08
2023 2115 1.405526 GCAAGCACATCGAGGAGGTAA 60.406 52.381 3.06 0.00 0.00 2.85
2025 2117 3.492656 GCAAGCACATCGAGGAGGTAATA 60.493 47.826 3.06 0.00 0.00 0.98
2026 2118 4.693283 CAAGCACATCGAGGAGGTAATAA 58.307 43.478 3.06 0.00 0.00 1.40
2027 2119 4.323553 AGCACATCGAGGAGGTAATAAC 57.676 45.455 3.06 0.00 0.00 1.89
2028 2120 3.050619 GCACATCGAGGAGGTAATAACG 58.949 50.000 3.06 0.00 0.00 3.18
2029 2121 3.050619 CACATCGAGGAGGTAATAACGC 58.949 50.000 3.06 0.00 0.00 4.84
2030 2122 2.035576 ACATCGAGGAGGTAATAACGCC 59.964 50.000 3.06 0.00 0.00 5.68
2031 2123 0.664761 TCGAGGAGGTAATAACGCCG 59.335 55.000 0.00 0.00 0.00 6.46
2032 2124 0.938168 CGAGGAGGTAATAACGCCGC 60.938 60.000 0.00 0.00 0.00 6.53
2033 2125 0.938168 GAGGAGGTAATAACGCCGCG 60.938 60.000 12.14 12.14 0.00 6.46
2034 2126 1.066257 GGAGGTAATAACGCCGCGA 59.934 57.895 21.79 0.00 0.00 5.87
2035 2127 0.319297 GGAGGTAATAACGCCGCGAT 60.319 55.000 21.79 10.82 0.00 4.58
2036 2128 1.058404 GAGGTAATAACGCCGCGATC 58.942 55.000 21.79 0.00 0.00 3.69
2037 2129 0.386476 AGGTAATAACGCCGCGATCA 59.614 50.000 21.79 3.88 0.00 2.92
2038 2130 0.505655 GGTAATAACGCCGCGATCAC 59.494 55.000 21.79 9.18 0.00 3.06
2039 2131 0.158096 GTAATAACGCCGCGATCACG 59.842 55.000 21.79 8.59 42.93 4.35
2049 2141 2.097728 CGATCACGCTGACGACGA 59.902 61.111 0.00 0.00 43.93 4.20
2050 2142 1.297672 CGATCACGCTGACGACGAT 60.298 57.895 0.00 0.00 43.93 3.73
2051 2143 1.524179 CGATCACGCTGACGACGATG 61.524 60.000 0.00 0.00 43.93 3.84
2052 2144 1.802300 GATCACGCTGACGACGATGC 61.802 60.000 0.00 1.50 43.93 3.91
2053 2145 2.542211 ATCACGCTGACGACGATGCA 62.542 55.000 0.00 0.00 43.93 3.96
2054 2146 2.504899 ACGCTGACGACGATGCAG 60.505 61.111 0.00 7.28 43.93 4.41
2055 2147 2.202479 CGCTGACGACGATGCAGA 60.202 61.111 16.84 0.00 43.93 4.26
2056 2148 2.500442 CGCTGACGACGATGCAGAC 61.500 63.158 16.84 9.66 43.93 3.51
2057 2149 1.153939 GCTGACGACGATGCAGACT 60.154 57.895 16.84 0.00 0.00 3.24
2058 2150 1.136872 GCTGACGACGATGCAGACTC 61.137 60.000 16.84 0.00 0.00 3.36
2059 2151 0.449786 CTGACGACGATGCAGACTCT 59.550 55.000 0.00 0.00 0.00 3.24
2060 2152 0.169009 TGACGACGATGCAGACTCTG 59.831 55.000 0.00 1.21 34.12 3.35
2061 2153 0.169230 GACGACGATGCAGACTCTGT 59.831 55.000 0.00 0.00 33.43 3.41
2062 2154 1.397343 GACGACGATGCAGACTCTGTA 59.603 52.381 0.00 3.52 33.43 2.74
2063 2155 1.810755 ACGACGATGCAGACTCTGTAA 59.189 47.619 0.00 0.00 33.43 2.41
2064 2156 2.423892 ACGACGATGCAGACTCTGTAAT 59.576 45.455 0.00 2.48 33.43 1.89
2065 2157 2.786027 CGACGATGCAGACTCTGTAATG 59.214 50.000 7.89 3.23 33.43 1.90
2066 2158 3.487544 CGACGATGCAGACTCTGTAATGA 60.488 47.826 7.89 0.00 33.43 2.57
2067 2159 4.039151 ACGATGCAGACTCTGTAATGAG 57.961 45.455 7.89 0.00 39.78 2.90
2068 2160 3.181482 ACGATGCAGACTCTGTAATGAGG 60.181 47.826 7.89 0.00 38.32 3.86
2069 2161 3.067320 CGATGCAGACTCTGTAATGAGGA 59.933 47.826 7.89 0.00 38.32 3.71
2070 2162 4.619973 GATGCAGACTCTGTAATGAGGAG 58.380 47.826 7.89 0.00 38.32 3.69
2071 2163 3.435275 TGCAGACTCTGTAATGAGGAGT 58.565 45.455 7.89 0.00 42.15 3.85
2072 2164 3.834813 TGCAGACTCTGTAATGAGGAGTT 59.165 43.478 7.89 0.00 39.95 3.01
2073 2165 5.016831 TGCAGACTCTGTAATGAGGAGTTA 58.983 41.667 7.89 0.00 39.95 2.24
2074 2166 5.658634 TGCAGACTCTGTAATGAGGAGTTAT 59.341 40.000 7.89 0.00 39.95 1.89
2075 2167 6.155221 TGCAGACTCTGTAATGAGGAGTTATT 59.845 38.462 7.89 0.00 39.95 1.40
2076 2168 6.478344 GCAGACTCTGTAATGAGGAGTTATTG 59.522 42.308 7.89 0.00 39.95 1.90
2077 2169 7.631594 GCAGACTCTGTAATGAGGAGTTATTGA 60.632 40.741 7.89 0.00 39.95 2.57
2078 2170 8.420222 CAGACTCTGTAATGAGGAGTTATTGAT 58.580 37.037 0.00 0.00 39.95 2.57
2079 2171 8.637986 AGACTCTGTAATGAGGAGTTATTGATC 58.362 37.037 0.00 0.00 39.95 2.92
2080 2172 8.311395 ACTCTGTAATGAGGAGTTATTGATCA 57.689 34.615 0.00 0.00 37.04 2.92
2081 2173 8.762645 ACTCTGTAATGAGGAGTTATTGATCAA 58.237 33.333 11.26 11.26 37.04 2.57
2082 2174 9.775854 CTCTGTAATGAGGAGTTATTGATCAAT 57.224 33.333 23.75 23.75 34.93 2.57
2085 2177 9.685276 TGTAATGAGGAGTTATTGATCAATTGT 57.315 29.630 25.26 10.87 32.50 2.71
2088 2180 7.854557 TGAGGAGTTATTGATCAATTGTCTG 57.145 36.000 25.26 0.00 32.50 3.51
2089 2181 7.397221 TGAGGAGTTATTGATCAATTGTCTGT 58.603 34.615 25.26 7.81 32.50 3.41
2090 2182 7.550551 TGAGGAGTTATTGATCAATTGTCTGTC 59.449 37.037 25.26 15.55 32.50 3.51
2091 2183 7.397221 AGGAGTTATTGATCAATTGTCTGTCA 58.603 34.615 25.26 2.75 32.50 3.58
2092 2184 7.884877 AGGAGTTATTGATCAATTGTCTGTCAA 59.115 33.333 25.26 8.84 40.53 3.18
2093 2185 8.514594 GGAGTTATTGATCAATTGTCTGTCAAA 58.485 33.333 25.26 8.15 39.62 2.69
2094 2186 9.897744 GAGTTATTGATCAATTGTCTGTCAAAA 57.102 29.630 25.26 7.46 39.62 2.44
2098 2190 8.945481 ATTGATCAATTGTCTGTCAAAAACAA 57.055 26.923 15.36 0.00 39.62 2.83
2099 2191 8.768957 TTGATCAATTGTCTGTCAAAAACAAA 57.231 26.923 3.38 0.00 39.62 2.83
2100 2192 8.768957 TGATCAATTGTCTGTCAAAAACAAAA 57.231 26.923 5.13 0.00 39.62 2.44
2101 2193 8.655092 TGATCAATTGTCTGTCAAAAACAAAAC 58.345 29.630 5.13 0.00 39.62 2.43
2102 2194 7.043454 TCAATTGTCTGTCAAAAACAAAACG 57.957 32.000 5.13 0.00 39.62 3.60
2103 2195 4.894798 TTGTCTGTCAAAAACAAAACGC 57.105 36.364 0.00 0.00 37.45 4.84
2136 2228 1.618030 GAGGAGGCTCTGAGGGAGA 59.382 63.158 15.23 0.00 44.45 3.71
2232 2324 4.658786 ACGGGAAGGAGGCCCTGT 62.659 66.667 0.00 0.00 43.48 4.00
2277 2369 1.078497 GTGGACATGGACGGCATCA 60.078 57.895 0.00 0.00 0.00 3.07
2392 2484 3.450578 TCGTCGGCAAGTAAACCATATC 58.549 45.455 0.00 0.00 0.00 1.63
2393 2485 2.542595 CGTCGGCAAGTAAACCATATCC 59.457 50.000 0.00 0.00 0.00 2.59
2394 2486 2.542595 GTCGGCAAGTAAACCATATCCG 59.457 50.000 0.00 0.00 37.21 4.18
2395 2487 1.871039 CGGCAAGTAAACCATATCCGG 59.129 52.381 0.00 0.00 32.75 5.14
2397 2489 3.139077 GGCAAGTAAACCATATCCGGAG 58.861 50.000 11.34 0.00 0.00 4.63
2411 2525 1.218316 CGGAGGGGGTTCTTCTTCG 59.782 63.158 0.00 0.00 0.00 3.79
2418 2532 1.346722 GGGGTTCTTCTTCGTCTTCCA 59.653 52.381 0.00 0.00 0.00 3.53
2423 2537 2.317040 TCTTCTTCGTCTTCCAGTGGT 58.683 47.619 9.54 0.00 0.00 4.16
2460 2574 1.202245 TGCGTGTGTTTTTCTTCCTGC 60.202 47.619 0.00 0.00 0.00 4.85
2482 2596 1.372997 ATCTCGTGTCGTGTGTGCC 60.373 57.895 0.00 0.00 0.00 5.01
2568 3066 5.506317 GCTGATCGGGGATCAAATAAAGTTG 60.506 44.000 9.36 0.00 46.51 3.16
2578 3076 7.334171 GGGATCAAATAAAGTTGAACATTTGGG 59.666 37.037 15.25 0.00 40.76 4.12
2588 3086 5.532779 AGTTGAACATTTGGGTCTTTCTCTC 59.467 40.000 0.00 0.00 0.00 3.20
2645 3144 4.729918 CAGTGCCAGGCCACTCCC 62.730 72.222 9.64 0.00 43.85 4.30
2748 3269 5.935789 GGCCTTTCCCTAAAAATTTGTAACC 59.064 40.000 0.00 0.00 0.00 2.85
2766 3287 7.922505 TGTAACCGACAAAAGATTGAAAATG 57.077 32.000 0.00 0.00 38.94 2.32
2792 3320 7.119262 GTCACTTTAGCTAGTTGCCTGATTTTA 59.881 37.037 0.00 0.00 44.23 1.52
2805 3333 9.008965 GTTGCCTGATTTTAAAATTTGGGTAAT 57.991 29.630 23.01 1.39 0.00 1.89
2846 3388 5.471797 TGATTCTTTTGCCAAGATTCGTGTA 59.528 36.000 10.65 0.00 32.33 2.90
2847 3389 5.759506 TTCTTTTGCCAAGATTCGTGTAA 57.240 34.783 0.00 0.00 0.00 2.41
2849 3391 6.325919 TCTTTTGCCAAGATTCGTGTAAAT 57.674 33.333 0.00 0.00 0.00 1.40
2852 3394 6.761731 TTTGCCAAGATTCGTGTAAATTTG 57.238 33.333 0.00 0.00 0.00 2.32
2856 3398 5.569059 GCCAAGATTCGTGTAAATTTGTCTG 59.431 40.000 0.00 0.00 0.00 3.51
2869 3411 5.437289 AATTTGTCTGCACGAATTTCTGA 57.563 34.783 0.00 0.00 42.00 3.27
2870 3412 3.878086 TTGTCTGCACGAATTTCTGAC 57.122 42.857 0.00 0.00 0.00 3.51
2871 3413 2.143122 TGTCTGCACGAATTTCTGACC 58.857 47.619 0.00 0.00 0.00 4.02
2872 3414 2.143122 GTCTGCACGAATTTCTGACCA 58.857 47.619 0.00 0.00 0.00 4.02
2873 3415 2.744202 GTCTGCACGAATTTCTGACCAT 59.256 45.455 0.00 0.00 0.00 3.55
2874 3416 3.189287 GTCTGCACGAATTTCTGACCATT 59.811 43.478 0.00 0.00 0.00 3.16
2875 3417 3.189080 TCTGCACGAATTTCTGACCATTG 59.811 43.478 0.00 0.00 0.00 2.82
2876 3418 3.145286 TGCACGAATTTCTGACCATTGA 58.855 40.909 0.00 0.00 0.00 2.57
2880 3422 5.702865 CACGAATTTCTGACCATTGATTGT 58.297 37.500 0.00 0.00 0.00 2.71
2881 3423 5.796935 CACGAATTTCTGACCATTGATTGTC 59.203 40.000 0.00 0.00 0.00 3.18
2884 3429 6.525628 CGAATTTCTGACCATTGATTGTCTTG 59.474 38.462 0.00 0.00 32.67 3.02
2899 3444 9.506018 TTGATTGTCTTGAGAAGATGTTGAATA 57.494 29.630 0.00 0.00 40.18 1.75
2980 3527 7.041780 TGCTCACTGTCTGTTTTTCTTCTATTC 60.042 37.037 0.00 0.00 0.00 1.75
2988 3535 4.271533 TGTTTTTCTTCTATTCGTGTGCGT 59.728 37.500 0.00 0.00 39.49 5.24
2989 3536 5.202640 GTTTTTCTTCTATTCGTGTGCGTT 58.797 37.500 0.00 0.00 39.49 4.84
2990 3537 5.412526 TTTTCTTCTATTCGTGTGCGTTT 57.587 34.783 0.00 0.00 39.49 3.60
2991 3538 5.412526 TTTCTTCTATTCGTGTGCGTTTT 57.587 34.783 0.00 0.00 39.49 2.43
2992 3539 5.412526 TTCTTCTATTCGTGTGCGTTTTT 57.587 34.783 0.00 0.00 39.49 1.94
3056 3615 9.529823 AATATATGGGTATTCTCAAGACGAGTA 57.470 33.333 0.00 0.00 42.88 2.59
3067 3626 7.210718 TCTCAAGACGAGTAAGTGTAAATGA 57.789 36.000 0.00 0.00 42.88 2.57
3071 3630 9.350357 TCAAGACGAGTAAGTGTAAATGAATAC 57.650 33.333 0.00 0.00 0.00 1.89
3074 3633 9.701098 AGACGAGTAAGTGTAAATGAATACAAA 57.299 29.630 0.00 0.00 37.52 2.83
3114 3673 7.592885 ATGTATGTAAGTTATACCGGAGTGT 57.407 36.000 9.46 0.00 31.53 3.55
3115 3674 8.696043 ATGTATGTAAGTTATACCGGAGTGTA 57.304 34.615 9.46 0.00 31.53 2.90
3116 3675 8.518430 TGTATGTAAGTTATACCGGAGTGTAA 57.482 34.615 9.46 0.00 31.53 2.41
3117 3676 8.965819 TGTATGTAAGTTATACCGGAGTGTAAA 58.034 33.333 9.46 0.00 32.18 2.01
3118 3677 9.801873 GTATGTAAGTTATACCGGAGTGTAAAA 57.198 33.333 9.46 0.00 32.18 1.52
3120 3679 9.895138 ATGTAAGTTATACCGGAGTGTAAAAAT 57.105 29.630 9.46 0.00 32.18 1.82
3121 3680 9.723601 TGTAAGTTATACCGGAGTGTAAAAATT 57.276 29.630 9.46 0.64 32.18 1.82
3122 3681 9.977762 GTAAGTTATACCGGAGTGTAAAAATTG 57.022 33.333 9.46 0.00 32.18 2.32
3123 3682 7.080353 AGTTATACCGGAGTGTAAAAATTGC 57.920 36.000 9.46 0.00 32.18 3.56
3124 3683 6.655848 AGTTATACCGGAGTGTAAAAATTGCA 59.344 34.615 9.46 0.00 32.18 4.08
3125 3684 3.636282 ACCGGAGTGTAAAAATTGCAC 57.364 42.857 9.46 3.53 45.13 4.57
3163 3722 5.506686 TTGTGCATACTACAAAAAGTGCA 57.493 34.783 0.00 0.00 35.29 4.57
3164 3723 5.506686 TGTGCATACTACAAAAAGTGCAA 57.493 34.783 0.00 0.00 32.25 4.08
3165 3724 6.083098 TGTGCATACTACAAAAAGTGCAAT 57.917 33.333 0.00 0.00 32.25 3.56
3166 3725 6.511416 TGTGCATACTACAAAAAGTGCAATT 58.489 32.000 0.00 0.00 32.25 2.32
3167 3726 6.983307 TGTGCATACTACAAAAAGTGCAATTT 59.017 30.769 6.26 6.26 32.25 1.82
3168 3727 7.493971 TGTGCATACTACAAAAAGTGCAATTTT 59.506 29.630 18.47 18.47 32.25 1.82
3169 3728 8.973378 GTGCATACTACAAAAAGTGCAATTTTA 58.027 29.630 23.56 8.79 32.25 1.52
3170 3729 9.190858 TGCATACTACAAAAAGTGCAATTTTAG 57.809 29.630 23.56 19.02 32.20 1.85
3171 3730 9.191995 GCATACTACAAAAAGTGCAATTTTAGT 57.808 29.630 23.56 22.91 32.20 2.24
3173 3732 7.463469 ACTACAAAAAGTGCAATTTTAGTGC 57.537 32.000 23.56 0.00 42.55 4.40
3182 3741 4.713854 GCAATTTTAGTGCAAGGTTGTG 57.286 40.909 0.00 0.00 41.80 3.33
3183 3742 3.059665 GCAATTTTAGTGCAAGGTTGTGC 60.060 43.478 0.00 0.00 45.15 4.57
3194 3753 5.671742 GCAAGGTTGTGCACATTTTTATT 57.328 34.783 22.39 7.34 44.29 1.40
3195 3754 6.777526 GCAAGGTTGTGCACATTTTTATTA 57.222 33.333 22.39 0.00 44.29 0.98
3196 3755 7.363205 GCAAGGTTGTGCACATTTTTATTAT 57.637 32.000 22.39 0.00 44.29 1.28
3197 3756 7.805700 GCAAGGTTGTGCACATTTTTATTATT 58.194 30.769 22.39 3.12 44.29 1.40
3198 3757 8.288913 GCAAGGTTGTGCACATTTTTATTATTT 58.711 29.630 22.39 0.00 44.29 1.40
3199 3758 9.810231 CAAGGTTGTGCACATTTTTATTATTTC 57.190 29.630 22.39 0.00 0.00 2.17
3200 3759 9.777297 AAGGTTGTGCACATTTTTATTATTTCT 57.223 25.926 22.39 0.11 0.00 2.52
3201 3760 9.777297 AGGTTGTGCACATTTTTATTATTTCTT 57.223 25.926 22.39 0.00 0.00 2.52
3307 3866 7.812690 TTCTTTCTTCTTTAAGGTAACACCC 57.187 36.000 0.00 0.00 39.75 4.61
3308 3867 6.902408 TCTTTCTTCTTTAAGGTAACACCCA 58.098 36.000 0.00 0.00 39.75 4.51
3309 3868 7.523415 TCTTTCTTCTTTAAGGTAACACCCAT 58.477 34.615 0.00 0.00 39.75 4.00
3310 3869 7.447238 TCTTTCTTCTTTAAGGTAACACCCATG 59.553 37.037 0.00 0.00 39.75 3.66
3311 3870 5.007682 TCTTCTTTAAGGTAACACCCATGC 58.992 41.667 0.00 0.00 39.75 4.06
3312 3871 3.692690 TCTTTAAGGTAACACCCATGCC 58.307 45.455 0.00 0.00 39.75 4.40
3313 3872 3.074687 TCTTTAAGGTAACACCCATGCCA 59.925 43.478 0.00 0.00 39.75 4.92
3314 3873 2.500392 TAAGGTAACACCCATGCCAC 57.500 50.000 0.00 0.00 39.75 5.01
3315 3874 0.777446 AAGGTAACACCCATGCCACT 59.223 50.000 0.00 0.00 39.75 4.00
3316 3875 1.663911 AGGTAACACCCATGCCACTA 58.336 50.000 0.00 0.00 39.75 2.74
3317 3876 1.989586 AGGTAACACCCATGCCACTAA 59.010 47.619 0.00 0.00 39.75 2.24
3318 3877 2.580783 AGGTAACACCCATGCCACTAAT 59.419 45.455 0.00 0.00 39.75 1.73
3319 3878 3.011257 AGGTAACACCCATGCCACTAATT 59.989 43.478 0.00 0.00 39.75 1.40
3320 3879 4.228666 AGGTAACACCCATGCCACTAATTA 59.771 41.667 0.00 0.00 39.75 1.40
3321 3880 4.578928 GGTAACACCCATGCCACTAATTAG 59.421 45.833 11.05 11.05 30.04 1.73
3322 3881 4.316025 AACACCCATGCCACTAATTAGT 57.684 40.909 12.50 12.50 36.90 2.24
3323 3882 4.316025 ACACCCATGCCACTAATTAGTT 57.684 40.909 15.60 0.00 33.46 2.24
3324 3883 4.270008 ACACCCATGCCACTAATTAGTTC 58.730 43.478 15.60 10.81 33.46 3.01
3325 3884 3.632145 CACCCATGCCACTAATTAGTTCC 59.368 47.826 15.60 9.84 33.46 3.62
3326 3885 3.527665 ACCCATGCCACTAATTAGTTCCT 59.472 43.478 15.60 1.66 33.46 3.36
3327 3886 4.017499 ACCCATGCCACTAATTAGTTCCTT 60.017 41.667 15.60 5.36 33.46 3.36
3328 3887 4.580580 CCCATGCCACTAATTAGTTCCTTC 59.419 45.833 15.60 4.34 33.46 3.46
3329 3888 5.440610 CCATGCCACTAATTAGTTCCTTCT 58.559 41.667 15.60 0.00 33.46 2.85
3330 3889 5.888161 CCATGCCACTAATTAGTTCCTTCTT 59.112 40.000 15.60 0.13 33.46 2.52
3331 3890 7.054124 CCATGCCACTAATTAGTTCCTTCTTA 58.946 38.462 15.60 0.00 33.46 2.10
3332 3891 7.227512 CCATGCCACTAATTAGTTCCTTCTTAG 59.772 40.741 15.60 1.54 33.46 2.18
3333 3892 7.490657 TGCCACTAATTAGTTCCTTCTTAGA 57.509 36.000 15.60 0.00 33.46 2.10
3334 3893 8.090788 TGCCACTAATTAGTTCCTTCTTAGAT 57.909 34.615 15.60 0.00 33.46 1.98
3335 3894 8.548877 TGCCACTAATTAGTTCCTTCTTAGATT 58.451 33.333 15.60 0.00 33.46 2.40
3336 3895 9.047371 GCCACTAATTAGTTCCTTCTTAGATTC 57.953 37.037 15.60 0.00 33.46 2.52
3337 3896 9.549078 CCACTAATTAGTTCCTTCTTAGATTCC 57.451 37.037 15.60 0.00 33.46 3.01
3344 3903 7.987750 AGTTCCTTCTTAGATTCCTTTTCAC 57.012 36.000 0.00 0.00 0.00 3.18
3345 3904 7.518188 AGTTCCTTCTTAGATTCCTTTTCACA 58.482 34.615 0.00 0.00 0.00 3.58
3346 3905 7.998964 AGTTCCTTCTTAGATTCCTTTTCACAA 59.001 33.333 0.00 0.00 0.00 3.33
3347 3906 8.630037 GTTCCTTCTTAGATTCCTTTTCACAAA 58.370 33.333 0.00 0.00 0.00 2.83
3348 3907 8.760980 TCCTTCTTAGATTCCTTTTCACAAAA 57.239 30.769 0.00 0.00 0.00 2.44
3349 3908 9.196139 TCCTTCTTAGATTCCTTTTCACAAAAA 57.804 29.630 0.00 0.00 33.42 1.94
3375 3934 9.436957 AAATCCACTATTATACGCTTATCCTTG 57.563 33.333 0.00 0.00 0.00 3.61
3376 3935 6.395629 TCCACTATTATACGCTTATCCTTGC 58.604 40.000 0.00 0.00 0.00 4.01
3377 3936 6.014925 TCCACTATTATACGCTTATCCTTGCA 60.015 38.462 0.00 0.00 0.00 4.08
3378 3937 6.818644 CCACTATTATACGCTTATCCTTGCAT 59.181 38.462 0.00 0.00 0.00 3.96
3379 3938 7.979537 CCACTATTATACGCTTATCCTTGCATA 59.020 37.037 0.00 0.00 0.00 3.14
3380 3939 9.534565 CACTATTATACGCTTATCCTTGCATAT 57.465 33.333 0.00 0.00 0.00 1.78
3387 3946 7.744087 ACGCTTATCCTTGCATATTATGAAA 57.256 32.000 7.87 2.42 0.00 2.69
3388 3947 8.165239 ACGCTTATCCTTGCATATTATGAAAA 57.835 30.769 7.87 0.85 0.00 2.29
3389 3948 8.629158 ACGCTTATCCTTGCATATTATGAAAAA 58.371 29.630 7.87 0.00 0.00 1.94
3467 4026 7.412853 TTTCTTAAAGGGTAATACCAATGCC 57.587 36.000 12.03 0.00 41.02 4.40
3468 4027 6.080969 TCTTAAAGGGTAATACCAATGCCA 57.919 37.500 12.03 0.00 41.02 4.92
3469 4028 5.889289 TCTTAAAGGGTAATACCAATGCCAC 59.111 40.000 12.03 0.00 41.02 5.01
3470 4029 4.331159 AAAGGGTAATACCAATGCCACT 57.669 40.909 12.03 0.00 41.02 4.00
3471 4030 5.459982 AAAGGGTAATACCAATGCCACTA 57.540 39.130 12.03 0.00 41.02 2.74
3472 4031 5.459982 AAGGGTAATACCAATGCCACTAA 57.540 39.130 12.03 0.00 41.02 2.24
3473 4032 5.663158 AGGGTAATACCAATGCCACTAAT 57.337 39.130 12.03 0.00 41.02 1.73
3474 4033 6.025793 AGGGTAATACCAATGCCACTAATT 57.974 37.500 12.03 0.00 41.02 1.40
3475 4034 6.440354 AGGGTAATACCAATGCCACTAATTT 58.560 36.000 12.03 0.00 41.02 1.82
3476 4035 7.588169 AGGGTAATACCAATGCCACTAATTTA 58.412 34.615 12.03 0.00 41.02 1.40
3477 4036 8.231709 AGGGTAATACCAATGCCACTAATTTAT 58.768 33.333 12.03 0.00 41.02 1.40
3478 4037 8.866093 GGGTAATACCAATGCCACTAATTTATT 58.134 33.333 12.03 0.00 41.02 1.40
3566 4125 9.480053 TCATTTCATTTTCTTTCTGCTTTAAGG 57.520 29.630 0.00 0.00 0.00 2.69
3567 4126 9.264719 CATTTCATTTTCTTTCTGCTTTAAGGT 57.735 29.630 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.513515 TGGAGTGAAAAGTGGCAAAACTT 59.486 39.130 0.00 0.00 42.21 2.66
6 7 3.096092 TGGAGTGAAAAGTGGCAAAACT 58.904 40.909 0.00 0.00 0.00 2.66
7 8 3.518634 TGGAGTGAAAAGTGGCAAAAC 57.481 42.857 0.00 0.00 0.00 2.43
8 9 4.751767 ATTGGAGTGAAAAGTGGCAAAA 57.248 36.364 0.00 0.00 0.00 2.44
9 10 4.751767 AATTGGAGTGAAAAGTGGCAAA 57.248 36.364 0.00 0.00 0.00 3.68
10 11 4.892934 ACTAATTGGAGTGAAAAGTGGCAA 59.107 37.500 0.00 0.00 0.00 4.52
11 12 4.469657 ACTAATTGGAGTGAAAAGTGGCA 58.530 39.130 0.00 0.00 0.00 4.92
12 13 4.518970 TGACTAATTGGAGTGAAAAGTGGC 59.481 41.667 0.00 0.00 0.00 5.01
13 14 6.824305 ATGACTAATTGGAGTGAAAAGTGG 57.176 37.500 0.00 0.00 0.00 4.00
14 15 9.533253 AAAAATGACTAATTGGAGTGAAAAGTG 57.467 29.630 0.00 0.00 0.00 3.16
37 38 0.533308 AGCGTACCTGGCACGAAAAA 60.533 50.000 22.96 0.00 41.91 1.94
38 39 0.947180 GAGCGTACCTGGCACGAAAA 60.947 55.000 22.96 0.00 41.91 2.29
39 40 1.373748 GAGCGTACCTGGCACGAAA 60.374 57.895 22.96 0.00 41.91 3.46
40 41 2.260434 GAGCGTACCTGGCACGAA 59.740 61.111 22.96 0.00 41.91 3.85
41 42 4.111016 CGAGCGTACCTGGCACGA 62.111 66.667 22.96 0.00 45.24 4.35
46 47 3.927163 AAACGGCGAGCGTACCTGG 62.927 63.158 16.62 0.00 0.00 4.45
47 48 1.562575 AAAAACGGCGAGCGTACCTG 61.563 55.000 16.62 0.00 0.00 4.00
48 49 1.287041 GAAAAACGGCGAGCGTACCT 61.287 55.000 16.62 0.00 0.00 3.08
49 50 1.131218 GAAAAACGGCGAGCGTACC 59.869 57.895 16.62 0.00 0.00 3.34
50 51 1.131218 GGAAAAACGGCGAGCGTAC 59.869 57.895 16.62 0.00 0.00 3.67
51 52 2.028733 GGGAAAAACGGCGAGCGTA 61.029 57.895 16.62 0.00 0.00 4.42
52 53 3.351416 GGGAAAAACGGCGAGCGT 61.351 61.111 16.62 0.00 0.00 5.07
53 54 1.363145 TATGGGAAAAACGGCGAGCG 61.363 55.000 16.62 0.00 0.00 5.03
54 55 0.098200 GTATGGGAAAAACGGCGAGC 59.902 55.000 16.62 0.00 0.00 5.03
55 56 0.730840 GGTATGGGAAAAACGGCGAG 59.269 55.000 16.62 0.00 0.00 5.03
56 57 0.325602 AGGTATGGGAAAAACGGCGA 59.674 50.000 16.62 0.00 0.00 5.54
57 58 2.027003 TAGGTATGGGAAAAACGGCG 57.973 50.000 4.80 4.80 0.00 6.46
58 59 4.994907 ATTTAGGTATGGGAAAAACGGC 57.005 40.909 0.00 0.00 0.00 5.68
71 72 7.776500 GGTTAAGCCATTTGACCTATTTAGGTA 59.224 37.037 9.25 0.00 46.29 3.08
76 77 5.014202 ACGGTTAAGCCATTTGACCTATTT 58.986 37.500 0.00 0.00 41.92 1.40
130 132 1.272536 GGCTAGATGTCTCCCCGGATA 60.273 57.143 0.73 0.00 0.00 2.59
149 151 2.385013 TCGTTGGAGACATGTCATGG 57.615 50.000 27.02 10.17 42.32 3.66
151 153 3.386078 AGCTATCGTTGGAGACATGTCAT 59.614 43.478 27.02 12.53 42.32 3.06
156 158 3.055819 ACACAAGCTATCGTTGGAGACAT 60.056 43.478 0.00 0.00 42.32 3.06
164 166 1.635663 GCGCCACACAAGCTATCGTT 61.636 55.000 0.00 0.00 0.00 3.85
178 180 1.377202 GGAATCTTGACCAGCGCCA 60.377 57.895 2.29 0.00 0.00 5.69
183 185 2.009042 GCCTGACGGAATCTTGACCAG 61.009 57.143 0.00 0.00 0.00 4.00
209 211 4.267503 GATCGTCGAGTCGGGGGC 62.268 72.222 13.54 0.23 0.00 5.80
213 215 2.337749 CTTGGGGATCGTCGAGTCGG 62.338 65.000 13.54 0.00 0.00 4.79
215 217 1.437986 CCTTGGGGATCGTCGAGTC 59.562 63.158 0.00 0.00 33.58 3.36
223 225 1.450312 CACGTCTGCCTTGGGGATC 60.450 63.158 0.00 0.00 33.58 3.36
224 226 2.671070 CACGTCTGCCTTGGGGAT 59.329 61.111 0.00 0.00 33.58 3.85
225 227 3.636231 CCACGTCTGCCTTGGGGA 61.636 66.667 0.00 0.00 33.58 4.81
235 238 0.249322 CGTTGAAGACCACCACGTCT 60.249 55.000 0.00 0.00 45.12 4.18
277 280 1.102222 GTCGACTCACCCGCCTATCT 61.102 60.000 8.70 0.00 0.00 1.98
280 283 3.129502 CGTCGACTCACCCGCCTA 61.130 66.667 14.70 0.00 0.00 3.93
304 307 1.067142 TCGTCTACATCCAGTTGTGCC 60.067 52.381 0.00 0.00 0.00 5.01
310 313 2.755655 CTCCAAGTCGTCTACATCCAGT 59.244 50.000 0.00 0.00 0.00 4.00
312 315 3.081710 TCTCCAAGTCGTCTACATCCA 57.918 47.619 0.00 0.00 0.00 3.41
318 321 1.776662 CCCCATCTCCAAGTCGTCTA 58.223 55.000 0.00 0.00 0.00 2.59
342 345 3.688159 GCTTGGCTGCCAACTGGG 61.688 66.667 29.24 20.13 38.75 4.45
344 347 1.288127 GAAGCTTGGCTGCCAACTG 59.712 57.895 29.24 21.18 38.75 3.16
345 348 2.263741 CGAAGCTTGGCTGCCAACT 61.264 57.895 29.24 25.18 38.75 3.16
394 408 5.657745 TGAGTAATAACCACTAACGGATCCA 59.342 40.000 13.41 0.00 0.00 3.41
396 410 5.690857 GCTGAGTAATAACCACTAACGGATC 59.309 44.000 0.00 0.00 0.00 3.36
403 417 5.396324 CCACATGGCTGAGTAATAACCACTA 60.396 44.000 0.00 0.00 32.13 2.74
404 418 4.517285 CACATGGCTGAGTAATAACCACT 58.483 43.478 0.00 0.00 32.13 4.00
410 424 4.469586 TGACTTCCACATGGCTGAGTAATA 59.530 41.667 0.00 0.00 34.44 0.98
425 439 3.430790 CGTCATATGCTTCCTGACTTCCA 60.431 47.826 0.00 0.00 37.68 3.53
445 459 0.378257 CAGCAGTTGCACTCAAACGT 59.622 50.000 6.90 0.00 45.16 3.99
452 466 0.940126 CGTCTTTCAGCAGTTGCACT 59.060 50.000 6.90 0.00 45.16 4.40
460 474 0.666274 CGTGCTACCGTCTTTCAGCA 60.666 55.000 0.00 0.00 41.52 4.41
465 479 0.244721 GTACCCGTGCTACCGTCTTT 59.755 55.000 0.00 0.00 0.00 2.52
469 483 1.514087 CATGTACCCGTGCTACCGT 59.486 57.895 0.00 0.00 0.00 4.83
470 484 4.412933 CATGTACCCGTGCTACCG 57.587 61.111 0.00 0.00 0.00 4.02
476 490 0.107703 ACCAGATGCATGTACCCGTG 60.108 55.000 2.46 0.00 0.00 4.94
477 491 0.618458 AACCAGATGCATGTACCCGT 59.382 50.000 2.46 0.00 0.00 5.28
478 492 1.401552 CAAACCAGATGCATGTACCCG 59.598 52.381 2.46 0.00 0.00 5.28
479 493 2.722094 TCAAACCAGATGCATGTACCC 58.278 47.619 2.46 0.00 0.00 3.69
480 494 4.675510 CATTCAAACCAGATGCATGTACC 58.324 43.478 2.46 0.00 0.00 3.34
481 495 4.107622 GCATTCAAACCAGATGCATGTAC 58.892 43.478 2.46 0.00 38.08 2.90
482 496 3.130869 GGCATTCAAACCAGATGCATGTA 59.869 43.478 2.46 0.00 39.78 2.29
483 497 2.093869 GGCATTCAAACCAGATGCATGT 60.094 45.455 2.46 0.00 39.78 3.21
484 498 2.093921 TGGCATTCAAACCAGATGCATG 60.094 45.455 2.46 0.00 39.78 4.06
485 499 2.181125 TGGCATTCAAACCAGATGCAT 58.819 42.857 0.00 0.00 39.78 3.96
486 500 1.630223 TGGCATTCAAACCAGATGCA 58.370 45.000 9.42 0.00 39.78 3.96
492 506 8.474025 CCTATTATTAAACTGGCATTCAAACCA 58.526 33.333 0.00 0.00 0.00 3.67
493 507 8.691797 TCCTATTATTAAACTGGCATTCAAACC 58.308 33.333 0.00 0.00 0.00 3.27
497 511 9.739276 CCTATCCTATTATTAAACTGGCATTCA 57.261 33.333 0.00 0.00 0.00 2.57
498 512 9.740710 ACCTATCCTATTATTAAACTGGCATTC 57.259 33.333 0.00 0.00 0.00 2.67
499 513 9.520515 CACCTATCCTATTATTAAACTGGCATT 57.479 33.333 0.00 0.00 0.00 3.56
500 514 8.669571 ACACCTATCCTATTATTAAACTGGCAT 58.330 33.333 0.00 0.00 0.00 4.40
501 515 8.041143 ACACCTATCCTATTATTAAACTGGCA 57.959 34.615 0.00 0.00 0.00 4.92
502 516 8.919777 AACACCTATCCTATTATTAAACTGGC 57.080 34.615 0.00 0.00 0.00 4.85
510 524 8.041323 CGATGCCTAAACACCTATCCTATTATT 58.959 37.037 0.00 0.00 0.00 1.40
522 536 1.084289 GGACACGATGCCTAAACACC 58.916 55.000 0.00 0.00 0.00 4.16
539 553 1.444836 CACCGTCGGCAAAAATAGGA 58.555 50.000 12.28 0.00 0.00 2.94
541 555 3.988459 CCACCGTCGGCAAAAATAG 57.012 52.632 12.28 0.00 0.00 1.73
554 568 1.067706 TCATCAAGCAAAATGCCACCG 60.068 47.619 0.00 0.00 46.52 4.94
555 569 2.028748 AGTCATCAAGCAAAATGCCACC 60.029 45.455 0.00 0.00 46.52 4.61
558 572 2.414138 GCAAGTCATCAAGCAAAATGCC 59.586 45.455 0.00 0.00 46.52 4.40
566 580 2.955614 AGCAAATGCAAGTCATCAAGC 58.044 42.857 8.28 0.00 45.16 4.01
567 581 5.917541 AAAAGCAAATGCAAGTCATCAAG 57.082 34.783 8.28 0.00 45.16 3.02
570 584 7.543172 TCAAGATAAAAGCAAATGCAAGTCATC 59.457 33.333 8.28 4.03 45.16 2.92
571 585 7.380536 TCAAGATAAAAGCAAATGCAAGTCAT 58.619 30.769 8.28 0.00 45.16 3.06
572 586 6.747125 TCAAGATAAAAGCAAATGCAAGTCA 58.253 32.000 8.28 0.00 45.16 3.41
573 587 6.865205 ACTCAAGATAAAAGCAAATGCAAGTC 59.135 34.615 8.28 0.00 45.16 3.01
574 588 6.752168 ACTCAAGATAAAAGCAAATGCAAGT 58.248 32.000 8.28 0.00 45.16 3.16
575 589 7.359765 CCAACTCAAGATAAAAGCAAATGCAAG 60.360 37.037 8.28 0.00 45.16 4.01
576 590 6.424509 CCAACTCAAGATAAAAGCAAATGCAA 59.575 34.615 8.28 0.00 45.16 4.08
577 591 5.927689 CCAACTCAAGATAAAAGCAAATGCA 59.072 36.000 8.28 0.00 45.16 3.96
578 592 5.349543 CCCAACTCAAGATAAAAGCAAATGC 59.650 40.000 0.00 0.00 42.49 3.56
579 593 6.690530 TCCCAACTCAAGATAAAAGCAAATG 58.309 36.000 0.00 0.00 0.00 2.32
580 594 6.916360 TCCCAACTCAAGATAAAAGCAAAT 57.084 33.333 0.00 0.00 0.00 2.32
581 595 6.916360 ATCCCAACTCAAGATAAAAGCAAA 57.084 33.333 0.00 0.00 0.00 3.68
582 596 6.493115 TGAATCCCAACTCAAGATAAAAGCAA 59.507 34.615 0.00 0.00 0.00 3.91
583 597 6.009589 TGAATCCCAACTCAAGATAAAAGCA 58.990 36.000 0.00 0.00 0.00 3.91
584 598 6.515272 TGAATCCCAACTCAAGATAAAAGC 57.485 37.500 0.00 0.00 0.00 3.51
585 599 9.401058 AGTATGAATCCCAACTCAAGATAAAAG 57.599 33.333 0.00 0.00 0.00 2.27
586 600 9.753674 AAGTATGAATCCCAACTCAAGATAAAA 57.246 29.630 0.00 0.00 0.00 1.52
587 601 9.177608 CAAGTATGAATCCCAACTCAAGATAAA 57.822 33.333 0.00 0.00 0.00 1.40
588 602 7.775093 CCAAGTATGAATCCCAACTCAAGATAA 59.225 37.037 0.00 0.00 0.00 1.75
589 603 7.092444 ACCAAGTATGAATCCCAACTCAAGATA 60.092 37.037 0.00 0.00 0.00 1.98
590 604 6.125029 CCAAGTATGAATCCCAACTCAAGAT 58.875 40.000 0.00 0.00 0.00 2.40
591 605 5.014123 ACCAAGTATGAATCCCAACTCAAGA 59.986 40.000 0.00 0.00 0.00 3.02
592 606 5.256474 ACCAAGTATGAATCCCAACTCAAG 58.744 41.667 0.00 0.00 0.00 3.02
601 615 3.460857 AGAGCGACCAAGTATGAATCC 57.539 47.619 0.00 0.00 0.00 3.01
625 639 9.646427 GGTGCACATAACCATTTTATTAGAAAA 57.354 29.630 20.43 0.00 37.65 2.29
640 654 3.126171 TGTTATCAAGCGGTGCACATAAC 59.874 43.478 20.43 20.41 32.37 1.89
641 655 3.126171 GTGTTATCAAGCGGTGCACATAA 59.874 43.478 20.43 9.85 0.00 1.90
643 657 1.468520 GTGTTATCAAGCGGTGCACAT 59.531 47.619 20.43 4.67 0.00 3.21
650 664 1.725641 TGAGCTGTGTTATCAAGCGG 58.274 50.000 0.00 0.00 0.00 5.52
669 719 4.351111 AGTGAGGTGGAAGTTAGGAACAAT 59.649 41.667 0.00 0.00 0.00 2.71
676 726 3.578716 TGGAAGAGTGAGGTGGAAGTTAG 59.421 47.826 0.00 0.00 0.00 2.34
683 733 5.677319 TTAATACTGGAAGAGTGAGGTGG 57.323 43.478 0.00 0.00 37.43 4.61
711 761 7.816031 TCGGATATAATTTCTTCGGGTACATTC 59.184 37.037 0.00 0.00 0.00 2.67
735 787 3.842126 CACGCTGCGGTCACATCG 61.842 66.667 26.95 0.14 0.00 3.84
760 812 7.147949 ACCGCTATAATTGTCAGTTGTACTACT 60.148 37.037 3.98 3.98 0.00 2.57
769 821 3.703420 GACGACCGCTATAATTGTCAGT 58.297 45.455 0.00 0.00 0.00 3.41
826 878 1.893808 GATGGGTGGGTGCATAGCG 60.894 63.158 0.00 0.00 0.00 4.26
938 993 6.676943 GCGCTGGTATAATTTTCACAGCTAAA 60.677 38.462 17.11 0.00 46.58 1.85
994 1069 6.183360 CCTTCTGGACATCTTTATACTCGGAA 60.183 42.308 0.00 0.00 34.57 4.30
1069 1151 3.876320 GCTAGCCAAAGATTTGAGGAGAG 59.124 47.826 2.29 0.00 40.55 3.20
1095 1177 1.002315 GCCATTGTTGCCCTGACAAAT 59.998 47.619 0.00 0.00 40.10 2.32
1181 1263 2.224137 TGATCGATGCACAATCTCCTCC 60.224 50.000 0.54 0.00 32.61 4.30
1182 1264 3.103447 TGATCGATGCACAATCTCCTC 57.897 47.619 0.54 0.00 32.61 3.71
1183 1265 3.766068 ATGATCGATGCACAATCTCCT 57.234 42.857 0.54 0.00 32.61 3.69
1184 1266 4.564041 AGTATGATCGATGCACAATCTCC 58.436 43.478 0.54 0.00 32.61 3.71
1187 1269 3.983988 ACGAGTATGATCGATGCACAATC 59.016 43.478 0.54 0.00 45.56 2.67
1193 1275 3.554259 TGGTACGAGTATGATCGATGC 57.446 47.619 0.54 0.00 45.56 3.91
1199 1281 3.728076 ACGCAATGGTACGAGTATGAT 57.272 42.857 0.00 0.00 0.00 2.45
1214 1296 2.032799 AGAAACGATCAAGCAAACGCAA 59.967 40.909 0.00 0.00 0.00 4.85
1217 1299 2.973224 CCAAGAAACGATCAAGCAAACG 59.027 45.455 0.00 0.00 0.00 3.60
1223 1305 5.445142 CGATCAACTCCAAGAAACGATCAAG 60.445 44.000 0.00 0.00 0.00 3.02
1224 1306 4.388773 CGATCAACTCCAAGAAACGATCAA 59.611 41.667 0.00 0.00 0.00 2.57
1237 1319 4.260375 CGAAAATCCACATCGATCAACTCC 60.260 45.833 0.00 0.00 38.82 3.85
1250 1332 8.514136 TTCAAATAATCACAACGAAAATCCAC 57.486 30.769 0.00 0.00 0.00 4.02
1558 1640 3.822192 CTCCACGACGATGGCGGA 61.822 66.667 0.00 0.00 43.17 5.54
1720 1802 3.195698 GAACCGCCATCGTCAGCC 61.196 66.667 0.00 0.00 0.00 4.85
1721 1803 1.696832 GAAGAACCGCCATCGTCAGC 61.697 60.000 0.00 0.00 0.00 4.26
1722 1804 0.108615 AGAAGAACCGCCATCGTCAG 60.109 55.000 0.00 0.00 0.00 3.51
1724 1806 1.000145 GAAGAAGAACCGCCATCGTC 59.000 55.000 0.00 0.00 0.00 4.20
1725 1807 0.736325 CGAAGAAGAACCGCCATCGT 60.736 55.000 0.00 0.00 0.00 3.73
1726 1808 1.421410 CCGAAGAAGAACCGCCATCG 61.421 60.000 0.00 0.00 0.00 3.84
1727 1809 0.108329 TCCGAAGAAGAACCGCCATC 60.108 55.000 0.00 0.00 0.00 3.51
1728 1810 0.108138 CTCCGAAGAAGAACCGCCAT 60.108 55.000 0.00 0.00 0.00 4.40
1729 1811 1.292223 CTCCGAAGAAGAACCGCCA 59.708 57.895 0.00 0.00 0.00 5.69
1730 1812 2.101233 GCTCCGAAGAAGAACCGCC 61.101 63.158 0.00 0.00 0.00 6.13
1731 1813 2.101233 GGCTCCGAAGAAGAACCGC 61.101 63.158 0.00 0.00 0.00 5.68
1732 1814 0.108138 ATGGCTCCGAAGAAGAACCG 60.108 55.000 0.00 0.00 0.00 4.44
1733 1815 1.373570 CATGGCTCCGAAGAAGAACC 58.626 55.000 0.00 0.00 0.00 3.62
1734 1816 1.373570 CCATGGCTCCGAAGAAGAAC 58.626 55.000 0.00 0.00 0.00 3.01
1786 1878 2.273179 CCACCAGCAGCTGCACATT 61.273 57.895 38.24 17.15 45.16 2.71
1824 1916 0.912487 TCACCTTGGGCCCTTCGTAT 60.912 55.000 25.70 0.00 0.00 3.06
2021 2113 2.497804 CGTGATCGCGGCGTTATTA 58.502 52.632 22.90 2.20 0.00 0.98
2022 2114 3.305623 CGTGATCGCGGCGTTATT 58.694 55.556 22.90 5.95 0.00 1.40
2032 2124 1.297672 ATCGTCGTCAGCGTGATCG 60.298 57.895 0.00 0.00 39.49 3.69
2033 2125 1.802300 GCATCGTCGTCAGCGTGATC 61.802 60.000 0.00 0.00 39.49 2.92
2034 2126 1.874019 GCATCGTCGTCAGCGTGAT 60.874 57.895 0.00 0.00 39.49 3.06
2035 2127 2.504026 GCATCGTCGTCAGCGTGA 60.504 61.111 0.00 0.00 39.49 4.35
2036 2128 2.782045 CTGCATCGTCGTCAGCGTG 61.782 63.158 0.00 0.00 39.49 5.34
2037 2129 2.504899 CTGCATCGTCGTCAGCGT 60.505 61.111 0.00 0.00 39.49 5.07
2038 2130 2.202479 TCTGCATCGTCGTCAGCG 60.202 61.111 0.00 0.00 39.92 5.18
2039 2131 1.136872 GAGTCTGCATCGTCGTCAGC 61.137 60.000 0.00 0.00 0.00 4.26
2040 2132 0.449786 AGAGTCTGCATCGTCGTCAG 59.550 55.000 0.00 0.00 0.00 3.51
2041 2133 0.169009 CAGAGTCTGCATCGTCGTCA 59.831 55.000 7.33 0.00 0.00 4.35
2042 2134 0.169230 ACAGAGTCTGCATCGTCGTC 59.831 55.000 20.31 0.00 34.37 4.20
2043 2135 1.450025 TACAGAGTCTGCATCGTCGT 58.550 50.000 20.31 0.40 34.37 4.34
2044 2136 2.544480 TTACAGAGTCTGCATCGTCG 57.456 50.000 20.31 0.00 34.37 5.12
2045 2137 4.033990 TCATTACAGAGTCTGCATCGTC 57.966 45.455 20.31 0.00 34.37 4.20
2046 2138 3.181482 CCTCATTACAGAGTCTGCATCGT 60.181 47.826 20.31 2.68 34.37 3.73
2047 2139 3.067320 TCCTCATTACAGAGTCTGCATCG 59.933 47.826 20.31 6.94 34.37 3.84
2048 2140 4.099266 ACTCCTCATTACAGAGTCTGCATC 59.901 45.833 20.31 0.00 36.06 3.91
2049 2141 4.029520 ACTCCTCATTACAGAGTCTGCAT 58.970 43.478 20.31 9.66 36.06 3.96
2050 2142 3.435275 ACTCCTCATTACAGAGTCTGCA 58.565 45.455 20.31 4.18 36.06 4.41
2051 2143 4.464069 AACTCCTCATTACAGAGTCTGC 57.536 45.455 20.31 0.00 39.92 4.26
2052 2144 7.776107 TCAATAACTCCTCATTACAGAGTCTG 58.224 38.462 18.83 18.83 39.92 3.51
2053 2145 7.962995 TCAATAACTCCTCATTACAGAGTCT 57.037 36.000 0.00 0.00 39.92 3.24
2054 2146 8.417106 TGATCAATAACTCCTCATTACAGAGTC 58.583 37.037 0.00 0.00 39.92 3.36
2055 2147 8.311395 TGATCAATAACTCCTCATTACAGAGT 57.689 34.615 0.00 0.00 42.58 3.24
2056 2148 9.775854 ATTGATCAATAACTCCTCATTACAGAG 57.224 33.333 19.42 0.00 35.39 3.35
2059 2151 9.685276 ACAATTGATCAATAACTCCTCATTACA 57.315 29.630 21.00 0.00 0.00 2.41
2062 2154 8.900781 CAGACAATTGATCAATAACTCCTCATT 58.099 33.333 21.00 0.00 0.00 2.57
2063 2155 8.051535 ACAGACAATTGATCAATAACTCCTCAT 58.948 33.333 21.00 0.00 0.00 2.90
2064 2156 7.397221 ACAGACAATTGATCAATAACTCCTCA 58.603 34.615 21.00 0.00 0.00 3.86
2065 2157 7.550551 TGACAGACAATTGATCAATAACTCCTC 59.449 37.037 21.00 14.80 0.00 3.71
2066 2158 7.397221 TGACAGACAATTGATCAATAACTCCT 58.603 34.615 21.00 11.03 0.00 3.69
2067 2159 7.615582 TGACAGACAATTGATCAATAACTCC 57.384 36.000 21.00 13.23 0.00 3.85
2068 2160 9.897744 TTTTGACAGACAATTGATCAATAACTC 57.102 29.630 21.00 14.55 38.36 3.01
2073 2165 8.945481 TTGTTTTTGACAGACAATTGATCAAT 57.055 26.923 15.36 15.36 39.94 2.57
2074 2166 8.768957 TTTGTTTTTGACAGACAATTGATCAA 57.231 26.923 13.59 11.26 39.94 2.57
2075 2167 8.655092 GTTTTGTTTTTGACAGACAATTGATCA 58.345 29.630 13.59 7.34 39.94 2.92
2076 2168 7.840797 CGTTTTGTTTTTGACAGACAATTGATC 59.159 33.333 13.59 6.20 39.94 2.92
2077 2169 7.673776 GCGTTTTGTTTTTGACAGACAATTGAT 60.674 33.333 13.59 0.00 39.94 2.57
2078 2170 6.400515 GCGTTTTGTTTTTGACAGACAATTGA 60.401 34.615 13.59 0.00 39.94 2.57
2079 2171 5.727592 GCGTTTTGTTTTTGACAGACAATTG 59.272 36.000 3.24 3.24 39.94 2.32
2080 2172 5.406780 TGCGTTTTGTTTTTGACAGACAATT 59.593 32.000 3.08 0.00 39.94 2.32
2081 2173 4.926238 TGCGTTTTGTTTTTGACAGACAAT 59.074 33.333 3.08 0.00 39.94 2.71
2082 2174 4.299155 TGCGTTTTGTTTTTGACAGACAA 58.701 34.783 0.00 0.00 39.94 3.18
2083 2175 3.902150 TGCGTTTTGTTTTTGACAGACA 58.098 36.364 0.00 0.00 39.94 3.41
2084 2176 3.303229 CCTGCGTTTTGTTTTTGACAGAC 59.697 43.478 0.00 0.00 39.94 3.51
2085 2177 3.191581 TCCTGCGTTTTGTTTTTGACAGA 59.808 39.130 0.00 0.00 39.94 3.41
2086 2178 3.506810 TCCTGCGTTTTGTTTTTGACAG 58.493 40.909 0.00 0.00 39.94 3.51
2087 2179 3.577649 TCCTGCGTTTTGTTTTTGACA 57.422 38.095 0.00 0.00 36.19 3.58
2088 2180 4.207019 CAGATCCTGCGTTTTGTTTTTGAC 59.793 41.667 0.00 0.00 0.00 3.18
2089 2181 4.358851 CAGATCCTGCGTTTTGTTTTTGA 58.641 39.130 0.00 0.00 0.00 2.69
2090 2182 3.490526 CCAGATCCTGCGTTTTGTTTTTG 59.509 43.478 0.00 0.00 0.00 2.44
2091 2183 3.492482 CCCAGATCCTGCGTTTTGTTTTT 60.492 43.478 0.00 0.00 0.00 1.94
2092 2184 2.035832 CCCAGATCCTGCGTTTTGTTTT 59.964 45.455 0.00 0.00 0.00 2.43
2093 2185 1.613437 CCCAGATCCTGCGTTTTGTTT 59.387 47.619 0.00 0.00 0.00 2.83
2094 2186 1.202879 TCCCAGATCCTGCGTTTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
2095 2187 0.400213 TCCCAGATCCTGCGTTTTGT 59.600 50.000 0.00 0.00 0.00 2.83
2096 2188 1.470098 CTTCCCAGATCCTGCGTTTTG 59.530 52.381 0.00 0.00 0.00 2.44
2097 2189 1.826385 CTTCCCAGATCCTGCGTTTT 58.174 50.000 0.00 0.00 0.00 2.43
2098 2190 0.678048 GCTTCCCAGATCCTGCGTTT 60.678 55.000 0.00 0.00 0.00 3.60
2099 2191 1.078143 GCTTCCCAGATCCTGCGTT 60.078 57.895 0.00 0.00 0.00 4.84
2100 2192 2.586792 GCTTCCCAGATCCTGCGT 59.413 61.111 0.00 0.00 0.00 5.24
2101 2193 2.587194 CGCTTCCCAGATCCTGCG 60.587 66.667 0.00 0.00 37.57 5.18
2102 2194 1.227497 CTCGCTTCCCAGATCCTGC 60.227 63.158 0.00 0.00 0.00 4.85
2103 2195 1.045350 TCCTCGCTTCCCAGATCCTG 61.045 60.000 0.00 0.00 0.00 3.86
2207 2299 1.913762 CTCCTTCCCGTGGTGGTCT 60.914 63.158 0.00 0.00 35.15 3.85
2219 2311 4.821589 CGCGACAGGGCCTCCTTC 62.822 72.222 0.95 0.00 42.67 3.46
2392 2484 1.602771 GAAGAAGAACCCCCTCCGG 59.397 63.158 0.00 0.00 0.00 5.14
2393 2485 1.218316 CGAAGAAGAACCCCCTCCG 59.782 63.158 0.00 0.00 0.00 4.63
2394 2486 0.249676 GACGAAGAAGAACCCCCTCC 59.750 60.000 0.00 0.00 0.00 4.30
2395 2487 1.268066 AGACGAAGAAGAACCCCCTC 58.732 55.000 0.00 0.00 0.00 4.30
2397 2489 1.338864 GGAAGACGAAGAAGAACCCCC 60.339 57.143 0.00 0.00 0.00 5.40
2398 2490 1.346722 TGGAAGACGAAGAAGAACCCC 59.653 52.381 0.00 0.00 0.00 4.95
2399 2491 2.037381 ACTGGAAGACGAAGAAGAACCC 59.963 50.000 0.00 0.00 37.43 4.11
2401 2493 3.060602 CCACTGGAAGACGAAGAAGAAC 58.939 50.000 0.00 0.00 37.43 3.01
2402 2494 2.698797 ACCACTGGAAGACGAAGAAGAA 59.301 45.455 0.71 0.00 37.43 2.52
2411 2525 1.021390 CGCCATCACCACTGGAAGAC 61.021 60.000 0.71 0.00 37.43 3.01
2460 2574 1.716050 CACACACGACACGAGATGAAG 59.284 52.381 0.00 0.00 0.00 3.02
2482 2596 6.086765 GCTCGACAACAATTCAACATACAAAG 59.913 38.462 0.00 0.00 0.00 2.77
2568 3066 3.759086 GGGAGAGAAAGACCCAAATGTTC 59.241 47.826 0.00 0.00 42.81 3.18
2578 3076 1.555533 ACCGGAATGGGAGAGAAAGAC 59.444 52.381 9.46 0.00 44.64 3.01
2588 3086 1.595794 CGAAATAACGACCGGAATGGG 59.404 52.381 9.46 0.00 44.64 4.00
2645 3144 0.647410 CTTTGCTGACACTATCCGCG 59.353 55.000 0.00 0.00 40.27 6.46
2748 3269 7.684062 AAGTGACATTTTCAATCTTTTGTCG 57.316 32.000 0.00 0.00 37.01 4.35
2819 3361 7.028962 CACGAATCTTGGCAAAAGAATCAATA 58.971 34.615 13.72 0.00 0.00 1.90
2833 3375 5.569059 GCAGACAAATTTACACGAATCTTGG 59.431 40.000 0.00 0.00 0.00 3.61
2846 3388 5.687285 GTCAGAAATTCGTGCAGACAAATTT 59.313 36.000 7.57 7.57 31.80 1.82
2847 3389 5.215160 GTCAGAAATTCGTGCAGACAAATT 58.785 37.500 0.00 0.00 0.00 1.82
2849 3391 3.003275 GGTCAGAAATTCGTGCAGACAAA 59.997 43.478 0.00 0.00 0.00 2.83
2852 3394 2.143122 TGGTCAGAAATTCGTGCAGAC 58.857 47.619 0.00 0.00 0.00 3.51
2856 3398 3.829886 TCAATGGTCAGAAATTCGTGC 57.170 42.857 0.00 0.00 0.00 5.34
2860 3402 7.596494 TCAAGACAATCAATGGTCAGAAATTC 58.404 34.615 0.55 0.00 36.50 2.17
2863 3405 6.298361 TCTCAAGACAATCAATGGTCAGAAA 58.702 36.000 0.55 0.00 36.50 2.52
2864 3406 5.868454 TCTCAAGACAATCAATGGTCAGAA 58.132 37.500 0.55 0.00 36.50 3.02
2865 3407 5.488262 TCTCAAGACAATCAATGGTCAGA 57.512 39.130 0.55 0.00 36.50 3.27
2866 3408 5.936372 TCTTCTCAAGACAATCAATGGTCAG 59.064 40.000 0.55 0.00 36.50 3.51
2867 3409 5.868454 TCTTCTCAAGACAATCAATGGTCA 58.132 37.500 0.55 0.00 36.50 4.02
2868 3410 6.373774 ACATCTTCTCAAGACAATCAATGGTC 59.626 38.462 0.00 0.00 41.01 4.02
2869 3411 6.243900 ACATCTTCTCAAGACAATCAATGGT 58.756 36.000 0.00 0.00 41.01 3.55
2870 3412 6.754702 ACATCTTCTCAAGACAATCAATGG 57.245 37.500 0.00 0.00 41.01 3.16
2871 3413 7.813645 TCAACATCTTCTCAAGACAATCAATG 58.186 34.615 0.00 0.00 41.01 2.82
2872 3414 7.991084 TCAACATCTTCTCAAGACAATCAAT 57.009 32.000 0.00 0.00 41.01 2.57
2873 3415 7.806409 TTCAACATCTTCTCAAGACAATCAA 57.194 32.000 0.00 0.00 41.01 2.57
2874 3416 7.991084 ATTCAACATCTTCTCAAGACAATCA 57.009 32.000 0.00 0.00 41.01 2.57
2899 3444 6.488683 TGACCGAAAACAAGGATAGTTCAAAT 59.511 34.615 0.00 0.00 0.00 2.32
2905 3450 4.618920 ACTGACCGAAAACAAGGATAGT 57.381 40.909 0.00 0.00 0.00 2.12
2906 3451 4.994852 TCAACTGACCGAAAACAAGGATAG 59.005 41.667 0.00 0.00 0.00 2.08
2908 3453 3.815809 TCAACTGACCGAAAACAAGGAT 58.184 40.909 0.00 0.00 0.00 3.24
2989 3536 6.946340 AGAAGAAGAAAAAGGAAGGCAAAAA 58.054 32.000 0.00 0.00 0.00 1.94
2990 3537 6.544928 AGAAGAAGAAAAAGGAAGGCAAAA 57.455 33.333 0.00 0.00 0.00 2.44
2991 3538 6.544928 AAGAAGAAGAAAAAGGAAGGCAAA 57.455 33.333 0.00 0.00 0.00 3.68
2992 3539 6.544928 AAAGAAGAAGAAAAAGGAAGGCAA 57.455 33.333 0.00 0.00 0.00 4.52
2993 3540 6.544928 AAAAGAAGAAGAAAAAGGAAGGCA 57.455 33.333 0.00 0.00 0.00 4.75
2994 3541 8.198109 ACTAAAAAGAAGAAGAAAAAGGAAGGC 58.802 33.333 0.00 0.00 0.00 4.35
2995 3542 9.737427 GACTAAAAAGAAGAAGAAAAAGGAAGG 57.263 33.333 0.00 0.00 0.00 3.46
3088 3647 9.305555 ACACTCCGGTATAACTTACATACATAT 57.694 33.333 0.00 0.00 31.67 1.78
3089 3648 8.696043 ACACTCCGGTATAACTTACATACATA 57.304 34.615 0.00 0.00 31.67 2.29
3090 3649 7.592885 ACACTCCGGTATAACTTACATACAT 57.407 36.000 0.00 0.00 31.67 2.29
3091 3650 8.518430 TTACACTCCGGTATAACTTACATACA 57.482 34.615 0.00 0.00 31.67 2.29
3092 3651 9.801873 TTTTACACTCCGGTATAACTTACATAC 57.198 33.333 0.00 0.00 0.00 2.39
3094 3653 9.895138 ATTTTTACACTCCGGTATAACTTACAT 57.105 29.630 0.00 0.00 0.00 2.29
3095 3654 9.723601 AATTTTTACACTCCGGTATAACTTACA 57.276 29.630 0.00 0.00 0.00 2.41
3096 3655 9.977762 CAATTTTTACACTCCGGTATAACTTAC 57.022 33.333 0.00 0.00 0.00 2.34
3097 3656 8.667463 GCAATTTTTACACTCCGGTATAACTTA 58.333 33.333 0.00 0.00 0.00 2.24
3098 3657 7.175293 TGCAATTTTTACACTCCGGTATAACTT 59.825 33.333 0.00 0.00 0.00 2.66
3099 3658 6.655848 TGCAATTTTTACACTCCGGTATAACT 59.344 34.615 0.00 0.00 0.00 2.24
3100 3659 6.744082 GTGCAATTTTTACACTCCGGTATAAC 59.256 38.462 0.00 0.00 0.00 1.89
3101 3660 6.655848 AGTGCAATTTTTACACTCCGGTATAA 59.344 34.615 0.00 0.00 40.56 0.98
3102 3661 6.174760 AGTGCAATTTTTACACTCCGGTATA 58.825 36.000 0.00 0.00 40.56 1.47
3103 3662 5.007682 AGTGCAATTTTTACACTCCGGTAT 58.992 37.500 0.00 0.00 40.56 2.73
3104 3663 4.391155 AGTGCAATTTTTACACTCCGGTA 58.609 39.130 0.00 0.00 40.56 4.02
3105 3664 3.219281 AGTGCAATTTTTACACTCCGGT 58.781 40.909 0.00 0.00 40.56 5.28
3106 3665 3.915437 AGTGCAATTTTTACACTCCGG 57.085 42.857 0.00 0.00 40.56 5.14
3140 3699 5.895928 TGCACTTTTTGTAGTATGCACAAA 58.104 33.333 0.00 7.20 42.53 2.83
3141 3700 5.506686 TGCACTTTTTGTAGTATGCACAA 57.493 34.783 0.00 0.00 34.18 3.33
3142 3701 5.506686 TTGCACTTTTTGTAGTATGCACA 57.493 34.783 0.00 0.00 29.86 4.57
3143 3702 7.406799 AAATTGCACTTTTTGTAGTATGCAC 57.593 32.000 0.00 0.00 29.86 4.57
3144 3703 9.190858 CTAAAATTGCACTTTTTGTAGTATGCA 57.809 29.630 18.41 0.00 31.15 3.96
3145 3704 9.191995 ACTAAAATTGCACTTTTTGTAGTATGC 57.808 29.630 21.42 0.00 34.06 3.14
3147 3706 9.191995 GCACTAAAATTGCACTTTTTGTAGTAT 57.808 29.630 21.99 4.31 39.93 2.12
3148 3707 8.191446 TGCACTAAAATTGCACTTTTTGTAGTA 58.809 29.630 21.99 15.34 45.06 1.82
3149 3708 7.038659 TGCACTAAAATTGCACTTTTTGTAGT 58.961 30.769 21.99 15.72 45.06 2.73
3150 3709 7.462109 TGCACTAAAATTGCACTTTTTGTAG 57.538 32.000 21.99 17.87 45.06 2.74
3161 3720 3.059665 GCACAACCTTGCACTAAAATTGC 60.060 43.478 0.00 0.00 42.49 3.56
3162 3721 4.713854 GCACAACCTTGCACTAAAATTG 57.286 40.909 0.00 0.00 42.49 2.32
3172 3731 5.671742 AATAAAAATGTGCACAACCTTGC 57.328 34.783 25.72 0.00 43.31 4.01
3173 3732 9.810231 GAAATAATAAAAATGTGCACAACCTTG 57.190 29.630 25.72 0.00 0.00 3.61
3174 3733 9.777297 AGAAATAATAAAAATGTGCACAACCTT 57.223 25.926 25.72 18.07 0.00 3.50
3175 3734 9.777297 AAGAAATAATAAAAATGTGCACAACCT 57.223 25.926 25.72 8.70 0.00 3.50
3281 3840 8.689061 GGGTGTTACCTTAAAGAAGAAAGAAAA 58.311 33.333 0.00 0.00 38.64 2.29
3282 3841 7.835181 TGGGTGTTACCTTAAAGAAGAAAGAAA 59.165 33.333 0.00 0.00 38.64 2.52
3283 3842 7.348033 TGGGTGTTACCTTAAAGAAGAAAGAA 58.652 34.615 0.00 0.00 38.64 2.52
3284 3843 6.902408 TGGGTGTTACCTTAAAGAAGAAAGA 58.098 36.000 0.00 0.00 38.64 2.52
3285 3844 7.593825 CATGGGTGTTACCTTAAAGAAGAAAG 58.406 38.462 0.00 0.00 38.64 2.62
3286 3845 6.015772 GCATGGGTGTTACCTTAAAGAAGAAA 60.016 38.462 0.00 0.00 38.64 2.52
3287 3846 5.475564 GCATGGGTGTTACCTTAAAGAAGAA 59.524 40.000 0.00 0.00 38.64 2.52
3288 3847 5.007682 GCATGGGTGTTACCTTAAAGAAGA 58.992 41.667 0.00 0.00 38.64 2.87
3289 3848 4.157840 GGCATGGGTGTTACCTTAAAGAAG 59.842 45.833 0.00 0.00 38.64 2.85
3290 3849 4.083565 GGCATGGGTGTTACCTTAAAGAA 58.916 43.478 0.00 0.00 38.64 2.52
3291 3850 3.074687 TGGCATGGGTGTTACCTTAAAGA 59.925 43.478 0.00 0.00 38.64 2.52
3292 3851 3.192633 GTGGCATGGGTGTTACCTTAAAG 59.807 47.826 0.00 0.00 38.64 1.85
3293 3852 3.158676 GTGGCATGGGTGTTACCTTAAA 58.841 45.455 0.00 0.00 38.64 1.52
3294 3853 2.377193 AGTGGCATGGGTGTTACCTTAA 59.623 45.455 0.00 0.00 38.64 1.85
3295 3854 1.989586 AGTGGCATGGGTGTTACCTTA 59.010 47.619 0.00 0.00 38.64 2.69
3296 3855 0.777446 AGTGGCATGGGTGTTACCTT 59.223 50.000 0.00 0.00 38.64 3.50
3297 3856 1.663911 TAGTGGCATGGGTGTTACCT 58.336 50.000 0.00 0.00 38.64 3.08
3298 3857 2.500392 TTAGTGGCATGGGTGTTACC 57.500 50.000 0.00 0.00 37.60 2.85
3299 3858 5.190677 ACTAATTAGTGGCATGGGTGTTAC 58.809 41.667 17.35 0.00 34.72 2.50
3300 3859 5.444744 ACTAATTAGTGGCATGGGTGTTA 57.555 39.130 17.35 0.00 34.72 2.41
3301 3860 4.316025 ACTAATTAGTGGCATGGGTGTT 57.684 40.909 17.35 0.00 34.72 3.32
3302 3861 4.270008 GAACTAATTAGTGGCATGGGTGT 58.730 43.478 18.70 0.00 36.50 4.16
3303 3862 3.632145 GGAACTAATTAGTGGCATGGGTG 59.368 47.826 18.70 0.00 36.50 4.61
3304 3863 3.527665 AGGAACTAATTAGTGGCATGGGT 59.472 43.478 18.70 0.36 36.02 4.51
3305 3864 4.170468 AGGAACTAATTAGTGGCATGGG 57.830 45.455 18.70 0.00 36.02 4.00
3306 3865 5.440610 AGAAGGAACTAATTAGTGGCATGG 58.559 41.667 18.70 0.00 38.49 3.66
3307 3866 7.987458 TCTAAGAAGGAACTAATTAGTGGCATG 59.013 37.037 18.70 4.42 38.49 4.06
3308 3867 8.090788 TCTAAGAAGGAACTAATTAGTGGCAT 57.909 34.615 18.70 9.14 38.49 4.40
3309 3868 7.490657 TCTAAGAAGGAACTAATTAGTGGCA 57.509 36.000 18.70 0.00 38.49 4.92
3310 3869 8.966069 AATCTAAGAAGGAACTAATTAGTGGC 57.034 34.615 18.70 13.28 38.49 5.01
3311 3870 9.549078 GGAATCTAAGAAGGAACTAATTAGTGG 57.451 37.037 18.70 0.00 38.49 4.00
3318 3877 9.503399 GTGAAAAGGAATCTAAGAAGGAACTAA 57.497 33.333 0.00 0.00 38.49 2.24
3319 3878 8.656806 TGTGAAAAGGAATCTAAGAAGGAACTA 58.343 33.333 0.00 0.00 38.49 2.24
3321 3880 7.745620 TGTGAAAAGGAATCTAAGAAGGAAC 57.254 36.000 0.00 0.00 0.00 3.62
3322 3881 8.760980 TTTGTGAAAAGGAATCTAAGAAGGAA 57.239 30.769 0.00 0.00 0.00 3.36
3323 3882 8.760980 TTTTGTGAAAAGGAATCTAAGAAGGA 57.239 30.769 0.00 0.00 0.00 3.36
3349 3908 9.436957 CAAGGATAAGCGTATAATAGTGGATTT 57.563 33.333 0.00 0.00 0.00 2.17
3350 3909 7.549488 GCAAGGATAAGCGTATAATAGTGGATT 59.451 37.037 0.00 0.00 0.00 3.01
3351 3910 7.042335 GCAAGGATAAGCGTATAATAGTGGAT 58.958 38.462 0.00 0.00 0.00 3.41
3352 3911 6.014925 TGCAAGGATAAGCGTATAATAGTGGA 60.015 38.462 0.00 0.00 0.00 4.02
3353 3912 6.163476 TGCAAGGATAAGCGTATAATAGTGG 58.837 40.000 0.00 0.00 0.00 4.00
3354 3913 7.834068 ATGCAAGGATAAGCGTATAATAGTG 57.166 36.000 0.00 0.00 0.00 2.74
3361 3920 9.448438 TTTCATAATATGCAAGGATAAGCGTAT 57.552 29.630 0.00 0.00 42.92 3.06
3362 3921 8.840833 TTTCATAATATGCAAGGATAAGCGTA 57.159 30.769 0.00 0.00 36.74 4.42
3363 3922 7.744087 TTTCATAATATGCAAGGATAAGCGT 57.256 32.000 0.00 0.00 0.00 5.07
3441 4000 9.138596 GGCATTGGTATTACCCTTTAAGAAATA 57.861 33.333 10.37 0.00 37.50 1.40
3442 4001 7.621683 TGGCATTGGTATTACCCTTTAAGAAAT 59.378 33.333 10.37 0.00 37.50 2.17
3443 4002 6.954684 TGGCATTGGTATTACCCTTTAAGAAA 59.045 34.615 10.37 0.00 37.50 2.52
3444 4003 6.378848 GTGGCATTGGTATTACCCTTTAAGAA 59.621 38.462 10.37 0.00 37.50 2.52
3445 4004 5.889289 GTGGCATTGGTATTACCCTTTAAGA 59.111 40.000 10.37 0.00 37.50 2.10
3446 4005 5.891551 AGTGGCATTGGTATTACCCTTTAAG 59.108 40.000 10.37 0.00 37.50 1.85
3447 4006 5.833340 AGTGGCATTGGTATTACCCTTTAA 58.167 37.500 10.37 0.00 37.50 1.52
3448 4007 5.459982 AGTGGCATTGGTATTACCCTTTA 57.540 39.130 10.37 0.00 37.50 1.85
3449 4008 4.331159 AGTGGCATTGGTATTACCCTTT 57.669 40.909 10.37 0.00 37.50 3.11
3450 4009 5.459982 TTAGTGGCATTGGTATTACCCTT 57.540 39.130 10.37 0.00 37.50 3.95
3451 4010 5.663158 ATTAGTGGCATTGGTATTACCCT 57.337 39.130 10.37 1.22 37.50 4.34
3452 4011 6.724893 AAATTAGTGGCATTGGTATTACCC 57.275 37.500 10.37 0.00 37.50 3.69
3540 4099 9.480053 CCTTAAAGCAGAAAGAAAATGAAATGA 57.520 29.630 0.00 0.00 0.00 2.57
3541 4100 9.264719 ACCTTAAAGCAGAAAGAAAATGAAATG 57.735 29.630 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.