Multiple sequence alignment - TraesCS1B01G251600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G251600 chr1B 100.000 3159 0 0 534 3692 444343945 444347103 0.000000e+00 5834
1 TraesCS1B01G251600 chr1B 87.709 895 79 5 2777 3643 402041071 402040180 0.000000e+00 1014
2 TraesCS1B01G251600 chr1B 100.000 196 0 0 1 196 444343412 444343607 2.710000e-96 363
3 TraesCS1B01G251600 chr1B 92.262 168 13 0 7 174 616911194 616911027 4.770000e-59 239
4 TraesCS1B01G251600 chr1D 96.647 1849 53 1 925 2773 329499969 329501808 0.000000e+00 3062
5 TraesCS1B01G251600 chr1D 87.559 844 92 10 2776 3611 405383460 405384298 0.000000e+00 965
6 TraesCS1B01G251600 chr1D 88.224 535 49 11 3085 3611 279520621 279521149 8.700000e-176 627
7 TraesCS1B01G251600 chr1D 88.387 155 11 3 755 905 329499685 329499836 2.930000e-41 180
8 TraesCS1B01G251600 chr1A 95.558 1801 65 6 977 2773 426728737 426730526 0.000000e+00 2868
9 TraesCS1B01G251600 chr1A 86.140 873 88 12 2766 3611 551301396 551302262 0.000000e+00 911
10 TraesCS1B01G251600 chr1A 85.169 236 11 8 740 964 426727430 426727652 1.730000e-53 220
11 TraesCS1B01G251600 chr3B 88.639 889 70 5 2777 3638 633360029 633359145 0.000000e+00 1053
12 TraesCS1B01G251600 chr3B 87.597 903 82 7 2768 3643 730897992 730898891 0.000000e+00 1020
13 TraesCS1B01G251600 chr3B 83.289 377 63 0 1884 2260 765862683 765863059 7.590000e-92 348
14 TraesCS1B01G251600 chr3B 82.493 377 66 0 1884 2260 66467499 66467123 7.640000e-87 331
15 TraesCS1B01G251600 chr3B 81.963 377 68 0 1884 2260 807677943 807677567 1.650000e-83 320
16 TraesCS1B01G251600 chr3B 93.717 191 12 0 6 196 31982494 31982684 1.680000e-73 287
17 TraesCS1B01G251600 chr3B 89.252 214 22 1 534 747 31982731 31982943 2.190000e-67 267
18 TraesCS1B01G251600 chr7B 87.322 915 82 10 2760 3643 333400305 333401216 0.000000e+00 1016
19 TraesCS1B01G251600 chr7B 86.093 906 95 5 2766 3643 105004615 105003713 0.000000e+00 946
20 TraesCS1B01G251600 chr7B 82.759 377 65 0 1884 2260 5260709 5260333 1.640000e-88 337
21 TraesCS1B01G251600 chr7B 81.989 372 67 0 1884 2255 41290005 41289634 2.140000e-82 316
22 TraesCS1B01G251600 chr7B 86.228 167 20 2 576 742 229819771 229819608 1.050000e-40 178
23 TraesCS1B01G251600 chr6B 87.361 902 73 10 2768 3642 90959358 90960245 0.000000e+00 996
24 TraesCS1B01G251600 chr4D 88.634 827 81 10 2791 3611 208557136 208556317 0.000000e+00 994
25 TraesCS1B01G251600 chr4D 85.780 872 88 16 2770 3611 13575898 13575033 0.000000e+00 891
26 TraesCS1B01G251600 chr4D 80.696 891 145 20 2765 3640 96525692 96524814 0.000000e+00 667
27 TraesCS1B01G251600 chr4D 86.792 159 20 1 582 740 169121943 169122100 3.790000e-40 176
28 TraesCS1B01G251600 chr4B 87.529 874 75 12 2767 3611 659614407 659615275 0.000000e+00 979
29 TraesCS1B01G251600 chr3D 87.515 849 86 13 2771 3611 574846311 574845475 0.000000e+00 963
30 TraesCS1B01G251600 chr3D 74.074 513 115 14 1200 1703 586298852 586299355 1.050000e-45 195
31 TraesCS1B01G251600 chr3D 85.294 170 21 2 575 741 221045754 221045586 4.900000e-39 172
32 TraesCS1B01G251600 chr5D 83.582 871 122 17 2783 3642 62514915 62515775 0.000000e+00 797
33 TraesCS1B01G251600 chr5D 82.703 185 25 4 557 738 540026263 540026443 1.370000e-34 158
34 TraesCS1B01G251600 chr6A 85.602 764 75 13 2761 3494 58035963 58035205 0.000000e+00 769
35 TraesCS1B01G251600 chr7D 84.626 709 91 14 2903 3602 14770679 14769980 0.000000e+00 689
36 TraesCS1B01G251600 chr7D 83.452 701 98 13 2903 3594 173898300 173897609 1.450000e-178 636
37 TraesCS1B01G251600 chr5A 78.281 884 141 33 2771 3640 509902631 509903477 4.230000e-144 521
38 TraesCS1B01G251600 chr2A 88.554 166 15 3 576 740 115438840 115438678 8.090000e-47 198
39 TraesCS1B01G251600 chr3A 87.425 167 18 2 576 742 45583163 45583326 4.870000e-44 189
40 TraesCS1B01G251600 chrUn 85.714 168 21 2 576 743 150892343 150892179 1.360000e-39 174
41 TraesCS1B01G251600 chrUn 85.714 168 21 2 576 743 150931386 150931222 1.360000e-39 174
42 TraesCS1B01G251600 chr5B 74.184 337 73 10 1369 1702 662989163 662989488 1.080000e-25 128
43 TraesCS1B01G251600 chr7A 82.237 152 17 5 2556 2697 106729590 106729741 5.010000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G251600 chr1B 444343412 444347103 3691 False 3098.5 5834 100.0000 1 3692 2 chr1B.!!$F1 3691
1 TraesCS1B01G251600 chr1B 402040180 402041071 891 True 1014.0 1014 87.7090 2777 3643 1 chr1B.!!$R1 866
2 TraesCS1B01G251600 chr1D 329499685 329501808 2123 False 1621.0 3062 92.5170 755 2773 2 chr1D.!!$F3 2018
3 TraesCS1B01G251600 chr1D 405383460 405384298 838 False 965.0 965 87.5590 2776 3611 1 chr1D.!!$F2 835
4 TraesCS1B01G251600 chr1D 279520621 279521149 528 False 627.0 627 88.2240 3085 3611 1 chr1D.!!$F1 526
5 TraesCS1B01G251600 chr1A 426727430 426730526 3096 False 1544.0 2868 90.3635 740 2773 2 chr1A.!!$F2 2033
6 TraesCS1B01G251600 chr1A 551301396 551302262 866 False 911.0 911 86.1400 2766 3611 1 chr1A.!!$F1 845
7 TraesCS1B01G251600 chr3B 633359145 633360029 884 True 1053.0 1053 88.6390 2777 3638 1 chr3B.!!$R2 861
8 TraesCS1B01G251600 chr3B 730897992 730898891 899 False 1020.0 1020 87.5970 2768 3643 1 chr3B.!!$F1 875
9 TraesCS1B01G251600 chr7B 333400305 333401216 911 False 1016.0 1016 87.3220 2760 3643 1 chr7B.!!$F1 883
10 TraesCS1B01G251600 chr7B 105003713 105004615 902 True 946.0 946 86.0930 2766 3643 1 chr7B.!!$R3 877
11 TraesCS1B01G251600 chr6B 90959358 90960245 887 False 996.0 996 87.3610 2768 3642 1 chr6B.!!$F1 874
12 TraesCS1B01G251600 chr4D 208556317 208557136 819 True 994.0 994 88.6340 2791 3611 1 chr4D.!!$R3 820
13 TraesCS1B01G251600 chr4D 13575033 13575898 865 True 891.0 891 85.7800 2770 3611 1 chr4D.!!$R1 841
14 TraesCS1B01G251600 chr4D 96524814 96525692 878 True 667.0 667 80.6960 2765 3640 1 chr4D.!!$R2 875
15 TraesCS1B01G251600 chr4B 659614407 659615275 868 False 979.0 979 87.5290 2767 3611 1 chr4B.!!$F1 844
16 TraesCS1B01G251600 chr3D 574845475 574846311 836 True 963.0 963 87.5150 2771 3611 1 chr3D.!!$R2 840
17 TraesCS1B01G251600 chr5D 62514915 62515775 860 False 797.0 797 83.5820 2783 3642 1 chr5D.!!$F1 859
18 TraesCS1B01G251600 chr6A 58035205 58035963 758 True 769.0 769 85.6020 2761 3494 1 chr6A.!!$R1 733
19 TraesCS1B01G251600 chr7D 14769980 14770679 699 True 689.0 689 84.6260 2903 3602 1 chr7D.!!$R1 699
20 TraesCS1B01G251600 chr7D 173897609 173898300 691 True 636.0 636 83.4520 2903 3594 1 chr7D.!!$R2 691
21 TraesCS1B01G251600 chr5A 509902631 509903477 846 False 521.0 521 78.2810 2771 3640 1 chr5A.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 655 0.039764 ATGTCTCAGTCCCGGTCTCA 59.960 55.0 0.00 0.00 0.00 3.27 F
1184 2390 0.110509 CGAGTTTCTCCGTCGACGAA 60.111 55.0 37.65 19.79 43.02 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 2712 1.043673 AGCGGGAGGAGAAAGCGTAT 61.044 55.0 0.00 0.0 0.00 3.06 R
2731 3937 0.469144 GGACAAACCCAGAAGGCCAA 60.469 55.0 5.01 0.0 40.58 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.368980 GCGCAGGTTATGAATTCGTC 57.631 50.000 0.30 0.00 0.00 4.20
20 21 1.332028 GCGCAGGTTATGAATTCGTCG 60.332 52.381 0.30 1.73 0.00 5.12
21 22 1.257936 CGCAGGTTATGAATTCGTCGG 59.742 52.381 2.72 0.00 0.00 4.79
22 23 2.277084 GCAGGTTATGAATTCGTCGGT 58.723 47.619 2.72 0.00 0.00 4.69
23 24 2.030457 GCAGGTTATGAATTCGTCGGTG 59.970 50.000 2.72 0.00 0.00 4.94
24 25 2.030457 CAGGTTATGAATTCGTCGGTGC 59.970 50.000 2.72 0.00 0.00 5.01
25 26 2.093658 AGGTTATGAATTCGTCGGTGCT 60.094 45.455 2.72 0.00 0.00 4.40
26 27 2.030457 GGTTATGAATTCGTCGGTGCTG 59.970 50.000 2.72 0.00 0.00 4.41
27 28 2.927477 GTTATGAATTCGTCGGTGCTGA 59.073 45.455 2.72 0.00 0.00 4.26
28 29 1.645034 ATGAATTCGTCGGTGCTGAG 58.355 50.000 0.04 0.00 0.00 3.35
29 30 1.014044 TGAATTCGTCGGTGCTGAGC 61.014 55.000 0.00 0.00 0.00 4.26
30 31 0.737715 GAATTCGTCGGTGCTGAGCT 60.738 55.000 5.83 0.00 0.00 4.09
31 32 0.320771 AATTCGTCGGTGCTGAGCTT 60.321 50.000 5.83 0.00 0.00 3.74
32 33 1.016130 ATTCGTCGGTGCTGAGCTTG 61.016 55.000 5.83 0.00 0.00 4.01
33 34 3.114616 CGTCGGTGCTGAGCTTGG 61.115 66.667 5.83 0.00 0.00 3.61
34 35 2.743928 GTCGGTGCTGAGCTTGGG 60.744 66.667 5.83 0.00 0.00 4.12
35 36 4.020617 TCGGTGCTGAGCTTGGGG 62.021 66.667 5.83 0.00 0.00 4.96
37 38 4.666253 GGTGCTGAGCTTGGGGCA 62.666 66.667 5.83 0.00 44.79 5.36
38 39 3.060615 GTGCTGAGCTTGGGGCAG 61.061 66.667 5.83 0.00 44.79 4.85
41 42 4.711949 CTGAGCTTGGGGCAGCGT 62.712 66.667 0.00 0.00 45.24 5.07
42 43 4.704833 TGAGCTTGGGGCAGCGTC 62.705 66.667 0.00 0.00 45.24 5.19
43 44 4.704833 GAGCTTGGGGCAGCGTCA 62.705 66.667 0.00 0.00 45.24 4.35
44 45 4.711949 AGCTTGGGGCAGCGTCAG 62.712 66.667 0.00 0.00 45.24 3.51
46 47 3.052082 CTTGGGGCAGCGTCAGTG 61.052 66.667 0.00 0.00 0.00 3.66
52 53 2.177531 GCAGCGTCAGTGCCATTG 59.822 61.111 0.00 0.00 34.67 2.82
53 54 2.620112 GCAGCGTCAGTGCCATTGT 61.620 57.895 0.00 0.00 34.67 2.71
54 55 1.208358 CAGCGTCAGTGCCATTGTG 59.792 57.895 0.00 0.00 34.65 3.33
55 56 1.968017 AGCGTCAGTGCCATTGTGG 60.968 57.895 0.00 0.00 41.55 4.17
56 57 2.981560 GCGTCAGTGCCATTGTGGG 61.982 63.158 0.00 0.00 38.19 4.61
64 65 3.443045 CCATTGTGGGCAGCGGAC 61.443 66.667 0.00 0.00 32.67 4.79
65 66 3.443045 CATTGTGGGCAGCGGACC 61.443 66.667 0.00 0.00 45.44 4.46
101 102 4.662961 CCGACGACTGTGGCAGCA 62.663 66.667 0.00 0.00 34.37 4.41
102 103 3.108289 CGACGACTGTGGCAGCAG 61.108 66.667 13.26 13.26 41.92 4.24
103 104 2.740055 GACGACTGTGGCAGCAGG 60.740 66.667 17.33 6.82 40.59 4.85
104 105 4.320456 ACGACTGTGGCAGCAGGG 62.320 66.667 17.33 12.39 40.59 4.45
105 106 4.007644 CGACTGTGGCAGCAGGGA 62.008 66.667 17.33 0.00 40.59 4.20
106 107 2.673523 GACTGTGGCAGCAGGGAT 59.326 61.111 17.33 1.73 40.59 3.85
107 108 1.748122 GACTGTGGCAGCAGGGATG 60.748 63.158 17.33 0.00 40.59 3.51
108 109 2.439701 CTGTGGCAGCAGGGATGG 60.440 66.667 8.60 0.00 33.11 3.51
109 110 4.051167 TGTGGCAGCAGGGATGGG 62.051 66.667 0.00 0.00 0.00 4.00
112 113 4.891037 GGCAGCAGGGATGGGCTC 62.891 72.222 0.00 0.00 38.56 4.70
114 115 3.473647 CAGCAGGGATGGGCTCGA 61.474 66.667 0.00 0.00 38.56 4.04
115 116 2.447379 AGCAGGGATGGGCTCGAT 60.447 61.111 0.00 0.00 34.76 3.59
116 117 2.031768 GCAGGGATGGGCTCGATC 59.968 66.667 0.00 0.00 0.00 3.69
117 118 2.746359 CAGGGATGGGCTCGATCC 59.254 66.667 0.00 0.00 39.04 3.36
118 119 2.919856 AGGGATGGGCTCGATCCG 60.920 66.667 0.00 0.00 40.47 4.18
119 120 4.008933 GGGATGGGCTCGATCCGG 62.009 72.222 0.00 0.00 40.47 5.14
120 121 4.688966 GGATGGGCTCGATCCGGC 62.689 72.222 0.00 0.00 30.30 6.13
121 122 4.688966 GATGGGCTCGATCCGGCC 62.689 72.222 13.39 13.39 46.89 6.13
125 126 4.593864 GGCTCGATCCGGCCTGTC 62.594 72.222 14.22 0.00 44.48 3.51
126 127 3.838271 GCTCGATCCGGCCTGTCA 61.838 66.667 0.00 0.00 0.00 3.58
127 128 2.105128 CTCGATCCGGCCTGTCAC 59.895 66.667 0.00 0.00 0.00 3.67
128 129 2.678580 TCGATCCGGCCTGTCACA 60.679 61.111 0.00 0.00 0.00 3.58
129 130 2.021068 CTCGATCCGGCCTGTCACAT 62.021 60.000 0.00 0.00 0.00 3.21
130 131 0.753848 TCGATCCGGCCTGTCACATA 60.754 55.000 0.00 0.00 0.00 2.29
131 132 0.318441 CGATCCGGCCTGTCACATAT 59.682 55.000 0.00 0.00 0.00 1.78
132 133 1.800805 GATCCGGCCTGTCACATATG 58.199 55.000 0.00 0.00 0.00 1.78
133 134 1.070758 GATCCGGCCTGTCACATATGT 59.929 52.381 1.41 1.41 0.00 2.29
134 135 0.177836 TCCGGCCTGTCACATATGTG 59.822 55.000 26.83 26.83 46.91 3.21
135 136 0.107703 CCGGCCTGTCACATATGTGT 60.108 55.000 30.03 0.00 45.76 3.72
146 147 2.726821 ACATATGTGTGCTCCTTTGGG 58.273 47.619 7.78 0.00 37.14 4.12
147 148 2.041620 ACATATGTGTGCTCCTTTGGGT 59.958 45.455 7.78 0.00 37.14 4.51
148 149 2.198827 TATGTGTGCTCCTTTGGGTG 57.801 50.000 0.00 0.00 0.00 4.61
153 154 2.747855 GCTCCTTTGGGTGCCGAG 60.748 66.667 0.00 0.00 43.88 4.63
154 155 2.750350 CTCCTTTGGGTGCCGAGT 59.250 61.111 0.00 0.00 0.00 4.18
155 156 1.073199 CTCCTTTGGGTGCCGAGTT 59.927 57.895 0.00 0.00 0.00 3.01
156 157 0.537371 CTCCTTTGGGTGCCGAGTTT 60.537 55.000 0.00 0.00 0.00 2.66
157 158 0.821711 TCCTTTGGGTGCCGAGTTTG 60.822 55.000 0.00 0.00 0.00 2.93
158 159 1.659794 CTTTGGGTGCCGAGTTTGG 59.340 57.895 0.00 0.00 0.00 3.28
159 160 1.805428 CTTTGGGTGCCGAGTTTGGG 61.805 60.000 0.00 0.00 0.00 4.12
160 161 2.285889 TTTGGGTGCCGAGTTTGGGA 62.286 55.000 0.00 0.00 0.00 4.37
161 162 2.075355 TTGGGTGCCGAGTTTGGGAT 62.075 55.000 0.00 0.00 0.00 3.85
162 163 1.749258 GGGTGCCGAGTTTGGGATC 60.749 63.158 0.00 0.00 0.00 3.36
163 164 1.749258 GGTGCCGAGTTTGGGATCC 60.749 63.158 1.92 1.92 0.00 3.36
164 165 1.299976 GTGCCGAGTTTGGGATCCT 59.700 57.895 12.58 0.00 0.00 3.24
165 166 1.026718 GTGCCGAGTTTGGGATCCTG 61.027 60.000 12.58 0.00 0.00 3.86
166 167 1.299976 GCCGAGTTTGGGATCCTGT 59.700 57.895 12.58 0.00 0.00 4.00
167 168 0.322546 GCCGAGTTTGGGATCCTGTT 60.323 55.000 12.58 0.00 0.00 3.16
168 169 1.739067 CCGAGTTTGGGATCCTGTTC 58.261 55.000 12.58 2.32 0.00 3.18
169 170 1.279271 CCGAGTTTGGGATCCTGTTCT 59.721 52.381 12.58 5.78 0.00 3.01
170 171 2.622436 CGAGTTTGGGATCCTGTTCTC 58.378 52.381 12.58 13.15 0.00 2.87
171 172 2.234908 CGAGTTTGGGATCCTGTTCTCT 59.765 50.000 12.58 3.27 0.00 3.10
172 173 3.604582 GAGTTTGGGATCCTGTTCTCTG 58.395 50.000 12.58 0.00 0.00 3.35
173 174 2.982488 AGTTTGGGATCCTGTTCTCTGT 59.018 45.455 12.58 0.00 0.00 3.41
174 175 3.395941 AGTTTGGGATCCTGTTCTCTGTT 59.604 43.478 12.58 0.00 0.00 3.16
175 176 3.423539 TTGGGATCCTGTTCTCTGTTG 57.576 47.619 12.58 0.00 0.00 3.33
176 177 1.630369 TGGGATCCTGTTCTCTGTTGG 59.370 52.381 12.58 0.00 0.00 3.77
177 178 1.630878 GGGATCCTGTTCTCTGTTGGT 59.369 52.381 12.58 0.00 0.00 3.67
178 179 2.616510 GGGATCCTGTTCTCTGTTGGTG 60.617 54.545 12.58 0.00 0.00 4.17
179 180 2.039084 GGATCCTGTTCTCTGTTGGTGT 59.961 50.000 3.84 0.00 0.00 4.16
180 181 2.620251 TCCTGTTCTCTGTTGGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
181 182 1.140852 TCCTGTTCTCTGTTGGTGTGG 59.859 52.381 0.00 0.00 0.00 4.17
182 183 1.597742 CTGTTCTCTGTTGGTGTGGG 58.402 55.000 0.00 0.00 0.00 4.61
183 184 0.182537 TGTTCTCTGTTGGTGTGGGG 59.817 55.000 0.00 0.00 0.00 4.96
184 185 0.472471 GTTCTCTGTTGGTGTGGGGA 59.528 55.000 0.00 0.00 0.00 4.81
185 186 0.764890 TTCTCTGTTGGTGTGGGGAG 59.235 55.000 0.00 0.00 0.00 4.30
186 187 1.127567 TCTCTGTTGGTGTGGGGAGG 61.128 60.000 0.00 0.00 0.00 4.30
187 188 2.282462 CTGTTGGTGTGGGGAGGC 60.282 66.667 0.00 0.00 0.00 4.70
188 189 4.263572 TGTTGGTGTGGGGAGGCG 62.264 66.667 0.00 0.00 0.00 5.52
550 551 4.443934 CTTCGGAGGACAGAGGGT 57.556 61.111 0.00 0.00 0.00 4.34
551 552 1.893786 CTTCGGAGGACAGAGGGTG 59.106 63.158 0.00 0.00 0.00 4.61
552 553 1.608717 CTTCGGAGGACAGAGGGTGG 61.609 65.000 0.00 0.00 0.00 4.61
553 554 3.077556 CGGAGGACAGAGGGTGGG 61.078 72.222 0.00 0.00 0.00 4.61
554 555 2.122954 GGAGGACAGAGGGTGGGT 59.877 66.667 0.00 0.00 0.00 4.51
555 556 2.294078 GGAGGACAGAGGGTGGGTG 61.294 68.421 0.00 0.00 0.00 4.61
556 557 2.203998 AGGACAGAGGGTGGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
557 558 4.035102 GGACAGAGGGTGGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
558 559 4.394712 GACAGAGGGTGGGTGGCG 62.395 72.222 0.00 0.00 0.00 5.69
574 575 4.609018 CGGCGCCGGAGATCCATT 62.609 66.667 40.50 0.00 35.14 3.16
575 576 2.203209 GGCGCCGGAGATCCATTT 60.203 61.111 12.58 0.00 35.14 2.32
576 577 2.254464 GGCGCCGGAGATCCATTTC 61.254 63.158 12.58 0.00 35.14 2.17
577 578 1.523711 GCGCCGGAGATCCATTTCA 60.524 57.895 10.31 0.00 35.14 2.69
578 579 1.776034 GCGCCGGAGATCCATTTCAC 61.776 60.000 10.31 0.00 35.14 3.18
579 580 1.490693 CGCCGGAGATCCATTTCACG 61.491 60.000 5.05 0.00 35.14 4.35
580 581 0.179084 GCCGGAGATCCATTTCACGA 60.179 55.000 5.05 0.00 35.14 4.35
581 582 1.858091 CCGGAGATCCATTTCACGAG 58.142 55.000 0.00 0.00 35.14 4.18
582 583 1.409064 CCGGAGATCCATTTCACGAGA 59.591 52.381 0.00 0.00 35.14 4.04
583 584 2.544694 CCGGAGATCCATTTCACGAGAG 60.545 54.545 0.00 0.00 35.14 3.20
584 585 2.359214 CGGAGATCCATTTCACGAGAGA 59.641 50.000 0.00 0.00 35.14 3.10
585 586 3.181486 CGGAGATCCATTTCACGAGAGAA 60.181 47.826 0.00 0.00 35.14 2.87
586 587 4.116238 GGAGATCCATTTCACGAGAGAAC 58.884 47.826 0.00 0.00 35.64 3.01
587 588 3.775202 AGATCCATTTCACGAGAGAACG 58.225 45.455 0.00 0.00 39.31 3.95
588 589 3.444034 AGATCCATTTCACGAGAGAACGA 59.556 43.478 0.00 0.00 37.03 3.85
589 590 3.217599 TCCATTTCACGAGAGAACGAG 57.782 47.619 0.00 0.00 37.03 4.18
590 591 2.817844 TCCATTTCACGAGAGAACGAGA 59.182 45.455 0.00 0.00 37.03 4.04
591 592 3.254903 TCCATTTCACGAGAGAACGAGAA 59.745 43.478 0.00 0.00 39.92 2.87
594 595 2.701073 TCACGAGAGAACGAGAAACC 57.299 50.000 0.00 0.00 37.03 3.27
595 596 2.228059 TCACGAGAGAACGAGAAACCT 58.772 47.619 0.00 0.00 37.03 3.50
596 597 2.225963 TCACGAGAGAACGAGAAACCTC 59.774 50.000 0.00 0.00 37.03 3.85
597 598 1.540707 ACGAGAGAACGAGAAACCTCC 59.459 52.381 0.00 0.00 37.03 4.30
598 599 1.540267 CGAGAGAACGAGAAACCTCCA 59.460 52.381 0.00 0.00 35.09 3.86
599 600 2.414824 CGAGAGAACGAGAAACCTCCAG 60.415 54.545 0.00 0.00 35.09 3.86
600 601 2.820787 GAGAGAACGAGAAACCTCCAGA 59.179 50.000 0.00 0.00 0.00 3.86
601 602 2.559231 AGAGAACGAGAAACCTCCAGAC 59.441 50.000 0.00 0.00 0.00 3.51
602 603 2.559231 GAGAACGAGAAACCTCCAGACT 59.441 50.000 0.00 0.00 0.00 3.24
603 604 3.757493 GAGAACGAGAAACCTCCAGACTA 59.243 47.826 0.00 0.00 0.00 2.59
604 605 4.345854 AGAACGAGAAACCTCCAGACTAT 58.654 43.478 0.00 0.00 0.00 2.12
605 606 4.399934 AGAACGAGAAACCTCCAGACTATC 59.600 45.833 0.00 0.00 0.00 2.08
606 607 3.025262 ACGAGAAACCTCCAGACTATCC 58.975 50.000 0.00 0.00 0.00 2.59
607 608 2.362717 CGAGAAACCTCCAGACTATCCC 59.637 54.545 0.00 0.00 0.00 3.85
608 609 2.701423 GAGAAACCTCCAGACTATCCCC 59.299 54.545 0.00 0.00 0.00 4.81
609 610 2.319438 AGAAACCTCCAGACTATCCCCT 59.681 50.000 0.00 0.00 0.00 4.79
610 611 2.182516 AACCTCCAGACTATCCCCTG 57.817 55.000 0.00 0.00 0.00 4.45
611 612 1.019650 ACCTCCAGACTATCCCCTGT 58.980 55.000 0.00 0.00 0.00 4.00
612 613 1.366435 ACCTCCAGACTATCCCCTGTT 59.634 52.381 0.00 0.00 0.00 3.16
613 614 2.225908 ACCTCCAGACTATCCCCTGTTT 60.226 50.000 0.00 0.00 0.00 2.83
614 615 2.846827 CCTCCAGACTATCCCCTGTTTT 59.153 50.000 0.00 0.00 0.00 2.43
615 616 3.370953 CCTCCAGACTATCCCCTGTTTTG 60.371 52.174 0.00 0.00 0.00 2.44
616 617 2.576191 TCCAGACTATCCCCTGTTTTGG 59.424 50.000 0.00 0.00 0.00 3.28
617 618 2.308866 CCAGACTATCCCCTGTTTTGGT 59.691 50.000 0.00 0.00 0.00 3.67
618 619 3.347216 CAGACTATCCCCTGTTTTGGTG 58.653 50.000 0.00 0.00 0.00 4.17
619 620 2.308866 AGACTATCCCCTGTTTTGGTGG 59.691 50.000 0.00 0.00 0.00 4.61
620 621 2.041216 GACTATCCCCTGTTTTGGTGGT 59.959 50.000 0.00 0.00 0.00 4.16
621 622 2.449345 ACTATCCCCTGTTTTGGTGGTT 59.551 45.455 0.00 0.00 0.00 3.67
622 623 1.715785 ATCCCCTGTTTTGGTGGTTG 58.284 50.000 0.00 0.00 0.00 3.77
623 624 0.397816 TCCCCTGTTTTGGTGGTTGG 60.398 55.000 0.00 0.00 0.00 3.77
624 625 0.689412 CCCCTGTTTTGGTGGTTGGT 60.689 55.000 0.00 0.00 0.00 3.67
625 626 1.199615 CCCTGTTTTGGTGGTTGGTT 58.800 50.000 0.00 0.00 0.00 3.67
626 627 1.138069 CCCTGTTTTGGTGGTTGGTTC 59.862 52.381 0.00 0.00 0.00 3.62
627 628 1.202359 CCTGTTTTGGTGGTTGGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
628 629 0.818296 TGTTTTGGTGGTTGGTTCGG 59.182 50.000 0.00 0.00 0.00 4.30
629 630 0.528901 GTTTTGGTGGTTGGTTCGGC 60.529 55.000 0.00 0.00 0.00 5.54
630 631 0.970937 TTTTGGTGGTTGGTTCGGCA 60.971 50.000 0.00 0.00 0.00 5.69
631 632 1.668101 TTTGGTGGTTGGTTCGGCAC 61.668 55.000 0.00 0.00 0.00 5.01
632 633 2.517402 GGTGGTTGGTTCGGCACA 60.517 61.111 0.00 0.00 0.00 4.57
633 634 2.122167 GGTGGTTGGTTCGGCACAA 61.122 57.895 0.00 0.00 0.00 3.33
634 635 1.065109 GTGGTTGGTTCGGCACAAC 59.935 57.895 8.01 8.01 34.19 3.32
635 636 1.378646 TGGTTGGTTCGGCACAACA 60.379 52.632 15.27 0.00 34.19 3.33
636 637 0.753479 TGGTTGGTTCGGCACAACAT 60.753 50.000 15.27 0.00 34.19 2.71
637 638 0.318614 GGTTGGTTCGGCACAACATG 60.319 55.000 15.27 0.00 34.19 3.21
638 639 0.383949 GTTGGTTCGGCACAACATGT 59.616 50.000 0.00 0.00 34.19 3.21
639 640 0.665835 TTGGTTCGGCACAACATGTC 59.334 50.000 0.00 0.00 0.00 3.06
640 641 0.179032 TGGTTCGGCACAACATGTCT 60.179 50.000 0.00 0.00 0.00 3.41
641 642 0.517316 GGTTCGGCACAACATGTCTC 59.483 55.000 0.00 0.00 0.00 3.36
642 643 1.225855 GTTCGGCACAACATGTCTCA 58.774 50.000 0.00 0.00 0.00 3.27
643 644 1.195448 GTTCGGCACAACATGTCTCAG 59.805 52.381 0.00 0.00 0.00 3.35
644 645 0.392706 TCGGCACAACATGTCTCAGT 59.607 50.000 0.00 0.00 0.00 3.41
645 646 0.792640 CGGCACAACATGTCTCAGTC 59.207 55.000 0.00 0.00 0.00 3.51
646 647 1.160137 GGCACAACATGTCTCAGTCC 58.840 55.000 0.00 0.00 0.00 3.85
647 648 1.160137 GCACAACATGTCTCAGTCCC 58.840 55.000 0.00 0.00 0.00 4.46
648 649 1.432514 CACAACATGTCTCAGTCCCG 58.567 55.000 0.00 0.00 0.00 5.14
649 650 0.321671 ACAACATGTCTCAGTCCCGG 59.678 55.000 0.00 0.00 0.00 5.73
650 651 0.321671 CAACATGTCTCAGTCCCGGT 59.678 55.000 0.00 0.00 0.00 5.28
651 652 0.608640 AACATGTCTCAGTCCCGGTC 59.391 55.000 0.00 0.00 0.00 4.79
652 653 0.251832 ACATGTCTCAGTCCCGGTCT 60.252 55.000 0.00 0.00 0.00 3.85
653 654 0.457851 CATGTCTCAGTCCCGGTCTC 59.542 60.000 0.00 0.00 0.00 3.36
654 655 0.039764 ATGTCTCAGTCCCGGTCTCA 59.960 55.000 0.00 0.00 0.00 3.27
655 656 0.178973 TGTCTCAGTCCCGGTCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
656 657 0.244178 GTCTCAGTCCCGGTCTCAAC 59.756 60.000 0.00 0.00 0.00 3.18
657 658 0.898789 TCTCAGTCCCGGTCTCAACC 60.899 60.000 0.00 0.00 42.66 3.77
658 659 1.152419 TCAGTCCCGGTCTCAACCA 60.152 57.895 0.00 0.00 46.86 3.67
659 660 0.544357 TCAGTCCCGGTCTCAACCAT 60.544 55.000 0.00 0.00 46.86 3.55
660 661 1.191535 CAGTCCCGGTCTCAACCATA 58.808 55.000 0.00 0.00 46.86 2.74
661 662 1.137086 CAGTCCCGGTCTCAACCATAG 59.863 57.143 0.00 0.00 46.86 2.23
662 663 1.006758 AGTCCCGGTCTCAACCATAGA 59.993 52.381 0.00 0.00 46.86 1.98
663 664 2.040178 GTCCCGGTCTCAACCATAGAT 58.960 52.381 0.00 0.00 46.86 1.98
664 665 2.434702 GTCCCGGTCTCAACCATAGATT 59.565 50.000 0.00 0.00 46.86 2.40
665 666 2.698797 TCCCGGTCTCAACCATAGATTC 59.301 50.000 0.00 0.00 46.86 2.52
666 667 2.545952 CCCGGTCTCAACCATAGATTCG 60.546 54.545 0.00 0.00 46.86 3.34
667 668 2.361119 CCGGTCTCAACCATAGATTCGA 59.639 50.000 0.00 0.00 46.86 3.71
668 669 3.551046 CCGGTCTCAACCATAGATTCGAG 60.551 52.174 0.00 0.00 46.86 4.04
669 670 3.315470 CGGTCTCAACCATAGATTCGAGA 59.685 47.826 0.00 0.00 46.86 4.04
670 671 4.022762 CGGTCTCAACCATAGATTCGAGAT 60.023 45.833 0.00 0.00 46.86 2.75
671 672 5.465935 GGTCTCAACCATAGATTCGAGATC 58.534 45.833 0.00 0.00 45.68 2.75
672 673 5.150683 GTCTCAACCATAGATTCGAGATCG 58.849 45.833 0.00 0.00 41.45 3.69
673 674 4.216472 TCTCAACCATAGATTCGAGATCGG 59.784 45.833 1.91 0.00 40.29 4.18
674 675 4.142038 TCAACCATAGATTCGAGATCGGA 58.858 43.478 1.91 0.00 40.29 4.55
675 676 4.767409 TCAACCATAGATTCGAGATCGGAT 59.233 41.667 1.91 0.00 40.91 4.18
676 677 4.710423 ACCATAGATTCGAGATCGGATG 57.290 45.455 0.00 12.83 37.77 3.51
677 678 3.445450 ACCATAGATTCGAGATCGGATGG 59.555 47.826 23.68 23.68 37.77 3.51
678 679 3.445450 CCATAGATTCGAGATCGGATGGT 59.555 47.826 20.81 0.00 37.77 3.55
679 680 4.439426 CCATAGATTCGAGATCGGATGGTC 60.439 50.000 20.81 0.00 37.77 4.02
680 681 1.889829 AGATTCGAGATCGGATGGTCC 59.110 52.381 0.00 0.00 37.77 4.46
681 682 1.613925 GATTCGAGATCGGATGGTCCA 59.386 52.381 0.00 0.00 37.77 4.02
682 683 1.704641 TTCGAGATCGGATGGTCCAT 58.295 50.000 3.26 3.26 35.91 3.41
683 684 2.579410 TCGAGATCGGATGGTCCATA 57.421 50.000 3.72 0.00 35.91 2.74
684 685 2.871453 TCGAGATCGGATGGTCCATAA 58.129 47.619 3.72 0.00 35.91 1.90
685 686 2.820197 TCGAGATCGGATGGTCCATAAG 59.180 50.000 3.72 1.92 35.91 1.73
686 687 2.094494 CGAGATCGGATGGTCCATAAGG 60.094 54.545 3.72 0.00 35.91 2.69
687 688 1.625818 AGATCGGATGGTCCATAAGGC 59.374 52.381 3.72 0.00 35.91 4.35
688 689 0.693049 ATCGGATGGTCCATAAGGCC 59.307 55.000 3.72 0.00 35.91 5.19
689 690 1.073199 CGGATGGTCCATAAGGCCC 59.927 63.158 3.72 0.07 35.91 5.80
690 691 1.073199 GGATGGTCCATAAGGCCCG 59.927 63.158 3.72 0.00 36.28 6.13
691 692 1.415672 GGATGGTCCATAAGGCCCGA 61.416 60.000 3.72 0.00 36.28 5.14
692 693 0.472471 GATGGTCCATAAGGCCCGAA 59.528 55.000 3.72 0.00 32.17 4.30
693 694 0.474184 ATGGTCCATAAGGCCCGAAG 59.526 55.000 1.24 0.00 32.17 3.79
705 706 4.641645 CCGAAGGCAGGCACACCA 62.642 66.667 0.00 0.00 46.14 4.17
706 707 2.360350 CGAAGGCAGGCACACCAT 60.360 61.111 0.00 0.00 39.06 3.55
707 708 2.401766 CGAAGGCAGGCACACCATC 61.402 63.158 0.00 0.00 39.06 3.51
708 709 1.303561 GAAGGCAGGCACACCATCA 60.304 57.895 0.00 0.00 39.06 3.07
709 710 0.682209 GAAGGCAGGCACACCATCAT 60.682 55.000 0.00 0.00 39.06 2.45
710 711 0.682209 AAGGCAGGCACACCATCATC 60.682 55.000 0.00 0.00 39.06 2.92
711 712 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
712 713 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
713 714 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
714 715 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
715 716 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
716 717 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
717 718 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
718 719 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
719 720 1.733912 CACACCATCATCACCAACTCG 59.266 52.381 0.00 0.00 0.00 4.18
720 721 0.729116 CACCATCATCACCAACTCGC 59.271 55.000 0.00 0.00 0.00 5.03
721 722 0.324614 ACCATCATCACCAACTCGCA 59.675 50.000 0.00 0.00 0.00 5.10
722 723 1.065199 ACCATCATCACCAACTCGCAT 60.065 47.619 0.00 0.00 0.00 4.73
723 724 2.019249 CCATCATCACCAACTCGCATT 58.981 47.619 0.00 0.00 0.00 3.56
724 725 2.424601 CCATCATCACCAACTCGCATTT 59.575 45.455 0.00 0.00 0.00 2.32
725 726 3.119388 CCATCATCACCAACTCGCATTTT 60.119 43.478 0.00 0.00 0.00 1.82
726 727 4.487948 CATCATCACCAACTCGCATTTTT 58.512 39.130 0.00 0.00 0.00 1.94
727 728 5.392919 CCATCATCACCAACTCGCATTTTTA 60.393 40.000 0.00 0.00 0.00 1.52
728 729 5.895636 TCATCACCAACTCGCATTTTTAT 57.104 34.783 0.00 0.00 0.00 1.40
729 730 6.993786 TCATCACCAACTCGCATTTTTATA 57.006 33.333 0.00 0.00 0.00 0.98
730 731 7.015226 TCATCACCAACTCGCATTTTTATAG 57.985 36.000 0.00 0.00 0.00 1.31
731 732 6.821160 TCATCACCAACTCGCATTTTTATAGA 59.179 34.615 0.00 0.00 0.00 1.98
732 733 7.335673 TCATCACCAACTCGCATTTTTATAGAA 59.664 33.333 0.00 0.00 0.00 2.10
733 734 7.072177 TCACCAACTCGCATTTTTATAGAAG 57.928 36.000 0.00 0.00 0.00 2.85
734 735 6.653320 TCACCAACTCGCATTTTTATAGAAGT 59.347 34.615 0.00 0.00 0.00 3.01
735 736 7.820386 TCACCAACTCGCATTTTTATAGAAGTA 59.180 33.333 0.00 0.00 0.00 2.24
736 737 8.116753 CACCAACTCGCATTTTTATAGAAGTAG 58.883 37.037 0.00 0.00 0.00 2.57
737 738 8.038944 ACCAACTCGCATTTTTATAGAAGTAGA 58.961 33.333 0.00 0.00 0.00 2.59
738 739 8.543774 CCAACTCGCATTTTTATAGAAGTAGAG 58.456 37.037 0.00 0.00 0.00 2.43
768 769 3.000724 GTCTCTTTCATTTGCCTCGATCG 59.999 47.826 9.36 9.36 0.00 3.69
777 778 2.510012 CCTCGATCGCAGCAGCAA 60.510 61.111 11.09 0.00 42.27 3.91
778 779 2.699809 CTCGATCGCAGCAGCAAC 59.300 61.111 11.09 0.00 42.27 4.17
779 780 2.048316 TCGATCGCAGCAGCAACA 60.048 55.556 11.09 0.00 42.27 3.33
805 806 1.464023 CCGTCGCACACATGATGAAAC 60.464 52.381 0.00 0.00 0.00 2.78
827 828 3.629398 CCTTTGATGAGGGAGGAATTTCG 59.371 47.826 0.00 0.00 32.94 3.46
907 919 0.179156 GAATTGTCACAGGCCATGCG 60.179 55.000 5.01 0.00 0.00 4.73
908 1041 0.608856 AATTGTCACAGGCCATGCGA 60.609 50.000 5.01 0.00 0.00 5.10
916 1049 1.303561 AGGCCATGCGATGTTGTGT 60.304 52.632 5.01 0.00 0.00 3.72
917 1050 1.153978 GGCCATGCGATGTTGTGTG 60.154 57.895 0.00 0.00 0.00 3.82
918 1051 1.580942 GCCATGCGATGTTGTGTGT 59.419 52.632 0.00 0.00 0.00 3.72
919 1052 0.454957 GCCATGCGATGTTGTGTGTC 60.455 55.000 0.00 0.00 0.00 3.67
920 1053 0.168788 CCATGCGATGTTGTGTGTCC 59.831 55.000 0.00 0.00 0.00 4.02
921 1054 0.873721 CATGCGATGTTGTGTGTCCA 59.126 50.000 0.00 0.00 0.00 4.02
922 1055 1.266446 CATGCGATGTTGTGTGTCCAA 59.734 47.619 0.00 0.00 0.00 3.53
923 1056 0.660488 TGCGATGTTGTGTGTCCAAC 59.340 50.000 0.00 0.00 43.95 3.77
966 2159 5.751509 GGGCGGCGAGAAAATAAAATAAAAT 59.248 36.000 12.98 0.00 0.00 1.82
1056 2262 0.997196 CAGTAAAAGTAGCGACCGGC 59.003 55.000 0.00 0.00 44.05 6.13
1074 2280 1.886542 GGCTTCCCGAATCACAAGTTT 59.113 47.619 0.00 0.00 0.00 2.66
1076 2282 2.095212 GCTTCCCGAATCACAAGTTTCC 60.095 50.000 0.00 0.00 0.00 3.13
1102 2308 1.696336 AGGGATCAACCATGGAGATCG 59.304 52.381 28.81 12.46 39.17 3.69
1181 2387 1.800713 GCCGAGTTTCTCCGTCGAC 60.801 63.158 5.18 5.18 35.70 4.20
1182 2388 1.511464 CCGAGTTTCTCCGTCGACG 60.511 63.158 30.33 30.33 35.70 5.12
1183 2389 1.494628 CGAGTTTCTCCGTCGACGA 59.505 57.895 37.65 22.12 43.02 4.20
1184 2390 0.110509 CGAGTTTCTCCGTCGACGAA 60.111 55.000 37.65 19.79 43.02 3.85
1185 2391 1.604396 GAGTTTCTCCGTCGACGAAG 58.396 55.000 37.65 29.02 43.02 3.79
1186 2392 0.386985 AGTTTCTCCGTCGACGAAGC 60.387 55.000 37.65 24.54 43.02 3.86
1187 2393 1.080974 TTTCTCCGTCGACGAAGCC 60.081 57.895 37.65 0.00 43.02 4.35
1188 2394 1.798234 TTTCTCCGTCGACGAAGCCA 61.798 55.000 37.65 15.47 43.02 4.75
1189 2395 1.798234 TTCTCCGTCGACGAAGCCAA 61.798 55.000 37.65 16.68 43.02 4.52
1221 2427 3.633116 CCTCACCCGAACCCCGTT 61.633 66.667 0.00 0.00 36.31 4.44
1410 2616 1.226030 GCTTCGCCAACTACAACCGT 61.226 55.000 0.00 0.00 0.00 4.83
1545 2751 2.377310 GCTACGGCGTTTCAGCGAA 61.377 57.895 21.24 0.00 38.18 4.70
1560 2766 2.257676 GAAGACGTCCTCGCCGTT 59.742 61.111 13.01 0.00 38.92 4.44
1595 2801 2.202932 CCTGCCGTTCCTCGATGG 60.203 66.667 0.00 0.00 42.86 3.51
2536 3742 0.321653 CCTTCGGAGGTTCAGGTTGG 60.322 60.000 0.00 0.00 38.32 3.77
2629 3835 2.338785 GGGCTTCAAGTGCAGCTCC 61.339 63.158 3.02 0.00 34.71 4.70
2731 3937 6.751514 TCAAATGCGACCAATAATTACAGT 57.248 33.333 0.00 0.00 0.00 3.55
2833 4039 1.315257 GCCCACACGCCTGAATGATT 61.315 55.000 0.00 0.00 0.00 2.57
2889 4096 0.251121 ATGGATTTGGTGTGCCACGA 60.251 50.000 0.00 0.00 46.01 4.35
3032 4243 1.606668 GTGTGGGCGAACTGATTTTCA 59.393 47.619 0.00 0.00 0.00 2.69
3040 4251 2.616376 CGAACTGATTTTCACCCACACA 59.384 45.455 0.00 0.00 0.00 3.72
3047 4259 4.221703 TGATTTTCACCCACACAACACTTT 59.778 37.500 0.00 0.00 0.00 2.66
3119 4335 4.510038 ACATGGCAACTGTGATTCTTTC 57.490 40.909 0.00 0.00 37.61 2.62
3158 4374 2.972144 GCGCGTATGTGGCAACCAA 61.972 57.895 8.43 0.00 34.18 3.67
3167 4383 3.085443 TGTGGCAACCAAATAAACACG 57.915 42.857 0.00 0.00 34.18 4.49
3180 4396 2.014064 AAACACGCATGGCAACTGCA 62.014 50.000 13.04 0.00 44.36 4.41
3193 4409 4.522405 TGGCAACTGCAATTAACTGTACAT 59.478 37.500 3.76 0.00 44.36 2.29
3194 4410 4.858692 GGCAACTGCAATTAACTGTACATG 59.141 41.667 3.76 0.00 44.36 3.21
3195 4411 4.858692 GCAACTGCAATTAACTGTACATGG 59.141 41.667 0.00 0.00 41.59 3.66
3196 4412 4.701956 ACTGCAATTAACTGTACATGGC 57.298 40.909 0.00 0.00 0.00 4.40
3197 4413 4.078537 ACTGCAATTAACTGTACATGGCA 58.921 39.130 0.00 0.00 0.00 4.92
3198 4414 4.522405 ACTGCAATTAACTGTACATGGCAA 59.478 37.500 0.00 0.00 0.00 4.52
3199 4415 4.804108 TGCAATTAACTGTACATGGCAAC 58.196 39.130 0.00 0.00 0.00 4.17
3200 4416 4.522405 TGCAATTAACTGTACATGGCAACT 59.478 37.500 0.00 0.00 37.61 3.16
3201 4417 5.707764 TGCAATTAACTGTACATGGCAACTA 59.292 36.000 0.00 0.00 37.61 2.24
3202 4418 6.376864 TGCAATTAACTGTACATGGCAACTAT 59.623 34.615 0.00 0.00 37.61 2.12
3203 4419 6.692681 GCAATTAACTGTACATGGCAACTATG 59.307 38.462 0.00 0.00 37.61 2.23
3204 4420 6.942532 ATTAACTGTACATGGCAACTATGG 57.057 37.500 0.00 0.00 37.61 2.74
3205 4421 4.301072 AACTGTACATGGCAACTATGGT 57.699 40.909 0.00 0.00 37.61 3.55
3206 4422 4.301072 ACTGTACATGGCAACTATGGTT 57.699 40.909 0.00 0.00 35.86 3.67
3237 4477 3.180980 CGTGACAACTAGGTAAACACACG 59.819 47.826 0.00 0.00 41.28 4.49
3309 4599 7.173218 CGGCAACTACCATAAATTAGACATGAT 59.827 37.037 0.00 0.00 0.00 2.45
3368 4660 5.494632 ACTTTTACAACTACACTTGCCAC 57.505 39.130 0.00 0.00 0.00 5.01
3469 4766 2.223688 TGTGGACATTTTTGCTTCGTGG 60.224 45.455 0.00 0.00 0.00 4.94
3542 4840 2.534019 CGACGCCCATATGTGTGGC 61.534 63.158 10.52 10.52 37.96 5.01
3629 4927 1.906574 TGACCAGATCCTTTAACGCCT 59.093 47.619 0.00 0.00 0.00 5.52
3650 4948 4.728102 CGTGTGGGCGCGTCCTTA 62.728 66.667 32.34 17.10 42.94 2.69
3651 4949 2.357760 GTGTGGGCGCGTCCTTAA 60.358 61.111 32.34 13.64 34.39 1.85
3652 4950 2.047655 TGTGGGCGCGTCCTTAAG 60.048 61.111 32.34 0.00 34.39 1.85
3653 4951 2.047560 GTGGGCGCGTCCTTAAGT 60.048 61.111 32.34 0.00 34.39 2.24
3654 4952 1.670083 GTGGGCGCGTCCTTAAGTT 60.670 57.895 32.34 0.00 34.39 2.66
3655 4953 1.071814 TGGGCGCGTCCTTAAGTTT 59.928 52.632 32.34 0.00 34.39 2.66
3656 4954 0.535553 TGGGCGCGTCCTTAAGTTTT 60.536 50.000 32.34 0.00 34.39 2.43
3657 4955 0.109919 GGGCGCGTCCTTAAGTTTTG 60.110 55.000 25.46 0.00 34.39 2.44
3658 4956 0.869730 GGCGCGTCCTTAAGTTTTGA 59.130 50.000 8.43 0.00 0.00 2.69
3659 4957 1.467342 GGCGCGTCCTTAAGTTTTGAT 59.533 47.619 8.43 0.00 0.00 2.57
3660 4958 2.475685 GGCGCGTCCTTAAGTTTTGATC 60.476 50.000 8.43 0.00 0.00 2.92
3661 4959 2.158841 GCGCGTCCTTAAGTTTTGATCA 59.841 45.455 8.43 0.00 0.00 2.92
3662 4960 3.364565 GCGCGTCCTTAAGTTTTGATCAA 60.365 43.478 8.43 3.38 0.00 2.57
3663 4961 4.778904 CGCGTCCTTAAGTTTTGATCAAA 58.221 39.130 16.91 16.91 0.00 2.69
3664 4962 5.390613 CGCGTCCTTAAGTTTTGATCAAAT 58.609 37.500 21.10 9.60 0.00 2.32
3665 4963 5.856455 CGCGTCCTTAAGTTTTGATCAAATT 59.144 36.000 21.10 15.40 0.00 1.82
3666 4964 6.362283 CGCGTCCTTAAGTTTTGATCAAATTT 59.638 34.615 21.10 18.88 0.00 1.82
3667 4965 7.535940 CGCGTCCTTAAGTTTTGATCAAATTTA 59.464 33.333 21.10 18.00 0.00 1.40
3668 4966 9.353999 GCGTCCTTAAGTTTTGATCAAATTTAT 57.646 29.630 21.10 10.68 29.39 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.332028 CGACGAATTCATAACCTGCGC 60.332 52.381 0.00 0.00 0.00 6.09
2 3 2.030457 CACCGACGAATTCATAACCTGC 59.970 50.000 6.22 0.00 0.00 4.85
3 4 2.030457 GCACCGACGAATTCATAACCTG 59.970 50.000 6.22 0.00 0.00 4.00
6 7 2.927477 TCAGCACCGACGAATTCATAAC 59.073 45.455 6.22 0.00 0.00 1.89
8 9 2.809446 CTCAGCACCGACGAATTCATA 58.191 47.619 6.22 0.00 0.00 2.15
9 10 1.645034 CTCAGCACCGACGAATTCAT 58.355 50.000 6.22 0.00 0.00 2.57
10 11 1.014044 GCTCAGCACCGACGAATTCA 61.014 55.000 6.22 0.00 0.00 2.57
11 12 0.737715 AGCTCAGCACCGACGAATTC 60.738 55.000 0.00 0.00 0.00 2.17
12 13 0.320771 AAGCTCAGCACCGACGAATT 60.321 50.000 0.00 0.00 0.00 2.17
13 14 1.016130 CAAGCTCAGCACCGACGAAT 61.016 55.000 0.00 0.00 0.00 3.34
14 15 1.664649 CAAGCTCAGCACCGACGAA 60.665 57.895 0.00 0.00 0.00 3.85
15 16 2.049156 CAAGCTCAGCACCGACGA 60.049 61.111 0.00 0.00 0.00 4.20
16 17 3.114616 CCAAGCTCAGCACCGACG 61.115 66.667 0.00 0.00 0.00 5.12
17 18 2.743928 CCCAAGCTCAGCACCGAC 60.744 66.667 0.00 0.00 0.00 4.79
18 19 4.020617 CCCCAAGCTCAGCACCGA 62.021 66.667 0.00 0.00 0.00 4.69
20 21 4.666253 TGCCCCAAGCTCAGCACC 62.666 66.667 0.00 0.00 44.23 5.01
21 22 3.060615 CTGCCCCAAGCTCAGCAC 61.061 66.667 0.00 0.00 44.23 4.40
24 25 4.711949 ACGCTGCCCCAAGCTCAG 62.712 66.667 0.00 0.00 44.23 3.35
25 26 4.704833 GACGCTGCCCCAAGCTCA 62.705 66.667 0.00 0.00 44.23 4.26
26 27 4.704833 TGACGCTGCCCCAAGCTC 62.705 66.667 0.00 0.00 44.23 4.09
27 28 4.711949 CTGACGCTGCCCCAAGCT 62.712 66.667 0.00 0.00 44.23 3.74
29 30 3.052082 CACTGACGCTGCCCCAAG 61.052 66.667 0.00 0.00 0.00 3.61
35 36 2.177531 CAATGGCACTGACGCTGC 59.822 61.111 0.00 0.00 0.00 5.25
36 37 1.208358 CACAATGGCACTGACGCTG 59.792 57.895 1.60 0.00 0.00 5.18
37 38 1.968017 CCACAATGGCACTGACGCT 60.968 57.895 1.60 0.00 0.00 5.07
38 39 2.562912 CCACAATGGCACTGACGC 59.437 61.111 1.60 0.00 0.00 5.19
39 40 3.266964 CCCACAATGGCACTGACG 58.733 61.111 1.60 0.00 35.79 4.35
47 48 3.443045 GTCCGCTGCCCACAATGG 61.443 66.667 0.00 0.00 37.25 3.16
48 49 3.443045 GGTCCGCTGCCCACAATG 61.443 66.667 0.00 0.00 0.00 2.82
84 85 4.662961 TGCTGCCACAGTCGTCGG 62.663 66.667 0.00 0.00 33.43 4.79
85 86 3.108289 CTGCTGCCACAGTCGTCG 61.108 66.667 0.00 0.00 33.43 5.12
86 87 2.740055 CCTGCTGCCACAGTCGTC 60.740 66.667 0.00 0.00 35.83 4.20
87 88 4.320456 CCCTGCTGCCACAGTCGT 62.320 66.667 0.00 0.00 35.83 4.34
88 89 3.320879 ATCCCTGCTGCCACAGTCG 62.321 63.158 0.00 0.00 35.83 4.18
89 90 1.748122 CATCCCTGCTGCCACAGTC 60.748 63.158 0.00 0.00 35.83 3.51
90 91 2.353958 CATCCCTGCTGCCACAGT 59.646 61.111 0.00 0.00 35.83 3.55
91 92 2.439701 CCATCCCTGCTGCCACAG 60.440 66.667 0.00 0.00 37.42 3.66
92 93 4.051167 CCCATCCCTGCTGCCACA 62.051 66.667 0.00 0.00 0.00 4.17
95 96 4.891037 GAGCCCATCCCTGCTGCC 62.891 72.222 0.00 0.00 38.11 4.85
97 98 2.728443 GATCGAGCCCATCCCTGCTG 62.728 65.000 0.00 0.00 38.11 4.41
98 99 2.447379 ATCGAGCCCATCCCTGCT 60.447 61.111 0.00 0.00 41.42 4.24
99 100 2.031768 GATCGAGCCCATCCCTGC 59.968 66.667 0.00 0.00 0.00 4.85
100 101 2.746359 GGATCGAGCCCATCCCTG 59.254 66.667 9.02 0.00 34.68 4.45
101 102 2.919856 CGGATCGAGCCCATCCCT 60.920 66.667 15.35 0.00 37.14 4.20
102 103 4.008933 CCGGATCGAGCCCATCCC 62.009 72.222 15.35 0.00 37.14 3.85
103 104 4.688966 GCCGGATCGAGCCCATCC 62.689 72.222 15.35 2.63 37.10 3.51
104 105 4.688966 GGCCGGATCGAGCCCATC 62.689 72.222 15.35 2.92 43.76 3.51
109 110 3.838271 TGACAGGCCGGATCGAGC 61.838 66.667 10.86 0.00 0.00 5.03
110 111 2.021068 ATGTGACAGGCCGGATCGAG 62.021 60.000 10.86 0.00 0.00 4.04
111 112 0.753848 TATGTGACAGGCCGGATCGA 60.754 55.000 10.86 0.00 0.00 3.59
112 113 0.318441 ATATGTGACAGGCCGGATCG 59.682 55.000 10.86 0.00 0.00 3.69
113 114 1.070758 ACATATGTGACAGGCCGGATC 59.929 52.381 10.86 3.14 0.00 3.36
114 115 1.131638 ACATATGTGACAGGCCGGAT 58.868 50.000 10.86 0.00 0.00 4.18
115 116 2.602890 ACATATGTGACAGGCCGGA 58.397 52.632 10.86 0.00 0.00 5.14
126 127 2.041620 ACCCAAAGGAGCACACATATGT 59.958 45.455 1.41 1.41 36.73 2.29
127 128 2.424601 CACCCAAAGGAGCACACATATG 59.575 50.000 0.00 0.00 36.73 1.78
128 129 2.726821 CACCCAAAGGAGCACACATAT 58.273 47.619 0.00 0.00 36.73 1.78
129 130 2.198827 CACCCAAAGGAGCACACATA 57.801 50.000 0.00 0.00 36.73 2.29
130 131 3.040965 CACCCAAAGGAGCACACAT 57.959 52.632 0.00 0.00 36.73 3.21
131 132 4.577152 CACCCAAAGGAGCACACA 57.423 55.556 0.00 0.00 36.73 3.72
137 138 0.537371 AAACTCGGCACCCAAAGGAG 60.537 55.000 0.00 0.00 36.73 3.69
138 139 0.821711 CAAACTCGGCACCCAAAGGA 60.822 55.000 0.00 0.00 36.73 3.36
139 140 1.659794 CAAACTCGGCACCCAAAGG 59.340 57.895 0.00 0.00 40.04 3.11
140 141 1.659794 CCAAACTCGGCACCCAAAG 59.340 57.895 0.00 0.00 0.00 2.77
141 142 1.830408 CCCAAACTCGGCACCCAAA 60.830 57.895 0.00 0.00 0.00 3.28
142 143 2.075355 ATCCCAAACTCGGCACCCAA 62.075 55.000 0.00 0.00 0.00 4.12
143 144 2.478335 GATCCCAAACTCGGCACCCA 62.478 60.000 0.00 0.00 0.00 4.51
144 145 1.749258 GATCCCAAACTCGGCACCC 60.749 63.158 0.00 0.00 0.00 4.61
145 146 1.749258 GGATCCCAAACTCGGCACC 60.749 63.158 0.00 0.00 0.00 5.01
146 147 1.026718 CAGGATCCCAAACTCGGCAC 61.027 60.000 8.55 0.00 0.00 5.01
147 148 1.299648 CAGGATCCCAAACTCGGCA 59.700 57.895 8.55 0.00 0.00 5.69
148 149 0.322546 AACAGGATCCCAAACTCGGC 60.323 55.000 8.55 0.00 0.00 5.54
149 150 1.279271 AGAACAGGATCCCAAACTCGG 59.721 52.381 8.55 0.00 0.00 4.63
150 151 2.234908 AGAGAACAGGATCCCAAACTCG 59.765 50.000 8.55 0.00 0.00 4.18
151 152 3.008485 ACAGAGAACAGGATCCCAAACTC 59.992 47.826 8.55 12.56 0.00 3.01
152 153 2.982488 ACAGAGAACAGGATCCCAAACT 59.018 45.455 8.55 3.37 0.00 2.66
153 154 3.425162 ACAGAGAACAGGATCCCAAAC 57.575 47.619 8.55 0.00 0.00 2.93
154 155 3.498481 CCAACAGAGAACAGGATCCCAAA 60.498 47.826 8.55 0.00 0.00 3.28
155 156 2.040278 CCAACAGAGAACAGGATCCCAA 59.960 50.000 8.55 0.00 0.00 4.12
156 157 1.630369 CCAACAGAGAACAGGATCCCA 59.370 52.381 8.55 0.00 0.00 4.37
157 158 1.630878 ACCAACAGAGAACAGGATCCC 59.369 52.381 8.55 0.00 0.00 3.85
158 159 2.039084 ACACCAACAGAGAACAGGATCC 59.961 50.000 2.48 2.48 0.00 3.36
159 160 3.070018 CACACCAACAGAGAACAGGATC 58.930 50.000 0.00 0.00 0.00 3.36
160 161 2.224621 CCACACCAACAGAGAACAGGAT 60.225 50.000 0.00 0.00 0.00 3.24
161 162 1.140852 CCACACCAACAGAGAACAGGA 59.859 52.381 0.00 0.00 0.00 3.86
162 163 1.597742 CCACACCAACAGAGAACAGG 58.402 55.000 0.00 0.00 0.00 4.00
163 164 1.597742 CCCACACCAACAGAGAACAG 58.402 55.000 0.00 0.00 0.00 3.16
164 165 0.182537 CCCCACACCAACAGAGAACA 59.817 55.000 0.00 0.00 0.00 3.18
165 166 0.472471 TCCCCACACCAACAGAGAAC 59.528 55.000 0.00 0.00 0.00 3.01
166 167 0.764890 CTCCCCACACCAACAGAGAA 59.235 55.000 0.00 0.00 0.00 2.87
167 168 1.127567 CCTCCCCACACCAACAGAGA 61.128 60.000 0.00 0.00 0.00 3.10
168 169 1.376466 CCTCCCCACACCAACAGAG 59.624 63.158 0.00 0.00 0.00 3.35
169 170 2.829384 GCCTCCCCACACCAACAGA 61.829 63.158 0.00 0.00 0.00 3.41
170 171 2.282462 GCCTCCCCACACCAACAG 60.282 66.667 0.00 0.00 0.00 3.16
171 172 4.263572 CGCCTCCCCACACCAACA 62.264 66.667 0.00 0.00 0.00 3.33
533 534 1.608717 CCACCCTCTGTCCTCCGAAG 61.609 65.000 0.00 0.00 0.00 3.79
534 535 1.609501 CCACCCTCTGTCCTCCGAA 60.610 63.158 0.00 0.00 0.00 4.30
535 536 2.037367 CCACCCTCTGTCCTCCGA 59.963 66.667 0.00 0.00 0.00 4.55
536 537 3.077556 CCCACCCTCTGTCCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
537 538 2.122954 ACCCACCCTCTGTCCTCC 59.877 66.667 0.00 0.00 0.00 4.30
538 539 2.294078 CCACCCACCCTCTGTCCTC 61.294 68.421 0.00 0.00 0.00 3.71
539 540 2.203998 CCACCCACCCTCTGTCCT 60.204 66.667 0.00 0.00 0.00 3.85
540 541 4.035102 GCCACCCACCCTCTGTCC 62.035 72.222 0.00 0.00 0.00 4.02
541 542 4.394712 CGCCACCCACCCTCTGTC 62.395 72.222 0.00 0.00 0.00 3.51
557 558 4.609018 AATGGATCTCCGGCGCCG 62.609 66.667 41.00 41.00 39.43 6.46
558 559 2.203209 AAATGGATCTCCGGCGCC 60.203 61.111 19.07 19.07 39.43 6.53
559 560 1.523711 TGAAATGGATCTCCGGCGC 60.524 57.895 0.00 0.00 39.43 6.53
560 561 1.490693 CGTGAAATGGATCTCCGGCG 61.491 60.000 0.00 0.00 39.43 6.46
561 562 0.179084 TCGTGAAATGGATCTCCGGC 60.179 55.000 0.00 0.00 39.43 6.13
562 563 1.409064 TCTCGTGAAATGGATCTCCGG 59.591 52.381 0.00 0.00 39.43 5.14
563 564 2.359214 TCTCTCGTGAAATGGATCTCCG 59.641 50.000 0.00 0.00 39.43 4.63
564 565 4.116238 GTTCTCTCGTGAAATGGATCTCC 58.884 47.826 0.00 0.00 0.00 3.71
565 566 3.794028 CGTTCTCTCGTGAAATGGATCTC 59.206 47.826 0.00 0.00 0.00 2.75
566 567 3.444034 TCGTTCTCTCGTGAAATGGATCT 59.556 43.478 0.00 0.00 0.00 2.75
567 568 3.770666 TCGTTCTCTCGTGAAATGGATC 58.229 45.455 0.00 0.00 0.00 3.36
568 569 3.444034 TCTCGTTCTCTCGTGAAATGGAT 59.556 43.478 0.00 0.00 31.99 3.41
569 570 2.817844 TCTCGTTCTCTCGTGAAATGGA 59.182 45.455 0.00 0.00 31.99 3.41
570 571 3.217599 TCTCGTTCTCTCGTGAAATGG 57.782 47.619 0.00 0.00 31.99 3.16
571 572 4.143305 GGTTTCTCGTTCTCTCGTGAAATG 60.143 45.833 15.39 0.00 46.64 2.32
572 573 3.988517 GGTTTCTCGTTCTCTCGTGAAAT 59.011 43.478 15.39 0.00 46.64 2.17
573 574 3.067742 AGGTTTCTCGTTCTCTCGTGAAA 59.932 43.478 10.62 10.62 44.73 2.69
574 575 2.621998 AGGTTTCTCGTTCTCTCGTGAA 59.378 45.455 0.00 0.00 40.03 3.18
575 576 2.225963 GAGGTTTCTCGTTCTCTCGTGA 59.774 50.000 0.00 0.00 0.00 4.35
576 577 2.586900 GAGGTTTCTCGTTCTCTCGTG 58.413 52.381 0.00 0.00 0.00 4.35
577 578 1.540707 GGAGGTTTCTCGTTCTCTCGT 59.459 52.381 0.00 0.00 40.85 4.18
578 579 1.540267 TGGAGGTTTCTCGTTCTCTCG 59.460 52.381 0.00 0.00 40.85 4.04
579 580 2.820787 TCTGGAGGTTTCTCGTTCTCTC 59.179 50.000 0.00 0.00 40.85 3.20
580 581 2.559231 GTCTGGAGGTTTCTCGTTCTCT 59.441 50.000 0.00 0.00 40.85 3.10
581 582 2.559231 AGTCTGGAGGTTTCTCGTTCTC 59.441 50.000 0.00 0.00 40.85 2.87
582 583 2.599677 AGTCTGGAGGTTTCTCGTTCT 58.400 47.619 0.00 0.00 40.85 3.01
583 584 4.440387 GGATAGTCTGGAGGTTTCTCGTTC 60.440 50.000 0.00 0.00 40.85 3.95
584 585 3.447944 GGATAGTCTGGAGGTTTCTCGTT 59.552 47.826 0.00 0.00 40.85 3.85
585 586 3.025262 GGATAGTCTGGAGGTTTCTCGT 58.975 50.000 0.00 0.00 40.85 4.18
586 587 2.362717 GGGATAGTCTGGAGGTTTCTCG 59.637 54.545 0.00 0.00 40.85 4.04
587 588 2.701423 GGGGATAGTCTGGAGGTTTCTC 59.299 54.545 0.00 0.00 39.25 2.87
588 589 2.319438 AGGGGATAGTCTGGAGGTTTCT 59.681 50.000 0.00 0.00 0.00 2.52
589 590 2.436173 CAGGGGATAGTCTGGAGGTTTC 59.564 54.545 0.00 0.00 0.00 2.78
590 591 2.225908 ACAGGGGATAGTCTGGAGGTTT 60.226 50.000 0.00 0.00 35.47 3.27
591 592 1.366435 ACAGGGGATAGTCTGGAGGTT 59.634 52.381 0.00 0.00 35.47 3.50
592 593 1.019650 ACAGGGGATAGTCTGGAGGT 58.980 55.000 0.00 0.00 35.47 3.85
593 594 2.182516 AACAGGGGATAGTCTGGAGG 57.817 55.000 0.00 0.00 35.47 4.30
594 595 3.370953 CCAAAACAGGGGATAGTCTGGAG 60.371 52.174 0.00 0.00 35.47 3.86
595 596 2.576191 CCAAAACAGGGGATAGTCTGGA 59.424 50.000 0.00 0.00 35.47 3.86
596 597 2.308866 ACCAAAACAGGGGATAGTCTGG 59.691 50.000 0.00 0.00 35.47 3.86
597 598 3.347216 CACCAAAACAGGGGATAGTCTG 58.653 50.000 0.00 0.00 32.15 3.51
598 599 2.308866 CCACCAAAACAGGGGATAGTCT 59.691 50.000 0.00 0.00 32.15 3.24
599 600 2.041216 ACCACCAAAACAGGGGATAGTC 59.959 50.000 0.00 0.00 32.15 2.59
600 601 2.070573 ACCACCAAAACAGGGGATAGT 58.929 47.619 0.00 0.00 32.15 2.12
601 602 2.825532 CAACCACCAAAACAGGGGATAG 59.174 50.000 0.00 0.00 32.15 2.08
602 603 2.491825 CCAACCACCAAAACAGGGGATA 60.492 50.000 0.00 0.00 32.15 2.59
603 604 1.715785 CAACCACCAAAACAGGGGAT 58.284 50.000 0.00 0.00 32.15 3.85
604 605 0.397816 CCAACCACCAAAACAGGGGA 60.398 55.000 0.00 0.00 32.15 4.81
605 606 0.689412 ACCAACCACCAAAACAGGGG 60.689 55.000 0.00 0.00 0.00 4.79
606 607 1.138069 GAACCAACCACCAAAACAGGG 59.862 52.381 0.00 0.00 0.00 4.45
607 608 1.202359 CGAACCAACCACCAAAACAGG 60.202 52.381 0.00 0.00 0.00 4.00
608 609 1.202359 CCGAACCAACCACCAAAACAG 60.202 52.381 0.00 0.00 0.00 3.16
609 610 0.818296 CCGAACCAACCACCAAAACA 59.182 50.000 0.00 0.00 0.00 2.83
610 611 0.528901 GCCGAACCAACCACCAAAAC 60.529 55.000 0.00 0.00 0.00 2.43
611 612 0.970937 TGCCGAACCAACCACCAAAA 60.971 50.000 0.00 0.00 0.00 2.44
612 613 1.379977 TGCCGAACCAACCACCAAA 60.380 52.632 0.00 0.00 0.00 3.28
613 614 2.122167 GTGCCGAACCAACCACCAA 61.122 57.895 0.00 0.00 0.00 3.67
614 615 2.517402 GTGCCGAACCAACCACCA 60.517 61.111 0.00 0.00 0.00 4.17
615 616 2.122167 TTGTGCCGAACCAACCACC 61.122 57.895 0.00 0.00 0.00 4.61
616 617 1.065109 GTTGTGCCGAACCAACCAC 59.935 57.895 0.00 0.00 0.00 4.16
617 618 0.753479 ATGTTGTGCCGAACCAACCA 60.753 50.000 0.00 0.00 0.00 3.67
618 619 0.318614 CATGTTGTGCCGAACCAACC 60.319 55.000 0.00 0.00 0.00 3.77
619 620 0.383949 ACATGTTGTGCCGAACCAAC 59.616 50.000 0.00 0.00 0.00 3.77
620 621 0.665835 GACATGTTGTGCCGAACCAA 59.334 50.000 0.00 0.00 0.00 3.67
621 622 0.179032 AGACATGTTGTGCCGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
622 623 0.517316 GAGACATGTTGTGCCGAACC 59.483 55.000 0.00 0.00 0.00 3.62
623 624 1.195448 CTGAGACATGTTGTGCCGAAC 59.805 52.381 0.00 0.00 0.00 3.95
624 625 1.202639 ACTGAGACATGTTGTGCCGAA 60.203 47.619 0.00 0.00 0.00 4.30
625 626 0.392706 ACTGAGACATGTTGTGCCGA 59.607 50.000 0.00 0.00 0.00 5.54
626 627 0.792640 GACTGAGACATGTTGTGCCG 59.207 55.000 0.00 0.00 0.00 5.69
627 628 1.160137 GGACTGAGACATGTTGTGCC 58.840 55.000 0.00 0.00 0.00 5.01
628 629 1.160137 GGGACTGAGACATGTTGTGC 58.840 55.000 0.00 2.71 0.00 4.57
629 630 1.432514 CGGGACTGAGACATGTTGTG 58.567 55.000 0.00 0.00 0.00 3.33
630 631 0.321671 CCGGGACTGAGACATGTTGT 59.678 55.000 0.00 0.00 0.00 3.32
631 632 0.321671 ACCGGGACTGAGACATGTTG 59.678 55.000 6.32 0.00 0.00 3.33
632 633 0.608640 GACCGGGACTGAGACATGTT 59.391 55.000 6.32 0.00 0.00 2.71
633 634 0.251832 AGACCGGGACTGAGACATGT 60.252 55.000 6.32 0.00 0.00 3.21
634 635 0.457851 GAGACCGGGACTGAGACATG 59.542 60.000 6.32 0.00 0.00 3.21
635 636 0.039764 TGAGACCGGGACTGAGACAT 59.960 55.000 6.32 0.00 0.00 3.06
636 637 0.178973 TTGAGACCGGGACTGAGACA 60.179 55.000 6.32 0.00 0.00 3.41
637 638 0.244178 GTTGAGACCGGGACTGAGAC 59.756 60.000 6.32 0.00 0.00 3.36
638 639 0.898789 GGTTGAGACCGGGACTGAGA 60.899 60.000 6.32 0.00 35.91 3.27
639 640 1.592223 GGTTGAGACCGGGACTGAG 59.408 63.158 6.32 0.00 35.91 3.35
640 641 3.787394 GGTTGAGACCGGGACTGA 58.213 61.111 6.32 0.00 35.91 3.41
647 648 8.946240 CGATCTCGAATCTATGGTTGAGACCG 62.946 50.000 0.00 0.00 45.15 4.79
648 649 4.920640 TCTCGAATCTATGGTTGAGACC 57.079 45.455 0.00 0.00 46.71 3.85
649 650 5.150683 CGATCTCGAATCTATGGTTGAGAC 58.849 45.833 0.00 0.00 43.02 3.36
650 651 4.216472 CCGATCTCGAATCTATGGTTGAGA 59.784 45.833 0.22 0.00 43.02 3.27
651 652 4.216472 TCCGATCTCGAATCTATGGTTGAG 59.784 45.833 0.22 0.00 43.02 3.02
652 653 4.142038 TCCGATCTCGAATCTATGGTTGA 58.858 43.478 0.22 0.00 43.02 3.18
653 654 4.505313 TCCGATCTCGAATCTATGGTTG 57.495 45.455 0.22 0.00 43.02 3.77
654 655 4.081972 CCATCCGATCTCGAATCTATGGTT 60.082 45.833 18.23 5.28 43.02 3.67
655 656 3.445450 CCATCCGATCTCGAATCTATGGT 59.555 47.826 18.23 0.00 43.02 3.55
656 657 3.445450 ACCATCCGATCTCGAATCTATGG 59.555 47.826 21.19 21.19 43.02 2.74
657 658 4.439426 GGACCATCCGATCTCGAATCTATG 60.439 50.000 0.22 0.95 43.02 2.23
658 659 3.697045 GGACCATCCGATCTCGAATCTAT 59.303 47.826 0.22 0.00 43.02 1.98
659 660 3.082548 GGACCATCCGATCTCGAATCTA 58.917 50.000 0.22 0.00 43.02 1.98
660 661 1.889829 GGACCATCCGATCTCGAATCT 59.110 52.381 0.22 0.00 43.02 2.40
661 662 1.613925 TGGACCATCCGATCTCGAATC 59.386 52.381 0.22 0.00 40.17 2.52
662 663 1.704641 TGGACCATCCGATCTCGAAT 58.295 50.000 0.22 0.00 40.17 3.34
663 664 1.704641 ATGGACCATCCGATCTCGAA 58.295 50.000 0.00 0.00 40.17 3.71
664 665 2.579410 TATGGACCATCCGATCTCGA 57.421 50.000 11.17 0.00 40.17 4.04
665 666 2.094494 CCTTATGGACCATCCGATCTCG 60.094 54.545 11.17 0.00 40.17 4.04
666 667 2.354203 GCCTTATGGACCATCCGATCTC 60.354 54.545 11.17 0.00 40.17 2.75
667 668 1.625818 GCCTTATGGACCATCCGATCT 59.374 52.381 11.17 0.00 40.17 2.75
668 669 1.339151 GGCCTTATGGACCATCCGATC 60.339 57.143 11.17 0.00 40.17 3.69
669 670 0.693049 GGCCTTATGGACCATCCGAT 59.307 55.000 11.17 0.00 40.17 4.18
670 671 2.142220 GGCCTTATGGACCATCCGA 58.858 57.895 11.17 0.00 40.17 4.55
671 672 4.800554 GGCCTTATGGACCATCCG 57.199 61.111 11.17 3.04 40.17 4.18
677 678 4.878878 CCTTCGGGCCTTATGGAC 57.121 61.111 0.84 0.00 41.93 4.02
688 689 3.925630 ATGGTGTGCCTGCCTTCGG 62.926 63.158 0.00 0.00 35.27 4.30
689 690 2.360350 ATGGTGTGCCTGCCTTCG 60.360 61.111 0.00 0.00 35.27 3.79
690 691 0.682209 ATGATGGTGTGCCTGCCTTC 60.682 55.000 0.00 0.00 35.27 3.46
691 692 0.682209 GATGATGGTGTGCCTGCCTT 60.682 55.000 0.00 0.00 35.27 4.35
692 693 1.077212 GATGATGGTGTGCCTGCCT 60.077 57.895 0.00 0.00 35.27 4.75
693 694 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
694 695 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
695 696 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
696 697 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
697 698 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
698 699 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
699 700 1.733912 CGAGTTGGTGATGATGGTGTG 59.266 52.381 0.00 0.00 0.00 3.82
700 701 1.945819 GCGAGTTGGTGATGATGGTGT 60.946 52.381 0.00 0.00 0.00 4.16
701 702 0.729116 GCGAGTTGGTGATGATGGTG 59.271 55.000 0.00 0.00 0.00 4.17
702 703 0.324614 TGCGAGTTGGTGATGATGGT 59.675 50.000 0.00 0.00 0.00 3.55
703 704 1.671979 ATGCGAGTTGGTGATGATGG 58.328 50.000 0.00 0.00 0.00 3.51
704 705 3.770263 AAATGCGAGTTGGTGATGATG 57.230 42.857 0.00 0.00 0.00 3.07
705 706 4.789012 AAAAATGCGAGTTGGTGATGAT 57.211 36.364 0.00 0.00 0.00 2.45
706 707 5.895636 ATAAAAATGCGAGTTGGTGATGA 57.104 34.783 0.00 0.00 0.00 2.92
707 708 7.015226 TCTATAAAAATGCGAGTTGGTGATG 57.985 36.000 0.00 0.00 0.00 3.07
708 709 7.336931 ACTTCTATAAAAATGCGAGTTGGTGAT 59.663 33.333 0.00 0.00 0.00 3.06
709 710 6.653320 ACTTCTATAAAAATGCGAGTTGGTGA 59.347 34.615 0.00 0.00 0.00 4.02
710 711 6.842163 ACTTCTATAAAAATGCGAGTTGGTG 58.158 36.000 0.00 0.00 0.00 4.17
711 712 8.038944 TCTACTTCTATAAAAATGCGAGTTGGT 58.961 33.333 0.00 0.00 0.00 3.67
712 713 8.420374 TCTACTTCTATAAAAATGCGAGTTGG 57.580 34.615 0.00 0.00 0.00 3.77
713 714 9.302345 TCTCTACTTCTATAAAAATGCGAGTTG 57.698 33.333 0.00 0.00 0.00 3.16
736 737 7.066766 AGGCAAATGAAAGAGACAACATATCTC 59.933 37.037 0.00 0.00 42.57 2.75
737 738 6.888632 AGGCAAATGAAAGAGACAACATATCT 59.111 34.615 0.00 0.00 0.00 1.98
738 739 7.093322 AGGCAAATGAAAGAGACAACATATC 57.907 36.000 0.00 0.00 0.00 1.63
756 757 2.047370 TGCTGCGATCGAGGCAAA 60.047 55.556 25.25 9.79 40.39 3.68
768 769 4.353437 GTGGGCTGTTGCTGCTGC 62.353 66.667 8.89 8.89 39.59 5.25
805 806 3.629398 CGAAATTCCTCCCTCATCAAAGG 59.371 47.826 0.00 0.00 36.08 3.11
827 828 2.996168 ATATCTCGGGCGGTGCTTGC 62.996 60.000 0.00 0.00 0.00 4.01
886 898 2.368439 GCATGGCCTGTGACAATTCTA 58.632 47.619 3.32 0.00 0.00 2.10
916 1049 3.304911 TGGAAAATGGACAGTTGGACA 57.695 42.857 0.00 0.00 0.00 4.02
917 1050 4.559153 CAATGGAAAATGGACAGTTGGAC 58.441 43.478 0.00 0.00 0.00 4.02
918 1051 3.006752 GCAATGGAAAATGGACAGTTGGA 59.993 43.478 0.00 0.00 0.00 3.53
919 1052 3.328505 GCAATGGAAAATGGACAGTTGG 58.671 45.455 0.00 0.00 0.00 3.77
920 1053 3.328505 GGCAATGGAAAATGGACAGTTG 58.671 45.455 0.00 0.00 0.00 3.16
921 1054 2.029110 CGGCAATGGAAAATGGACAGTT 60.029 45.455 0.00 0.00 0.00 3.16
922 1055 1.545582 CGGCAATGGAAAATGGACAGT 59.454 47.619 0.00 0.00 0.00 3.55
923 1056 1.135024 CCGGCAATGGAAAATGGACAG 60.135 52.381 0.00 0.00 0.00 3.51
988 2194 0.170561 CGGTCCATCCCGTCGATATC 59.829 60.000 0.00 0.00 43.07 1.63
1056 2262 3.189287 CAGGAAACTTGTGATTCGGGAAG 59.811 47.826 0.00 0.00 40.21 3.46
1062 2268 4.416505 CTGCTCAGGAAACTTGTGATTC 57.583 45.455 0.00 0.00 40.21 2.52
1076 2282 1.676746 CATGGTTGATCCCTGCTCAG 58.323 55.000 0.00 0.00 34.77 3.35
1087 2293 1.521457 GCGCGATCTCCATGGTTGA 60.521 57.895 12.10 11.88 0.00 3.18
1186 2392 1.012486 GGACAGTACGCCGTTCTTGG 61.012 60.000 0.00 0.00 0.00 3.61
1187 2393 0.038526 AGGACAGTACGCCGTTCTTG 60.039 55.000 0.00 0.00 0.00 3.02
1188 2394 0.243095 GAGGACAGTACGCCGTTCTT 59.757 55.000 0.00 0.00 0.00 2.52
1189 2395 0.892358 TGAGGACAGTACGCCGTTCT 60.892 55.000 0.00 0.00 0.00 3.01
1197 2403 0.245813 GGTTCGGGTGAGGACAGTAC 59.754 60.000 0.00 0.00 0.00 2.73
1198 2404 0.901580 GGGTTCGGGTGAGGACAGTA 60.902 60.000 0.00 0.00 0.00 2.74
1221 2427 3.164977 TCCACGGTGTTGCCCAGA 61.165 61.111 7.45 0.00 0.00 3.86
1428 2634 4.148825 ATGAGGTCGGACTGCGCC 62.149 66.667 4.18 0.00 0.00 6.53
1506 2712 1.043673 AGCGGGAGGAGAAAGCGTAT 61.044 55.000 0.00 0.00 0.00 3.06
1616 2822 3.062466 CCTCCTGCAGGTCGACGA 61.062 66.667 31.58 11.07 37.53 4.20
2466 3672 1.762460 GGCCATCTCCTTCCCGAGA 60.762 63.158 0.00 0.00 42.93 4.04
2629 3835 3.525537 ACTTGTTAGCATCACTCATCCG 58.474 45.455 0.00 0.00 0.00 4.18
2669 3875 3.971245 AGTCCACTTCTTGTCCAGATC 57.029 47.619 0.00 0.00 0.00 2.75
2731 3937 0.469144 GGACAAACCCAGAAGGCCAA 60.469 55.000 5.01 0.00 40.58 4.52
2833 4039 4.362932 TTCGTGCAAAAGACAATCAACA 57.637 36.364 0.00 0.00 0.00 3.33
2889 4096 2.140792 ACACACCAGCTCCGTCCTT 61.141 57.895 0.00 0.00 0.00 3.36
2897 4104 4.189580 AACGCCCACACACCAGCT 62.190 61.111 0.00 0.00 0.00 4.24
2987 4198 3.933332 GCATGAACTAGGTAGTGGTTGTC 59.067 47.826 0.00 0.00 36.50 3.18
3032 4243 2.093341 ACGTAGAAAGTGTTGTGTGGGT 60.093 45.455 0.00 0.00 0.00 4.51
3040 4251 3.813166 CCATCCACAACGTAGAAAGTGTT 59.187 43.478 0.00 0.00 0.00 3.32
3047 4259 1.803334 GTTGCCATCCACAACGTAGA 58.197 50.000 0.00 0.00 38.18 2.59
3119 4335 2.432456 TGCAGTTGCCGTCTAGCG 60.432 61.111 1.06 0.33 41.18 4.26
3158 4374 2.926159 GCAGTTGCCATGCGTGTTTATT 60.926 45.455 4.96 0.00 33.31 1.40
3167 4383 2.669434 CAGTTAATTGCAGTTGCCATGC 59.331 45.455 4.47 0.00 44.11 4.06
3180 4396 6.889722 ACCATAGTTGCCATGTACAGTTAATT 59.110 34.615 0.33 0.00 0.00 1.40
3196 4412 5.095725 TCACGTGTGATCCAACCATAGTTG 61.096 45.833 16.51 0.00 42.73 3.16
3197 4413 3.007506 TCACGTGTGATCCAACCATAGTT 59.992 43.478 16.51 0.00 34.14 2.24
3198 4414 2.565391 TCACGTGTGATCCAACCATAGT 59.435 45.455 16.51 0.00 34.14 2.12
3199 4415 2.930040 GTCACGTGTGATCCAACCATAG 59.070 50.000 16.51 0.00 42.18 2.23
3200 4416 2.300437 TGTCACGTGTGATCCAACCATA 59.700 45.455 16.51 0.00 42.18 2.74
3201 4417 1.071542 TGTCACGTGTGATCCAACCAT 59.928 47.619 16.51 0.00 42.18 3.55
3202 4418 0.466124 TGTCACGTGTGATCCAACCA 59.534 50.000 16.51 0.00 42.18 3.67
3203 4419 1.263217 GTTGTCACGTGTGATCCAACC 59.737 52.381 16.51 3.21 42.18 3.77
3204 4420 2.210116 AGTTGTCACGTGTGATCCAAC 58.790 47.619 20.29 20.29 42.25 3.77
3205 4421 2.613026 AGTTGTCACGTGTGATCCAA 57.387 45.000 16.51 8.98 42.18 3.53
3206 4422 2.029380 CCTAGTTGTCACGTGTGATCCA 60.029 50.000 16.51 3.20 42.18 3.41
3207 4423 2.029290 ACCTAGTTGTCACGTGTGATCC 60.029 50.000 16.51 1.32 42.18 3.36
3208 4424 3.299340 ACCTAGTTGTCACGTGTGATC 57.701 47.619 16.51 5.54 42.18 2.92
3209 4425 4.859304 TTACCTAGTTGTCACGTGTGAT 57.141 40.909 16.51 1.29 42.18 3.06
3210 4426 4.142204 TGTTTACCTAGTTGTCACGTGTGA 60.142 41.667 16.51 0.00 37.24 3.58
3211 4427 4.026310 GTGTTTACCTAGTTGTCACGTGTG 60.026 45.833 16.51 0.00 0.00 3.82
3212 4428 4.114794 GTGTTTACCTAGTTGTCACGTGT 58.885 43.478 16.51 0.00 0.00 4.49
3213 4429 4.026310 GTGTGTTTACCTAGTTGTCACGTG 60.026 45.833 9.94 9.94 0.00 4.49
3214 4430 4.114794 GTGTGTTTACCTAGTTGTCACGT 58.885 43.478 0.00 0.00 0.00 4.49
3215 4431 3.180980 CGTGTGTTTACCTAGTTGTCACG 59.819 47.826 0.00 0.00 39.57 4.35
3216 4432 4.026310 CACGTGTGTTTACCTAGTTGTCAC 60.026 45.833 7.58 0.00 0.00 3.67
3237 4477 2.294074 TGGTCAAACAGTAGTTGCCAC 58.706 47.619 0.00 0.00 38.17 5.01
3368 4660 1.002087 GGCAGATGTAGTTATCCGGGG 59.998 57.143 0.00 0.00 0.00 5.73
3525 4823 3.420943 GCCACACATATGGGCGTC 58.579 61.111 4.42 0.00 40.43 5.19
3542 4840 1.676006 GTGGGCGGACATTAGAATTGG 59.324 52.381 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.