Multiple sequence alignment - TraesCS1B01G250700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G250700 chr1B 100.000 2549 0 0 1 2549 442918183 442920731 0.000000e+00 4708
1 TraesCS1B01G250700 chr1B 94.334 1253 67 3 582 1834 56811093 56812341 0.000000e+00 1917
2 TraesCS1B01G250700 chr1B 92.435 1269 64 7 583 1834 663786494 663787747 0.000000e+00 1783
3 TraesCS1B01G250700 chr1B 93.103 493 29 4 102 590 135999337 135998846 0.000000e+00 717
4 TraesCS1B01G250700 chr1B 97.521 121 2 1 1 120 605909210 605909330 3.320000e-49 206
5 TraesCS1B01G250700 chr1B 98.291 117 1 1 1 117 44865545 44865430 1.200000e-48 204
6 TraesCS1B01G250700 chr7B 95.604 1251 49 3 584 1834 734145291 734146535 0.000000e+00 2001
7 TraesCS1B01G250700 chr7B 96.694 121 1 2 1 121 659004590 659004707 5.560000e-47 198
8 TraesCS1B01G250700 chr2B 93.375 1268 54 7 584 1834 384810181 384808927 0.000000e+00 1849
9 TraesCS1B01G250700 chr2B 92.812 1280 60 8 572 1834 544319653 544318389 0.000000e+00 1825
10 TraesCS1B01G250700 chr2B 92.656 1280 62 8 572 1834 543889482 543888218 0.000000e+00 1814
11 TraesCS1B01G250700 chr2B 91.943 1266 75 6 584 1834 565228142 565226889 0.000000e+00 1748
12 TraesCS1B01G250700 chr2B 93.750 816 37 5 1019 1834 695139807 695139006 0.000000e+00 1212
13 TraesCS1B01G250700 chr2B 94.215 484 25 2 102 583 318278671 318279153 0.000000e+00 736
14 TraesCS1B01G250700 chr3B 93.139 1268 56 7 584 1834 594400316 594399063 0.000000e+00 1831
15 TraesCS1B01G250700 chr3B 94.021 485 23 5 103 584 532334549 532335030 0.000000e+00 730
16 TraesCS1B01G250700 chr6A 92.108 1153 84 5 574 1725 57901149 57902295 0.000000e+00 1618
17 TraesCS1B01G250700 chr6A 92.052 1145 87 4 582 1725 203520914 203519773 0.000000e+00 1607
18 TraesCS1B01G250700 chr5D 92.167 1149 84 4 577 1725 275163204 275162062 0.000000e+00 1618
19 TraesCS1B01G250700 chr5D 94.722 720 32 6 1834 2549 248475654 248474937 0.000000e+00 1114
20 TraesCS1B01G250700 chr5D 94.008 484 25 3 103 583 407084542 407085024 0.000000e+00 730
21 TraesCS1B01G250700 chr5A 92.126 1143 82 5 584 1725 357171111 357169976 0.000000e+00 1605
22 TraesCS1B01G250700 chr2D 92.052 1145 85 2 581 1725 498471647 498470509 0.000000e+00 1605
23 TraesCS1B01G250700 chr2D 92.032 1142 79 6 584 1725 547242743 547241614 0.000000e+00 1594
24 TraesCS1B01G250700 chr2D 94.868 721 30 7 1834 2549 283765980 283765262 0.000000e+00 1120
25 TraesCS1B01G250700 chr2D 94.591 721 34 5 1833 2549 400741589 400740870 0.000000e+00 1110
26 TraesCS1B01G250700 chr1D 92.032 1142 86 3 584 1725 17040736 17039600 0.000000e+00 1600
27 TraesCS1B01G250700 chr1D 93.595 484 27 3 103 583 384989491 384989009 0.000000e+00 719
28 TraesCS1B01G250700 chr4D 95.284 721 28 6 1833 2549 50437530 50436812 0.000000e+00 1138
29 TraesCS1B01G250700 chr3D 94.861 720 31 6 1834 2549 127638506 127639223 0.000000e+00 1120
30 TraesCS1B01G250700 chr3D 94.766 726 27 8 1828 2549 319611923 319611205 0.000000e+00 1120
31 TraesCS1B01G250700 chr3D 94.223 727 35 6 1825 2549 364043061 364042340 0.000000e+00 1103
32 TraesCS1B01G250700 chr6D 94.847 718 34 3 1834 2549 212121576 212120860 0.000000e+00 1118
33 TraesCS1B01G250700 chr7D 94.613 724 34 5 1830 2549 514560163 514560885 0.000000e+00 1116
34 TraesCS1B01G250700 chr7D 93.996 483 25 3 103 583 457841144 457841624 0.000000e+00 728
35 TraesCS1B01G250700 chr5B 93.483 491 28 3 103 590 354156692 354157181 0.000000e+00 726
36 TraesCS1B01G250700 chr5B 93.595 484 27 3 103 583 315645103 315644621 0.000000e+00 719
37 TraesCS1B01G250700 chr6B 93.279 491 29 3 103 590 471593003 471593492 0.000000e+00 721
38 TraesCS1B01G250700 chr6B 100.000 108 0 0 1 108 269778666 269778773 1.550000e-47 200
39 TraesCS1B01G250700 chr4B 99.153 118 1 0 1 118 167729569 167729452 1.990000e-51 213
40 TraesCS1B01G250700 chr4A 98.305 118 0 2 1 116 601381939 601381822 3.320000e-49 206
41 TraesCS1B01G250700 chr1A 100.000 111 0 0 1 111 125452202 125452092 3.320000e-49 206
42 TraesCS1B01G250700 chr3A 93.525 139 6 3 1 138 109127322 109127186 1.200000e-48 204
43 TraesCS1B01G250700 chrUn 99.099 111 1 0 1 111 3472333 3472443 1.550000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G250700 chr1B 442918183 442920731 2548 False 4708 4708 100.000 1 2549 1 chr1B.!!$F2 2548
1 TraesCS1B01G250700 chr1B 56811093 56812341 1248 False 1917 1917 94.334 582 1834 1 chr1B.!!$F1 1252
2 TraesCS1B01G250700 chr1B 663786494 663787747 1253 False 1783 1783 92.435 583 1834 1 chr1B.!!$F4 1251
3 TraesCS1B01G250700 chr7B 734145291 734146535 1244 False 2001 2001 95.604 584 1834 1 chr7B.!!$F2 1250
4 TraesCS1B01G250700 chr2B 384808927 384810181 1254 True 1849 1849 93.375 584 1834 1 chr2B.!!$R1 1250
5 TraesCS1B01G250700 chr2B 544318389 544319653 1264 True 1825 1825 92.812 572 1834 1 chr2B.!!$R3 1262
6 TraesCS1B01G250700 chr2B 543888218 543889482 1264 True 1814 1814 92.656 572 1834 1 chr2B.!!$R2 1262
7 TraesCS1B01G250700 chr2B 565226889 565228142 1253 True 1748 1748 91.943 584 1834 1 chr2B.!!$R4 1250
8 TraesCS1B01G250700 chr2B 695139006 695139807 801 True 1212 1212 93.750 1019 1834 1 chr2B.!!$R5 815
9 TraesCS1B01G250700 chr3B 594399063 594400316 1253 True 1831 1831 93.139 584 1834 1 chr3B.!!$R1 1250
10 TraesCS1B01G250700 chr6A 57901149 57902295 1146 False 1618 1618 92.108 574 1725 1 chr6A.!!$F1 1151
11 TraesCS1B01G250700 chr6A 203519773 203520914 1141 True 1607 1607 92.052 582 1725 1 chr6A.!!$R1 1143
12 TraesCS1B01G250700 chr5D 275162062 275163204 1142 True 1618 1618 92.167 577 1725 1 chr5D.!!$R2 1148
13 TraesCS1B01G250700 chr5D 248474937 248475654 717 True 1114 1114 94.722 1834 2549 1 chr5D.!!$R1 715
14 TraesCS1B01G250700 chr5A 357169976 357171111 1135 True 1605 1605 92.126 584 1725 1 chr5A.!!$R1 1141
15 TraesCS1B01G250700 chr2D 498470509 498471647 1138 True 1605 1605 92.052 581 1725 1 chr2D.!!$R3 1144
16 TraesCS1B01G250700 chr2D 547241614 547242743 1129 True 1594 1594 92.032 584 1725 1 chr2D.!!$R4 1141
17 TraesCS1B01G250700 chr2D 283765262 283765980 718 True 1120 1120 94.868 1834 2549 1 chr2D.!!$R1 715
18 TraesCS1B01G250700 chr2D 400740870 400741589 719 True 1110 1110 94.591 1833 2549 1 chr2D.!!$R2 716
19 TraesCS1B01G250700 chr1D 17039600 17040736 1136 True 1600 1600 92.032 584 1725 1 chr1D.!!$R1 1141
20 TraesCS1B01G250700 chr4D 50436812 50437530 718 True 1138 1138 95.284 1833 2549 1 chr4D.!!$R1 716
21 TraesCS1B01G250700 chr3D 127638506 127639223 717 False 1120 1120 94.861 1834 2549 1 chr3D.!!$F1 715
22 TraesCS1B01G250700 chr3D 319611205 319611923 718 True 1120 1120 94.766 1828 2549 1 chr3D.!!$R1 721
23 TraesCS1B01G250700 chr3D 364042340 364043061 721 True 1103 1103 94.223 1825 2549 1 chr3D.!!$R2 724
24 TraesCS1B01G250700 chr6D 212120860 212121576 716 True 1118 1118 94.847 1834 2549 1 chr6D.!!$R1 715
25 TraesCS1B01G250700 chr7D 514560163 514560885 722 False 1116 1116 94.613 1830 2549 1 chr7D.!!$F2 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.033796 TCCGATACGTGACCCTTCCT 60.034 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1938 0.550914 AAGTGACTTGGGCAGAACCA 59.449 50.0 0.0 0.0 42.05 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.437746 GAAGGGCCTGAACTCGTAC 57.562 57.895 6.92 0.00 0.00 3.67
19 20 0.606604 GAAGGGCCTGAACTCGTACA 59.393 55.000 6.92 0.00 0.00 2.90
20 21 1.207329 GAAGGGCCTGAACTCGTACAT 59.793 52.381 6.92 0.00 0.00 2.29
21 22 0.824759 AGGGCCTGAACTCGTACATC 59.175 55.000 4.50 0.00 0.00 3.06
22 23 0.179081 GGGCCTGAACTCGTACATCC 60.179 60.000 0.84 0.00 0.00 3.51
23 24 0.824759 GGCCTGAACTCGTACATCCT 59.175 55.000 0.00 0.00 0.00 3.24
24 25 1.207329 GGCCTGAACTCGTACATCCTT 59.793 52.381 0.00 0.00 0.00 3.36
25 26 2.354805 GGCCTGAACTCGTACATCCTTT 60.355 50.000 0.00 0.00 0.00 3.11
26 27 2.673368 GCCTGAACTCGTACATCCTTTG 59.327 50.000 0.00 0.00 0.00 2.77
27 28 3.864921 GCCTGAACTCGTACATCCTTTGT 60.865 47.826 0.00 0.00 42.62 2.83
28 29 3.679980 CCTGAACTCGTACATCCTTTGTG 59.320 47.826 0.00 0.00 39.48 3.33
29 30 3.064207 TGAACTCGTACATCCTTTGTGC 58.936 45.455 0.00 0.00 39.48 4.57
30 31 3.244078 TGAACTCGTACATCCTTTGTGCT 60.244 43.478 0.00 0.00 38.66 4.40
31 32 3.402628 ACTCGTACATCCTTTGTGCTT 57.597 42.857 0.00 0.00 38.66 3.91
32 33 4.530710 ACTCGTACATCCTTTGTGCTTA 57.469 40.909 0.00 0.00 38.66 3.09
33 34 4.243270 ACTCGTACATCCTTTGTGCTTAC 58.757 43.478 0.00 0.00 38.66 2.34
34 35 4.242475 CTCGTACATCCTTTGTGCTTACA 58.758 43.478 0.00 0.00 38.66 2.41
35 36 4.633175 TCGTACATCCTTTGTGCTTACAA 58.367 39.130 0.00 0.00 38.66 2.41
36 37 4.449743 TCGTACATCCTTTGTGCTTACAAC 59.550 41.667 0.00 0.00 38.66 3.32
37 38 4.378046 CGTACATCCTTTGTGCTTACAACC 60.378 45.833 0.00 0.00 38.66 3.77
38 39 3.832527 ACATCCTTTGTGCTTACAACCT 58.167 40.909 0.00 0.00 37.11 3.50
39 40 3.821033 ACATCCTTTGTGCTTACAACCTC 59.179 43.478 0.00 0.00 37.11 3.85
40 41 3.857157 TCCTTTGTGCTTACAACCTCT 57.143 42.857 0.00 0.00 0.00 3.69
41 42 3.740115 TCCTTTGTGCTTACAACCTCTC 58.260 45.455 0.00 0.00 0.00 3.20
42 43 2.814336 CCTTTGTGCTTACAACCTCTCC 59.186 50.000 0.00 0.00 0.00 3.71
43 44 3.476552 CTTTGTGCTTACAACCTCTCCA 58.523 45.455 0.00 0.00 0.00 3.86
44 45 3.788227 TTGTGCTTACAACCTCTCCAT 57.212 42.857 0.00 0.00 0.00 3.41
45 46 4.901197 TTGTGCTTACAACCTCTCCATA 57.099 40.909 0.00 0.00 0.00 2.74
46 47 4.471904 TGTGCTTACAACCTCTCCATAG 57.528 45.455 0.00 0.00 0.00 2.23
47 48 3.198872 GTGCTTACAACCTCTCCATAGC 58.801 50.000 0.00 0.00 0.00 2.97
48 49 3.107601 TGCTTACAACCTCTCCATAGCT 58.892 45.455 0.00 0.00 0.00 3.32
49 50 4.099573 GTGCTTACAACCTCTCCATAGCTA 59.900 45.833 0.00 0.00 0.00 3.32
50 51 4.342378 TGCTTACAACCTCTCCATAGCTAG 59.658 45.833 0.00 0.00 0.00 3.42
51 52 4.262249 GCTTACAACCTCTCCATAGCTAGG 60.262 50.000 0.00 0.00 35.14 3.02
52 53 3.689872 ACAACCTCTCCATAGCTAGGA 57.310 47.619 7.04 9.11 33.16 2.94
53 54 3.301274 ACAACCTCTCCATAGCTAGGAC 58.699 50.000 7.04 0.00 33.16 3.85
54 55 2.630580 CAACCTCTCCATAGCTAGGACC 59.369 54.545 7.04 0.00 33.16 4.46
55 56 2.148702 ACCTCTCCATAGCTAGGACCT 58.851 52.381 7.04 0.00 33.16 3.85
56 57 2.520549 ACCTCTCCATAGCTAGGACCTT 59.479 50.000 7.04 0.00 33.16 3.50
57 58 2.896685 CCTCTCCATAGCTAGGACCTTG 59.103 54.545 7.04 0.00 0.00 3.61
58 59 2.298729 CTCTCCATAGCTAGGACCTTGC 59.701 54.545 18.95 18.95 32.79 4.01
59 60 1.346068 CTCCATAGCTAGGACCTTGCC 59.654 57.143 22.23 6.76 33.03 4.52
60 61 1.062121 TCCATAGCTAGGACCTTGCCT 60.062 52.381 22.23 13.04 42.15 4.75
61 62 1.346068 CCATAGCTAGGACCTTGCCTC 59.654 57.143 22.23 0.00 39.50 4.70
62 63 2.324541 CATAGCTAGGACCTTGCCTCT 58.675 52.381 22.23 8.59 39.50 3.69
63 64 2.074729 TAGCTAGGACCTTGCCTCTC 57.925 55.000 22.23 0.00 39.50 3.20
64 65 0.689412 AGCTAGGACCTTGCCTCTCC 60.689 60.000 22.23 0.00 39.50 3.71
65 66 0.978146 GCTAGGACCTTGCCTCTCCA 60.978 60.000 16.20 0.00 39.50 3.86
66 67 1.799933 CTAGGACCTTGCCTCTCCAT 58.200 55.000 0.00 0.00 39.50 3.41
67 68 2.964209 CTAGGACCTTGCCTCTCCATA 58.036 52.381 0.00 0.00 39.50 2.74
68 69 1.501582 AGGACCTTGCCTCTCCATAC 58.498 55.000 0.00 0.00 30.76 2.39
69 70 0.470341 GGACCTTGCCTCTCCATACC 59.530 60.000 0.00 0.00 0.00 2.73
70 71 1.501582 GACCTTGCCTCTCCATACCT 58.498 55.000 0.00 0.00 0.00 3.08
71 72 2.679082 GACCTTGCCTCTCCATACCTA 58.321 52.381 0.00 0.00 0.00 3.08
72 73 2.365941 GACCTTGCCTCTCCATACCTAC 59.634 54.545 0.00 0.00 0.00 3.18
73 74 1.694696 CCTTGCCTCTCCATACCTACC 59.305 57.143 0.00 0.00 0.00 3.18
74 75 1.694696 CTTGCCTCTCCATACCTACCC 59.305 57.143 0.00 0.00 0.00 3.69
75 76 0.105142 TGCCTCTCCATACCTACCCC 60.105 60.000 0.00 0.00 0.00 4.95
76 77 0.836830 GCCTCTCCATACCTACCCCC 60.837 65.000 0.00 0.00 0.00 5.40
91 92 2.596776 CCCCCACTCTACTGTCAGG 58.403 63.158 4.53 0.00 0.00 3.86
92 93 1.617947 CCCCCACTCTACTGTCAGGC 61.618 65.000 4.53 0.00 0.00 4.85
93 94 0.616111 CCCCACTCTACTGTCAGGCT 60.616 60.000 4.53 0.00 0.00 4.58
94 95 1.270907 CCCACTCTACTGTCAGGCTT 58.729 55.000 4.53 0.00 0.00 4.35
95 96 2.457598 CCCACTCTACTGTCAGGCTTA 58.542 52.381 4.53 0.00 0.00 3.09
96 97 2.428890 CCCACTCTACTGTCAGGCTTAG 59.571 54.545 4.53 0.00 0.00 2.18
97 98 3.357203 CCACTCTACTGTCAGGCTTAGA 58.643 50.000 4.53 2.00 0.00 2.10
98 99 3.764434 CCACTCTACTGTCAGGCTTAGAA 59.236 47.826 4.53 0.00 0.00 2.10
99 100 4.381079 CCACTCTACTGTCAGGCTTAGAAC 60.381 50.000 4.53 0.00 0.00 3.01
100 101 3.764972 ACTCTACTGTCAGGCTTAGAACC 59.235 47.826 4.53 0.00 0.00 3.62
101 102 3.764434 CTCTACTGTCAGGCTTAGAACCA 59.236 47.826 4.53 0.00 0.00 3.67
102 103 2.841442 ACTGTCAGGCTTAGAACCAC 57.159 50.000 4.53 0.00 0.00 4.16
103 104 1.000955 ACTGTCAGGCTTAGAACCACG 59.999 52.381 4.53 0.00 0.00 4.94
104 105 1.272490 CTGTCAGGCTTAGAACCACGA 59.728 52.381 0.00 0.00 0.00 4.35
105 106 1.000506 TGTCAGGCTTAGAACCACGAC 59.999 52.381 0.00 0.00 34.27 4.34
106 107 1.000506 GTCAGGCTTAGAACCACGACA 59.999 52.381 0.00 0.00 34.01 4.35
107 108 1.272490 TCAGGCTTAGAACCACGACAG 59.728 52.381 0.00 0.00 0.00 3.51
108 109 0.608640 AGGCTTAGAACCACGACAGG 59.391 55.000 0.00 0.00 0.00 4.00
109 110 0.391263 GGCTTAGAACCACGACAGGG 60.391 60.000 0.00 0.00 0.00 4.45
110 111 1.019805 GCTTAGAACCACGACAGGGC 61.020 60.000 0.00 0.00 0.00 5.19
111 112 0.391263 CTTAGAACCACGACAGGGCC 60.391 60.000 0.00 0.00 0.00 5.80
112 113 0.834687 TTAGAACCACGACAGGGCCT 60.835 55.000 0.00 0.00 0.00 5.19
113 114 0.040058 TAGAACCACGACAGGGCCTA 59.960 55.000 5.28 0.00 0.00 3.93
114 115 0.617820 AGAACCACGACAGGGCCTAT 60.618 55.000 5.28 0.00 0.00 2.57
115 116 0.179081 GAACCACGACAGGGCCTATC 60.179 60.000 5.28 2.64 0.00 2.08
116 117 0.617820 AACCACGACAGGGCCTATCT 60.618 55.000 10.63 0.00 0.00 1.98
117 118 0.617820 ACCACGACAGGGCCTATCTT 60.618 55.000 10.63 0.00 0.00 2.40
118 119 0.541863 CCACGACAGGGCCTATCTTT 59.458 55.000 10.63 0.00 0.00 2.52
119 120 1.065418 CCACGACAGGGCCTATCTTTT 60.065 52.381 10.63 0.00 0.00 2.27
120 121 2.169769 CCACGACAGGGCCTATCTTTTA 59.830 50.000 10.63 0.00 0.00 1.52
121 122 3.195661 CACGACAGGGCCTATCTTTTAC 58.804 50.000 10.63 0.00 0.00 2.01
122 123 3.105283 ACGACAGGGCCTATCTTTTACT 58.895 45.455 10.63 0.00 0.00 2.24
123 124 3.518303 ACGACAGGGCCTATCTTTTACTT 59.482 43.478 10.63 0.00 0.00 2.24
124 125 4.019591 ACGACAGGGCCTATCTTTTACTTT 60.020 41.667 10.63 0.00 0.00 2.66
125 126 4.941873 CGACAGGGCCTATCTTTTACTTTT 59.058 41.667 10.63 0.00 0.00 2.27
126 127 6.110707 CGACAGGGCCTATCTTTTACTTTTA 58.889 40.000 10.63 0.00 0.00 1.52
127 128 6.766467 CGACAGGGCCTATCTTTTACTTTTAT 59.234 38.462 10.63 0.00 0.00 1.40
128 129 7.254795 CGACAGGGCCTATCTTTTACTTTTATG 60.255 40.741 10.63 0.00 0.00 1.90
129 130 7.410991 ACAGGGCCTATCTTTTACTTTTATGT 58.589 34.615 5.28 0.00 0.00 2.29
130 131 8.554011 ACAGGGCCTATCTTTTACTTTTATGTA 58.446 33.333 5.28 0.00 0.00 2.29
131 132 9.574516 CAGGGCCTATCTTTTACTTTTATGTAT 57.425 33.333 5.28 0.00 0.00 2.29
149 150 9.461312 TTTATGTATTTACCTTCATGCAAGAGT 57.539 29.630 0.00 0.00 33.29 3.24
150 151 7.944729 ATGTATTTACCTTCATGCAAGAGTT 57.055 32.000 0.00 0.00 33.29 3.01
152 153 8.856153 TGTATTTACCTTCATGCAAGAGTTAA 57.144 30.769 0.00 0.00 33.29 2.01
153 154 9.290988 TGTATTTACCTTCATGCAAGAGTTAAA 57.709 29.630 0.00 0.00 33.29 1.52
154 155 9.774742 GTATTTACCTTCATGCAAGAGTTAAAG 57.225 33.333 0.00 0.00 33.29 1.85
155 156 7.817418 TTTACCTTCATGCAAGAGTTAAAGT 57.183 32.000 0.00 0.00 33.29 2.66
156 157 7.817418 TTACCTTCATGCAAGAGTTAAAGTT 57.183 32.000 0.00 0.00 33.29 2.66
157 158 6.319141 ACCTTCATGCAAGAGTTAAAGTTC 57.681 37.500 0.00 0.00 33.29 3.01
158 159 6.064717 ACCTTCATGCAAGAGTTAAAGTTCT 58.935 36.000 0.00 0.00 33.29 3.01
159 160 6.547510 ACCTTCATGCAAGAGTTAAAGTTCTT 59.452 34.615 0.00 0.00 33.29 2.52
160 161 7.080724 CCTTCATGCAAGAGTTAAAGTTCTTC 58.919 38.462 0.00 0.00 33.29 2.87
161 162 7.040823 CCTTCATGCAAGAGTTAAAGTTCTTCT 60.041 37.037 0.00 0.00 33.29 2.85
162 163 8.902540 TTCATGCAAGAGTTAAAGTTCTTCTA 57.097 30.769 0.00 0.00 31.53 2.10
163 164 9.507329 TTCATGCAAGAGTTAAAGTTCTTCTAT 57.493 29.630 0.00 0.00 31.53 1.98
164 165 9.155975 TCATGCAAGAGTTAAAGTTCTTCTATC 57.844 33.333 0.00 0.00 31.53 2.08
165 166 9.160496 CATGCAAGAGTTAAAGTTCTTCTATCT 57.840 33.333 0.00 0.00 31.53 1.98
192 193 9.625747 ATTCCTTTTTATTTTCTCTTTTGGCAA 57.374 25.926 0.00 0.00 0.00 4.52
193 194 8.661352 TCCTTTTTATTTTCTCTTTTGGCAAG 57.339 30.769 0.00 0.00 0.00 4.01
194 195 7.226523 TCCTTTTTATTTTCTCTTTTGGCAAGC 59.773 33.333 0.00 0.00 0.00 4.01
195 196 7.012232 CCTTTTTATTTTCTCTTTTGGCAAGCA 59.988 33.333 0.00 0.00 0.00 3.91
196 197 8.449251 TTTTTATTTTCTCTTTTGGCAAGCAT 57.551 26.923 0.00 0.00 0.00 3.79
197 198 7.656707 TTTATTTTCTCTTTTGGCAAGCATC 57.343 32.000 0.00 0.00 0.00 3.91
198 199 4.669206 TTTTCTCTTTTGGCAAGCATCA 57.331 36.364 0.00 0.00 0.00 3.07
199 200 4.877378 TTTCTCTTTTGGCAAGCATCAT 57.123 36.364 0.00 0.00 0.00 2.45
200 201 3.861276 TCTCTTTTGGCAAGCATCATG 57.139 42.857 0.00 0.00 0.00 3.07
201 202 3.159472 TCTCTTTTGGCAAGCATCATGT 58.841 40.909 0.00 0.00 0.00 3.21
202 203 3.057104 TCTCTTTTGGCAAGCATCATGTG 60.057 43.478 0.00 0.00 0.00 3.21
203 204 2.028839 TCTTTTGGCAAGCATCATGTGG 60.029 45.455 0.00 0.00 0.00 4.17
204 205 1.340088 TTTGGCAAGCATCATGTGGT 58.660 45.000 0.00 0.00 41.11 4.16
205 206 2.212812 TTGGCAAGCATCATGTGGTA 57.787 45.000 0.00 0.00 37.63 3.25
206 207 2.212812 TGGCAAGCATCATGTGGTAA 57.787 45.000 0.00 0.00 37.63 2.85
207 208 2.093890 TGGCAAGCATCATGTGGTAAG 58.906 47.619 0.00 0.00 37.63 2.34
208 209 1.406539 GGCAAGCATCATGTGGTAAGG 59.593 52.381 0.00 0.00 37.63 2.69
209 210 2.368439 GCAAGCATCATGTGGTAAGGA 58.632 47.619 0.00 0.00 37.63 3.36
210 211 2.754552 GCAAGCATCATGTGGTAAGGAA 59.245 45.455 0.00 0.00 37.63 3.36
211 212 3.193267 GCAAGCATCATGTGGTAAGGAAA 59.807 43.478 0.00 0.00 37.63 3.13
212 213 4.142093 GCAAGCATCATGTGGTAAGGAAAT 60.142 41.667 0.00 0.00 37.63 2.17
213 214 5.067674 GCAAGCATCATGTGGTAAGGAAATA 59.932 40.000 0.00 0.00 37.63 1.40
214 215 6.239120 GCAAGCATCATGTGGTAAGGAAATAT 60.239 38.462 0.00 0.00 37.63 1.28
215 216 7.365741 CAAGCATCATGTGGTAAGGAAATATC 58.634 38.462 0.00 0.00 37.63 1.63
216 217 6.845908 AGCATCATGTGGTAAGGAAATATCT 58.154 36.000 0.00 0.00 36.63 1.98
217 218 7.977818 AGCATCATGTGGTAAGGAAATATCTA 58.022 34.615 0.00 0.00 36.63 1.98
218 219 8.099537 AGCATCATGTGGTAAGGAAATATCTAG 58.900 37.037 0.00 0.00 36.63 2.43
219 220 7.335422 GCATCATGTGGTAAGGAAATATCTAGG 59.665 40.741 0.00 0.00 0.00 3.02
220 221 6.769512 TCATGTGGTAAGGAAATATCTAGGC 58.230 40.000 0.00 0.00 0.00 3.93
221 222 6.328934 TCATGTGGTAAGGAAATATCTAGGCA 59.671 38.462 0.00 0.00 0.00 4.75
222 223 5.925509 TGTGGTAAGGAAATATCTAGGCAC 58.074 41.667 0.00 0.00 0.00 5.01
223 224 5.427157 TGTGGTAAGGAAATATCTAGGCACA 59.573 40.000 0.00 0.00 0.00 4.57
224 225 6.101150 TGTGGTAAGGAAATATCTAGGCACAT 59.899 38.462 0.00 0.00 0.00 3.21
225 226 7.291416 TGTGGTAAGGAAATATCTAGGCACATA 59.709 37.037 0.00 0.00 0.00 2.29
226 227 8.322091 GTGGTAAGGAAATATCTAGGCACATAT 58.678 37.037 0.00 0.00 0.00 1.78
227 228 9.555411 TGGTAAGGAAATATCTAGGCACATATA 57.445 33.333 0.00 0.00 0.00 0.86
231 232 8.860517 AGGAAATATCTAGGCACATATATCCA 57.139 34.615 0.00 0.00 0.00 3.41
232 233 8.932610 AGGAAATATCTAGGCACATATATCCAG 58.067 37.037 0.00 0.00 0.00 3.86
233 234 8.709308 GGAAATATCTAGGCACATATATCCAGT 58.291 37.037 0.00 0.00 0.00 4.00
235 236 9.896645 AAATATCTAGGCACATATATCCAGTTG 57.103 33.333 0.00 0.00 0.00 3.16
236 237 8.844865 ATATCTAGGCACATATATCCAGTTGA 57.155 34.615 0.00 0.00 0.00 3.18
237 238 6.994421 TCTAGGCACATATATCCAGTTGAA 57.006 37.500 0.00 0.00 0.00 2.69
238 239 7.559335 TCTAGGCACATATATCCAGTTGAAT 57.441 36.000 0.00 0.00 0.00 2.57
239 240 8.664669 TCTAGGCACATATATCCAGTTGAATA 57.335 34.615 0.00 0.00 0.00 1.75
240 241 9.271921 TCTAGGCACATATATCCAGTTGAATAT 57.728 33.333 0.00 0.00 0.00 1.28
241 242 9.322773 CTAGGCACATATATCCAGTTGAATATG 57.677 37.037 0.00 0.00 37.98 1.78
242 243 7.114754 AGGCACATATATCCAGTTGAATATGG 58.885 38.462 0.00 0.00 36.87 2.74
243 244 6.319658 GGCACATATATCCAGTTGAATATGGG 59.680 42.308 0.00 0.00 38.29 4.00
244 245 6.886459 GCACATATATCCAGTTGAATATGGGT 59.114 38.462 5.58 0.00 37.80 4.51
245 246 8.046708 GCACATATATCCAGTTGAATATGGGTA 58.953 37.037 5.58 0.00 37.80 3.69
246 247 9.605275 CACATATATCCAGTTGAATATGGGTAG 57.395 37.037 0.00 0.00 35.66 3.18
247 248 8.267894 ACATATATCCAGTTGAATATGGGTAGC 58.732 37.037 0.00 0.00 35.66 3.58
248 249 6.702449 ATATCCAGTTGAATATGGGTAGCA 57.298 37.500 0.00 0.00 35.66 3.49
249 250 5.589367 ATCCAGTTGAATATGGGTAGCAT 57.411 39.130 0.00 0.00 37.19 3.79
250 251 4.717877 TCCAGTTGAATATGGGTAGCATG 58.282 43.478 0.00 0.00 37.19 4.06
251 252 4.411869 TCCAGTTGAATATGGGTAGCATGA 59.588 41.667 0.00 0.00 37.19 3.07
252 253 4.758674 CCAGTTGAATATGGGTAGCATGAG 59.241 45.833 0.00 0.00 32.63 2.90
253 254 5.371526 CAGTTGAATATGGGTAGCATGAGT 58.628 41.667 0.00 0.00 0.00 3.41
254 255 6.464322 CCAGTTGAATATGGGTAGCATGAGTA 60.464 42.308 0.00 0.00 32.63 2.59
255 256 6.992123 CAGTTGAATATGGGTAGCATGAGTAA 59.008 38.462 0.00 0.00 0.00 2.24
256 257 7.663081 CAGTTGAATATGGGTAGCATGAGTAAT 59.337 37.037 0.00 0.00 0.00 1.89
257 258 8.220559 AGTTGAATATGGGTAGCATGAGTAATT 58.779 33.333 0.00 0.00 0.00 1.40
258 259 9.502091 GTTGAATATGGGTAGCATGAGTAATTA 57.498 33.333 0.00 0.00 0.00 1.40
264 265 8.766994 ATGGGTAGCATGAGTAATTATTGTTT 57.233 30.769 0.00 0.00 0.00 2.83
265 266 9.860650 ATGGGTAGCATGAGTAATTATTGTTTA 57.139 29.630 0.00 0.00 0.00 2.01
266 267 9.116067 TGGGTAGCATGAGTAATTATTGTTTAC 57.884 33.333 0.00 0.00 0.00 2.01
267 268 9.116067 GGGTAGCATGAGTAATTATTGTTTACA 57.884 33.333 0.00 0.00 33.02 2.41
272 273 9.450807 GCATGAGTAATTATTGTTTACATCACC 57.549 33.333 0.00 0.00 33.02 4.02
273 274 9.950680 CATGAGTAATTATTGTTTACATCACCC 57.049 33.333 0.00 0.00 33.02 4.61
274 275 9.920946 ATGAGTAATTATTGTTTACATCACCCT 57.079 29.630 0.00 0.00 33.02 4.34
275 276 9.747898 TGAGTAATTATTGTTTACATCACCCTT 57.252 29.630 0.00 0.00 33.02 3.95
277 278 9.747898 AGTAATTATTGTTTACATCACCCTTGA 57.252 29.630 0.00 0.00 33.02 3.02
279 280 7.645058 ATTATTGTTTACATCACCCTTGAGG 57.355 36.000 0.00 0.00 39.54 3.86
292 293 3.290710 CCCTTGAGGTGAATATGTTGGG 58.709 50.000 0.00 0.00 0.00 4.12
293 294 3.053693 CCCTTGAGGTGAATATGTTGGGA 60.054 47.826 0.00 0.00 33.14 4.37
294 295 4.202441 CCTTGAGGTGAATATGTTGGGAG 58.798 47.826 0.00 0.00 0.00 4.30
295 296 3.931907 TGAGGTGAATATGTTGGGAGG 57.068 47.619 0.00 0.00 0.00 4.30
296 297 2.092429 TGAGGTGAATATGTTGGGAGGC 60.092 50.000 0.00 0.00 0.00 4.70
297 298 1.134098 AGGTGAATATGTTGGGAGGCG 60.134 52.381 0.00 0.00 0.00 5.52
298 299 1.134220 GGTGAATATGTTGGGAGGCGA 60.134 52.381 0.00 0.00 0.00 5.54
299 300 2.639065 GTGAATATGTTGGGAGGCGAA 58.361 47.619 0.00 0.00 0.00 4.70
300 301 3.013921 GTGAATATGTTGGGAGGCGAAA 58.986 45.455 0.00 0.00 0.00 3.46
301 302 3.013921 TGAATATGTTGGGAGGCGAAAC 58.986 45.455 0.00 0.00 0.00 2.78
302 303 3.279434 GAATATGTTGGGAGGCGAAACT 58.721 45.455 0.00 0.00 0.00 2.66
303 304 4.080807 TGAATATGTTGGGAGGCGAAACTA 60.081 41.667 0.00 0.00 0.00 2.24
304 305 4.706842 ATATGTTGGGAGGCGAAACTAT 57.293 40.909 0.00 0.00 0.00 2.12
305 306 5.818678 ATATGTTGGGAGGCGAAACTATA 57.181 39.130 0.00 0.00 0.00 1.31
306 307 3.985019 TGTTGGGAGGCGAAACTATAA 57.015 42.857 0.00 0.00 0.00 0.98
307 308 3.869065 TGTTGGGAGGCGAAACTATAAG 58.131 45.455 0.00 0.00 0.00 1.73
308 309 2.612672 GTTGGGAGGCGAAACTATAAGC 59.387 50.000 0.00 0.00 0.00 3.09
314 315 3.697619 GGCGAAACTATAAGCCCCTAT 57.302 47.619 0.00 0.00 43.54 2.57
315 316 3.597255 GGCGAAACTATAAGCCCCTATC 58.403 50.000 0.00 0.00 43.54 2.08
316 317 3.261137 GGCGAAACTATAAGCCCCTATCT 59.739 47.826 0.00 0.00 43.54 1.98
317 318 4.262938 GGCGAAACTATAAGCCCCTATCTT 60.263 45.833 0.00 0.00 43.54 2.40
318 319 5.306394 GCGAAACTATAAGCCCCTATCTTT 58.694 41.667 0.00 0.00 0.00 2.52
319 320 5.408909 GCGAAACTATAAGCCCCTATCTTTC 59.591 44.000 0.00 0.00 0.00 2.62
320 321 6.741801 GCGAAACTATAAGCCCCTATCTTTCT 60.742 42.308 0.00 0.00 0.00 2.52
321 322 7.525029 GCGAAACTATAAGCCCCTATCTTTCTA 60.525 40.741 0.00 0.00 0.00 2.10
322 323 8.532819 CGAAACTATAAGCCCCTATCTTTCTAT 58.467 37.037 0.00 0.00 0.00 1.98
323 324 9.660180 GAAACTATAAGCCCCTATCTTTCTATG 57.340 37.037 0.00 0.00 0.00 2.23
324 325 8.743636 AACTATAAGCCCCTATCTTTCTATGT 57.256 34.615 0.00 0.00 0.00 2.29
325 326 8.140112 ACTATAAGCCCCTATCTTTCTATGTG 57.860 38.462 0.00 0.00 0.00 3.21
326 327 7.735321 ACTATAAGCCCCTATCTTTCTATGTGT 59.265 37.037 0.00 0.00 0.00 3.72
327 328 4.965200 AGCCCCTATCTTTCTATGTGTC 57.035 45.455 0.00 0.00 0.00 3.67
328 329 3.648545 AGCCCCTATCTTTCTATGTGTCC 59.351 47.826 0.00 0.00 0.00 4.02
329 330 3.555168 GCCCCTATCTTTCTATGTGTCCG 60.555 52.174 0.00 0.00 0.00 4.79
330 331 3.895656 CCCCTATCTTTCTATGTGTCCGA 59.104 47.826 0.00 0.00 0.00 4.55
331 332 4.528596 CCCCTATCTTTCTATGTGTCCGAT 59.471 45.833 0.00 0.00 0.00 4.18
332 333 5.012148 CCCCTATCTTTCTATGTGTCCGATT 59.988 44.000 0.00 0.00 0.00 3.34
333 334 5.928839 CCCTATCTTTCTATGTGTCCGATTG 59.071 44.000 0.00 0.00 0.00 2.67
334 335 6.239317 CCCTATCTTTCTATGTGTCCGATTGA 60.239 42.308 0.00 0.00 0.00 2.57
335 336 7.210174 CCTATCTTTCTATGTGTCCGATTGAA 58.790 38.462 0.00 0.00 0.00 2.69
336 337 7.710907 CCTATCTTTCTATGTGTCCGATTGAAA 59.289 37.037 0.00 0.00 0.00 2.69
337 338 6.721571 TCTTTCTATGTGTCCGATTGAAAC 57.278 37.500 0.00 0.00 0.00 2.78
338 339 5.347635 TCTTTCTATGTGTCCGATTGAAACG 59.652 40.000 0.00 0.00 33.49 3.60
339 340 4.182693 TCTATGTGTCCGATTGAAACGT 57.817 40.909 0.00 0.00 33.49 3.99
340 341 4.562082 TCTATGTGTCCGATTGAAACGTT 58.438 39.130 0.00 0.00 33.49 3.99
341 342 4.992319 TCTATGTGTCCGATTGAAACGTTT 59.008 37.500 14.57 14.57 33.49 3.60
342 343 4.561735 ATGTGTCCGATTGAAACGTTTT 57.438 36.364 15.89 0.00 33.49 2.43
343 344 3.686128 TGTGTCCGATTGAAACGTTTTG 58.314 40.909 15.89 3.42 33.49 2.44
344 345 2.466205 GTGTCCGATTGAAACGTTTTGC 59.534 45.455 15.89 3.77 0.00 3.68
345 346 2.356382 TGTCCGATTGAAACGTTTTGCT 59.644 40.909 15.89 2.43 0.00 3.91
346 347 2.971261 GTCCGATTGAAACGTTTTGCTC 59.029 45.455 15.89 10.61 0.00 4.26
347 348 2.614520 TCCGATTGAAACGTTTTGCTCA 59.385 40.909 15.89 5.59 0.00 4.26
348 349 3.252215 TCCGATTGAAACGTTTTGCTCAT 59.748 39.130 15.89 3.30 0.00 2.90
349 350 3.361644 CCGATTGAAACGTTTTGCTCATG 59.638 43.478 15.89 2.73 0.00 3.07
350 351 3.974401 CGATTGAAACGTTTTGCTCATGT 59.026 39.130 15.89 0.83 0.00 3.21
351 352 4.143762 CGATTGAAACGTTTTGCTCATGTG 60.144 41.667 15.89 0.00 0.00 3.21
352 353 3.773860 TGAAACGTTTTGCTCATGTGT 57.226 38.095 15.89 0.00 0.00 3.72
353 354 4.884458 TGAAACGTTTTGCTCATGTGTA 57.116 36.364 15.89 0.00 0.00 2.90
354 355 5.431420 TGAAACGTTTTGCTCATGTGTAT 57.569 34.783 15.89 0.00 0.00 2.29
355 356 5.211454 TGAAACGTTTTGCTCATGTGTATG 58.789 37.500 15.89 0.00 35.57 2.39
356 357 3.201726 ACGTTTTGCTCATGTGTATGC 57.798 42.857 0.00 0.00 34.21 3.14
357 358 2.168384 CGTTTTGCTCATGTGTATGCG 58.832 47.619 0.00 0.00 34.21 4.73
358 359 2.518949 GTTTTGCTCATGTGTATGCGG 58.481 47.619 0.00 0.00 34.21 5.69
359 360 1.819928 TTTGCTCATGTGTATGCGGT 58.180 45.000 0.00 0.00 34.21 5.68
360 361 1.085893 TTGCTCATGTGTATGCGGTG 58.914 50.000 0.00 0.00 34.21 4.94
361 362 0.248843 TGCTCATGTGTATGCGGTGA 59.751 50.000 0.00 0.00 34.21 4.02
362 363 0.933097 GCTCATGTGTATGCGGTGAG 59.067 55.000 0.00 5.82 39.35 3.51
363 364 1.740380 GCTCATGTGTATGCGGTGAGT 60.740 52.381 10.10 0.00 38.75 3.41
364 365 1.929169 CTCATGTGTATGCGGTGAGTG 59.071 52.381 0.00 0.00 34.21 3.51
365 366 1.275010 TCATGTGTATGCGGTGAGTGT 59.725 47.619 0.00 0.00 34.21 3.55
366 367 2.076100 CATGTGTATGCGGTGAGTGTT 58.924 47.619 0.00 0.00 0.00 3.32
367 368 3.056465 TCATGTGTATGCGGTGAGTGTTA 60.056 43.478 0.00 0.00 34.21 2.41
368 369 2.954316 TGTGTATGCGGTGAGTGTTAG 58.046 47.619 0.00 0.00 0.00 2.34
369 370 1.659098 GTGTATGCGGTGAGTGTTAGC 59.341 52.381 0.00 0.00 0.00 3.09
370 371 1.273886 TGTATGCGGTGAGTGTTAGCA 59.726 47.619 0.00 0.00 42.28 3.49
371 372 2.289133 TGTATGCGGTGAGTGTTAGCAA 60.289 45.455 0.00 0.00 41.37 3.91
372 373 2.113860 ATGCGGTGAGTGTTAGCAAT 57.886 45.000 0.00 0.00 41.37 3.56
373 374 1.438651 TGCGGTGAGTGTTAGCAATC 58.561 50.000 0.00 0.00 39.85 2.67
374 375 1.270571 TGCGGTGAGTGTTAGCAATCA 60.271 47.619 5.57 5.57 45.83 2.57
382 383 6.968131 TGAGTGTTAGCAATCATACAAGAC 57.032 37.500 5.57 0.00 43.60 3.01
383 384 6.701340 TGAGTGTTAGCAATCATACAAGACT 58.299 36.000 5.57 0.00 43.60 3.24
384 385 7.836842 TGAGTGTTAGCAATCATACAAGACTA 58.163 34.615 5.57 0.00 43.60 2.59
385 386 8.478066 TGAGTGTTAGCAATCATACAAGACTAT 58.522 33.333 5.57 0.00 43.60 2.12
386 387 9.967346 GAGTGTTAGCAATCATACAAGACTATA 57.033 33.333 1.91 0.00 39.29 1.31
393 394 8.600668 AGCAATCATACAAGACTATATGATGGT 58.399 33.333 17.07 14.30 44.22 3.55
394 395 9.224267 GCAATCATACAAGACTATATGATGGTT 57.776 33.333 17.07 5.91 44.22 3.67
398 399 9.147732 TCATACAAGACTATATGATGGTTGAGT 57.852 33.333 5.59 0.00 33.78 3.41
402 403 8.928448 ACAAGACTATATGATGGTTGAGTATGT 58.072 33.333 0.00 0.00 0.00 2.29
403 404 9.201127 CAAGACTATATGATGGTTGAGTATGTG 57.799 37.037 0.00 0.00 0.00 3.21
404 405 7.901029 AGACTATATGATGGTTGAGTATGTGG 58.099 38.462 0.00 0.00 0.00 4.17
405 406 7.730332 AGACTATATGATGGTTGAGTATGTGGA 59.270 37.037 0.00 0.00 0.00 4.02
406 407 7.671302 ACTATATGATGGTTGAGTATGTGGAC 58.329 38.462 0.00 0.00 0.00 4.02
407 408 6.753913 ATATGATGGTTGAGTATGTGGACT 57.246 37.500 0.00 0.00 0.00 3.85
408 409 4.908601 TGATGGTTGAGTATGTGGACTT 57.091 40.909 0.00 0.00 0.00 3.01
409 410 4.578871 TGATGGTTGAGTATGTGGACTTG 58.421 43.478 0.00 0.00 0.00 3.16
410 411 2.778299 TGGTTGAGTATGTGGACTTGC 58.222 47.619 0.00 0.00 0.00 4.01
411 412 2.084546 GGTTGAGTATGTGGACTTGCC 58.915 52.381 0.00 0.00 37.10 4.52
412 413 2.290323 GGTTGAGTATGTGGACTTGCCT 60.290 50.000 0.00 0.00 37.63 4.75
413 414 3.055385 GGTTGAGTATGTGGACTTGCCTA 60.055 47.826 0.00 0.00 37.63 3.93
414 415 4.564821 GGTTGAGTATGTGGACTTGCCTAA 60.565 45.833 0.00 0.00 37.63 2.69
415 416 4.901197 TGAGTATGTGGACTTGCCTAAA 57.099 40.909 0.00 0.00 37.63 1.85
416 417 4.575885 TGAGTATGTGGACTTGCCTAAAC 58.424 43.478 0.00 0.00 37.63 2.01
417 418 3.596214 AGTATGTGGACTTGCCTAAACG 58.404 45.455 0.00 0.00 37.63 3.60
418 419 1.165270 ATGTGGACTTGCCTAAACGC 58.835 50.000 0.00 0.00 37.63 4.84
419 420 0.107831 TGTGGACTTGCCTAAACGCT 59.892 50.000 0.00 0.00 37.63 5.07
420 421 0.796927 GTGGACTTGCCTAAACGCTC 59.203 55.000 0.00 0.00 37.63 5.03
421 422 0.321298 TGGACTTGCCTAAACGCTCC 60.321 55.000 0.00 0.00 37.63 4.70
422 423 1.359459 GGACTTGCCTAAACGCTCCG 61.359 60.000 0.00 0.00 0.00 4.63
423 424 0.389426 GACTTGCCTAAACGCTCCGA 60.389 55.000 0.00 0.00 0.00 4.55
424 425 0.249398 ACTTGCCTAAACGCTCCGAT 59.751 50.000 0.00 0.00 0.00 4.18
425 426 1.479323 ACTTGCCTAAACGCTCCGATA 59.521 47.619 0.00 0.00 0.00 2.92
426 427 1.859080 CTTGCCTAAACGCTCCGATAC 59.141 52.381 0.00 0.00 0.00 2.24
427 428 0.248743 TGCCTAAACGCTCCGATACG 60.249 55.000 0.00 0.00 0.00 3.06
428 429 0.248784 GCCTAAACGCTCCGATACGT 60.249 55.000 0.00 0.00 46.07 3.57
429 430 1.474017 CCTAAACGCTCCGATACGTG 58.526 55.000 0.00 0.00 42.68 4.49
430 431 1.064505 CCTAAACGCTCCGATACGTGA 59.935 52.381 0.00 0.00 42.68 4.35
431 432 2.107178 CTAAACGCTCCGATACGTGAC 58.893 52.381 0.00 0.00 42.68 3.67
432 433 0.457337 AAACGCTCCGATACGTGACC 60.457 55.000 0.00 0.00 42.68 4.02
433 434 2.025727 CGCTCCGATACGTGACCC 59.974 66.667 0.00 0.00 0.00 4.46
434 435 2.478890 CGCTCCGATACGTGACCCT 61.479 63.158 0.00 0.00 0.00 4.34
435 436 1.814527 GCTCCGATACGTGACCCTT 59.185 57.895 0.00 0.00 0.00 3.95
436 437 0.248949 GCTCCGATACGTGACCCTTC 60.249 60.000 0.00 0.00 0.00 3.46
437 438 0.384669 CTCCGATACGTGACCCTTCC 59.615 60.000 0.00 0.00 0.00 3.46
438 439 0.033796 TCCGATACGTGACCCTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
439 440 0.102481 CCGATACGTGACCCTTCCTG 59.898 60.000 0.00 0.00 0.00 3.86
440 441 1.100510 CGATACGTGACCCTTCCTGA 58.899 55.000 0.00 0.00 0.00 3.86
441 442 1.475280 CGATACGTGACCCTTCCTGAA 59.525 52.381 0.00 0.00 0.00 3.02
442 443 2.094390 CGATACGTGACCCTTCCTGAAA 60.094 50.000 0.00 0.00 0.00 2.69
443 444 3.615592 CGATACGTGACCCTTCCTGAAAA 60.616 47.826 0.00 0.00 0.00 2.29
444 445 2.256117 ACGTGACCCTTCCTGAAAAG 57.744 50.000 0.00 0.00 0.00 2.27
445 446 1.766496 ACGTGACCCTTCCTGAAAAGA 59.234 47.619 0.00 0.00 0.00 2.52
446 447 2.372172 ACGTGACCCTTCCTGAAAAGAT 59.628 45.455 0.00 0.00 0.00 2.40
447 448 2.744202 CGTGACCCTTCCTGAAAAGATG 59.256 50.000 0.00 0.00 0.00 2.90
448 449 3.557054 CGTGACCCTTCCTGAAAAGATGA 60.557 47.826 0.00 0.00 0.00 2.92
449 450 4.593956 GTGACCCTTCCTGAAAAGATGAT 58.406 43.478 0.00 0.00 0.00 2.45
450 451 4.397417 GTGACCCTTCCTGAAAAGATGATG 59.603 45.833 0.00 0.00 0.00 3.07
451 452 4.289410 TGACCCTTCCTGAAAAGATGATGA 59.711 41.667 0.00 0.00 0.00 2.92
452 453 5.222109 TGACCCTTCCTGAAAAGATGATGAA 60.222 40.000 0.00 0.00 0.00 2.57
453 454 5.835582 ACCCTTCCTGAAAAGATGATGAAT 58.164 37.500 0.00 0.00 0.00 2.57
454 455 6.259123 ACCCTTCCTGAAAAGATGATGAATT 58.741 36.000 0.00 0.00 0.00 2.17
455 456 6.154021 ACCCTTCCTGAAAAGATGATGAATTG 59.846 38.462 0.00 0.00 0.00 2.32
456 457 6.154021 CCCTTCCTGAAAAGATGATGAATTGT 59.846 38.462 0.00 0.00 0.00 2.71
457 458 7.340232 CCCTTCCTGAAAAGATGATGAATTGTA 59.660 37.037 0.00 0.00 0.00 2.41
458 459 8.404000 CCTTCCTGAAAAGATGATGAATTGTAG 58.596 37.037 0.00 0.00 0.00 2.74
459 460 8.868522 TTCCTGAAAAGATGATGAATTGTAGT 57.131 30.769 0.00 0.00 0.00 2.73
460 461 8.868522 TCCTGAAAAGATGATGAATTGTAGTT 57.131 30.769 0.00 0.00 0.00 2.24
461 462 8.733458 TCCTGAAAAGATGATGAATTGTAGTTG 58.267 33.333 0.00 0.00 0.00 3.16
462 463 7.487189 CCTGAAAAGATGATGAATTGTAGTTGC 59.513 37.037 0.00 0.00 0.00 4.17
463 464 7.884257 TGAAAAGATGATGAATTGTAGTTGCA 58.116 30.769 0.00 0.00 0.00 4.08
464 465 8.358895 TGAAAAGATGATGAATTGTAGTTGCAA 58.641 29.630 0.00 0.00 0.00 4.08
465 466 9.195411 GAAAAGATGATGAATTGTAGTTGCAAA 57.805 29.630 0.00 0.00 31.63 3.68
466 467 8.752766 AAAGATGATGAATTGTAGTTGCAAAG 57.247 30.769 0.00 0.00 31.63 2.77
467 468 7.458409 AGATGATGAATTGTAGTTGCAAAGT 57.542 32.000 0.00 0.00 31.63 2.66
468 469 7.889469 AGATGATGAATTGTAGTTGCAAAGTT 58.111 30.769 0.00 0.00 31.63 2.66
469 470 7.811236 AGATGATGAATTGTAGTTGCAAAGTTG 59.189 33.333 0.00 0.00 31.63 3.16
470 471 7.036996 TGATGAATTGTAGTTGCAAAGTTGA 57.963 32.000 0.00 0.00 31.63 3.18
471 472 6.917477 TGATGAATTGTAGTTGCAAAGTTGAC 59.083 34.615 0.00 0.00 31.63 3.18
472 473 6.449635 TGAATTGTAGTTGCAAAGTTGACT 57.550 33.333 0.00 0.00 31.63 3.41
473 474 6.264832 TGAATTGTAGTTGCAAAGTTGACTG 58.735 36.000 0.00 0.00 31.63 3.51
474 475 6.094742 TGAATTGTAGTTGCAAAGTTGACTGA 59.905 34.615 0.00 0.00 31.63 3.41
475 476 5.888691 TTGTAGTTGCAAAGTTGACTGAA 57.111 34.783 0.00 0.00 0.00 3.02
476 477 5.229921 TGTAGTTGCAAAGTTGACTGAAC 57.770 39.130 0.00 0.00 34.40 3.18
477 478 4.697828 TGTAGTTGCAAAGTTGACTGAACA 59.302 37.500 0.00 0.00 36.98 3.18
478 479 4.989279 AGTTGCAAAGTTGACTGAACAT 57.011 36.364 0.00 0.00 36.98 2.71
479 480 6.540551 TGTAGTTGCAAAGTTGACTGAACATA 59.459 34.615 0.00 0.00 36.98 2.29
480 481 6.064846 AGTTGCAAAGTTGACTGAACATAG 57.935 37.500 0.00 0.00 36.98 2.23
481 482 5.590259 AGTTGCAAAGTTGACTGAACATAGT 59.410 36.000 0.00 0.00 36.98 2.12
482 483 6.095440 AGTTGCAAAGTTGACTGAACATAGTT 59.905 34.615 0.00 0.00 36.98 2.24
483 484 6.449635 TGCAAAGTTGACTGAACATAGTTT 57.550 33.333 0.00 0.00 36.98 2.66
484 485 6.264832 TGCAAAGTTGACTGAACATAGTTTG 58.735 36.000 0.00 0.00 36.98 2.93
485 486 6.127758 TGCAAAGTTGACTGAACATAGTTTGT 60.128 34.615 0.00 0.00 41.53 2.83
499 500 8.472007 AACATAGTTTGTTGGTTTCCAATAGA 57.528 30.769 4.51 0.00 46.80 1.98
500 501 8.110860 ACATAGTTTGTTGGTTTCCAATAGAG 57.889 34.615 4.51 0.00 45.80 2.43
501 502 7.724061 ACATAGTTTGTTGGTTTCCAATAGAGT 59.276 33.333 4.51 3.55 45.80 3.24
502 503 8.576442 CATAGTTTGTTGGTTTCCAATAGAGTT 58.424 33.333 4.51 0.00 45.80 3.01
503 504 7.418337 AGTTTGTTGGTTTCCAATAGAGTTT 57.582 32.000 4.51 0.00 45.80 2.66
504 505 7.847096 AGTTTGTTGGTTTCCAATAGAGTTTT 58.153 30.769 4.51 0.00 45.80 2.43
505 506 8.318412 AGTTTGTTGGTTTCCAATAGAGTTTTT 58.682 29.630 4.51 0.00 45.80 1.94
506 507 9.589111 GTTTGTTGGTTTCCAATAGAGTTTTTA 57.411 29.630 4.51 0.00 45.80 1.52
507 508 9.589111 TTTGTTGGTTTCCAATAGAGTTTTTAC 57.411 29.630 4.51 0.00 45.80 2.01
508 509 7.718525 TGTTGGTTTCCAATAGAGTTTTTACC 58.281 34.615 4.51 0.00 45.80 2.85
509 510 7.562088 TGTTGGTTTCCAATAGAGTTTTTACCT 59.438 33.333 4.51 0.00 45.80 3.08
510 511 8.418662 GTTGGTTTCCAATAGAGTTTTTACCTT 58.581 33.333 4.51 0.00 45.80 3.50
511 512 9.643735 TTGGTTTCCAATAGAGTTTTTACCTTA 57.356 29.630 0.00 0.00 38.75 2.69
512 513 9.816787 TGGTTTCCAATAGAGTTTTTACCTTAT 57.183 29.630 0.00 0.00 0.00 1.73
530 531 9.952030 TTACCTTATACTTCAATGTTGTGATGA 57.048 29.630 0.00 0.00 0.00 2.92
531 532 8.862325 ACCTTATACTTCAATGTTGTGATGAA 57.138 30.769 0.00 0.00 0.00 2.57
532 533 9.466497 ACCTTATACTTCAATGTTGTGATGAAT 57.534 29.630 0.00 0.00 33.03 2.57
535 536 9.571810 TTATACTTCAATGTTGTGATGAATTGC 57.428 29.630 0.00 0.00 33.03 3.56
536 537 6.092955 ACTTCAATGTTGTGATGAATTGCT 57.907 33.333 0.00 0.00 33.03 3.91
537 538 7.218228 ACTTCAATGTTGTGATGAATTGCTA 57.782 32.000 0.00 0.00 33.03 3.49
538 539 7.086376 ACTTCAATGTTGTGATGAATTGCTAC 58.914 34.615 0.00 0.00 33.03 3.58
539 540 6.822667 TCAATGTTGTGATGAATTGCTACT 57.177 33.333 0.00 0.00 31.50 2.57
540 541 7.218228 TCAATGTTGTGATGAATTGCTACTT 57.782 32.000 0.00 0.00 31.50 2.24
541 542 8.334263 TCAATGTTGTGATGAATTGCTACTTA 57.666 30.769 0.00 0.00 31.50 2.24
542 543 8.959548 TCAATGTTGTGATGAATTGCTACTTAT 58.040 29.630 0.00 0.00 31.50 1.73
543 544 9.577110 CAATGTTGTGATGAATTGCTACTTATT 57.423 29.630 0.00 0.00 0.00 1.40
544 545 9.793252 AATGTTGTGATGAATTGCTACTTATTC 57.207 29.630 0.00 0.00 0.00 1.75
545 546 8.334263 TGTTGTGATGAATTGCTACTTATTCA 57.666 30.769 0.00 0.00 42.90 2.57
547 548 9.229784 GTTGTGATGAATTGCTACTTATTCATG 57.770 33.333 13.30 0.00 46.23 3.07
548 549 8.735692 TGTGATGAATTGCTACTTATTCATGA 57.264 30.769 13.30 4.41 46.23 3.07
549 550 8.615211 TGTGATGAATTGCTACTTATTCATGAC 58.385 33.333 15.65 15.65 46.23 3.06
550 551 8.615211 GTGATGAATTGCTACTTATTCATGACA 58.385 33.333 16.85 8.08 45.97 3.58
551 552 9.176460 TGATGAATTGCTACTTATTCATGACAA 57.824 29.630 13.30 0.00 46.23 3.18
552 553 9.661187 GATGAATTGCTACTTATTCATGACAAG 57.339 33.333 13.30 12.62 46.23 3.16
553 554 8.565896 TGAATTGCTACTTATTCATGACAAGT 57.434 30.769 20.22 20.22 36.22 3.16
554 555 8.668353 TGAATTGCTACTTATTCATGACAAGTC 58.332 33.333 20.04 15.01 36.22 3.01
555 556 8.798859 AATTGCTACTTATTCATGACAAGTCT 57.201 30.769 20.04 5.34 34.48 3.24
556 557 9.890629 AATTGCTACTTATTCATGACAAGTCTA 57.109 29.630 20.04 7.90 34.48 2.59
558 559 8.877808 TGCTACTTATTCATGACAAGTCTATG 57.122 34.615 20.04 12.54 34.48 2.23
559 560 8.695456 TGCTACTTATTCATGACAAGTCTATGA 58.305 33.333 20.04 6.52 34.48 2.15
560 561 9.703892 GCTACTTATTCATGACAAGTCTATGAT 57.296 33.333 20.04 0.78 34.48 2.45
673 674 0.250597 GTTTTGCCCCTAGTCCGTGT 60.251 55.000 0.00 0.00 0.00 4.49
895 914 1.579932 GCTGACCACGACGAGAGAA 59.420 57.895 0.00 0.00 0.00 2.87
901 920 0.727970 CCACGACGAGAGAACGAGAT 59.272 55.000 0.00 0.00 37.84 2.75
966 985 1.264749 ATCTAGTTGTGGAGGGCGCA 61.265 55.000 10.83 0.00 0.00 6.09
981 1000 3.422303 GCAGCGGCGTTGACATCA 61.422 61.111 27.88 0.00 0.00 3.07
1119 1138 0.472471 GGAGGGTTTCTCACACACCA 59.528 55.000 0.00 0.00 44.19 4.17
1428 1447 4.397417 GCTGTTGAGCTTAGGATGTTGAAT 59.603 41.667 0.00 0.00 42.52 2.57
1431 1456 7.201767 GCTGTTGAGCTTAGGATGTTGAATAAT 60.202 37.037 0.00 0.00 42.52 1.28
1475 1500 5.329399 TCAAGCACTACCAATACCCATTTT 58.671 37.500 0.00 0.00 0.00 1.82
1874 1909 2.165167 CCTAGTTGTGTCCCACTCGTA 58.835 52.381 0.00 0.00 35.11 3.43
1898 1933 7.634526 ATGTTTTACCCCTAATTCCCAAAAA 57.365 32.000 0.00 0.00 0.00 1.94
1903 1938 5.023514 ACCCCTAATTCCCAAAAATCACT 57.976 39.130 0.00 0.00 0.00 3.41
1911 1946 2.627699 TCCCAAAAATCACTGGTTCTGC 59.372 45.455 0.00 0.00 0.00 4.26
2063 2098 5.819379 CACCTATATGTCAGTGTCATTTGCT 59.181 40.000 8.17 0.00 0.00 3.91
2104 2139 5.769662 TGGAAAGTGCACATCTGAGTTTTAT 59.230 36.000 21.04 0.00 0.00 1.40
2105 2140 6.939730 TGGAAAGTGCACATCTGAGTTTTATA 59.060 34.615 21.04 0.00 0.00 0.98
2175 2212 1.686355 TGGTGGCAAAGAACGACAAT 58.314 45.000 0.00 0.00 0.00 2.71
2226 2263 2.875933 GGAACAACATTCGTGGAAGTCA 59.124 45.455 0.00 0.00 0.00 3.41
2229 2266 3.476552 ACAACATTCGTGGAAGTCATGT 58.523 40.909 0.00 0.00 34.14 3.21
2230 2267 4.637276 ACAACATTCGTGGAAGTCATGTA 58.363 39.130 0.00 0.00 34.14 2.29
2231 2268 5.060506 ACAACATTCGTGGAAGTCATGTAA 58.939 37.500 0.00 0.00 34.14 2.41
2232 2269 5.529430 ACAACATTCGTGGAAGTCATGTAAA 59.471 36.000 0.00 0.00 34.14 2.01
2423 2468 1.212935 AGCTAAAACTCGGATGGGCAT 59.787 47.619 0.00 0.00 0.00 4.40
2474 2521 9.546428 CAAATGACACTAACATATAGGTGATGA 57.454 33.333 0.00 0.00 34.28 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.606604 TGTACGAGTTCAGGCCCTTC 59.393 55.000 0.00 0.00 0.00 3.46
3 4 0.179081 GGATGTACGAGTTCAGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
4 5 0.824759 AGGATGTACGAGTTCAGGCC 59.175 55.000 0.00 0.00 0.00 5.19
5 6 2.673368 CAAAGGATGTACGAGTTCAGGC 59.327 50.000 0.00 0.00 0.00 4.85
6 7 3.679980 CACAAAGGATGTACGAGTTCAGG 59.320 47.826 0.00 0.00 41.46 3.86
7 8 3.123621 GCACAAAGGATGTACGAGTTCAG 59.876 47.826 0.00 0.00 41.46 3.02
9 10 3.326747 AGCACAAAGGATGTACGAGTTC 58.673 45.455 0.00 0.00 41.46 3.01
11 12 3.402628 AAGCACAAAGGATGTACGAGT 57.597 42.857 0.00 0.00 41.46 4.18
12 13 4.242475 TGTAAGCACAAAGGATGTACGAG 58.758 43.478 0.00 0.00 41.46 4.18
13 14 4.260139 TGTAAGCACAAAGGATGTACGA 57.740 40.909 0.00 0.00 41.46 3.43
14 15 4.378046 GGTTGTAAGCACAAAGGATGTACG 60.378 45.833 0.00 0.00 45.99 3.67
15 16 4.760204 AGGTTGTAAGCACAAAGGATGTAC 59.240 41.667 0.00 0.00 45.99 2.90
16 17 4.980573 AGGTTGTAAGCACAAAGGATGTA 58.019 39.130 0.00 0.00 45.99 2.29
17 18 3.821033 GAGGTTGTAAGCACAAAGGATGT 59.179 43.478 0.00 0.00 45.99 3.06
18 19 4.074970 AGAGGTTGTAAGCACAAAGGATG 58.925 43.478 0.00 0.00 45.99 3.51
19 20 4.327680 GAGAGGTTGTAAGCACAAAGGAT 58.672 43.478 0.00 0.00 45.99 3.24
20 21 3.496160 GGAGAGGTTGTAAGCACAAAGGA 60.496 47.826 0.00 0.00 45.99 3.36
21 22 2.814336 GGAGAGGTTGTAAGCACAAAGG 59.186 50.000 0.00 0.00 45.99 3.11
22 23 3.476552 TGGAGAGGTTGTAAGCACAAAG 58.523 45.455 0.00 0.00 45.99 2.77
23 24 3.569194 TGGAGAGGTTGTAAGCACAAA 57.431 42.857 0.00 0.00 45.99 2.83
24 25 3.788227 ATGGAGAGGTTGTAAGCACAA 57.212 42.857 0.00 0.00 42.39 3.33
25 26 3.369471 GCTATGGAGAGGTTGTAAGCACA 60.369 47.826 0.00 0.00 0.00 4.57
26 27 3.118592 AGCTATGGAGAGGTTGTAAGCAC 60.119 47.826 0.00 0.00 0.00 4.40
27 28 3.107601 AGCTATGGAGAGGTTGTAAGCA 58.892 45.455 0.00 0.00 0.00 3.91
28 29 3.828875 AGCTATGGAGAGGTTGTAAGC 57.171 47.619 0.00 0.00 0.00 3.09
29 30 5.010213 GTCCTAGCTATGGAGAGGTTGTAAG 59.990 48.000 10.98 0.00 33.78 2.34
30 31 4.894114 GTCCTAGCTATGGAGAGGTTGTAA 59.106 45.833 10.98 0.00 33.78 2.41
31 32 4.471548 GTCCTAGCTATGGAGAGGTTGTA 58.528 47.826 10.98 0.00 33.78 2.41
32 33 3.301274 GTCCTAGCTATGGAGAGGTTGT 58.699 50.000 10.98 0.00 33.78 3.32
33 34 2.630580 GGTCCTAGCTATGGAGAGGTTG 59.369 54.545 10.98 0.00 33.78 3.77
34 35 2.520549 AGGTCCTAGCTATGGAGAGGTT 59.479 50.000 10.98 0.00 33.78 3.50
35 36 2.148702 AGGTCCTAGCTATGGAGAGGT 58.851 52.381 10.98 0.00 33.78 3.85
36 37 2.896685 CAAGGTCCTAGCTATGGAGAGG 59.103 54.545 10.98 2.28 33.78 3.69
37 38 2.298729 GCAAGGTCCTAGCTATGGAGAG 59.701 54.545 10.98 4.83 33.78 3.20
38 39 2.320781 GCAAGGTCCTAGCTATGGAGA 58.679 52.381 10.98 0.00 33.78 3.71
39 40 1.346068 GGCAAGGTCCTAGCTATGGAG 59.654 57.143 10.98 3.25 33.78 3.86
40 41 1.062121 AGGCAAGGTCCTAGCTATGGA 60.062 52.381 7.59 7.59 33.95 3.41
41 42 1.346068 GAGGCAAGGTCCTAGCTATGG 59.654 57.143 0.00 0.00 36.38 2.74
42 43 2.298729 GAGAGGCAAGGTCCTAGCTATG 59.701 54.545 0.00 0.00 36.38 2.23
43 44 2.604139 GAGAGGCAAGGTCCTAGCTAT 58.396 52.381 0.00 0.00 36.38 2.97
44 45 1.411787 GGAGAGGCAAGGTCCTAGCTA 60.412 57.143 0.00 0.00 36.38 3.32
45 46 0.689412 GGAGAGGCAAGGTCCTAGCT 60.689 60.000 0.00 0.00 36.38 3.32
46 47 0.978146 TGGAGAGGCAAGGTCCTAGC 60.978 60.000 0.00 0.00 36.38 3.42
47 48 1.799933 ATGGAGAGGCAAGGTCCTAG 58.200 55.000 0.00 0.00 36.38 3.02
48 49 2.679082 GTATGGAGAGGCAAGGTCCTA 58.321 52.381 0.00 0.00 36.38 2.94
49 50 1.501582 GTATGGAGAGGCAAGGTCCT 58.498 55.000 0.00 0.00 39.67 3.85
50 51 0.470341 GGTATGGAGAGGCAAGGTCC 59.530 60.000 0.00 0.00 0.00 4.46
51 52 1.501582 AGGTATGGAGAGGCAAGGTC 58.498 55.000 0.00 0.00 0.00 3.85
52 53 2.399580 GTAGGTATGGAGAGGCAAGGT 58.600 52.381 0.00 0.00 0.00 3.50
53 54 1.694696 GGTAGGTATGGAGAGGCAAGG 59.305 57.143 0.00 0.00 0.00 3.61
54 55 1.694696 GGGTAGGTATGGAGAGGCAAG 59.305 57.143 0.00 0.00 0.00 4.01
55 56 1.694693 GGGGTAGGTATGGAGAGGCAA 60.695 57.143 0.00 0.00 0.00 4.52
56 57 0.105142 GGGGTAGGTATGGAGAGGCA 60.105 60.000 0.00 0.00 0.00 4.75
57 58 0.836830 GGGGGTAGGTATGGAGAGGC 60.837 65.000 0.00 0.00 0.00 4.70
58 59 3.477783 GGGGGTAGGTATGGAGAGG 57.522 63.158 0.00 0.00 0.00 3.69
73 74 1.617947 GCCTGACAGTAGAGTGGGGG 61.618 65.000 0.93 0.00 0.00 5.40
74 75 0.616111 AGCCTGACAGTAGAGTGGGG 60.616 60.000 0.93 0.00 0.00 4.96
75 76 1.270907 AAGCCTGACAGTAGAGTGGG 58.729 55.000 0.93 0.00 0.00 4.61
76 77 3.357203 TCTAAGCCTGACAGTAGAGTGG 58.643 50.000 0.93 0.00 0.00 4.00
77 78 4.381079 GGTTCTAAGCCTGACAGTAGAGTG 60.381 50.000 0.93 0.00 0.00 3.51
78 79 3.764972 GGTTCTAAGCCTGACAGTAGAGT 59.235 47.826 0.93 0.00 0.00 3.24
79 80 3.764434 TGGTTCTAAGCCTGACAGTAGAG 59.236 47.826 0.93 0.00 0.00 2.43
80 81 3.510360 GTGGTTCTAAGCCTGACAGTAGA 59.490 47.826 0.93 0.00 0.00 2.59
81 82 3.673594 CGTGGTTCTAAGCCTGACAGTAG 60.674 52.174 0.93 0.00 0.00 2.57
82 83 2.230508 CGTGGTTCTAAGCCTGACAGTA 59.769 50.000 0.93 0.00 0.00 2.74
83 84 1.000955 CGTGGTTCTAAGCCTGACAGT 59.999 52.381 0.93 0.00 0.00 3.55
84 85 1.272490 TCGTGGTTCTAAGCCTGACAG 59.728 52.381 0.00 0.00 0.00 3.51
85 86 1.000506 GTCGTGGTTCTAAGCCTGACA 59.999 52.381 8.06 0.00 34.53 3.58
86 87 1.000506 TGTCGTGGTTCTAAGCCTGAC 59.999 52.381 6.65 6.65 34.77 3.51
87 88 1.272490 CTGTCGTGGTTCTAAGCCTGA 59.728 52.381 0.00 0.00 0.00 3.86
88 89 1.673033 CCTGTCGTGGTTCTAAGCCTG 60.673 57.143 0.00 0.00 0.00 4.85
89 90 0.608640 CCTGTCGTGGTTCTAAGCCT 59.391 55.000 0.00 0.00 0.00 4.58
90 91 0.391263 CCCTGTCGTGGTTCTAAGCC 60.391 60.000 0.00 0.00 0.00 4.35
91 92 1.019805 GCCCTGTCGTGGTTCTAAGC 61.020 60.000 0.00 0.00 0.00 3.09
92 93 0.391263 GGCCCTGTCGTGGTTCTAAG 60.391 60.000 0.00 0.00 0.00 2.18
93 94 0.834687 AGGCCCTGTCGTGGTTCTAA 60.835 55.000 0.00 0.00 0.00 2.10
94 95 0.040058 TAGGCCCTGTCGTGGTTCTA 59.960 55.000 0.00 0.00 0.00 2.10
95 96 0.617820 ATAGGCCCTGTCGTGGTTCT 60.618 55.000 0.00 0.00 0.00 3.01
96 97 0.179081 GATAGGCCCTGTCGTGGTTC 60.179 60.000 0.00 0.00 0.00 3.62
97 98 0.617820 AGATAGGCCCTGTCGTGGTT 60.618 55.000 0.00 0.00 0.00 3.67
98 99 0.617820 AAGATAGGCCCTGTCGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
99 100 0.541863 AAAGATAGGCCCTGTCGTGG 59.458 55.000 0.00 0.00 0.00 4.94
100 101 2.403252 AAAAGATAGGCCCTGTCGTG 57.597 50.000 0.00 0.00 0.00 4.35
101 102 3.105283 AGTAAAAGATAGGCCCTGTCGT 58.895 45.455 0.00 0.00 0.00 4.34
102 103 3.821421 AGTAAAAGATAGGCCCTGTCG 57.179 47.619 0.00 0.00 0.00 4.35
103 104 7.556635 ACATAAAAGTAAAAGATAGGCCCTGTC 59.443 37.037 0.00 0.00 0.00 3.51
104 105 7.410991 ACATAAAAGTAAAAGATAGGCCCTGT 58.589 34.615 0.00 0.00 0.00 4.00
105 106 7.881775 ACATAAAAGTAAAAGATAGGCCCTG 57.118 36.000 0.00 0.00 0.00 4.45
123 124 9.461312 ACTCTTGCATGAAGGTAAATACATAAA 57.539 29.630 0.00 0.00 31.85 1.40
124 125 9.461312 AACTCTTGCATGAAGGTAAATACATAA 57.539 29.630 0.00 0.00 31.85 1.90
126 127 7.944729 AACTCTTGCATGAAGGTAAATACAT 57.055 32.000 0.00 0.00 31.85 2.29
127 128 8.856153 TTAACTCTTGCATGAAGGTAAATACA 57.144 30.769 0.00 0.00 31.85 2.29
128 129 9.774742 CTTTAACTCTTGCATGAAGGTAAATAC 57.225 33.333 15.75 0.00 31.85 1.89
129 130 9.515226 ACTTTAACTCTTGCATGAAGGTAAATA 57.485 29.630 15.75 3.81 31.85 1.40
130 131 8.409358 ACTTTAACTCTTGCATGAAGGTAAAT 57.591 30.769 15.75 8.79 31.85 1.40
131 132 7.817418 ACTTTAACTCTTGCATGAAGGTAAA 57.183 32.000 15.12 15.12 31.85 2.01
132 133 7.719633 AGAACTTTAACTCTTGCATGAAGGTAA 59.280 33.333 0.00 4.99 31.85 2.85
133 134 7.224297 AGAACTTTAACTCTTGCATGAAGGTA 58.776 34.615 0.00 0.00 31.85 3.08
134 135 6.064717 AGAACTTTAACTCTTGCATGAAGGT 58.935 36.000 0.00 0.00 31.85 3.50
135 136 6.566197 AGAACTTTAACTCTTGCATGAAGG 57.434 37.500 0.00 0.00 31.85 3.46
136 137 7.869800 AGAAGAACTTTAACTCTTGCATGAAG 58.130 34.615 0.00 0.75 32.01 3.02
137 138 7.807977 AGAAGAACTTTAACTCTTGCATGAA 57.192 32.000 0.00 0.00 32.01 2.57
138 139 9.155975 GATAGAAGAACTTTAACTCTTGCATGA 57.844 33.333 0.00 1.92 32.01 3.07
139 140 9.160496 AGATAGAAGAACTTTAACTCTTGCATG 57.840 33.333 0.00 0.00 32.01 4.06
166 167 9.625747 TTGCCAAAAGAGAAAATAAAAAGGAAT 57.374 25.926 0.00 0.00 0.00 3.01
167 168 9.108284 CTTGCCAAAAGAGAAAATAAAAAGGAA 57.892 29.630 0.00 0.00 0.00 3.36
168 169 7.226523 GCTTGCCAAAAGAGAAAATAAAAAGGA 59.773 33.333 0.00 0.00 0.00 3.36
169 170 7.012232 TGCTTGCCAAAAGAGAAAATAAAAAGG 59.988 33.333 0.00 0.00 0.00 3.11
170 171 7.918643 TGCTTGCCAAAAGAGAAAATAAAAAG 58.081 30.769 0.00 0.00 0.00 2.27
171 172 7.856145 TGCTTGCCAAAAGAGAAAATAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
172 173 7.714377 TGATGCTTGCCAAAAGAGAAAATAAAA 59.286 29.630 0.00 0.00 0.00 1.52
173 174 7.215789 TGATGCTTGCCAAAAGAGAAAATAAA 58.784 30.769 0.00 0.00 0.00 1.40
174 175 6.757237 TGATGCTTGCCAAAAGAGAAAATAA 58.243 32.000 0.00 0.00 0.00 1.40
175 176 6.343716 TGATGCTTGCCAAAAGAGAAAATA 57.656 33.333 0.00 0.00 0.00 1.40
176 177 5.217978 TGATGCTTGCCAAAAGAGAAAAT 57.782 34.783 0.00 0.00 0.00 1.82
177 178 4.669206 TGATGCTTGCCAAAAGAGAAAA 57.331 36.364 0.00 0.00 0.00 2.29
178 179 4.039488 ACATGATGCTTGCCAAAAGAGAAA 59.961 37.500 0.00 0.00 0.00 2.52
179 180 3.575256 ACATGATGCTTGCCAAAAGAGAA 59.425 39.130 0.00 0.00 0.00 2.87
180 181 3.057104 CACATGATGCTTGCCAAAAGAGA 60.057 43.478 0.00 0.00 0.00 3.10
181 182 3.250744 CACATGATGCTTGCCAAAAGAG 58.749 45.455 0.00 0.00 0.00 2.85
182 183 2.028839 CCACATGATGCTTGCCAAAAGA 60.029 45.455 0.00 0.00 0.00 2.52
183 184 2.289195 ACCACATGATGCTTGCCAAAAG 60.289 45.455 0.00 0.00 0.00 2.27
184 185 1.693062 ACCACATGATGCTTGCCAAAA 59.307 42.857 0.00 0.00 0.00 2.44
185 186 1.340088 ACCACATGATGCTTGCCAAA 58.660 45.000 0.00 0.00 0.00 3.28
186 187 2.212812 TACCACATGATGCTTGCCAA 57.787 45.000 0.00 0.00 0.00 4.52
187 188 2.093890 CTTACCACATGATGCTTGCCA 58.906 47.619 0.00 0.00 0.00 4.92
188 189 1.406539 CCTTACCACATGATGCTTGCC 59.593 52.381 0.00 0.00 0.00 4.52
189 190 2.368439 TCCTTACCACATGATGCTTGC 58.632 47.619 0.00 0.00 0.00 4.01
190 191 5.587388 ATTTCCTTACCACATGATGCTTG 57.413 39.130 0.00 0.00 0.00 4.01
191 192 7.293073 AGATATTTCCTTACCACATGATGCTT 58.707 34.615 0.00 0.00 0.00 3.91
192 193 6.845908 AGATATTTCCTTACCACATGATGCT 58.154 36.000 0.00 0.00 0.00 3.79
193 194 7.335422 CCTAGATATTTCCTTACCACATGATGC 59.665 40.741 0.00 0.00 0.00 3.91
194 195 7.335422 GCCTAGATATTTCCTTACCACATGATG 59.665 40.741 0.00 0.00 0.00 3.07
195 196 7.017551 TGCCTAGATATTTCCTTACCACATGAT 59.982 37.037 0.00 0.00 0.00 2.45
196 197 6.328934 TGCCTAGATATTTCCTTACCACATGA 59.671 38.462 0.00 0.00 0.00 3.07
197 198 6.428159 GTGCCTAGATATTTCCTTACCACATG 59.572 42.308 0.00 0.00 0.00 3.21
198 199 6.101150 TGTGCCTAGATATTTCCTTACCACAT 59.899 38.462 0.00 0.00 0.00 3.21
199 200 5.427157 TGTGCCTAGATATTTCCTTACCACA 59.573 40.000 0.00 0.00 0.00 4.17
200 201 5.925509 TGTGCCTAGATATTTCCTTACCAC 58.074 41.667 0.00 0.00 0.00 4.16
201 202 6.763715 ATGTGCCTAGATATTTCCTTACCA 57.236 37.500 0.00 0.00 0.00 3.25
205 206 9.284131 TGGATATATGTGCCTAGATATTTCCTT 57.716 33.333 14.36 0.00 39.39 3.36
206 207 8.860517 TGGATATATGTGCCTAGATATTTCCT 57.139 34.615 14.36 0.00 39.39 3.36
207 208 8.709308 ACTGGATATATGTGCCTAGATATTTCC 58.291 37.037 9.74 9.74 39.25 3.13
209 210 9.896645 CAACTGGATATATGTGCCTAGATATTT 57.103 33.333 0.00 0.00 0.00 1.40
210 211 9.271921 TCAACTGGATATATGTGCCTAGATATT 57.728 33.333 0.00 0.00 0.00 1.28
211 212 8.844865 TCAACTGGATATATGTGCCTAGATAT 57.155 34.615 0.00 0.00 0.00 1.63
212 213 8.664669 TTCAACTGGATATATGTGCCTAGATA 57.335 34.615 0.00 0.00 0.00 1.98
213 214 7.559335 TTCAACTGGATATATGTGCCTAGAT 57.441 36.000 0.00 0.00 0.00 1.98
214 215 6.994421 TTCAACTGGATATATGTGCCTAGA 57.006 37.500 0.00 0.00 0.00 2.43
215 216 9.322773 CATATTCAACTGGATATATGTGCCTAG 57.677 37.037 0.00 0.00 30.60 3.02
216 217 8.267183 CCATATTCAACTGGATATATGTGCCTA 58.733 37.037 0.00 0.00 34.24 3.93
217 218 7.114754 CCATATTCAACTGGATATATGTGCCT 58.885 38.462 0.00 0.00 34.24 4.75
218 219 6.319658 CCCATATTCAACTGGATATATGTGCC 59.680 42.308 0.00 0.00 34.24 5.01
219 220 6.886459 ACCCATATTCAACTGGATATATGTGC 59.114 38.462 0.00 0.00 34.24 4.57
220 221 9.605275 CTACCCATATTCAACTGGATATATGTG 57.395 37.037 0.00 0.00 34.24 3.21
221 222 8.267894 GCTACCCATATTCAACTGGATATATGT 58.732 37.037 0.00 0.00 34.24 2.29
222 223 8.267183 TGCTACCCATATTCAACTGGATATATG 58.733 37.037 0.00 0.00 34.24 1.78
223 224 8.392631 TGCTACCCATATTCAACTGGATATAT 57.607 34.615 0.00 0.00 34.24 0.86
224 225 7.806680 TGCTACCCATATTCAACTGGATATA 57.193 36.000 0.00 0.00 34.24 0.86
225 226 6.702449 TGCTACCCATATTCAACTGGATAT 57.298 37.500 0.00 0.00 34.24 1.63
226 227 6.272090 TCATGCTACCCATATTCAACTGGATA 59.728 38.462 0.00 0.00 34.24 2.59
227 228 5.073554 TCATGCTACCCATATTCAACTGGAT 59.926 40.000 0.00 0.00 34.24 3.41
228 229 4.411869 TCATGCTACCCATATTCAACTGGA 59.588 41.667 0.00 0.00 34.24 3.86
229 230 4.717877 TCATGCTACCCATATTCAACTGG 58.282 43.478 0.00 0.00 31.47 4.00
230 231 5.371526 ACTCATGCTACCCATATTCAACTG 58.628 41.667 0.00 0.00 31.47 3.16
231 232 5.636903 ACTCATGCTACCCATATTCAACT 57.363 39.130 0.00 0.00 31.47 3.16
232 233 7.986085 ATTACTCATGCTACCCATATTCAAC 57.014 36.000 0.00 0.00 31.47 3.18
238 239 9.860650 AAACAATAATTACTCATGCTACCCATA 57.139 29.630 0.00 0.00 31.47 2.74
239 240 8.766994 AAACAATAATTACTCATGCTACCCAT 57.233 30.769 0.00 0.00 33.39 4.00
240 241 9.116067 GTAAACAATAATTACTCATGCTACCCA 57.884 33.333 0.00 0.00 31.92 4.51
241 242 9.116067 TGTAAACAATAATTACTCATGCTACCC 57.884 33.333 0.00 0.00 34.94 3.69
246 247 9.450807 GGTGATGTAAACAATAATTACTCATGC 57.549 33.333 0.00 0.00 34.94 4.06
247 248 9.950680 GGGTGATGTAAACAATAATTACTCATG 57.049 33.333 0.00 0.00 34.94 3.07
248 249 9.920946 AGGGTGATGTAAACAATAATTACTCAT 57.079 29.630 0.00 0.00 34.94 2.90
249 250 9.747898 AAGGGTGATGTAAACAATAATTACTCA 57.252 29.630 0.00 0.00 34.94 3.41
251 252 9.747898 TCAAGGGTGATGTAAACAATAATTACT 57.252 29.630 0.00 0.00 34.94 2.24
253 254 9.184523 CCTCAAGGGTGATGTAAACAATAATTA 57.815 33.333 0.00 0.00 31.85 1.40
254 255 8.066612 CCTCAAGGGTGATGTAAACAATAATT 57.933 34.615 0.00 0.00 31.85 1.40
255 256 7.645058 CCTCAAGGGTGATGTAAACAATAAT 57.355 36.000 0.00 0.00 31.85 1.28
271 272 3.053693 TCCCAACATATTCACCTCAAGGG 60.054 47.826 0.29 0.00 40.27 3.95
272 273 4.202441 CTCCCAACATATTCACCTCAAGG 58.798 47.826 0.00 0.00 42.17 3.61
273 274 4.202441 CCTCCCAACATATTCACCTCAAG 58.798 47.826 0.00 0.00 0.00 3.02
274 275 3.624707 GCCTCCCAACATATTCACCTCAA 60.625 47.826 0.00 0.00 0.00 3.02
275 276 2.092429 GCCTCCCAACATATTCACCTCA 60.092 50.000 0.00 0.00 0.00 3.86
276 277 2.576615 GCCTCCCAACATATTCACCTC 58.423 52.381 0.00 0.00 0.00 3.85
277 278 1.134098 CGCCTCCCAACATATTCACCT 60.134 52.381 0.00 0.00 0.00 4.00
278 279 1.134220 TCGCCTCCCAACATATTCACC 60.134 52.381 0.00 0.00 0.00 4.02
279 280 2.325583 TCGCCTCCCAACATATTCAC 57.674 50.000 0.00 0.00 0.00 3.18
280 281 3.013921 GTTTCGCCTCCCAACATATTCA 58.986 45.455 0.00 0.00 0.00 2.57
281 282 3.279434 AGTTTCGCCTCCCAACATATTC 58.721 45.455 0.00 0.00 0.00 1.75
282 283 3.366052 AGTTTCGCCTCCCAACATATT 57.634 42.857 0.00 0.00 0.00 1.28
283 284 4.706842 ATAGTTTCGCCTCCCAACATAT 57.293 40.909 0.00 0.00 0.00 1.78
284 285 5.607477 CTTATAGTTTCGCCTCCCAACATA 58.393 41.667 0.00 0.00 0.00 2.29
285 286 4.451900 CTTATAGTTTCGCCTCCCAACAT 58.548 43.478 0.00 0.00 0.00 2.71
286 287 3.869065 CTTATAGTTTCGCCTCCCAACA 58.131 45.455 0.00 0.00 0.00 3.33
287 288 2.612672 GCTTATAGTTTCGCCTCCCAAC 59.387 50.000 0.00 0.00 0.00 3.77
288 289 2.420967 GGCTTATAGTTTCGCCTCCCAA 60.421 50.000 0.00 0.00 39.42 4.12
289 290 1.140252 GGCTTATAGTTTCGCCTCCCA 59.860 52.381 0.00 0.00 39.42 4.37
290 291 1.542767 GGGCTTATAGTTTCGCCTCCC 60.543 57.143 0.00 0.00 42.13 4.30
291 292 1.542767 GGGGCTTATAGTTTCGCCTCC 60.543 57.143 0.00 0.00 42.13 4.30
292 293 1.416772 AGGGGCTTATAGTTTCGCCTC 59.583 52.381 0.00 0.00 43.40 4.70
293 294 1.508256 AGGGGCTTATAGTTTCGCCT 58.492 50.000 0.00 0.00 42.13 5.52
294 295 3.261137 AGATAGGGGCTTATAGTTTCGCC 59.739 47.826 0.00 0.00 41.75 5.54
295 296 4.538746 AGATAGGGGCTTATAGTTTCGC 57.461 45.455 0.00 0.00 0.00 4.70
296 297 6.760291 AGAAAGATAGGGGCTTATAGTTTCG 58.240 40.000 0.00 0.00 29.61 3.46
297 298 9.660180 CATAGAAAGATAGGGGCTTATAGTTTC 57.340 37.037 0.00 0.00 0.00 2.78
298 299 9.172060 ACATAGAAAGATAGGGGCTTATAGTTT 57.828 33.333 0.00 0.00 0.00 2.66
299 300 8.598041 CACATAGAAAGATAGGGGCTTATAGTT 58.402 37.037 0.00 0.00 0.00 2.24
300 301 7.735321 ACACATAGAAAGATAGGGGCTTATAGT 59.265 37.037 0.00 0.00 0.00 2.12
301 302 8.140112 ACACATAGAAAGATAGGGGCTTATAG 57.860 38.462 0.00 0.00 0.00 1.31
302 303 7.180408 GGACACATAGAAAGATAGGGGCTTATA 59.820 40.741 0.00 0.00 0.00 0.98
303 304 6.013293 GGACACATAGAAAGATAGGGGCTTAT 60.013 42.308 0.00 0.00 0.00 1.73
304 305 5.307196 GGACACATAGAAAGATAGGGGCTTA 59.693 44.000 0.00 0.00 0.00 3.09
305 306 4.103311 GGACACATAGAAAGATAGGGGCTT 59.897 45.833 0.00 0.00 0.00 4.35
306 307 3.648545 GGACACATAGAAAGATAGGGGCT 59.351 47.826 0.00 0.00 0.00 5.19
307 308 3.555168 CGGACACATAGAAAGATAGGGGC 60.555 52.174 0.00 0.00 0.00 5.80
308 309 3.895656 TCGGACACATAGAAAGATAGGGG 59.104 47.826 0.00 0.00 0.00 4.79
309 310 5.730296 ATCGGACACATAGAAAGATAGGG 57.270 43.478 0.00 0.00 0.00 3.53
310 311 6.749139 TCAATCGGACACATAGAAAGATAGG 58.251 40.000 0.00 0.00 0.00 2.57
311 312 8.543774 GTTTCAATCGGACACATAGAAAGATAG 58.456 37.037 0.00 0.00 0.00 2.08
312 313 7.222031 CGTTTCAATCGGACACATAGAAAGATA 59.778 37.037 0.00 0.00 0.00 1.98
313 314 6.036083 CGTTTCAATCGGACACATAGAAAGAT 59.964 38.462 0.00 0.00 0.00 2.40
314 315 5.347635 CGTTTCAATCGGACACATAGAAAGA 59.652 40.000 0.00 0.00 0.00 2.52
315 316 5.120208 ACGTTTCAATCGGACACATAGAAAG 59.880 40.000 0.00 0.00 0.00 2.62
316 317 4.992319 ACGTTTCAATCGGACACATAGAAA 59.008 37.500 0.00 0.00 0.00 2.52
317 318 4.562082 ACGTTTCAATCGGACACATAGAA 58.438 39.130 0.00 0.00 0.00 2.10
318 319 4.182693 ACGTTTCAATCGGACACATAGA 57.817 40.909 0.00 0.00 0.00 1.98
319 320 4.921470 AACGTTTCAATCGGACACATAG 57.079 40.909 0.00 0.00 0.00 2.23
320 321 5.444983 CAAAACGTTTCAATCGGACACATA 58.555 37.500 15.01 0.00 0.00 2.29
321 322 4.286910 CAAAACGTTTCAATCGGACACAT 58.713 39.130 15.01 0.00 0.00 3.21
322 323 3.686128 CAAAACGTTTCAATCGGACACA 58.314 40.909 15.01 0.00 0.00 3.72
323 324 2.466205 GCAAAACGTTTCAATCGGACAC 59.534 45.455 15.01 0.00 0.00 3.67
324 325 2.356382 AGCAAAACGTTTCAATCGGACA 59.644 40.909 15.01 0.00 0.00 4.02
325 326 2.971261 GAGCAAAACGTTTCAATCGGAC 59.029 45.455 15.01 0.00 0.00 4.79
326 327 2.614520 TGAGCAAAACGTTTCAATCGGA 59.385 40.909 15.01 0.00 0.00 4.55
327 328 2.993545 TGAGCAAAACGTTTCAATCGG 58.006 42.857 15.01 1.67 0.00 4.18
328 329 3.974401 ACATGAGCAAAACGTTTCAATCG 59.026 39.130 15.01 4.18 0.00 3.34
329 330 4.739716 ACACATGAGCAAAACGTTTCAATC 59.260 37.500 15.01 12.32 0.00 2.67
330 331 4.681744 ACACATGAGCAAAACGTTTCAAT 58.318 34.783 15.01 2.66 0.00 2.57
331 332 4.103365 ACACATGAGCAAAACGTTTCAA 57.897 36.364 15.01 0.00 0.00 2.69
332 333 3.773860 ACACATGAGCAAAACGTTTCA 57.226 38.095 15.01 8.49 0.00 2.69
333 334 4.088496 GCATACACATGAGCAAAACGTTTC 59.912 41.667 15.01 2.54 33.67 2.78
334 335 3.980775 GCATACACATGAGCAAAACGTTT 59.019 39.130 7.96 7.96 33.67 3.60
335 336 3.564511 GCATACACATGAGCAAAACGTT 58.435 40.909 0.00 0.00 33.67 3.99
336 337 2.412716 CGCATACACATGAGCAAAACGT 60.413 45.455 0.00 0.00 33.67 3.99
337 338 2.168384 CGCATACACATGAGCAAAACG 58.832 47.619 0.00 0.00 33.67 3.60
338 339 2.095263 ACCGCATACACATGAGCAAAAC 60.095 45.455 0.00 0.00 33.67 2.43
339 340 2.095314 CACCGCATACACATGAGCAAAA 60.095 45.455 0.00 0.00 33.67 2.44
340 341 1.468127 CACCGCATACACATGAGCAAA 59.532 47.619 0.00 0.00 33.67 3.68
341 342 1.085893 CACCGCATACACATGAGCAA 58.914 50.000 0.00 0.00 33.67 3.91
342 343 0.248843 TCACCGCATACACATGAGCA 59.751 50.000 0.00 0.00 33.67 4.26
343 344 0.933097 CTCACCGCATACACATGAGC 59.067 55.000 0.00 0.00 33.67 4.26
344 345 1.929169 CACTCACCGCATACACATGAG 59.071 52.381 0.00 0.00 42.07 2.90
345 346 1.275010 ACACTCACCGCATACACATGA 59.725 47.619 0.00 0.00 33.67 3.07
346 347 1.725641 ACACTCACCGCATACACATG 58.274 50.000 0.00 0.00 35.07 3.21
347 348 2.472695 AACACTCACCGCATACACAT 57.527 45.000 0.00 0.00 0.00 3.21
348 349 2.929161 GCTAACACTCACCGCATACACA 60.929 50.000 0.00 0.00 0.00 3.72
349 350 1.659098 GCTAACACTCACCGCATACAC 59.341 52.381 0.00 0.00 0.00 2.90
350 351 1.273886 TGCTAACACTCACCGCATACA 59.726 47.619 0.00 0.00 0.00 2.29
351 352 2.004583 TGCTAACACTCACCGCATAC 57.995 50.000 0.00 0.00 0.00 2.39
352 353 2.753055 TTGCTAACACTCACCGCATA 57.247 45.000 0.00 0.00 0.00 3.14
353 354 2.009774 GATTGCTAACACTCACCGCAT 58.990 47.619 0.00 0.00 0.00 4.73
354 355 1.270571 TGATTGCTAACACTCACCGCA 60.271 47.619 0.00 0.00 31.15 5.69
355 356 1.438651 TGATTGCTAACACTCACCGC 58.561 50.000 0.00 0.00 31.15 5.68
356 357 4.180817 TGTATGATTGCTAACACTCACCG 58.819 43.478 0.00 0.00 38.18 4.94
357 358 5.874810 TCTTGTATGATTGCTAACACTCACC 59.125 40.000 0.00 0.00 38.18 4.02
358 359 6.591834 AGTCTTGTATGATTGCTAACACTCAC 59.408 38.462 0.00 0.00 38.18 3.51
359 360 6.701340 AGTCTTGTATGATTGCTAACACTCA 58.299 36.000 0.00 0.00 39.49 3.41
360 361 8.879342 ATAGTCTTGTATGATTGCTAACACTC 57.121 34.615 0.00 0.00 0.00 3.51
367 368 8.600668 ACCATCATATAGTCTTGTATGATTGCT 58.399 33.333 13.64 4.53 42.20 3.91
368 369 8.783833 ACCATCATATAGTCTTGTATGATTGC 57.216 34.615 13.64 0.00 42.20 3.56
372 373 9.147732 ACTCAACCATCATATAGTCTTGTATGA 57.852 33.333 9.01 9.01 40.33 2.15
376 377 8.928448 ACATACTCAACCATCATATAGTCTTGT 58.072 33.333 0.00 0.00 0.00 3.16
377 378 9.201127 CACATACTCAACCATCATATAGTCTTG 57.799 37.037 0.00 0.00 0.00 3.02
378 379 8.370940 CCACATACTCAACCATCATATAGTCTT 58.629 37.037 0.00 0.00 0.00 3.01
379 380 7.730332 TCCACATACTCAACCATCATATAGTCT 59.270 37.037 0.00 0.00 0.00 3.24
380 381 7.815068 GTCCACATACTCAACCATCATATAGTC 59.185 40.741 0.00 0.00 0.00 2.59
381 382 7.510685 AGTCCACATACTCAACCATCATATAGT 59.489 37.037 0.00 0.00 0.00 2.12
382 383 7.901029 AGTCCACATACTCAACCATCATATAG 58.099 38.462 0.00 0.00 0.00 1.31
383 384 7.855784 AGTCCACATACTCAACCATCATATA 57.144 36.000 0.00 0.00 0.00 0.86
384 385 6.753913 AGTCCACATACTCAACCATCATAT 57.246 37.500 0.00 0.00 0.00 1.78
385 386 6.348498 CAAGTCCACATACTCAACCATCATA 58.652 40.000 0.00 0.00 0.00 2.15
386 387 5.188434 CAAGTCCACATACTCAACCATCAT 58.812 41.667 0.00 0.00 0.00 2.45
387 388 4.578871 CAAGTCCACATACTCAACCATCA 58.421 43.478 0.00 0.00 0.00 3.07
388 389 3.375299 GCAAGTCCACATACTCAACCATC 59.625 47.826 0.00 0.00 0.00 3.51
389 390 3.347216 GCAAGTCCACATACTCAACCAT 58.653 45.455 0.00 0.00 0.00 3.55
390 391 2.552155 GGCAAGTCCACATACTCAACCA 60.552 50.000 0.00 0.00 34.01 3.67
391 392 2.084546 GGCAAGTCCACATACTCAACC 58.915 52.381 0.00 0.00 34.01 3.77
392 393 3.059352 AGGCAAGTCCACATACTCAAC 57.941 47.619 0.00 0.00 37.29 3.18
393 394 4.901197 TTAGGCAAGTCCACATACTCAA 57.099 40.909 0.00 0.00 37.29 3.02
394 395 4.575885 GTTTAGGCAAGTCCACATACTCA 58.424 43.478 0.00 0.00 37.29 3.41
395 396 3.617263 CGTTTAGGCAAGTCCACATACTC 59.383 47.826 0.00 0.00 37.29 2.59
396 397 3.596214 CGTTTAGGCAAGTCCACATACT 58.404 45.455 0.00 0.00 37.29 2.12
397 398 2.095372 GCGTTTAGGCAAGTCCACATAC 59.905 50.000 0.00 0.00 37.29 2.39
398 399 2.027561 AGCGTTTAGGCAAGTCCACATA 60.028 45.455 0.00 0.00 37.29 2.29
399 400 1.165270 GCGTTTAGGCAAGTCCACAT 58.835 50.000 0.00 0.00 37.29 3.21
400 401 0.107831 AGCGTTTAGGCAAGTCCACA 59.892 50.000 0.00 0.00 37.29 4.17
401 402 0.796927 GAGCGTTTAGGCAAGTCCAC 59.203 55.000 0.00 0.00 37.29 4.02
402 403 0.321298 GGAGCGTTTAGGCAAGTCCA 60.321 55.000 0.00 0.00 37.29 4.02
403 404 1.359459 CGGAGCGTTTAGGCAAGTCC 61.359 60.000 0.00 0.00 34.64 3.85
404 405 0.389426 TCGGAGCGTTTAGGCAAGTC 60.389 55.000 0.00 0.00 34.64 3.01
405 406 0.249398 ATCGGAGCGTTTAGGCAAGT 59.751 50.000 0.00 0.00 34.64 3.16
406 407 1.859080 GTATCGGAGCGTTTAGGCAAG 59.141 52.381 0.00 0.00 34.64 4.01
407 408 1.799917 CGTATCGGAGCGTTTAGGCAA 60.800 52.381 0.00 0.00 34.64 4.52
408 409 0.248743 CGTATCGGAGCGTTTAGGCA 60.249 55.000 0.00 0.00 34.64 4.75
409 410 0.248784 ACGTATCGGAGCGTTTAGGC 60.249 55.000 4.86 0.00 38.21 3.93
410 411 1.064505 TCACGTATCGGAGCGTTTAGG 59.935 52.381 7.51 0.00 39.48 2.69
411 412 2.107178 GTCACGTATCGGAGCGTTTAG 58.893 52.381 7.51 0.00 39.48 1.85
412 413 1.202177 GGTCACGTATCGGAGCGTTTA 60.202 52.381 7.51 0.00 39.48 2.01
413 414 0.457337 GGTCACGTATCGGAGCGTTT 60.457 55.000 7.51 0.00 39.48 3.60
414 415 1.138247 GGTCACGTATCGGAGCGTT 59.862 57.895 7.51 0.00 39.48 4.84
415 416 2.768492 GGGTCACGTATCGGAGCGT 61.768 63.158 4.86 4.86 42.45 5.07
416 417 2.001361 AAGGGTCACGTATCGGAGCG 62.001 60.000 0.00 3.71 32.51 5.03
417 418 0.248949 GAAGGGTCACGTATCGGAGC 60.249 60.000 0.00 0.00 0.00 4.70
418 419 0.384669 GGAAGGGTCACGTATCGGAG 59.615 60.000 0.00 0.00 0.00 4.63
419 420 0.033796 AGGAAGGGTCACGTATCGGA 60.034 55.000 0.00 0.00 0.00 4.55
420 421 0.102481 CAGGAAGGGTCACGTATCGG 59.898 60.000 0.00 0.00 0.00 4.18
421 422 1.100510 TCAGGAAGGGTCACGTATCG 58.899 55.000 0.00 0.00 0.00 2.92
422 423 3.604875 TTTCAGGAAGGGTCACGTATC 57.395 47.619 0.00 0.00 0.00 2.24
423 424 3.581332 TCTTTTCAGGAAGGGTCACGTAT 59.419 43.478 0.00 0.00 0.00 3.06
424 425 2.967201 TCTTTTCAGGAAGGGTCACGTA 59.033 45.455 0.00 0.00 0.00 3.57
425 426 1.766496 TCTTTTCAGGAAGGGTCACGT 59.234 47.619 0.00 0.00 0.00 4.49
426 427 2.543777 TCTTTTCAGGAAGGGTCACG 57.456 50.000 0.00 0.00 0.00 4.35
427 428 4.021102 TCATCTTTTCAGGAAGGGTCAC 57.979 45.455 0.00 0.00 0.00 3.67
428 429 4.289410 TCATCATCTTTTCAGGAAGGGTCA 59.711 41.667 0.00 0.00 0.00 4.02
429 430 4.848357 TCATCATCTTTTCAGGAAGGGTC 58.152 43.478 0.00 0.00 0.00 4.46
430 431 4.934797 TCATCATCTTTTCAGGAAGGGT 57.065 40.909 0.00 0.00 0.00 4.34
431 432 6.154021 ACAATTCATCATCTTTTCAGGAAGGG 59.846 38.462 0.00 0.00 0.00 3.95
432 433 7.166691 ACAATTCATCATCTTTTCAGGAAGG 57.833 36.000 0.00 0.00 0.00 3.46
433 434 8.954350 ACTACAATTCATCATCTTTTCAGGAAG 58.046 33.333 0.00 0.00 0.00 3.46
434 435 8.868522 ACTACAATTCATCATCTTTTCAGGAA 57.131 30.769 0.00 0.00 0.00 3.36
435 436 8.733458 CAACTACAATTCATCATCTTTTCAGGA 58.267 33.333 0.00 0.00 0.00 3.86
436 437 7.487189 GCAACTACAATTCATCATCTTTTCAGG 59.513 37.037 0.00 0.00 0.00 3.86
437 438 8.024865 TGCAACTACAATTCATCATCTTTTCAG 58.975 33.333 0.00 0.00 0.00 3.02
438 439 7.884257 TGCAACTACAATTCATCATCTTTTCA 58.116 30.769 0.00 0.00 0.00 2.69
439 440 8.746922 TTGCAACTACAATTCATCATCTTTTC 57.253 30.769 0.00 0.00 0.00 2.29
440 441 9.199982 CTTTGCAACTACAATTCATCATCTTTT 57.800 29.630 0.00 0.00 0.00 2.27
441 442 8.362639 ACTTTGCAACTACAATTCATCATCTTT 58.637 29.630 0.00 0.00 0.00 2.52
442 443 7.889469 ACTTTGCAACTACAATTCATCATCTT 58.111 30.769 0.00 0.00 0.00 2.40
443 444 7.458409 ACTTTGCAACTACAATTCATCATCT 57.542 32.000 0.00 0.00 0.00 2.90
444 445 7.809331 TCAACTTTGCAACTACAATTCATCATC 59.191 33.333 0.00 0.00 0.00 2.92
445 446 7.596248 GTCAACTTTGCAACTACAATTCATCAT 59.404 33.333 0.00 0.00 0.00 2.45
446 447 6.917477 GTCAACTTTGCAACTACAATTCATCA 59.083 34.615 0.00 0.00 0.00 3.07
447 448 7.113965 CAGTCAACTTTGCAACTACAATTCATC 59.886 37.037 0.00 0.00 0.00 2.92
448 449 6.919662 CAGTCAACTTTGCAACTACAATTCAT 59.080 34.615 0.00 0.00 0.00 2.57
449 450 6.094742 TCAGTCAACTTTGCAACTACAATTCA 59.905 34.615 0.00 0.00 0.00 2.57
450 451 6.494842 TCAGTCAACTTTGCAACTACAATTC 58.505 36.000 0.00 0.00 0.00 2.17
451 452 6.449635 TCAGTCAACTTTGCAACTACAATT 57.550 33.333 0.00 0.00 0.00 2.32
452 453 6.127758 TGTTCAGTCAACTTTGCAACTACAAT 60.128 34.615 0.00 0.00 35.79 2.71
453 454 5.182190 TGTTCAGTCAACTTTGCAACTACAA 59.818 36.000 0.00 0.00 35.79 2.41
454 455 4.697828 TGTTCAGTCAACTTTGCAACTACA 59.302 37.500 0.00 0.00 35.79 2.74
455 456 5.229921 TGTTCAGTCAACTTTGCAACTAC 57.770 39.130 0.00 0.00 35.79 2.73
456 457 6.765989 ACTATGTTCAGTCAACTTTGCAACTA 59.234 34.615 0.00 0.00 35.79 2.24
457 458 4.989279 ATGTTCAGTCAACTTTGCAACT 57.011 36.364 0.00 0.00 35.79 3.16
458 459 5.821204 ACTATGTTCAGTCAACTTTGCAAC 58.179 37.500 0.00 0.00 35.79 4.17
459 460 6.449635 AACTATGTTCAGTCAACTTTGCAA 57.550 33.333 0.00 0.00 35.79 4.08
460 461 6.127758 ACAAACTATGTTCAGTCAACTTTGCA 60.128 34.615 0.00 0.00 40.06 4.08
461 462 6.265577 ACAAACTATGTTCAGTCAACTTTGC 58.734 36.000 0.00 0.00 40.06 3.68
475 476 7.724061 ACTCTATTGGAAACCAACAAACTATGT 59.276 33.333 5.33 0.00 46.95 2.29
476 477 8.110860 ACTCTATTGGAAACCAACAAACTATG 57.889 34.615 5.33 0.00 46.95 2.23
477 478 8.706322 AACTCTATTGGAAACCAACAAACTAT 57.294 30.769 5.33 0.00 46.95 2.12
478 479 8.528044 AAACTCTATTGGAAACCAACAAACTA 57.472 30.769 5.33 0.00 46.95 2.24
479 480 7.418337 AAACTCTATTGGAAACCAACAAACT 57.582 32.000 5.33 0.00 46.95 2.66
480 481 8.487313 AAAAACTCTATTGGAAACCAACAAAC 57.513 30.769 5.33 0.00 46.95 2.93
481 482 9.589111 GTAAAAACTCTATTGGAAACCAACAAA 57.411 29.630 5.33 0.00 46.95 2.83
482 483 8.198778 GGTAAAAACTCTATTGGAAACCAACAA 58.801 33.333 5.33 0.00 46.95 2.83
483 484 7.562088 AGGTAAAAACTCTATTGGAAACCAACA 59.438 33.333 5.33 0.00 46.95 3.33
484 485 7.948357 AGGTAAAAACTCTATTGGAAACCAAC 58.052 34.615 5.33 0.00 46.95 3.77
486 487 9.816787 ATAAGGTAAAAACTCTATTGGAAACCA 57.183 29.630 0.00 0.00 0.00 3.67
504 505 9.952030 TCATCACAACATTGAAGTATAAGGTAA 57.048 29.630 0.00 0.00 0.00 2.85
505 506 9.952030 TTCATCACAACATTGAAGTATAAGGTA 57.048 29.630 0.00 0.00 0.00 3.08
506 507 8.862325 TTCATCACAACATTGAAGTATAAGGT 57.138 30.769 0.00 0.00 0.00 3.50
509 510 9.571810 GCAATTCATCACAACATTGAAGTATAA 57.428 29.630 0.00 0.00 33.26 0.98
510 511 8.959548 AGCAATTCATCACAACATTGAAGTATA 58.040 29.630 0.00 0.00 33.26 1.47
511 512 7.833786 AGCAATTCATCACAACATTGAAGTAT 58.166 30.769 0.00 0.00 33.26 2.12
512 513 7.218228 AGCAATTCATCACAACATTGAAGTA 57.782 32.000 0.00 0.00 33.26 2.24
513 514 6.092955 AGCAATTCATCACAACATTGAAGT 57.907 33.333 0.00 0.00 33.26 3.01
514 515 7.310664 AGTAGCAATTCATCACAACATTGAAG 58.689 34.615 0.00 0.00 33.26 3.02
515 516 7.218228 AGTAGCAATTCATCACAACATTGAA 57.782 32.000 0.00 0.00 34.18 2.69
516 517 6.822667 AGTAGCAATTCATCACAACATTGA 57.177 33.333 0.00 0.00 0.00 2.57
517 518 9.577110 AATAAGTAGCAATTCATCACAACATTG 57.423 29.630 0.00 0.00 0.00 2.82
518 519 9.793252 GAATAAGTAGCAATTCATCACAACATT 57.207 29.630 0.00 0.00 33.26 2.71
519 520 8.959548 TGAATAAGTAGCAATTCATCACAACAT 58.040 29.630 0.00 0.00 37.23 2.71
520 521 8.334263 TGAATAAGTAGCAATTCATCACAACA 57.666 30.769 0.00 0.00 37.23 3.33
521 522 9.229784 CATGAATAAGTAGCAATTCATCACAAC 57.770 33.333 7.41 0.00 45.31 3.32
522 523 9.176460 TCATGAATAAGTAGCAATTCATCACAA 57.824 29.630 7.41 0.00 45.31 3.33
523 524 8.615211 GTCATGAATAAGTAGCAATTCATCACA 58.385 33.333 0.00 0.00 45.31 3.58
524 525 8.615211 TGTCATGAATAAGTAGCAATTCATCAC 58.385 33.333 0.00 6.39 45.31 3.06
525 526 8.735692 TGTCATGAATAAGTAGCAATTCATCA 57.264 30.769 0.00 2.68 45.31 3.07
526 527 9.661187 CTTGTCATGAATAAGTAGCAATTCATC 57.339 33.333 0.00 0.51 45.31 2.92
528 529 8.565896 ACTTGTCATGAATAAGTAGCAATTCA 57.434 30.769 19.56 0.68 44.00 2.57
529 530 8.887717 AGACTTGTCATGAATAAGTAGCAATTC 58.112 33.333 20.49 11.49 34.99 2.17
530 531 8.798859 AGACTTGTCATGAATAAGTAGCAATT 57.201 30.769 20.49 4.40 34.99 2.32
532 533 9.317936 CATAGACTTGTCATGAATAAGTAGCAA 57.682 33.333 20.49 8.28 34.99 3.91
533 534 8.695456 TCATAGACTTGTCATGAATAAGTAGCA 58.305 33.333 20.49 12.26 34.99 3.49
534 535 9.703892 ATCATAGACTTGTCATGAATAAGTAGC 57.296 33.333 20.49 12.62 34.99 3.58
579 580 5.878116 GGGCAAAAGGATAATTAACCCAAAC 59.122 40.000 8.09 0.00 34.82 2.93
673 674 1.299850 CACAGAACGAGTCGGTGCA 60.300 57.895 18.30 0.00 43.94 4.57
759 760 3.426615 ACGGTCTGAATAAAATTGGCCA 58.573 40.909 0.00 0.00 0.00 5.36
887 906 1.394227 GTCGTGATCTCGTTCTCTCGT 59.606 52.381 16.03 0.00 32.09 4.18
895 914 4.175489 CCGCCGTCGTGATCTCGT 62.175 66.667 16.03 0.00 0.00 4.18
948 967 1.888436 CTGCGCCCTCCACAACTAGA 61.888 60.000 4.18 0.00 0.00 2.43
966 985 3.112075 CGTGATGTCAACGCCGCT 61.112 61.111 0.00 0.00 0.00 5.52
977 996 2.180769 TCGGAGCCGAACGTGATG 59.819 61.111 9.50 0.00 46.01 3.07
1031 1050 2.285773 TGCACCCGACTCTGCATCT 61.286 57.895 0.00 0.00 38.49 2.90
1049 1068 3.639672 TGAAGACATGCATCTCCACAT 57.360 42.857 0.00 0.00 0.00 3.21
1119 1138 2.249844 ACGAACGATTGTGGTTCCTT 57.750 45.000 0.14 0.00 40.46 3.36
1196 1215 1.281867 ACCGATTGCTCAAAGATCCCA 59.718 47.619 0.00 0.00 0.00 4.37
1428 1447 8.768397 TGATCTTCAAGCTTCCTAACCTTATTA 58.232 33.333 0.00 0.00 0.00 0.98
1431 1456 6.620877 TGATCTTCAAGCTTCCTAACCTTA 57.379 37.500 0.00 0.00 0.00 2.69
1475 1500 6.268847 ACCTACAAATGCCCAAAAGTATTTGA 59.731 34.615 17.92 5.21 46.55 2.69
1696 1731 9.414295 CTGCATTTCATTGATCAAAAGTTTCTA 57.586 29.630 13.09 0.00 0.00 2.10
1874 1909 7.634526 TTTTTGGGAATTAGGGGTAAAACAT 57.365 32.000 0.00 0.00 0.00 2.71
1898 1933 0.773644 ACTTGGGCAGAACCAGTGAT 59.226 50.000 0.00 0.00 42.47 3.06
1903 1938 0.550914 AAGTGACTTGGGCAGAACCA 59.449 50.000 0.00 0.00 42.05 3.67
1911 1946 1.072965 AGAGGAGCAAAGTGACTTGGG 59.927 52.381 0.00 0.00 0.00 4.12
2175 2212 3.287222 ACTTGGCAAGCACTTAGAACAA 58.713 40.909 26.45 0.00 0.00 2.83
2237 2274 8.579850 AACAATCAGCACTCCAAAATAGATTA 57.420 30.769 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.