Multiple sequence alignment - TraesCS1B01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G251100 chr1B 100.000 2756 0 0 1 2756 443489675 443486920 0.000000e+00 5090.0
1 TraesCS1B01G251100 chr1B 95.089 224 10 1 2095 2317 443489882 443490105 4.370000e-93 351.0
2 TraesCS1B01G251100 chr5B 99.238 2101 12 2 1 2098 524222533 524220434 0.000000e+00 3788.0
3 TraesCS1B01G251100 chr5B 98.655 223 3 0 2095 2317 524220408 524220186 1.990000e-106 396.0
4 TraesCS1B01G251100 chr5B 95.964 223 9 0 2095 2317 524222740 524222962 2.020000e-96 363.0
5 TraesCS1B01G251100 chr5B 92.411 224 17 0 2095 2318 629974410 629974633 1.230000e-83 320.0
6 TraesCS1B01G251100 chr2D 96.051 2102 53 10 1 2098 568756557 568758632 0.000000e+00 3395.0
7 TraesCS1B01G251100 chr2D 97.514 362 4 2 1 358 576860462 576860822 5.040000e-172 614.0
8 TraesCS1B01G251100 chr2D 92.411 224 17 0 2095 2318 568756350 568756127 1.230000e-83 320.0
9 TraesCS1B01G251100 chr3A 94.286 2100 67 17 1 2098 434798445 434800493 0.000000e+00 3164.0
10 TraesCS1B01G251100 chr3A 88.673 1236 93 21 738 1943 583748124 583749342 0.000000e+00 1463.0
11 TraesCS1B01G251100 chr7A 94.074 1890 58 20 210 2098 48767350 48765514 0.000000e+00 2820.0
12 TraesCS1B01G251100 chr7A 95.215 209 9 1 4 211 48767719 48767511 2.050000e-86 329.0
13 TraesCS1B01G251100 chr4D 95.101 1429 44 6 671 2098 30393967 30395370 0.000000e+00 2228.0
14 TraesCS1B01G251100 chr4D 96.919 357 7 3 279 633 30393609 30393963 1.830000e-166 595.0
15 TraesCS1B01G251100 chr4D 96.166 313 6 3 1 308 30393293 30393604 8.810000e-140 507.0
16 TraesCS1B01G251100 chr7D 95.521 1228 34 7 876 2098 207789240 207788029 0.000000e+00 1943.0
17 TraesCS1B01G251100 chr7D 98.104 633 12 0 1 633 207789935 207789303 0.000000e+00 1103.0
18 TraesCS1B01G251100 chr7D 93.722 223 14 0 2095 2317 207736404 207736626 4.400000e-88 335.0
19 TraesCS1B01G251100 chr7D 93.304 224 13 2 2095 2317 207790142 207790364 2.050000e-86 329.0
20 TraesCS1B01G251100 chr7D 97.849 93 1 1 2007 2098 207736286 207736378 2.840000e-35 159.0
21 TraesCS1B01G251100 chr7D 98.333 60 1 0 682 741 207789299 207789240 3.750000e-19 106.0
22 TraesCS1B01G251100 chr6A 98.897 1088 6 3 1 1085 535422670 535421586 0.000000e+00 1938.0
23 TraesCS1B01G251100 chr6A 98.206 223 4 0 2095 2317 535420943 535420721 9.250000e-105 390.0
24 TraesCS1B01G251100 chr6A 95.089 224 11 0 2095 2318 535422877 535423100 1.210000e-93 353.0
25 TraesCS1B01G251100 chr6A 95.833 48 2 0 575 622 23245616 23245569 8.180000e-11 78.7
26 TraesCS1B01G251100 chr6A 100.000 29 0 0 678 706 23245415 23245387 1.000000e-03 54.7
27 TraesCS1B01G251100 chr3B 89.234 1254 79 16 730 1956 580062622 580063846 0.000000e+00 1517.0
28 TraesCS1B01G251100 chr3D 88.968 1260 76 19 730 1956 442511380 442512609 0.000000e+00 1498.0
29 TraesCS1B01G251100 chr1A 96.099 846 30 3 1255 2098 512465714 512466558 0.000000e+00 1376.0
30 TraesCS1B01G251100 chr1A 97.045 440 12 1 2318 2756 425732484 425732045 0.000000e+00 739.0
31 TraesCS1B01G251100 chr1A 93.931 346 9 1 57 402 512465008 512465341 1.890000e-141 512.0
32 TraesCS1B01G251100 chr1A 95.736 258 10 1 392 648 512465404 512465661 5.490000e-112 414.0
33 TraesCS1B01G251100 chr1D 97.494 439 11 0 2318 2756 328893189 328892751 0.000000e+00 750.0
34 TraesCS1B01G251100 chr1D 100.000 28 0 0 678 705 490881238 490881211 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G251100 chr1B 443486920 443489675 2755 True 5090.000000 5090 100.000000 1 2756 1 chr1B.!!$R1 2755
1 TraesCS1B01G251100 chr5B 524220186 524222533 2347 True 2092.000000 3788 98.946500 1 2317 2 chr5B.!!$R1 2316
2 TraesCS1B01G251100 chr2D 568756557 568758632 2075 False 3395.000000 3395 96.051000 1 2098 1 chr2D.!!$F1 2097
3 TraesCS1B01G251100 chr3A 434798445 434800493 2048 False 3164.000000 3164 94.286000 1 2098 1 chr3A.!!$F1 2097
4 TraesCS1B01G251100 chr3A 583748124 583749342 1218 False 1463.000000 1463 88.673000 738 1943 1 chr3A.!!$F2 1205
5 TraesCS1B01G251100 chr7A 48765514 48767719 2205 True 1574.500000 2820 94.644500 4 2098 2 chr7A.!!$R1 2094
6 TraesCS1B01G251100 chr4D 30393293 30395370 2077 False 1110.000000 2228 96.062000 1 2098 3 chr4D.!!$F1 2097
7 TraesCS1B01G251100 chr7D 207788029 207789935 1906 True 1050.666667 1943 97.319333 1 2098 3 chr7D.!!$R1 2097
8 TraesCS1B01G251100 chr6A 535420721 535422670 1949 True 1164.000000 1938 98.551500 1 2317 2 chr6A.!!$R2 2316
9 TraesCS1B01G251100 chr3B 580062622 580063846 1224 False 1517.000000 1517 89.234000 730 1956 1 chr3B.!!$F1 1226
10 TraesCS1B01G251100 chr3D 442511380 442512609 1229 False 1498.000000 1498 88.968000 730 1956 1 chr3D.!!$F1 1226
11 TraesCS1B01G251100 chr1A 512465008 512466558 1550 False 767.333333 1376 95.255333 57 2098 3 chr1A.!!$F1 2041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 86 5.952526 AATTTGGTTCGGAAACTAACGAT 57.047 34.783 7.38 0.0 35.82 3.73 F
1000 1339 1.407258 CCAAAGACAAGGTTTTCCGCA 59.593 47.619 0.00 0.0 46.35 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1084 1447 2.829458 GGAGAGGACCTCGACGGG 60.829 72.222 15.97 0.0 42.89 5.28 R
2524 2947 0.035056 ATTTGAAGAGCGGGGACTGG 60.035 55.000 0.00 0.0 33.56 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 5.952526 AATTTGGTTCGGAAACTAACGAT 57.047 34.783 7.38 0.00 35.82 3.73
1000 1339 1.407258 CCAAAGACAAGGTTTTCCGCA 59.593 47.619 0.00 0.00 46.35 5.69
1084 1447 4.228567 GCGCCTGCCTCTACCTCC 62.229 72.222 0.00 0.00 33.98 4.30
1179 1557 3.195002 CCGGCGTACTCGGTCGTA 61.195 66.667 6.01 0.00 42.33 3.43
1303 1681 2.863346 AAGGTCGGCGTGCACTACA 61.863 57.895 16.19 0.00 0.00 2.74
2029 2423 4.627467 AGCAACTACATGTCGTTCTGAATC 59.373 41.667 12.47 0.14 0.00 2.52
2320 2743 2.343484 GGGGTGCTATTACCTCAACC 57.657 55.000 0.00 0.00 41.08 3.77
2321 2744 1.844497 GGGGTGCTATTACCTCAACCT 59.156 52.381 0.00 0.00 41.08 3.50
2322 2745 2.241430 GGGGTGCTATTACCTCAACCTT 59.759 50.000 0.00 0.00 41.08 3.50
2323 2746 3.457012 GGGGTGCTATTACCTCAACCTTA 59.543 47.826 0.00 0.00 41.08 2.69
2324 2747 4.080186 GGGGTGCTATTACCTCAACCTTAA 60.080 45.833 0.00 0.00 41.08 1.85
2325 2748 5.503002 GGGTGCTATTACCTCAACCTTAAA 58.497 41.667 0.00 0.00 40.66 1.52
2326 2749 5.356190 GGGTGCTATTACCTCAACCTTAAAC 59.644 44.000 0.00 0.00 40.66 2.01
2327 2750 6.178324 GGTGCTATTACCTCAACCTTAAACT 58.822 40.000 0.00 0.00 37.74 2.66
2328 2751 7.333323 GGTGCTATTACCTCAACCTTAAACTA 58.667 38.462 0.00 0.00 37.74 2.24
2329 2752 7.279536 GGTGCTATTACCTCAACCTTAAACTAC 59.720 40.741 0.00 0.00 37.74 2.73
2330 2753 8.039538 GTGCTATTACCTCAACCTTAAACTACT 58.960 37.037 0.00 0.00 0.00 2.57
2331 2754 8.255905 TGCTATTACCTCAACCTTAAACTACTC 58.744 37.037 0.00 0.00 0.00 2.59
2332 2755 8.476447 GCTATTACCTCAACCTTAAACTACTCT 58.524 37.037 0.00 0.00 0.00 3.24
2333 2756 9.804758 CTATTACCTCAACCTTAAACTACTCTG 57.195 37.037 0.00 0.00 0.00 3.35
2334 2757 7.607615 TTACCTCAACCTTAAACTACTCTGT 57.392 36.000 0.00 0.00 0.00 3.41
2335 2758 6.496144 ACCTCAACCTTAAACTACTCTGTT 57.504 37.500 0.00 0.00 0.00 3.16
2336 2759 6.289064 ACCTCAACCTTAAACTACTCTGTTG 58.711 40.000 0.00 0.00 34.45 3.33
2337 2760 5.179555 CCTCAACCTTAAACTACTCTGTTGC 59.820 44.000 0.00 0.00 33.48 4.17
2338 2761 5.676552 TCAACCTTAAACTACTCTGTTGCA 58.323 37.500 0.00 0.00 33.48 4.08
2339 2762 6.116806 TCAACCTTAAACTACTCTGTTGCAA 58.883 36.000 0.00 0.00 33.48 4.08
2340 2763 6.037830 TCAACCTTAAACTACTCTGTTGCAAC 59.962 38.462 22.83 22.83 33.48 4.17
2341 2764 5.433526 ACCTTAAACTACTCTGTTGCAACA 58.566 37.500 29.36 29.36 37.37 3.33
2353 2776 3.138304 TGTTGCAACAGATGTACTGGTC 58.862 45.455 27.96 0.00 43.93 4.02
2354 2777 3.138304 GTTGCAACAGATGTACTGGTCA 58.862 45.455 24.52 0.00 43.93 4.02
2355 2778 3.483808 TGCAACAGATGTACTGGTCAA 57.516 42.857 0.00 0.00 43.93 3.18
2356 2779 3.138304 TGCAACAGATGTACTGGTCAAC 58.862 45.455 0.00 0.00 43.93 3.18
2357 2780 3.138304 GCAACAGATGTACTGGTCAACA 58.862 45.455 0.00 0.00 43.93 3.33
2358 2781 3.187227 GCAACAGATGTACTGGTCAACAG 59.813 47.826 0.00 0.00 43.93 3.16
2368 2791 1.542915 CTGGTCAACAGCAATTCAGGG 59.457 52.381 0.00 0.00 40.97 4.45
2369 2792 0.244721 GGTCAACAGCAATTCAGGGC 59.755 55.000 0.00 0.00 0.00 5.19
2370 2793 0.961019 GTCAACAGCAATTCAGGGCA 59.039 50.000 0.00 0.00 0.00 5.36
2371 2794 1.340889 GTCAACAGCAATTCAGGGCAA 59.659 47.619 0.00 0.00 0.00 4.52
2372 2795 2.028748 GTCAACAGCAATTCAGGGCAAT 60.029 45.455 0.00 0.00 0.00 3.56
2373 2796 2.231964 TCAACAGCAATTCAGGGCAATC 59.768 45.455 0.00 0.00 0.00 2.67
2374 2797 2.226962 ACAGCAATTCAGGGCAATCT 57.773 45.000 0.00 0.00 0.00 2.40
2375 2798 2.097825 ACAGCAATTCAGGGCAATCTC 58.902 47.619 0.00 0.00 0.00 2.75
2376 2799 2.291411 ACAGCAATTCAGGGCAATCTCT 60.291 45.455 0.00 0.00 0.00 3.10
2377 2800 3.054139 ACAGCAATTCAGGGCAATCTCTA 60.054 43.478 0.00 0.00 0.00 2.43
2378 2801 4.142790 CAGCAATTCAGGGCAATCTCTAT 58.857 43.478 0.00 0.00 0.00 1.98
2379 2802 4.583489 CAGCAATTCAGGGCAATCTCTATT 59.417 41.667 0.00 0.00 0.00 1.73
2380 2803 5.068723 CAGCAATTCAGGGCAATCTCTATTT 59.931 40.000 0.00 0.00 0.00 1.40
2381 2804 5.068723 AGCAATTCAGGGCAATCTCTATTTG 59.931 40.000 0.00 0.00 0.00 2.32
2382 2805 5.068198 GCAATTCAGGGCAATCTCTATTTGA 59.932 40.000 0.00 0.00 0.00 2.69
2383 2806 6.501781 CAATTCAGGGCAATCTCTATTTGAC 58.498 40.000 0.00 0.00 0.00 3.18
2386 2809 1.604278 GGGCAATCTCTATTTGACCGC 59.396 52.381 0.00 0.00 42.20 5.68
2387 2810 2.288666 GGCAATCTCTATTTGACCGCA 58.711 47.619 0.00 0.00 0.00 5.69
2388 2811 2.880890 GGCAATCTCTATTTGACCGCAT 59.119 45.455 0.00 0.00 0.00 4.73
2389 2812 4.065088 GGCAATCTCTATTTGACCGCATA 58.935 43.478 0.00 0.00 0.00 3.14
2390 2813 4.697352 GGCAATCTCTATTTGACCGCATAT 59.303 41.667 0.00 0.00 0.00 1.78
2391 2814 5.874810 GGCAATCTCTATTTGACCGCATATA 59.125 40.000 0.00 0.00 0.00 0.86
2392 2815 6.183360 GGCAATCTCTATTTGACCGCATATAC 60.183 42.308 0.00 0.00 0.00 1.47
2393 2816 6.368791 GCAATCTCTATTTGACCGCATATACA 59.631 38.462 0.00 0.00 0.00 2.29
2394 2817 7.065085 GCAATCTCTATTTGACCGCATATACAT 59.935 37.037 0.00 0.00 0.00 2.29
2395 2818 8.598924 CAATCTCTATTTGACCGCATATACATC 58.401 37.037 0.00 0.00 0.00 3.06
2396 2819 6.631016 TCTCTATTTGACCGCATATACATCC 58.369 40.000 0.00 0.00 0.00 3.51
2397 2820 6.437477 TCTCTATTTGACCGCATATACATCCT 59.563 38.462 0.00 0.00 0.00 3.24
2398 2821 7.614192 TCTCTATTTGACCGCATATACATCCTA 59.386 37.037 0.00 0.00 0.00 2.94
2399 2822 8.306313 TCTATTTGACCGCATATACATCCTAT 57.694 34.615 0.00 0.00 0.00 2.57
2400 2823 8.414003 TCTATTTGACCGCATATACATCCTATC 58.586 37.037 0.00 0.00 0.00 2.08
2401 2824 5.993748 TTGACCGCATATACATCCTATCA 57.006 39.130 0.00 0.00 0.00 2.15
2402 2825 5.582689 TGACCGCATATACATCCTATCAG 57.417 43.478 0.00 0.00 0.00 2.90
2403 2826 5.016831 TGACCGCATATACATCCTATCAGT 58.983 41.667 0.00 0.00 0.00 3.41
2404 2827 6.184789 TGACCGCATATACATCCTATCAGTA 58.815 40.000 0.00 0.00 0.00 2.74
2405 2828 6.095021 TGACCGCATATACATCCTATCAGTAC 59.905 42.308 0.00 0.00 0.00 2.73
2406 2829 5.949952 ACCGCATATACATCCTATCAGTACA 59.050 40.000 0.00 0.00 0.00 2.90
2407 2830 6.436218 ACCGCATATACATCCTATCAGTACAA 59.564 38.462 0.00 0.00 0.00 2.41
2408 2831 7.124298 ACCGCATATACATCCTATCAGTACAAT 59.876 37.037 0.00 0.00 0.00 2.71
2409 2832 7.436376 CCGCATATACATCCTATCAGTACAATG 59.564 40.741 0.00 0.00 0.00 2.82
2410 2833 8.190784 CGCATATACATCCTATCAGTACAATGA 58.809 37.037 0.00 0.00 0.00 2.57
2411 2834 9.526713 GCATATACATCCTATCAGTACAATGAG 57.473 37.037 0.00 0.00 31.44 2.90
2428 2851 6.187125 CAATGAGATTGTAAACCTGGTCTG 57.813 41.667 0.00 0.00 35.57 3.51
2429 2852 5.762179 ATGAGATTGTAAACCTGGTCTGA 57.238 39.130 0.00 0.00 0.00 3.27
2430 2853 5.152623 TGAGATTGTAAACCTGGTCTGAG 57.847 43.478 0.00 0.00 0.00 3.35
2431 2854 4.593206 TGAGATTGTAAACCTGGTCTGAGT 59.407 41.667 0.00 0.00 0.00 3.41
2432 2855 5.153950 AGATTGTAAACCTGGTCTGAGTC 57.846 43.478 0.00 0.00 0.00 3.36
2433 2856 3.764237 TTGTAAACCTGGTCTGAGTCC 57.236 47.619 0.00 0.00 0.00 3.85
2434 2857 2.684943 TGTAAACCTGGTCTGAGTCCA 58.315 47.619 0.00 0.00 0.00 4.02
2435 2858 3.248024 TGTAAACCTGGTCTGAGTCCAT 58.752 45.455 0.00 0.00 34.26 3.41
2436 2859 3.650942 TGTAAACCTGGTCTGAGTCCATT 59.349 43.478 0.00 0.00 34.26 3.16
2437 2860 4.841813 TGTAAACCTGGTCTGAGTCCATTA 59.158 41.667 0.00 0.00 34.26 1.90
2438 2861 4.993705 AAACCTGGTCTGAGTCCATTAA 57.006 40.909 0.00 0.00 34.26 1.40
2439 2862 5.520748 AAACCTGGTCTGAGTCCATTAAT 57.479 39.130 0.00 0.00 34.26 1.40
2440 2863 6.636454 AAACCTGGTCTGAGTCCATTAATA 57.364 37.500 0.00 0.00 34.26 0.98
2441 2864 6.636454 AACCTGGTCTGAGTCCATTAATAA 57.364 37.500 0.00 0.00 34.26 1.40
2442 2865 6.831664 ACCTGGTCTGAGTCCATTAATAAT 57.168 37.500 0.00 0.00 34.26 1.28
2443 2866 7.931015 ACCTGGTCTGAGTCCATTAATAATA 57.069 36.000 0.00 0.00 34.26 0.98
2444 2867 8.511748 ACCTGGTCTGAGTCCATTAATAATAT 57.488 34.615 0.00 0.00 34.26 1.28
2445 2868 9.615660 ACCTGGTCTGAGTCCATTAATAATATA 57.384 33.333 0.00 0.00 34.26 0.86
2466 2889 8.974292 ATATAATAGAGGTGAACCATACCAGT 57.026 34.615 1.62 0.00 40.74 4.00
2468 2891 6.732896 AATAGAGGTGAACCATACCAGTAG 57.267 41.667 1.62 0.00 40.74 2.57
2469 2892 3.375699 AGAGGTGAACCATACCAGTAGG 58.624 50.000 1.62 0.00 40.74 3.18
2470 2893 3.012502 AGAGGTGAACCATACCAGTAGGA 59.987 47.826 1.62 0.00 40.74 2.94
2471 2894 3.773119 GAGGTGAACCATACCAGTAGGAA 59.227 47.826 1.62 0.00 40.74 3.36
2472 2895 3.775316 AGGTGAACCATACCAGTAGGAAG 59.225 47.826 1.62 0.00 40.74 3.46
2473 2896 3.773119 GGTGAACCATACCAGTAGGAAGA 59.227 47.826 0.00 0.00 38.12 2.87
2474 2897 4.409247 GGTGAACCATACCAGTAGGAAGAT 59.591 45.833 0.00 0.00 38.12 2.40
2475 2898 5.360591 GTGAACCATACCAGTAGGAAGATG 58.639 45.833 0.00 0.00 38.69 2.90
2476 2899 5.030147 TGAACCATACCAGTAGGAAGATGT 58.970 41.667 0.00 0.00 38.69 3.06
2477 2900 5.104941 TGAACCATACCAGTAGGAAGATGTG 60.105 44.000 0.00 0.00 38.69 3.21
2478 2901 4.362677 ACCATACCAGTAGGAAGATGTGT 58.637 43.478 0.00 0.00 38.69 3.72
2479 2902 4.406003 ACCATACCAGTAGGAAGATGTGTC 59.594 45.833 0.00 0.00 38.69 3.67
2480 2903 4.405680 CCATACCAGTAGGAAGATGTGTCA 59.594 45.833 0.00 0.00 38.69 3.58
2481 2904 5.070981 CCATACCAGTAGGAAGATGTGTCAT 59.929 44.000 0.00 0.00 38.69 3.06
2482 2905 6.408548 CCATACCAGTAGGAAGATGTGTCATT 60.409 42.308 0.00 0.00 38.69 2.57
2483 2906 4.836825 ACCAGTAGGAAGATGTGTCATTG 58.163 43.478 0.00 0.00 38.69 2.82
2484 2907 4.532126 ACCAGTAGGAAGATGTGTCATTGA 59.468 41.667 0.00 0.00 38.69 2.57
2485 2908 5.013079 ACCAGTAGGAAGATGTGTCATTGAA 59.987 40.000 0.00 0.00 38.69 2.69
2486 2909 5.939883 CCAGTAGGAAGATGTGTCATTGAAA 59.060 40.000 0.00 0.00 36.89 2.69
2487 2910 6.600822 CCAGTAGGAAGATGTGTCATTGAAAT 59.399 38.462 0.00 0.00 36.89 2.17
2488 2911 7.770433 CCAGTAGGAAGATGTGTCATTGAAATA 59.230 37.037 0.00 0.00 36.89 1.40
2489 2912 9.166173 CAGTAGGAAGATGTGTCATTGAAATAA 57.834 33.333 0.00 0.00 0.00 1.40
2490 2913 9.911788 AGTAGGAAGATGTGTCATTGAAATAAT 57.088 29.630 0.00 0.00 0.00 1.28
2493 2916 8.830580 AGGAAGATGTGTCATTGAAATAATACG 58.169 33.333 0.00 0.00 0.00 3.06
2494 2917 8.826710 GGAAGATGTGTCATTGAAATAATACGA 58.173 33.333 0.00 0.00 0.00 3.43
2495 2918 9.638300 GAAGATGTGTCATTGAAATAATACGAC 57.362 33.333 0.00 0.00 0.00 4.34
2496 2919 8.142994 AGATGTGTCATTGAAATAATACGACC 57.857 34.615 0.00 0.00 0.00 4.79
2497 2920 7.768582 AGATGTGTCATTGAAATAATACGACCA 59.231 33.333 0.00 0.00 0.00 4.02
2498 2921 7.067532 TGTGTCATTGAAATAATACGACCAC 57.932 36.000 0.00 0.00 0.00 4.16
2499 2922 6.092944 TGTGTCATTGAAATAATACGACCACC 59.907 38.462 0.00 0.00 0.00 4.61
2500 2923 6.092944 GTGTCATTGAAATAATACGACCACCA 59.907 38.462 0.00 0.00 0.00 4.17
2501 2924 6.655425 TGTCATTGAAATAATACGACCACCAA 59.345 34.615 0.00 0.00 0.00 3.67
2502 2925 7.338196 TGTCATTGAAATAATACGACCACCAAT 59.662 33.333 0.00 0.00 0.00 3.16
2503 2926 7.855904 GTCATTGAAATAATACGACCACCAATC 59.144 37.037 0.00 0.00 0.00 2.67
2504 2927 6.687081 TTGAAATAATACGACCACCAATCC 57.313 37.500 0.00 0.00 0.00 3.01
2505 2928 5.746284 TGAAATAATACGACCACCAATCCA 58.254 37.500 0.00 0.00 0.00 3.41
2506 2929 6.361433 TGAAATAATACGACCACCAATCCAT 58.639 36.000 0.00 0.00 0.00 3.41
2507 2930 6.262049 TGAAATAATACGACCACCAATCCATG 59.738 38.462 0.00 0.00 0.00 3.66
2526 2949 3.579534 TGGTACAACCTTAAGCAACCA 57.420 42.857 0.00 3.11 39.58 3.67
2527 2950 3.482436 TGGTACAACCTTAAGCAACCAG 58.518 45.455 0.00 0.00 39.58 4.00
2528 2951 3.117813 TGGTACAACCTTAAGCAACCAGT 60.118 43.478 0.00 0.00 39.58 4.00
2529 2952 3.501062 GGTACAACCTTAAGCAACCAGTC 59.499 47.826 0.00 0.00 34.73 3.51
2530 2953 2.583143 ACAACCTTAAGCAACCAGTCC 58.417 47.619 0.00 0.00 0.00 3.85
2531 2954 1.886542 CAACCTTAAGCAACCAGTCCC 59.113 52.381 0.00 0.00 0.00 4.46
2532 2955 0.404426 ACCTTAAGCAACCAGTCCCC 59.596 55.000 0.00 0.00 0.00 4.81
2533 2956 0.676782 CCTTAAGCAACCAGTCCCCG 60.677 60.000 0.00 0.00 0.00 5.73
2534 2957 1.302993 TTAAGCAACCAGTCCCCGC 60.303 57.895 0.00 0.00 0.00 6.13
2535 2958 1.774894 TTAAGCAACCAGTCCCCGCT 61.775 55.000 0.00 0.00 33.45 5.52
2536 2959 2.180159 TAAGCAACCAGTCCCCGCTC 62.180 60.000 0.00 0.00 31.17 5.03
2537 2960 4.021925 GCAACCAGTCCCCGCTCT 62.022 66.667 0.00 0.00 0.00 4.09
2538 2961 2.750350 CAACCAGTCCCCGCTCTT 59.250 61.111 0.00 0.00 0.00 2.85
2539 2962 1.376037 CAACCAGTCCCCGCTCTTC 60.376 63.158 0.00 0.00 0.00 2.87
2540 2963 1.841556 AACCAGTCCCCGCTCTTCA 60.842 57.895 0.00 0.00 0.00 3.02
2541 2964 1.415672 AACCAGTCCCCGCTCTTCAA 61.416 55.000 0.00 0.00 0.00 2.69
2542 2965 1.374947 CCAGTCCCCGCTCTTCAAA 59.625 57.895 0.00 0.00 0.00 2.69
2543 2966 0.035056 CCAGTCCCCGCTCTTCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
2544 2967 1.373570 CAGTCCCCGCTCTTCAAATC 58.626 55.000 0.00 0.00 0.00 2.17
2545 2968 0.984230 AGTCCCCGCTCTTCAAATCA 59.016 50.000 0.00 0.00 0.00 2.57
2546 2969 1.351017 AGTCCCCGCTCTTCAAATCAA 59.649 47.619 0.00 0.00 0.00 2.57
2547 2970 2.025887 AGTCCCCGCTCTTCAAATCAAT 60.026 45.455 0.00 0.00 0.00 2.57
2548 2971 3.199946 AGTCCCCGCTCTTCAAATCAATA 59.800 43.478 0.00 0.00 0.00 1.90
2549 2972 3.561725 GTCCCCGCTCTTCAAATCAATAG 59.438 47.826 0.00 0.00 0.00 1.73
2550 2973 2.880890 CCCCGCTCTTCAAATCAATAGG 59.119 50.000 0.00 0.00 0.00 2.57
2551 2974 3.545703 CCCGCTCTTCAAATCAATAGGT 58.454 45.455 0.00 0.00 0.00 3.08
2552 2975 4.444306 CCCCGCTCTTCAAATCAATAGGTA 60.444 45.833 0.00 0.00 0.00 3.08
2553 2976 5.308825 CCCGCTCTTCAAATCAATAGGTAT 58.691 41.667 0.00 0.00 0.00 2.73
2554 2977 5.765182 CCCGCTCTTCAAATCAATAGGTATT 59.235 40.000 0.00 0.00 0.00 1.89
2555 2978 6.263168 CCCGCTCTTCAAATCAATAGGTATTT 59.737 38.462 0.00 0.00 0.00 1.40
2556 2979 7.201821 CCCGCTCTTCAAATCAATAGGTATTTT 60.202 37.037 0.00 0.00 0.00 1.82
2557 2980 8.190784 CCGCTCTTCAAATCAATAGGTATTTTT 58.809 33.333 0.00 0.00 0.00 1.94
2558 2981 9.013490 CGCTCTTCAAATCAATAGGTATTTTTG 57.987 33.333 2.43 2.43 30.39 2.44
2568 2991 8.268850 TCAATAGGTATTTTTGAGAGTTCAGC 57.731 34.615 0.00 0.00 34.15 4.26
2569 2992 7.882791 TCAATAGGTATTTTTGAGAGTTCAGCA 59.117 33.333 0.00 0.00 34.15 4.41
2570 2993 5.948992 AGGTATTTTTGAGAGTTCAGCAC 57.051 39.130 0.00 0.00 34.15 4.40
2571 2994 4.762251 AGGTATTTTTGAGAGTTCAGCACC 59.238 41.667 0.00 0.00 34.15 5.01
2572 2995 4.762251 GGTATTTTTGAGAGTTCAGCACCT 59.238 41.667 0.00 0.00 34.15 4.00
2573 2996 5.241728 GGTATTTTTGAGAGTTCAGCACCTT 59.758 40.000 0.00 0.00 34.15 3.50
2574 2997 4.900635 TTTTTGAGAGTTCAGCACCTTC 57.099 40.909 0.00 0.00 34.15 3.46
2575 2998 2.550830 TTGAGAGTTCAGCACCTTCC 57.449 50.000 0.00 0.00 34.15 3.46
2576 2999 1.722034 TGAGAGTTCAGCACCTTCCT 58.278 50.000 0.00 0.00 0.00 3.36
2577 3000 1.345741 TGAGAGTTCAGCACCTTCCTG 59.654 52.381 0.00 0.00 0.00 3.86
2578 3001 1.346068 GAGAGTTCAGCACCTTCCTGT 59.654 52.381 0.00 0.00 0.00 4.00
2579 3002 1.346068 AGAGTTCAGCACCTTCCTGTC 59.654 52.381 0.00 0.00 0.00 3.51
2580 3003 0.398318 AGTTCAGCACCTTCCTGTCC 59.602 55.000 0.00 0.00 0.00 4.02
2581 3004 0.398318 GTTCAGCACCTTCCTGTCCT 59.602 55.000 0.00 0.00 0.00 3.85
2582 3005 0.397941 TTCAGCACCTTCCTGTCCTG 59.602 55.000 0.00 0.00 0.00 3.86
2583 3006 0.471780 TCAGCACCTTCCTGTCCTGA 60.472 55.000 0.00 0.00 0.00 3.86
2584 3007 0.321122 CAGCACCTTCCTGTCCTGAC 60.321 60.000 0.00 0.00 0.00 3.51
2585 3008 1.374758 GCACCTTCCTGTCCTGACG 60.375 63.158 0.00 0.00 0.00 4.35
2586 3009 1.293498 CACCTTCCTGTCCTGACGG 59.707 63.158 0.00 0.00 37.44 4.79
2587 3010 1.152312 ACCTTCCTGTCCTGACGGT 60.152 57.895 5.46 0.00 35.97 4.83
2588 3011 0.763223 ACCTTCCTGTCCTGACGGTT 60.763 55.000 5.46 0.00 30.85 4.44
2589 3012 0.037232 CCTTCCTGTCCTGACGGTTC 60.037 60.000 5.46 0.00 35.97 3.62
2590 3013 0.679505 CTTCCTGTCCTGACGGTTCA 59.320 55.000 5.46 0.00 35.97 3.18
2591 3014 1.276421 CTTCCTGTCCTGACGGTTCAT 59.724 52.381 5.46 0.00 35.97 2.57
2592 3015 0.895530 TCCTGTCCTGACGGTTCATC 59.104 55.000 5.46 0.00 35.97 2.92
2593 3016 0.898320 CCTGTCCTGACGGTTCATCT 59.102 55.000 5.46 0.00 35.97 2.90
2594 3017 2.100197 CCTGTCCTGACGGTTCATCTA 58.900 52.381 5.46 0.00 35.97 1.98
2595 3018 2.695666 CCTGTCCTGACGGTTCATCTAT 59.304 50.000 5.46 0.00 35.97 1.98
2596 3019 3.889538 CCTGTCCTGACGGTTCATCTATA 59.110 47.826 5.46 0.00 35.97 1.31
2597 3020 4.524714 CCTGTCCTGACGGTTCATCTATAT 59.475 45.833 5.46 0.00 35.97 0.86
2598 3021 5.336055 CCTGTCCTGACGGTTCATCTATATC 60.336 48.000 5.46 0.00 35.97 1.63
2599 3022 5.137551 TGTCCTGACGGTTCATCTATATCA 58.862 41.667 0.00 0.00 0.00 2.15
2600 3023 5.241728 TGTCCTGACGGTTCATCTATATCAG 59.758 44.000 0.00 0.00 33.45 2.90
2601 3024 5.065704 CCTGACGGTTCATCTATATCAGG 57.934 47.826 3.15 3.15 44.16 3.86
2602 3025 4.524714 CCTGACGGTTCATCTATATCAGGT 59.475 45.833 8.86 0.00 44.42 4.00
2603 3026 5.710567 CCTGACGGTTCATCTATATCAGGTA 59.289 44.000 8.86 0.00 44.42 3.08
2604 3027 6.378564 CCTGACGGTTCATCTATATCAGGTAT 59.621 42.308 8.86 0.00 44.42 2.73
2605 3028 7.556635 CCTGACGGTTCATCTATATCAGGTATA 59.443 40.741 8.86 0.00 44.42 1.47
2606 3029 8.507524 TGACGGTTCATCTATATCAGGTATAG 57.492 38.462 1.54 1.54 42.40 1.31
2607 3030 7.556635 TGACGGTTCATCTATATCAGGTATAGG 59.443 40.741 7.74 0.00 41.69 2.57
2608 3031 6.321690 ACGGTTCATCTATATCAGGTATAGGC 59.678 42.308 7.74 0.00 41.69 3.93
2609 3032 6.513556 CGGTTCATCTATATCAGGTATAGGCG 60.514 46.154 7.74 0.73 41.69 5.52
2610 3033 6.546403 GGTTCATCTATATCAGGTATAGGCGA 59.454 42.308 7.74 2.81 41.69 5.54
2611 3034 7.068348 GGTTCATCTATATCAGGTATAGGCGAA 59.932 40.741 7.74 7.84 41.69 4.70
2612 3035 8.467598 GTTCATCTATATCAGGTATAGGCGAAA 58.532 37.037 7.74 0.00 41.69 3.46
2613 3036 8.768501 TCATCTATATCAGGTATAGGCGAAAT 57.231 34.615 7.74 0.00 41.69 2.17
2614 3037 8.851145 TCATCTATATCAGGTATAGGCGAAATC 58.149 37.037 7.74 0.00 41.69 2.17
2615 3038 8.633561 CATCTATATCAGGTATAGGCGAAATCA 58.366 37.037 7.74 0.00 41.69 2.57
2616 3039 8.768501 TCTATATCAGGTATAGGCGAAATCAT 57.231 34.615 7.74 0.00 41.69 2.45
2617 3040 8.851145 TCTATATCAGGTATAGGCGAAATCATC 58.149 37.037 7.74 0.00 41.69 2.92
2618 3041 7.667575 ATATCAGGTATAGGCGAAATCATCT 57.332 36.000 0.00 0.00 0.00 2.90
2619 3042 5.392767 TCAGGTATAGGCGAAATCATCTC 57.607 43.478 0.00 0.00 0.00 2.75
2620 3043 5.080337 TCAGGTATAGGCGAAATCATCTCT 58.920 41.667 0.00 0.00 0.00 3.10
2621 3044 5.047731 TCAGGTATAGGCGAAATCATCTCTG 60.048 44.000 0.00 0.00 0.00 3.35
2622 3045 3.929610 GGTATAGGCGAAATCATCTCTGC 59.070 47.826 0.00 0.00 0.00 4.26
2623 3046 3.758755 ATAGGCGAAATCATCTCTGCA 57.241 42.857 0.00 0.00 0.00 4.41
2624 3047 2.634815 AGGCGAAATCATCTCTGCAT 57.365 45.000 0.00 0.00 0.00 3.96
2625 3048 2.219458 AGGCGAAATCATCTCTGCATG 58.781 47.619 0.00 0.00 0.00 4.06
2626 3049 2.158856 AGGCGAAATCATCTCTGCATGA 60.159 45.455 0.00 0.00 37.20 3.07
2627 3050 2.812591 GGCGAAATCATCTCTGCATGAT 59.187 45.455 0.00 0.00 44.05 2.45
2628 3051 3.120269 GGCGAAATCATCTCTGCATGATC 60.120 47.826 0.00 0.00 41.78 2.92
2629 3052 3.497262 GCGAAATCATCTCTGCATGATCA 59.503 43.478 0.00 0.00 41.78 2.92
2630 3053 4.154375 GCGAAATCATCTCTGCATGATCAT 59.846 41.667 1.18 1.18 41.78 2.45
2631 3054 5.671577 GCGAAATCATCTCTGCATGATCATC 60.672 44.000 4.86 1.82 41.78 2.92
2632 3055 5.408604 CGAAATCATCTCTGCATGATCATCA 59.591 40.000 4.86 6.46 41.78 3.07
2633 3056 6.561737 AAATCATCTCTGCATGATCATCAC 57.438 37.500 4.86 1.55 41.78 3.06
2634 3057 4.682778 TCATCTCTGCATGATCATCACA 57.317 40.909 4.86 6.50 0.00 3.58
2635 3058 5.031066 TCATCTCTGCATGATCATCACAA 57.969 39.130 4.86 0.00 0.00 3.33
2636 3059 5.057149 TCATCTCTGCATGATCATCACAAG 58.943 41.667 4.86 7.82 0.00 3.16
2637 3060 4.748277 TCTCTGCATGATCATCACAAGA 57.252 40.909 4.86 9.68 0.00 3.02
2638 3061 5.291905 TCTCTGCATGATCATCACAAGAT 57.708 39.130 4.86 0.00 33.87 2.40
2639 3062 6.415206 TCTCTGCATGATCATCACAAGATA 57.585 37.500 4.86 0.00 31.88 1.98
2640 3063 6.823497 TCTCTGCATGATCATCACAAGATAA 58.177 36.000 4.86 0.00 31.88 1.75
2641 3064 6.704937 TCTCTGCATGATCATCACAAGATAAC 59.295 38.462 4.86 0.00 31.88 1.89
2642 3065 6.350906 TCTGCATGATCATCACAAGATAACA 58.649 36.000 4.86 0.00 31.88 2.41
2643 3066 6.824704 TCTGCATGATCATCACAAGATAACAA 59.175 34.615 4.86 0.00 31.88 2.83
2644 3067 7.501225 TCTGCATGATCATCACAAGATAACAAT 59.499 33.333 4.86 0.00 31.88 2.71
2645 3068 7.422399 TGCATGATCATCACAAGATAACAATG 58.578 34.615 4.86 0.00 31.88 2.82
2646 3069 7.067737 TGCATGATCATCACAAGATAACAATGT 59.932 33.333 4.86 0.00 31.88 2.71
2647 3070 8.562052 GCATGATCATCACAAGATAACAATGTA 58.438 33.333 4.86 0.00 31.88 2.29
2650 3073 9.889128 TGATCATCACAAGATAACAATGTAAGA 57.111 29.630 0.00 0.00 31.88 2.10
2652 3075 9.671279 ATCATCACAAGATAACAATGTAAGACA 57.329 29.630 0.00 0.00 31.88 3.41
2653 3076 9.500785 TCATCACAAGATAACAATGTAAGACAA 57.499 29.630 0.00 0.00 31.88 3.18
2654 3077 9.764870 CATCACAAGATAACAATGTAAGACAAG 57.235 33.333 0.00 0.00 31.88 3.16
2655 3078 8.902540 TCACAAGATAACAATGTAAGACAAGT 57.097 30.769 0.00 0.00 0.00 3.16
2656 3079 9.337396 TCACAAGATAACAATGTAAGACAAGTT 57.663 29.630 0.00 6.21 35.55 2.66
2657 3080 9.599322 CACAAGATAACAATGTAAGACAAGTTC 57.401 33.333 4.66 0.00 34.08 3.01
2658 3081 9.337396 ACAAGATAACAATGTAAGACAAGTTCA 57.663 29.630 4.66 0.00 34.08 3.18
2659 3082 9.817365 CAAGATAACAATGTAAGACAAGTTCAG 57.183 33.333 4.66 0.00 34.08 3.02
2660 3083 9.778741 AAGATAACAATGTAAGACAAGTTCAGA 57.221 29.630 4.66 0.00 34.08 3.27
2661 3084 9.429359 AGATAACAATGTAAGACAAGTTCAGAG 57.571 33.333 4.66 0.00 34.08 3.35
2662 3085 9.424319 GATAACAATGTAAGACAAGTTCAGAGA 57.576 33.333 4.66 0.00 34.08 3.10
2663 3086 9.950496 ATAACAATGTAAGACAAGTTCAGAGAT 57.050 29.630 4.66 0.00 34.08 2.75
2665 3088 9.778741 AACAATGTAAGACAAGTTCAGAGATAA 57.221 29.630 0.00 0.00 28.60 1.75
2666 3089 9.429359 ACAATGTAAGACAAGTTCAGAGATAAG 57.571 33.333 0.00 0.00 0.00 1.73
2667 3090 8.386606 CAATGTAAGACAAGTTCAGAGATAAGC 58.613 37.037 0.00 0.00 0.00 3.09
2668 3091 6.398918 TGTAAGACAAGTTCAGAGATAAGCC 58.601 40.000 0.00 0.00 0.00 4.35
2669 3092 4.479786 AGACAAGTTCAGAGATAAGCCC 57.520 45.455 0.00 0.00 0.00 5.19
2670 3093 4.100373 AGACAAGTTCAGAGATAAGCCCT 58.900 43.478 0.00 0.00 0.00 5.19
2671 3094 4.534103 AGACAAGTTCAGAGATAAGCCCTT 59.466 41.667 0.00 0.00 0.00 3.95
2672 3095 4.837972 ACAAGTTCAGAGATAAGCCCTTC 58.162 43.478 0.00 0.00 0.00 3.46
2673 3096 4.534103 ACAAGTTCAGAGATAAGCCCTTCT 59.466 41.667 0.00 0.00 0.00 2.85
2674 3097 5.721960 ACAAGTTCAGAGATAAGCCCTTCTA 59.278 40.000 0.00 0.00 0.00 2.10
2675 3098 6.127196 ACAAGTTCAGAGATAAGCCCTTCTAG 60.127 42.308 0.00 0.00 0.00 2.43
2676 3099 5.772004 AGTTCAGAGATAAGCCCTTCTAGA 58.228 41.667 0.00 0.00 0.00 2.43
2677 3100 6.381250 AGTTCAGAGATAAGCCCTTCTAGAT 58.619 40.000 0.00 0.00 0.00 1.98
2678 3101 6.493458 AGTTCAGAGATAAGCCCTTCTAGATC 59.507 42.308 0.00 0.00 0.00 2.75
2679 3102 6.212840 TCAGAGATAAGCCCTTCTAGATCT 57.787 41.667 0.00 0.00 32.97 2.75
2680 3103 7.336475 TCAGAGATAAGCCCTTCTAGATCTA 57.664 40.000 1.69 1.69 31.39 1.98
2681 3104 7.760607 TCAGAGATAAGCCCTTCTAGATCTAA 58.239 38.462 3.57 0.00 31.39 2.10
2682 3105 8.228206 TCAGAGATAAGCCCTTCTAGATCTAAA 58.772 37.037 3.57 1.26 31.39 1.85
2683 3106 8.865090 CAGAGATAAGCCCTTCTAGATCTAAAA 58.135 37.037 3.57 0.00 31.39 1.52
2684 3107 8.866093 AGAGATAAGCCCTTCTAGATCTAAAAC 58.134 37.037 3.57 0.00 31.39 2.43
2685 3108 8.554490 AGATAAGCCCTTCTAGATCTAAAACA 57.446 34.615 3.57 0.00 30.17 2.83
2686 3109 9.165057 AGATAAGCCCTTCTAGATCTAAAACAT 57.835 33.333 3.57 0.00 30.17 2.71
2687 3110 9.785982 GATAAGCCCTTCTAGATCTAAAACATT 57.214 33.333 3.57 0.00 0.00 2.71
2692 3115 9.157104 GCCCTTCTAGATCTAAAACATTATAGC 57.843 37.037 3.57 0.00 0.00 2.97
2693 3116 9.660180 CCCTTCTAGATCTAAAACATTATAGCC 57.340 37.037 3.57 0.00 0.00 3.93
2697 3120 9.658799 TCTAGATCTAAAACATTATAGCCATGC 57.341 33.333 3.57 0.00 0.00 4.06
2698 3121 9.664332 CTAGATCTAAAACATTATAGCCATGCT 57.336 33.333 3.57 0.00 43.41 3.79
2708 3131 8.340618 ACATTATAGCCATGCTAAAATAGTGG 57.659 34.615 0.00 0.00 44.62 4.00
2709 3132 7.394359 ACATTATAGCCATGCTAAAATAGTGGG 59.606 37.037 0.00 0.00 44.62 4.61
2710 3133 3.951563 AGCCATGCTAAAATAGTGGGA 57.048 42.857 0.00 0.00 36.99 4.37
2711 3134 4.459852 AGCCATGCTAAAATAGTGGGAT 57.540 40.909 0.00 0.00 36.99 3.85
2712 3135 4.401925 AGCCATGCTAAAATAGTGGGATC 58.598 43.478 0.00 0.00 36.99 3.36
2713 3136 3.189287 GCCATGCTAAAATAGTGGGATCG 59.811 47.826 0.00 0.00 0.00 3.69
2714 3137 4.641396 CCATGCTAAAATAGTGGGATCGA 58.359 43.478 0.00 0.00 0.00 3.59
2715 3138 5.248640 CCATGCTAAAATAGTGGGATCGAT 58.751 41.667 0.00 0.00 0.00 3.59
2716 3139 6.406370 CCATGCTAAAATAGTGGGATCGATA 58.594 40.000 0.00 0.00 0.00 2.92
2717 3140 6.313905 CCATGCTAAAATAGTGGGATCGATAC 59.686 42.308 0.00 0.00 0.00 2.24
2718 3141 5.790593 TGCTAAAATAGTGGGATCGATACC 58.209 41.667 20.68 20.68 0.00 2.73
2719 3142 5.176592 GCTAAAATAGTGGGATCGATACCC 58.823 45.833 24.31 21.82 46.87 3.69
2726 3149 2.320745 GGGATCGATACCCAAACGTT 57.679 50.000 16.63 0.00 46.05 3.99
2727 3150 2.635714 GGGATCGATACCCAAACGTTT 58.364 47.619 16.63 7.96 46.05 3.60
2728 3151 2.610833 GGGATCGATACCCAAACGTTTC 59.389 50.000 16.63 0.00 46.05 2.78
2729 3152 3.528532 GGATCGATACCCAAACGTTTCT 58.471 45.455 11.37 0.00 0.00 2.52
2730 3153 3.937079 GGATCGATACCCAAACGTTTCTT 59.063 43.478 11.37 0.58 0.00 2.52
2731 3154 4.201783 GGATCGATACCCAAACGTTTCTTG 60.202 45.833 11.37 0.38 0.00 3.02
2732 3155 3.992643 TCGATACCCAAACGTTTCTTGA 58.007 40.909 11.37 0.00 0.00 3.02
2733 3156 3.991773 TCGATACCCAAACGTTTCTTGAG 59.008 43.478 11.37 0.00 0.00 3.02
2734 3157 3.424433 CGATACCCAAACGTTTCTTGAGC 60.424 47.826 11.37 0.00 0.00 4.26
2735 3158 2.052782 ACCCAAACGTTTCTTGAGCT 57.947 45.000 11.37 0.00 0.00 4.09
2736 3159 1.947456 ACCCAAACGTTTCTTGAGCTC 59.053 47.619 11.37 6.82 0.00 4.09
2737 3160 1.946768 CCCAAACGTTTCTTGAGCTCA 59.053 47.619 13.74 13.74 0.00 4.26
2738 3161 2.357637 CCCAAACGTTTCTTGAGCTCAA 59.642 45.455 26.87 26.87 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 9.273016 TGGCCGAAATTTTGTTCATTTAAATTA 57.727 25.926 0.00 0.00 32.73 1.40
1084 1447 2.829458 GGAGAGGACCTCGACGGG 60.829 72.222 15.97 0.00 42.89 5.28
1179 1557 3.461773 CCCGACACTGCGAGGGAT 61.462 66.667 0.00 0.00 46.64 3.85
2029 2423 7.117454 GGAACTACGAATGTTCATGTATTTCG 58.883 38.462 14.45 14.45 43.84 3.46
2104 2527 7.366551 CCCCCTATAGTTTTCTGTAATCAACCT 60.367 40.741 0.00 0.00 0.00 3.50
2317 2740 5.883673 TGTTGCAACAGAGTAGTTTAAGGTT 59.116 36.000 27.96 0.00 34.30 3.50
2318 2741 5.433526 TGTTGCAACAGAGTAGTTTAAGGT 58.566 37.500 27.96 0.00 34.30 3.50
2332 2755 3.138304 GACCAGTACATCTGTTGCAACA 58.862 45.455 29.36 29.36 42.19 3.33
2333 2756 3.138304 TGACCAGTACATCTGTTGCAAC 58.862 45.455 22.83 22.83 42.19 4.17
2334 2757 3.483808 TGACCAGTACATCTGTTGCAA 57.516 42.857 0.00 0.00 42.19 4.08
2335 2758 3.138304 GTTGACCAGTACATCTGTTGCA 58.862 45.455 0.00 0.00 42.19 4.08
2336 2759 3.138304 TGTTGACCAGTACATCTGTTGC 58.862 45.455 0.00 0.00 42.19 4.17
2337 2760 3.187227 GCTGTTGACCAGTACATCTGTTG 59.813 47.826 0.00 0.00 43.55 3.33
2338 2761 3.181455 TGCTGTTGACCAGTACATCTGTT 60.181 43.478 0.00 0.00 43.55 3.16
2339 2762 2.368548 TGCTGTTGACCAGTACATCTGT 59.631 45.455 0.00 0.00 43.55 3.41
2340 2763 3.044235 TGCTGTTGACCAGTACATCTG 57.956 47.619 0.00 0.00 43.55 2.90
2341 2764 3.769739 TTGCTGTTGACCAGTACATCT 57.230 42.857 0.00 0.00 43.55 2.90
2342 2765 4.455533 TGAATTGCTGTTGACCAGTACATC 59.544 41.667 0.00 0.00 43.55 3.06
2343 2766 4.397420 TGAATTGCTGTTGACCAGTACAT 58.603 39.130 0.00 0.00 43.55 2.29
2344 2767 3.814625 TGAATTGCTGTTGACCAGTACA 58.185 40.909 0.00 0.00 43.55 2.90
2345 2768 3.189287 CCTGAATTGCTGTTGACCAGTAC 59.811 47.826 0.00 0.00 43.55 2.73
2346 2769 3.411446 CCTGAATTGCTGTTGACCAGTA 58.589 45.455 0.00 0.00 43.55 2.74
2347 2770 2.233271 CCTGAATTGCTGTTGACCAGT 58.767 47.619 0.00 0.00 43.55 4.00
2348 2771 1.542915 CCCTGAATTGCTGTTGACCAG 59.457 52.381 0.00 0.00 44.53 4.00
2349 2772 1.619654 CCCTGAATTGCTGTTGACCA 58.380 50.000 0.00 0.00 0.00 4.02
2350 2773 0.244721 GCCCTGAATTGCTGTTGACC 59.755 55.000 0.00 0.00 0.00 4.02
2351 2774 0.961019 TGCCCTGAATTGCTGTTGAC 59.039 50.000 0.00 0.00 0.00 3.18
2352 2775 1.702182 TTGCCCTGAATTGCTGTTGA 58.298 45.000 0.00 0.00 0.00 3.18
2353 2776 2.232941 AGATTGCCCTGAATTGCTGTTG 59.767 45.455 0.00 0.00 0.00 3.33
2354 2777 2.494870 GAGATTGCCCTGAATTGCTGTT 59.505 45.455 0.00 0.00 0.00 3.16
2355 2778 2.097825 GAGATTGCCCTGAATTGCTGT 58.902 47.619 0.00 0.00 0.00 4.40
2356 2779 2.376109 AGAGATTGCCCTGAATTGCTG 58.624 47.619 0.00 0.00 0.00 4.41
2357 2780 2.822707 AGAGATTGCCCTGAATTGCT 57.177 45.000 0.00 0.00 0.00 3.91
2358 2781 5.068198 TCAAATAGAGATTGCCCTGAATTGC 59.932 40.000 0.00 0.00 0.00 3.56
2359 2782 6.460676 GGTCAAATAGAGATTGCCCTGAATTG 60.461 42.308 0.00 0.00 0.00 2.32
2360 2783 5.595952 GGTCAAATAGAGATTGCCCTGAATT 59.404 40.000 0.00 0.00 0.00 2.17
2361 2784 5.136105 GGTCAAATAGAGATTGCCCTGAAT 58.864 41.667 0.00 0.00 0.00 2.57
2362 2785 4.526970 GGTCAAATAGAGATTGCCCTGAA 58.473 43.478 0.00 0.00 0.00 3.02
2363 2786 3.432186 CGGTCAAATAGAGATTGCCCTGA 60.432 47.826 0.00 0.00 0.00 3.86
2364 2787 2.874701 CGGTCAAATAGAGATTGCCCTG 59.125 50.000 0.00 0.00 0.00 4.45
2365 2788 2.746472 GCGGTCAAATAGAGATTGCCCT 60.746 50.000 0.00 0.00 0.00 5.19
2366 2789 1.604278 GCGGTCAAATAGAGATTGCCC 59.396 52.381 0.00 0.00 0.00 5.36
2367 2790 2.288666 TGCGGTCAAATAGAGATTGCC 58.711 47.619 0.00 0.00 0.00 4.52
2368 2791 5.869753 ATATGCGGTCAAATAGAGATTGC 57.130 39.130 0.00 0.00 0.00 3.56
2369 2792 7.889589 TGTATATGCGGTCAAATAGAGATTG 57.110 36.000 0.00 0.00 0.00 2.67
2370 2793 7.766278 GGATGTATATGCGGTCAAATAGAGATT 59.234 37.037 0.00 0.00 0.00 2.40
2371 2794 7.124901 AGGATGTATATGCGGTCAAATAGAGAT 59.875 37.037 0.00 0.00 0.00 2.75
2372 2795 6.437477 AGGATGTATATGCGGTCAAATAGAGA 59.563 38.462 0.00 0.00 0.00 3.10
2373 2796 6.634805 AGGATGTATATGCGGTCAAATAGAG 58.365 40.000 0.00 0.00 0.00 2.43
2374 2797 6.605471 AGGATGTATATGCGGTCAAATAGA 57.395 37.500 0.00 0.00 0.00 1.98
2375 2798 8.197439 TGATAGGATGTATATGCGGTCAAATAG 58.803 37.037 0.68 0.00 0.00 1.73
2376 2799 8.073467 TGATAGGATGTATATGCGGTCAAATA 57.927 34.615 0.68 0.00 0.00 1.40
2377 2800 6.946340 TGATAGGATGTATATGCGGTCAAAT 58.054 36.000 0.68 0.00 0.00 2.32
2378 2801 6.014584 ACTGATAGGATGTATATGCGGTCAAA 60.015 38.462 3.92 0.00 0.00 2.69
2379 2802 5.480422 ACTGATAGGATGTATATGCGGTCAA 59.520 40.000 3.92 0.00 0.00 3.18
2380 2803 5.016831 ACTGATAGGATGTATATGCGGTCA 58.983 41.667 0.00 2.74 0.00 4.02
2381 2804 5.584253 ACTGATAGGATGTATATGCGGTC 57.416 43.478 0.00 0.00 0.00 4.79
2382 2805 5.949952 TGTACTGATAGGATGTATATGCGGT 59.050 40.000 0.00 0.00 0.00 5.68
2383 2806 6.451064 TGTACTGATAGGATGTATATGCGG 57.549 41.667 0.00 0.00 0.00 5.69
2384 2807 8.190784 TCATTGTACTGATAGGATGTATATGCG 58.809 37.037 0.00 0.00 0.00 4.73
2385 2808 9.526713 CTCATTGTACTGATAGGATGTATATGC 57.473 37.037 0.00 0.00 0.00 3.14
2405 2828 5.939883 TCAGACCAGGTTTACAATCTCATTG 59.060 40.000 0.00 0.00 45.59 2.82
2406 2829 6.126863 TCAGACCAGGTTTACAATCTCATT 57.873 37.500 0.00 0.00 0.00 2.57
2407 2830 5.249393 ACTCAGACCAGGTTTACAATCTCAT 59.751 40.000 0.00 0.00 0.00 2.90
2408 2831 4.593206 ACTCAGACCAGGTTTACAATCTCA 59.407 41.667 0.00 0.00 0.00 3.27
2409 2832 5.153950 ACTCAGACCAGGTTTACAATCTC 57.846 43.478 0.00 0.00 0.00 2.75
2410 2833 4.020128 GGACTCAGACCAGGTTTACAATCT 60.020 45.833 0.00 0.00 0.00 2.40
2411 2834 4.254492 GGACTCAGACCAGGTTTACAATC 58.746 47.826 0.00 0.00 0.00 2.67
2412 2835 3.650942 TGGACTCAGACCAGGTTTACAAT 59.349 43.478 0.00 0.00 33.22 2.71
2413 2836 3.042682 TGGACTCAGACCAGGTTTACAA 58.957 45.455 0.00 0.00 33.22 2.41
2414 2837 2.684943 TGGACTCAGACCAGGTTTACA 58.315 47.619 0.00 0.00 33.22 2.41
2415 2838 3.983044 ATGGACTCAGACCAGGTTTAC 57.017 47.619 1.42 0.00 40.89 2.01
2416 2839 6.636454 ATTAATGGACTCAGACCAGGTTTA 57.364 37.500 1.42 0.00 40.89 2.01
2417 2840 4.993705 TTAATGGACTCAGACCAGGTTT 57.006 40.909 1.42 0.00 40.89 3.27
2418 2841 6.636454 TTATTAATGGACTCAGACCAGGTT 57.364 37.500 1.42 0.00 40.89 3.50
2419 2842 6.831664 ATTATTAATGGACTCAGACCAGGT 57.168 37.500 1.42 0.00 40.89 4.00
2440 2863 9.393786 ACTGGTATGGTTCACCTCTATTATATT 57.606 33.333 0.00 0.00 36.96 1.28
2441 2864 8.974292 ACTGGTATGGTTCACCTCTATTATAT 57.026 34.615 0.00 0.00 36.96 0.86
2442 2865 9.529823 CTACTGGTATGGTTCACCTCTATTATA 57.470 37.037 0.00 0.00 36.96 0.98
2443 2866 7.455008 CCTACTGGTATGGTTCACCTCTATTAT 59.545 40.741 0.00 0.00 36.96 1.28
2444 2867 6.781014 CCTACTGGTATGGTTCACCTCTATTA 59.219 42.308 0.00 0.00 36.96 0.98
2445 2868 5.602978 CCTACTGGTATGGTTCACCTCTATT 59.397 44.000 0.00 0.00 36.96 1.73
2446 2869 5.103215 TCCTACTGGTATGGTTCACCTCTAT 60.103 44.000 0.00 0.00 36.96 1.98
2447 2870 4.231195 TCCTACTGGTATGGTTCACCTCTA 59.769 45.833 0.00 0.00 36.96 2.43
2448 2871 3.012502 TCCTACTGGTATGGTTCACCTCT 59.987 47.826 0.00 0.00 36.96 3.69
2449 2872 3.371965 TCCTACTGGTATGGTTCACCTC 58.628 50.000 0.00 0.00 36.96 3.85
2450 2873 3.484953 TCCTACTGGTATGGTTCACCT 57.515 47.619 0.00 0.00 36.96 4.00
2451 2874 3.773119 TCTTCCTACTGGTATGGTTCACC 59.227 47.826 0.00 0.00 36.54 4.02
2452 2875 5.104900 ACATCTTCCTACTGGTATGGTTCAC 60.105 44.000 0.00 0.00 34.23 3.18
2453 2876 5.030147 ACATCTTCCTACTGGTATGGTTCA 58.970 41.667 0.00 0.00 34.23 3.18
2454 2877 5.104900 ACACATCTTCCTACTGGTATGGTTC 60.105 44.000 0.00 0.00 34.23 3.62
2455 2878 4.783227 ACACATCTTCCTACTGGTATGGTT 59.217 41.667 0.00 0.00 34.23 3.67
2456 2879 4.362677 ACACATCTTCCTACTGGTATGGT 58.637 43.478 0.00 0.00 34.23 3.55
2457 2880 4.405680 TGACACATCTTCCTACTGGTATGG 59.594 45.833 0.00 0.00 34.23 2.74
2458 2881 5.598416 TGACACATCTTCCTACTGGTATG 57.402 43.478 0.00 0.00 34.23 2.39
2459 2882 6.384015 TCAATGACACATCTTCCTACTGGTAT 59.616 38.462 0.00 0.00 34.23 2.73
2460 2883 5.719563 TCAATGACACATCTTCCTACTGGTA 59.280 40.000 0.00 0.00 34.23 3.25
2461 2884 4.532126 TCAATGACACATCTTCCTACTGGT 59.468 41.667 0.00 0.00 34.23 4.00
2462 2885 5.089970 TCAATGACACATCTTCCTACTGG 57.910 43.478 0.00 0.00 0.00 4.00
2463 2886 7.621428 ATTTCAATGACACATCTTCCTACTG 57.379 36.000 0.00 0.00 0.00 2.74
2464 2887 9.911788 ATTATTTCAATGACACATCTTCCTACT 57.088 29.630 0.00 0.00 0.00 2.57
2467 2890 8.830580 CGTATTATTTCAATGACACATCTTCCT 58.169 33.333 0.00 0.00 0.00 3.36
2468 2891 8.826710 TCGTATTATTTCAATGACACATCTTCC 58.173 33.333 0.00 0.00 0.00 3.46
2469 2892 9.638300 GTCGTATTATTTCAATGACACATCTTC 57.362 33.333 0.00 0.00 0.00 2.87
2470 2893 8.612619 GGTCGTATTATTTCAATGACACATCTT 58.387 33.333 0.00 0.00 32.01 2.40
2471 2894 7.768582 TGGTCGTATTATTTCAATGACACATCT 59.231 33.333 0.00 0.00 32.01 2.90
2472 2895 7.850982 GTGGTCGTATTATTTCAATGACACATC 59.149 37.037 0.00 0.00 32.01 3.06
2473 2896 7.201696 GGTGGTCGTATTATTTCAATGACACAT 60.202 37.037 0.00 0.00 32.01 3.21
2474 2897 6.092944 GGTGGTCGTATTATTTCAATGACACA 59.907 38.462 0.00 0.00 32.01 3.72
2475 2898 6.092944 TGGTGGTCGTATTATTTCAATGACAC 59.907 38.462 0.00 0.00 32.01 3.67
2476 2899 6.174049 TGGTGGTCGTATTATTTCAATGACA 58.826 36.000 0.00 0.00 32.01 3.58
2477 2900 6.671614 TGGTGGTCGTATTATTTCAATGAC 57.328 37.500 0.00 0.00 0.00 3.06
2478 2901 7.012894 GGATTGGTGGTCGTATTATTTCAATGA 59.987 37.037 0.00 0.00 0.00 2.57
2479 2902 7.138736 GGATTGGTGGTCGTATTATTTCAATG 58.861 38.462 0.00 0.00 0.00 2.82
2480 2903 6.831353 TGGATTGGTGGTCGTATTATTTCAAT 59.169 34.615 0.00 0.00 0.00 2.57
2481 2904 6.181190 TGGATTGGTGGTCGTATTATTTCAA 58.819 36.000 0.00 0.00 0.00 2.69
2482 2905 5.746284 TGGATTGGTGGTCGTATTATTTCA 58.254 37.500 0.00 0.00 0.00 2.69
2483 2906 6.293955 CCATGGATTGGTGGTCGTATTATTTC 60.294 42.308 5.56 0.00 40.99 2.17
2484 2907 5.534654 CCATGGATTGGTGGTCGTATTATTT 59.465 40.000 5.56 0.00 40.99 1.40
2485 2908 5.070001 CCATGGATTGGTGGTCGTATTATT 58.930 41.667 5.56 0.00 40.99 1.40
2486 2909 4.651778 CCATGGATTGGTGGTCGTATTAT 58.348 43.478 5.56 0.00 40.99 1.28
2487 2910 4.079980 CCATGGATTGGTGGTCGTATTA 57.920 45.455 5.56 0.00 40.99 0.98
2488 2911 2.930950 CCATGGATTGGTGGTCGTATT 58.069 47.619 5.56 0.00 40.99 1.89
2489 2912 2.638480 CCATGGATTGGTGGTCGTAT 57.362 50.000 5.56 0.00 40.99 3.06
2499 2922 4.704540 TGCTTAAGGTTGTACCATGGATTG 59.295 41.667 21.47 0.00 41.95 2.67
2500 2923 4.929479 TGCTTAAGGTTGTACCATGGATT 58.071 39.130 21.47 0.00 41.95 3.01
2501 2924 4.584638 TGCTTAAGGTTGTACCATGGAT 57.415 40.909 21.47 5.32 41.95 3.41
2502 2925 4.076394 GTTGCTTAAGGTTGTACCATGGA 58.924 43.478 21.47 0.00 41.95 3.41
2503 2926 3.192633 GGTTGCTTAAGGTTGTACCATGG 59.807 47.826 11.19 11.19 41.95 3.66
2504 2927 3.823873 TGGTTGCTTAAGGTTGTACCATG 59.176 43.478 4.29 0.00 41.95 3.66
2505 2928 4.079253 CTGGTTGCTTAAGGTTGTACCAT 58.921 43.478 4.29 0.00 41.95 3.55
2506 2929 3.117813 ACTGGTTGCTTAAGGTTGTACCA 60.118 43.478 4.29 0.00 41.95 3.25
2507 2930 3.483421 ACTGGTTGCTTAAGGTTGTACC 58.517 45.455 4.29 0.00 38.99 3.34
2508 2931 3.501062 GGACTGGTTGCTTAAGGTTGTAC 59.499 47.826 4.29 0.00 0.00 2.90
2509 2932 3.497227 GGGACTGGTTGCTTAAGGTTGTA 60.497 47.826 4.29 0.00 0.00 2.41
2510 2933 2.583143 GGACTGGTTGCTTAAGGTTGT 58.417 47.619 4.29 0.00 0.00 3.32
2511 2934 1.886542 GGGACTGGTTGCTTAAGGTTG 59.113 52.381 4.29 0.00 0.00 3.77
2512 2935 1.203013 GGGGACTGGTTGCTTAAGGTT 60.203 52.381 4.29 0.00 0.00 3.50
2513 2936 0.404426 GGGGACTGGTTGCTTAAGGT 59.596 55.000 4.29 0.00 0.00 3.50
2514 2937 0.676782 CGGGGACTGGTTGCTTAAGG 60.677 60.000 4.29 0.00 0.00 2.69
2515 2938 1.305930 GCGGGGACTGGTTGCTTAAG 61.306 60.000 0.00 0.00 33.56 1.85
2516 2939 1.302993 GCGGGGACTGGTTGCTTAA 60.303 57.895 0.00 0.00 33.56 1.85
2517 2940 2.221299 AGCGGGGACTGGTTGCTTA 61.221 57.895 0.00 0.00 46.86 3.09
2518 2941 3.570212 AGCGGGGACTGGTTGCTT 61.570 61.111 0.00 0.00 46.86 3.91
2524 2947 0.035056 ATTTGAAGAGCGGGGACTGG 60.035 55.000 0.00 0.00 33.56 4.00
2525 2948 1.339055 TGATTTGAAGAGCGGGGACTG 60.339 52.381 0.00 0.00 38.10 3.51
2526 2949 0.984230 TGATTTGAAGAGCGGGGACT 59.016 50.000 0.00 0.00 0.00 3.85
2527 2950 1.821216 TTGATTTGAAGAGCGGGGAC 58.179 50.000 0.00 0.00 0.00 4.46
2528 2951 2.806945 ATTGATTTGAAGAGCGGGGA 57.193 45.000 0.00 0.00 0.00 4.81
2529 2952 2.880890 CCTATTGATTTGAAGAGCGGGG 59.119 50.000 0.00 0.00 0.00 5.73
2530 2953 3.545703 ACCTATTGATTTGAAGAGCGGG 58.454 45.455 0.00 0.00 0.00 6.13
2531 2954 6.867662 AATACCTATTGATTTGAAGAGCGG 57.132 37.500 0.00 0.00 0.00 5.52
2532 2955 9.013490 CAAAAATACCTATTGATTTGAAGAGCG 57.987 33.333 0.00 0.00 30.55 5.03
2542 2965 8.897752 GCTGAACTCTCAAAAATACCTATTGAT 58.102 33.333 0.00 0.00 33.03 2.57
2543 2966 7.882791 TGCTGAACTCTCAAAAATACCTATTGA 59.117 33.333 0.00 0.00 0.00 2.57
2544 2967 7.965107 GTGCTGAACTCTCAAAAATACCTATTG 59.035 37.037 0.00 0.00 0.00 1.90
2545 2968 7.121315 GGTGCTGAACTCTCAAAAATACCTATT 59.879 37.037 0.00 0.00 0.00 1.73
2546 2969 6.599638 GGTGCTGAACTCTCAAAAATACCTAT 59.400 38.462 0.00 0.00 0.00 2.57
2547 2970 5.938125 GGTGCTGAACTCTCAAAAATACCTA 59.062 40.000 0.00 0.00 0.00 3.08
2548 2971 4.762251 GGTGCTGAACTCTCAAAAATACCT 59.238 41.667 0.00 0.00 0.00 3.08
2549 2972 4.762251 AGGTGCTGAACTCTCAAAAATACC 59.238 41.667 0.00 0.00 0.00 2.73
2550 2973 5.948992 AGGTGCTGAACTCTCAAAAATAC 57.051 39.130 0.00 0.00 0.00 1.89
2551 2974 5.473504 GGAAGGTGCTGAACTCTCAAAAATA 59.526 40.000 0.00 0.00 0.00 1.40
2552 2975 4.279420 GGAAGGTGCTGAACTCTCAAAAAT 59.721 41.667 0.00 0.00 0.00 1.82
2553 2976 3.632145 GGAAGGTGCTGAACTCTCAAAAA 59.368 43.478 0.00 0.00 0.00 1.94
2554 2977 3.117888 AGGAAGGTGCTGAACTCTCAAAA 60.118 43.478 0.00 0.00 0.00 2.44
2555 2978 2.439507 AGGAAGGTGCTGAACTCTCAAA 59.560 45.455 0.00 0.00 0.00 2.69
2556 2979 2.050144 AGGAAGGTGCTGAACTCTCAA 58.950 47.619 0.00 0.00 0.00 3.02
2557 2980 1.345741 CAGGAAGGTGCTGAACTCTCA 59.654 52.381 0.00 0.00 38.14 3.27
2558 2981 1.346068 ACAGGAAGGTGCTGAACTCTC 59.654 52.381 3.61 0.00 38.14 3.20
2559 2982 1.346068 GACAGGAAGGTGCTGAACTCT 59.654 52.381 3.61 0.00 38.14 3.24
2560 2983 1.609320 GGACAGGAAGGTGCTGAACTC 60.609 57.143 3.61 0.00 38.14 3.01
2561 2984 0.398318 GGACAGGAAGGTGCTGAACT 59.602 55.000 3.61 0.00 38.14 3.01
2562 2985 0.398318 AGGACAGGAAGGTGCTGAAC 59.602 55.000 3.61 0.00 38.14 3.18
2563 2986 2.854253 AGGACAGGAAGGTGCTGAA 58.146 52.632 3.61 0.00 38.14 3.02
2564 2987 4.648007 AGGACAGGAAGGTGCTGA 57.352 55.556 3.61 0.00 38.14 4.26
2566 2989 1.821061 CGTCAGGACAGGAAGGTGCT 61.821 60.000 0.00 0.00 40.34 4.40
2567 2990 1.374758 CGTCAGGACAGGAAGGTGC 60.375 63.158 0.00 0.00 0.00 5.01
2568 2991 1.293498 CCGTCAGGACAGGAAGGTG 59.707 63.158 0.00 0.00 41.02 4.00
2569 2992 0.763223 AACCGTCAGGACAGGAAGGT 60.763 55.000 14.27 0.00 46.85 3.50
2570 2993 0.037232 GAACCGTCAGGACAGGAAGG 60.037 60.000 14.27 0.00 41.02 3.46
2571 2994 0.679505 TGAACCGTCAGGACAGGAAG 59.320 55.000 14.27 0.00 41.02 3.46
2572 2995 1.275291 GATGAACCGTCAGGACAGGAA 59.725 52.381 14.27 3.81 41.02 3.36
2573 2996 0.895530 GATGAACCGTCAGGACAGGA 59.104 55.000 14.27 0.00 41.02 3.86
2574 2997 0.898320 AGATGAACCGTCAGGACAGG 59.102 55.000 0.00 4.78 41.02 4.00
2575 2998 5.241728 TGATATAGATGAACCGTCAGGACAG 59.758 44.000 0.00 0.00 41.02 3.51
2576 2999 5.137551 TGATATAGATGAACCGTCAGGACA 58.862 41.667 0.00 0.00 41.02 4.02
2577 3000 5.704888 CTGATATAGATGAACCGTCAGGAC 58.295 45.833 0.00 0.00 41.02 3.85
2578 3001 5.966742 CTGATATAGATGAACCGTCAGGA 57.033 43.478 0.00 0.00 41.02 3.86
2579 3002 5.065704 CCTGATATAGATGAACCGTCAGG 57.934 47.826 4.33 4.33 43.48 3.86
2580 3003 5.713792 ACCTGATATAGATGAACCGTCAG 57.286 43.478 0.00 0.00 37.14 3.51
2581 3004 7.556635 CCTATACCTGATATAGATGAACCGTCA 59.443 40.741 0.00 0.00 43.98 4.35
2582 3005 7.468906 GCCTATACCTGATATAGATGAACCGTC 60.469 44.444 0.00 0.00 43.98 4.79
2583 3006 6.321690 GCCTATACCTGATATAGATGAACCGT 59.678 42.308 0.00 0.00 43.98 4.83
2584 3007 6.513556 CGCCTATACCTGATATAGATGAACCG 60.514 46.154 0.00 0.00 43.98 4.44
2585 3008 6.546403 TCGCCTATACCTGATATAGATGAACC 59.454 42.308 0.00 0.00 43.98 3.62
2586 3009 7.569639 TCGCCTATACCTGATATAGATGAAC 57.430 40.000 0.00 0.00 43.98 3.18
2587 3010 8.589701 TTTCGCCTATACCTGATATAGATGAA 57.410 34.615 0.00 0.00 43.98 2.57
2588 3011 8.768501 ATTTCGCCTATACCTGATATAGATGA 57.231 34.615 0.00 0.00 43.98 2.92
2589 3012 8.633561 TGATTTCGCCTATACCTGATATAGATG 58.366 37.037 0.00 0.00 43.98 2.90
2590 3013 8.768501 TGATTTCGCCTATACCTGATATAGAT 57.231 34.615 0.00 0.00 43.98 1.98
2591 3014 8.768501 ATGATTTCGCCTATACCTGATATAGA 57.231 34.615 0.00 0.00 43.98 1.98
2592 3015 8.855110 AGATGATTTCGCCTATACCTGATATAG 58.145 37.037 0.00 0.00 41.79 1.31
2593 3016 8.768501 AGATGATTTCGCCTATACCTGATATA 57.231 34.615 0.00 0.00 0.00 0.86
2594 3017 7.563188 AGAGATGATTTCGCCTATACCTGATAT 59.437 37.037 0.00 0.00 0.00 1.63
2595 3018 6.892456 AGAGATGATTTCGCCTATACCTGATA 59.108 38.462 0.00 0.00 0.00 2.15
2596 3019 5.719085 AGAGATGATTTCGCCTATACCTGAT 59.281 40.000 0.00 0.00 0.00 2.90
2597 3020 5.047731 CAGAGATGATTTCGCCTATACCTGA 60.048 44.000 0.00 0.00 0.00 3.86
2598 3021 5.167121 CAGAGATGATTTCGCCTATACCTG 58.833 45.833 0.00 0.00 0.00 4.00
2599 3022 4.322349 GCAGAGATGATTTCGCCTATACCT 60.322 45.833 0.00 0.00 0.00 3.08
2600 3023 3.929610 GCAGAGATGATTTCGCCTATACC 59.070 47.826 0.00 0.00 0.00 2.73
2601 3024 4.560128 TGCAGAGATGATTTCGCCTATAC 58.440 43.478 0.00 0.00 0.00 1.47
2602 3025 4.871933 TGCAGAGATGATTTCGCCTATA 57.128 40.909 0.00 0.00 0.00 1.31
2603 3026 3.758755 TGCAGAGATGATTTCGCCTAT 57.241 42.857 0.00 0.00 0.00 2.57
2604 3027 3.070015 TCATGCAGAGATGATTTCGCCTA 59.930 43.478 0.00 0.00 0.00 3.93
2605 3028 2.158856 TCATGCAGAGATGATTTCGCCT 60.159 45.455 0.00 0.00 0.00 5.52
2606 3029 2.216046 TCATGCAGAGATGATTTCGCC 58.784 47.619 0.00 0.00 0.00 5.54
2607 3030 3.497262 TGATCATGCAGAGATGATTTCGC 59.503 43.478 8.97 0.00 42.10 4.70
2608 3031 5.408604 TGATGATCATGCAGAGATGATTTCG 59.591 40.000 14.30 0.00 42.10 3.46
2609 3032 6.204882 TGTGATGATCATGCAGAGATGATTTC 59.795 38.462 14.30 6.95 42.10 2.17
2610 3033 6.062095 TGTGATGATCATGCAGAGATGATTT 58.938 36.000 14.30 0.00 42.10 2.17
2611 3034 5.621193 TGTGATGATCATGCAGAGATGATT 58.379 37.500 14.30 0.00 42.10 2.57
2612 3035 5.228945 TGTGATGATCATGCAGAGATGAT 57.771 39.130 14.30 4.76 44.24 2.45
2613 3036 4.682778 TGTGATGATCATGCAGAGATGA 57.317 40.909 14.30 0.00 36.78 2.92
2614 3037 5.057149 TCTTGTGATGATCATGCAGAGATG 58.943 41.667 14.30 4.87 0.00 2.90
2615 3038 5.291905 TCTTGTGATGATCATGCAGAGAT 57.708 39.130 14.30 4.26 0.00 2.75
2616 3039 4.748277 TCTTGTGATGATCATGCAGAGA 57.252 40.909 14.30 12.86 0.00 3.10
2617 3040 6.482308 TGTTATCTTGTGATGATCATGCAGAG 59.518 38.462 14.30 11.09 34.32 3.35
2618 3041 6.350906 TGTTATCTTGTGATGATCATGCAGA 58.649 36.000 14.30 8.82 34.32 4.26
2619 3042 6.613755 TGTTATCTTGTGATGATCATGCAG 57.386 37.500 14.30 3.48 34.32 4.41
2620 3043 7.067737 ACATTGTTATCTTGTGATGATCATGCA 59.932 33.333 14.30 9.12 34.32 3.96
2621 3044 7.423199 ACATTGTTATCTTGTGATGATCATGC 58.577 34.615 14.30 6.43 34.32 4.06
2624 3047 9.889128 TCTTACATTGTTATCTTGTGATGATCA 57.111 29.630 0.00 0.00 34.32 2.92
2626 3049 9.671279 TGTCTTACATTGTTATCTTGTGATGAT 57.329 29.630 0.00 0.00 34.32 2.45
2627 3050 9.500785 TTGTCTTACATTGTTATCTTGTGATGA 57.499 29.630 0.00 0.00 34.32 2.92
2628 3051 9.764870 CTTGTCTTACATTGTTATCTTGTGATG 57.235 33.333 0.00 0.00 34.32 3.07
2629 3052 9.507329 ACTTGTCTTACATTGTTATCTTGTGAT 57.493 29.630 0.00 0.00 36.74 3.06
2630 3053 8.902540 ACTTGTCTTACATTGTTATCTTGTGA 57.097 30.769 0.00 0.00 0.00 3.58
2631 3054 9.599322 GAACTTGTCTTACATTGTTATCTTGTG 57.401 33.333 0.00 0.00 29.72 3.33
2632 3055 9.337396 TGAACTTGTCTTACATTGTTATCTTGT 57.663 29.630 0.00 0.00 29.72 3.16
2633 3056 9.817365 CTGAACTTGTCTTACATTGTTATCTTG 57.183 33.333 0.00 0.00 29.72 3.02
2634 3057 9.778741 TCTGAACTTGTCTTACATTGTTATCTT 57.221 29.630 0.00 0.00 29.72 2.40
2635 3058 9.429359 CTCTGAACTTGTCTTACATTGTTATCT 57.571 33.333 0.00 0.00 29.72 1.98
2636 3059 9.424319 TCTCTGAACTTGTCTTACATTGTTATC 57.576 33.333 0.00 0.00 29.72 1.75
2637 3060 9.950496 ATCTCTGAACTTGTCTTACATTGTTAT 57.050 29.630 0.00 0.00 29.72 1.89
2639 3062 9.778741 TTATCTCTGAACTTGTCTTACATTGTT 57.221 29.630 0.00 0.00 31.32 2.83
2640 3063 9.429359 CTTATCTCTGAACTTGTCTTACATTGT 57.571 33.333 0.00 0.00 0.00 2.71
2641 3064 8.386606 GCTTATCTCTGAACTTGTCTTACATTG 58.613 37.037 0.00 0.00 0.00 2.82
2642 3065 7.550906 GGCTTATCTCTGAACTTGTCTTACATT 59.449 37.037 0.00 0.00 0.00 2.71
2643 3066 7.044798 GGCTTATCTCTGAACTTGTCTTACAT 58.955 38.462 0.00 0.00 0.00 2.29
2644 3067 6.398918 GGCTTATCTCTGAACTTGTCTTACA 58.601 40.000 0.00 0.00 0.00 2.41
2645 3068 5.813157 GGGCTTATCTCTGAACTTGTCTTAC 59.187 44.000 0.00 0.00 0.00 2.34
2646 3069 5.721960 AGGGCTTATCTCTGAACTTGTCTTA 59.278 40.000 0.00 0.00 0.00 2.10
2647 3070 4.534103 AGGGCTTATCTCTGAACTTGTCTT 59.466 41.667 0.00 0.00 0.00 3.01
2648 3071 4.100373 AGGGCTTATCTCTGAACTTGTCT 58.900 43.478 0.00 0.00 0.00 3.41
2649 3072 4.479786 AGGGCTTATCTCTGAACTTGTC 57.520 45.455 0.00 0.00 0.00 3.18
2650 3073 4.534103 AGAAGGGCTTATCTCTGAACTTGT 59.466 41.667 0.00 0.00 0.00 3.16
2651 3074 5.096443 AGAAGGGCTTATCTCTGAACTTG 57.904 43.478 0.00 0.00 0.00 3.16
2652 3075 6.198639 TCTAGAAGGGCTTATCTCTGAACTT 58.801 40.000 0.00 0.00 0.00 2.66
2653 3076 5.772004 TCTAGAAGGGCTTATCTCTGAACT 58.228 41.667 0.00 0.00 0.00 3.01
2654 3077 6.493458 AGATCTAGAAGGGCTTATCTCTGAAC 59.507 42.308 0.00 0.00 0.00 3.18
2655 3078 6.619464 AGATCTAGAAGGGCTTATCTCTGAA 58.381 40.000 0.00 0.00 0.00 3.02
2656 3079 6.212840 AGATCTAGAAGGGCTTATCTCTGA 57.787 41.667 0.00 0.00 0.00 3.27
2657 3080 8.415950 TTTAGATCTAGAAGGGCTTATCTCTG 57.584 38.462 2.02 0.00 33.06 3.35
2658 3081 8.866093 GTTTTAGATCTAGAAGGGCTTATCTCT 58.134 37.037 5.98 0.00 33.06 3.10
2659 3082 8.643324 TGTTTTAGATCTAGAAGGGCTTATCTC 58.357 37.037 5.98 0.00 33.06 2.75
2660 3083 8.554490 TGTTTTAGATCTAGAAGGGCTTATCT 57.446 34.615 5.98 0.00 34.43 1.98
2661 3084 9.785982 AATGTTTTAGATCTAGAAGGGCTTATC 57.214 33.333 5.98 0.00 0.00 1.75
2666 3089 9.157104 GCTATAATGTTTTAGATCTAGAAGGGC 57.843 37.037 5.98 0.00 0.00 5.19
2667 3090 9.660180 GGCTATAATGTTTTAGATCTAGAAGGG 57.340 37.037 5.98 0.00 0.00 3.95
2671 3094 9.658799 GCATGGCTATAATGTTTTAGATCTAGA 57.341 33.333 2.02 0.00 0.00 2.43
2672 3095 9.664332 AGCATGGCTATAATGTTTTAGATCTAG 57.336 33.333 2.02 0.00 36.99 2.43
2682 3105 8.796475 CCACTATTTTAGCATGGCTATAATGTT 58.204 33.333 18.12 7.18 40.79 2.71
2683 3106 7.394359 CCCACTATTTTAGCATGGCTATAATGT 59.606 37.037 18.12 13.06 40.79 2.71
2684 3107 7.611467 TCCCACTATTTTAGCATGGCTATAATG 59.389 37.037 18.12 12.64 40.79 1.90
2685 3108 7.698912 TCCCACTATTTTAGCATGGCTATAAT 58.301 34.615 14.99 14.99 42.30 1.28
2686 3109 7.085476 TCCCACTATTTTAGCATGGCTATAA 57.915 36.000 0.00 1.47 41.01 0.98
2687 3110 6.696042 TCCCACTATTTTAGCATGGCTATA 57.304 37.500 0.00 0.00 41.01 1.31
2688 3111 5.582950 TCCCACTATTTTAGCATGGCTAT 57.417 39.130 0.00 0.00 41.01 2.97
2689 3112 5.560724 GATCCCACTATTTTAGCATGGCTA 58.439 41.667 0.00 0.00 40.44 3.93
2690 3113 3.951563 TCCCACTATTTTAGCATGGCT 57.048 42.857 0.00 0.00 43.41 4.75
2691 3114 3.189287 CGATCCCACTATTTTAGCATGGC 59.811 47.826 0.00 0.00 0.00 4.40
2692 3115 4.641396 TCGATCCCACTATTTTAGCATGG 58.359 43.478 0.00 0.00 0.00 3.66
2693 3116 6.313905 GGTATCGATCCCACTATTTTAGCATG 59.686 42.308 0.00 0.00 0.00 4.06
2694 3117 6.407202 GGTATCGATCCCACTATTTTAGCAT 58.593 40.000 0.00 0.00 0.00 3.79
2695 3118 5.279809 GGGTATCGATCCCACTATTTTAGCA 60.280 44.000 21.31 0.00 44.05 3.49
2696 3119 5.176592 GGGTATCGATCCCACTATTTTAGC 58.823 45.833 21.31 3.29 44.05 3.09
2707 3130 2.320745 AACGTTTGGGTATCGATCCC 57.679 50.000 20.10 20.10 44.81 3.85
2708 3131 3.528532 AGAAACGTTTGGGTATCGATCC 58.471 45.455 20.10 3.07 0.00 3.36
2709 3132 4.628333 TCAAGAAACGTTTGGGTATCGATC 59.372 41.667 20.10 0.00 0.00 3.69
2710 3133 4.571919 TCAAGAAACGTTTGGGTATCGAT 58.428 39.130 20.10 2.16 0.00 3.59
2711 3134 3.991773 CTCAAGAAACGTTTGGGTATCGA 59.008 43.478 20.10 4.26 0.00 3.59
2712 3135 3.424433 GCTCAAGAAACGTTTGGGTATCG 60.424 47.826 20.10 1.94 0.00 2.92
2713 3136 3.751698 AGCTCAAGAAACGTTTGGGTATC 59.248 43.478 20.10 2.38 0.00 2.24
2714 3137 3.751518 AGCTCAAGAAACGTTTGGGTAT 58.248 40.909 20.10 0.00 0.00 2.73
2715 3138 3.135994 GAGCTCAAGAAACGTTTGGGTA 58.864 45.455 20.10 0.43 0.00 3.69
2716 3139 1.947456 GAGCTCAAGAAACGTTTGGGT 59.053 47.619 20.10 8.38 0.00 4.51
2717 3140 1.946768 TGAGCTCAAGAAACGTTTGGG 59.053 47.619 20.10 6.07 0.00 4.12
2718 3141 3.691049 TTGAGCTCAAGAAACGTTTGG 57.309 42.857 25.16 7.89 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.