Multiple sequence alignment - TraesCS1B01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G250600 chr1B 100.000 5569 0 0 1 5569 442627669 442622101 0.000000e+00 10285.0
1 TraesCS1B01G250600 chr1D 92.658 2547 92 39 752 3228 328458943 328456422 0.000000e+00 3579.0
2 TraesCS1B01G250600 chr1D 89.180 1146 69 24 3786 4892 328455629 328454500 0.000000e+00 1378.0
3 TraesCS1B01G250600 chr1D 94.491 599 29 3 4926 5520 328454425 328453827 0.000000e+00 920.0
4 TraesCS1B01G250600 chr1D 92.424 396 30 0 3224 3619 328456191 328455796 2.910000e-157 566.0
5 TraesCS1B01G250600 chr1D 92.908 141 9 1 523 663 328459108 328458969 2.630000e-48 204.0
6 TraesCS1B01G250600 chr1A 93.523 1374 76 7 2255 3618 425264011 425262641 0.000000e+00 2032.0
7 TraesCS1B01G250600 chr1A 93.250 1363 81 10 2255 3615 417400603 417399250 0.000000e+00 1997.0
8 TraesCS1B01G250600 chr1A 88.950 1466 58 45 752 2161 425265452 425264035 0.000000e+00 1714.0
9 TraesCS1B01G250600 chr1A 91.258 1121 47 24 4165 5262 417398539 417397447 0.000000e+00 1480.0
10 TraesCS1B01G250600 chr1A 89.895 1138 71 17 3780 4892 425261174 425260056 0.000000e+00 1424.0
11 TraesCS1B01G250600 chr1A 91.004 767 30 13 752 1503 417410085 417409343 0.000000e+00 998.0
12 TraesCS1B01G250600 chr1A 93.189 602 35 4 4926 5522 425259981 425259381 0.000000e+00 880.0
13 TraesCS1B01G250600 chr1A 86.686 706 31 25 1494 2161 417401306 417400626 0.000000e+00 725.0
14 TraesCS1B01G250600 chr1A 80.980 347 37 10 3780 4110 417399085 417398752 1.200000e-61 248.0
15 TraesCS1B01G250600 chr1A 87.898 157 9 6 5372 5520 417397324 417397170 5.730000e-40 176.0
16 TraesCS1B01G250600 chr1A 88.525 122 13 1 543 663 417410843 417410722 4.500000e-31 147.0
17 TraesCS1B01G250600 chr1A 96.552 58 2 0 606 663 425265535 425265478 4.590000e-16 97.1
18 TraesCS1B01G250600 chr1A 100.000 28 0 0 2158 2185 417400614 417400587 1.000000e-02 52.8
19 TraesCS1B01G250600 chr3B 86.641 524 53 12 2 521 602284858 602284348 1.050000e-156 564.0
20 TraesCS1B01G250600 chr7D 86.481 540 34 17 1434 1938 75655402 75654867 1.750000e-154 556.0
21 TraesCS1B01G250600 chr4B 85.955 534 54 16 1 525 426141362 426141883 8.150000e-153 551.0
22 TraesCS1B01G250600 chr4B 84.601 539 63 15 2 534 623157969 623157445 8.270000e-143 518.0
23 TraesCS1B01G250600 chrUn 85.579 527 57 14 2 521 9635687 9635173 8.210000e-148 534.0
24 TraesCS1B01G250600 chr6B 85.417 528 59 13 2 525 643142894 643142381 2.950000e-147 532.0
25 TraesCS1B01G250600 chr6B 89.655 58 5 1 2103 2159 602828553 602828610 7.740000e-09 73.1
26 TraesCS1B01G250600 chr6B 88.333 60 6 1 2103 2161 713700309 713700250 2.780000e-08 71.3
27 TraesCS1B01G250600 chr3A 85.356 519 61 9 7 521 598540831 598540324 1.780000e-144 523.0
28 TraesCS1B01G250600 chr6D 84.898 245 35 2 264 508 436235035 436235277 4.310000e-61 246.0
29 TraesCS1B01G250600 chr2B 84.889 225 31 3 301 525 150889132 150889353 2.020000e-54 224.0
30 TraesCS1B01G250600 chr2B 90.789 76 4 1 2185 2257 541109759 541109684 1.280000e-16 99.0
31 TraesCS1B01G250600 chr2B 90.000 60 4 2 2103 2161 143773562 143773620 5.980000e-10 76.8
32 TraesCS1B01G250600 chr7A 82.308 260 43 3 264 522 691643518 691643261 7.260000e-54 222.0
33 TraesCS1B01G250600 chr4A 87.179 78 8 1 200 277 395320425 395320500 2.760000e-13 87.9
34 TraesCS1B01G250600 chr4A 89.655 58 4 2 2103 2159 625404795 625404851 7.740000e-09 73.1
35 TraesCS1B01G250600 chr5D 91.379 58 4 1 2103 2159 134916512 134916569 1.660000e-10 78.7
36 TraesCS1B01G250600 chr2A 90.164 61 3 3 2103 2161 715965612 715965671 5.980000e-10 76.8
37 TraesCS1B01G250600 chr6A 89.655 58 5 1 2103 2159 548408078 548408135 7.740000e-09 73.1
38 TraesCS1B01G250600 chr5B 89.655 58 5 1 2103 2159 146365765 146365822 7.740000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G250600 chr1B 442622101 442627669 5568 True 10285.00 10285 100.0000 1 5569 1 chr1B.!!$R1 5568
1 TraesCS1B01G250600 chr1D 328453827 328459108 5281 True 1329.40 3579 92.3322 523 5520 5 chr1D.!!$R1 4997
2 TraesCS1B01G250600 chr1A 425259381 425265535 6154 True 1229.42 2032 92.4218 606 5522 5 chr1A.!!$R3 4916
3 TraesCS1B01G250600 chr1A 417397170 417401306 4136 True 779.80 1997 90.0120 1494 5520 6 chr1A.!!$R1 4026
4 TraesCS1B01G250600 chr1A 417409343 417410843 1500 True 572.50 998 89.7645 543 1503 2 chr1A.!!$R2 960
5 TraesCS1B01G250600 chr3B 602284348 602284858 510 True 564.00 564 86.6410 2 521 1 chr3B.!!$R1 519
6 TraesCS1B01G250600 chr7D 75654867 75655402 535 True 556.00 556 86.4810 1434 1938 1 chr7D.!!$R1 504
7 TraesCS1B01G250600 chr4B 426141362 426141883 521 False 551.00 551 85.9550 1 525 1 chr4B.!!$F1 524
8 TraesCS1B01G250600 chr4B 623157445 623157969 524 True 518.00 518 84.6010 2 534 1 chr4B.!!$R1 532
9 TraesCS1B01G250600 chrUn 9635173 9635687 514 True 534.00 534 85.5790 2 521 1 chrUn.!!$R1 519
10 TraesCS1B01G250600 chr6B 643142381 643142894 513 True 532.00 532 85.4170 2 525 1 chr6B.!!$R1 523
11 TraesCS1B01G250600 chr3A 598540324 598540831 507 True 523.00 523 85.3560 7 521 1 chr3A.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 363 0.171007 AAAAATGTCATGCCGAGCGG 59.829 50.000 4.2 4.2 38.57 5.52 F
663 677 0.249868 CAAAGTGGAGCCGACTCACA 60.250 55.000 0.0 0.0 45.42 3.58 F
765 1384 0.259938 AGCCCTTATTTCCAGCCCTG 59.740 55.000 0.0 0.0 0.00 4.45 F
2245 2972 0.106894 GCCCCTCTCTTTGTATCCCG 59.893 60.000 0.0 0.0 0.00 5.14 F
2906 3645 2.104792 AGTCTACCAAGAAGCAAGCACA 59.895 45.455 0.0 0.0 32.16 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2909 0.389166 GGCACGAGTCTCTCAACAGG 60.389 60.0 0.00 0.0 0.00 4.00 R
2224 2948 1.213296 GGATACAAAGAGAGGGGCCA 58.787 55.0 4.39 0.0 0.00 5.36 R
2710 3449 1.663695 ACCAACCTGTTCAAGTCACG 58.336 50.0 0.00 0.0 0.00 4.35 R
3409 4383 0.036765 TCTAGCACGCCCGAAAACAT 60.037 50.0 0.00 0.0 0.00 2.71 R
4762 7325 0.393537 AGCCTACATGCTCCACTTGC 60.394 55.0 0.00 0.0 36.75 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.642885 TCAGAATTTTGAAACCGGTGAACT 59.357 37.500 8.52 0.00 0.00 3.01
59 60 2.421775 ACTTGTGTTGATTTGTGCGTGA 59.578 40.909 0.00 0.00 0.00 4.35
116 122 3.256631 GGACCATCAACAAGTCAGCAATT 59.743 43.478 0.00 0.00 31.99 2.32
145 151 3.061322 GTGGCTCAACACGTACAATACA 58.939 45.455 0.00 0.00 0.00 2.29
185 195 8.135529 TCAATATGCACACACTAGTACTCATAC 58.864 37.037 0.00 0.00 0.00 2.39
187 197 5.055642 TGCACACACTAGTACTCATACAC 57.944 43.478 0.00 0.00 33.30 2.90
228 238 3.699038 GTGGAATTTTAGGTATGGCAGCA 59.301 43.478 0.00 0.00 0.00 4.41
254 264 5.775813 AATCCTAGCCAGATTGATAGCAT 57.224 39.130 0.00 0.00 32.74 3.79
255 265 5.775813 ATCCTAGCCAGATTGATAGCATT 57.224 39.130 0.00 0.00 0.00 3.56
257 267 4.349048 TCCTAGCCAGATTGATAGCATTGT 59.651 41.667 0.00 0.00 0.00 2.71
260 270 2.555757 GCCAGATTGATAGCATTGTCCC 59.444 50.000 0.00 0.00 0.00 4.46
261 271 3.749954 GCCAGATTGATAGCATTGTCCCT 60.750 47.826 0.00 0.00 0.00 4.20
263 273 4.445305 CCAGATTGATAGCATTGTCCCTGA 60.445 45.833 0.00 0.00 0.00 3.86
264 274 5.314529 CAGATTGATAGCATTGTCCCTGAT 58.685 41.667 0.00 0.00 0.00 2.90
265 275 5.768662 CAGATTGATAGCATTGTCCCTGATT 59.231 40.000 0.00 0.00 0.00 2.57
266 276 6.938596 CAGATTGATAGCATTGTCCCTGATTA 59.061 38.462 0.00 0.00 0.00 1.75
267 277 6.939163 AGATTGATAGCATTGTCCCTGATTAC 59.061 38.462 0.00 0.00 0.00 1.89
268 278 5.894298 TGATAGCATTGTCCCTGATTACT 57.106 39.130 0.00 0.00 0.00 2.24
269 279 5.614308 TGATAGCATTGTCCCTGATTACTG 58.386 41.667 0.00 0.00 0.00 2.74
270 280 5.366477 TGATAGCATTGTCCCTGATTACTGA 59.634 40.000 0.00 0.00 0.00 3.41
302 312 2.118683 CAAGCACAACAACGTTCATGG 58.881 47.619 12.89 0.00 0.00 3.66
306 316 2.926838 GCACAACAACGTTCATGGTTTT 59.073 40.909 12.89 0.00 0.00 2.43
309 319 4.031201 CACAACAACGTTCATGGTTTTCAC 59.969 41.667 12.89 0.00 0.00 3.18
340 353 6.325028 TGGAGGGTGTTTTCATAAAAATGTCA 59.675 34.615 0.00 0.00 36.77 3.58
350 363 0.171007 AAAAATGTCATGCCGAGCGG 59.829 50.000 4.20 4.20 38.57 5.52
354 367 4.778143 GTCATGCCGAGCGGGGTT 62.778 66.667 11.30 0.00 35.78 4.11
366 379 2.988684 GGGGTTTGCCATGACGCA 60.989 61.111 0.00 0.00 36.85 5.24
368 381 2.268076 GGGTTTGCCATGACGCAGT 61.268 57.895 0.00 0.00 40.53 4.40
382 395 2.918345 GCAGTCAATGTGGCGCCAA 61.918 57.895 34.66 21.87 0.00 4.52
388 401 0.737019 CAATGTGGCGCCAATTGTCC 60.737 55.000 33.19 23.30 0.00 4.02
389 402 2.211619 AATGTGGCGCCAATTGTCCG 62.212 55.000 34.66 7.94 0.00 4.79
403 416 1.234821 TGTCCGTTTGTGATTGGCTC 58.765 50.000 0.00 0.00 0.00 4.70
439 452 5.321102 TCACATACATTGCAAGTTTAGGGT 58.679 37.500 4.94 0.00 0.00 4.34
444 457 4.469657 ACATTGCAAGTTTAGGGTTGAGA 58.530 39.130 4.94 0.00 0.00 3.27
450 463 4.034510 GCAAGTTTAGGGTTGAGATGATCG 59.965 45.833 0.00 0.00 0.00 3.69
461 474 2.819019 TGAGATGATCGCCTTTTGCAAA 59.181 40.909 8.05 8.05 41.33 3.68
485 498 9.479549 AAATTTATGGACTAAACCATCACATCT 57.520 29.630 0.00 0.00 46.24 2.90
513 526 2.969950 AGTTTGTGGGTCTGTAGTGCTA 59.030 45.455 0.00 0.00 0.00 3.49
516 529 4.634012 TTGTGGGTCTGTAGTGCTATTT 57.366 40.909 0.00 0.00 0.00 1.40
517 530 3.937814 TGTGGGTCTGTAGTGCTATTTG 58.062 45.455 0.00 0.00 0.00 2.32
518 531 2.678336 GTGGGTCTGTAGTGCTATTTGC 59.322 50.000 0.00 0.00 43.25 3.68
519 532 2.289565 GGGTCTGTAGTGCTATTTGCC 58.710 52.381 0.00 0.00 42.00 4.52
520 533 2.092914 GGGTCTGTAGTGCTATTTGCCT 60.093 50.000 0.00 0.00 42.00 4.75
521 534 3.610911 GGTCTGTAGTGCTATTTGCCTT 58.389 45.455 0.00 0.00 42.00 4.35
562 575 7.816031 AGCTTATAACAAGTTAAACGAGTAGCA 59.184 33.333 0.00 0.00 0.00 3.49
572 585 1.235281 ACGAGTAGCACGTCAGCTCA 61.235 55.000 3.33 0.00 45.26 4.26
585 598 2.219674 GTCAGCTCAACTCGTTCAACTG 59.780 50.000 0.00 0.00 0.00 3.16
593 607 4.638421 TCAACTCGTTCAACTGGATTGTTT 59.362 37.500 0.00 0.00 39.54 2.83
599 613 4.210537 CGTTCAACTGGATTGTTTACGAGT 59.789 41.667 0.00 0.00 39.11 4.18
604 618 6.485313 TCAACTGGATTGTTTACGAGTTCAAT 59.515 34.615 0.00 0.00 39.54 2.57
663 677 0.249868 CAAAGTGGAGCCGACTCACA 60.250 55.000 0.00 0.00 45.42 3.58
664 678 0.468226 AAAGTGGAGCCGACTCACAA 59.532 50.000 0.00 0.00 45.42 3.33
674 1293 1.740585 CCGACTCACAACAACCAAACA 59.259 47.619 0.00 0.00 0.00 2.83
675 1294 2.223249 CCGACTCACAACAACCAAACAG 60.223 50.000 0.00 0.00 0.00 3.16
676 1295 2.791158 CGACTCACAACAACCAAACAGC 60.791 50.000 0.00 0.00 0.00 4.40
677 1296 2.423538 GACTCACAACAACCAAACAGCT 59.576 45.455 0.00 0.00 0.00 4.24
678 1297 3.616219 ACTCACAACAACCAAACAGCTA 58.384 40.909 0.00 0.00 0.00 3.32
681 1300 4.771903 TCACAACAACCAAACAGCTACTA 58.228 39.130 0.00 0.00 0.00 1.82
682 1301 4.573201 TCACAACAACCAAACAGCTACTAC 59.427 41.667 0.00 0.00 0.00 2.73
683 1302 4.574828 CACAACAACCAAACAGCTACTACT 59.425 41.667 0.00 0.00 0.00 2.57
684 1303 5.756347 CACAACAACCAAACAGCTACTACTA 59.244 40.000 0.00 0.00 0.00 1.82
685 1304 5.989777 ACAACAACCAAACAGCTACTACTAG 59.010 40.000 0.00 0.00 0.00 2.57
686 1305 5.148651 ACAACCAAACAGCTACTACTAGG 57.851 43.478 0.00 0.00 0.00 3.02
688 1307 5.306160 ACAACCAAACAGCTACTACTAGGAA 59.694 40.000 0.00 0.00 0.00 3.36
689 1308 6.183361 ACAACCAAACAGCTACTACTAGGAAA 60.183 38.462 0.00 0.00 0.00 3.13
690 1309 6.622427 ACCAAACAGCTACTACTAGGAAAT 57.378 37.500 0.00 0.00 0.00 2.17
691 1310 7.017319 ACCAAACAGCTACTACTAGGAAATT 57.983 36.000 0.00 0.00 0.00 1.82
692 1311 7.104290 ACCAAACAGCTACTACTAGGAAATTC 58.896 38.462 0.00 0.00 0.00 2.17
693 1312 6.539103 CCAAACAGCTACTACTAGGAAATTCC 59.461 42.308 3.29 3.29 36.58 3.01
694 1313 5.873146 ACAGCTACTACTAGGAAATTCCC 57.127 43.478 8.66 0.00 37.19 3.97
695 1314 5.278061 ACAGCTACTACTAGGAAATTCCCA 58.722 41.667 8.66 0.00 37.19 4.37
696 1315 5.364157 ACAGCTACTACTAGGAAATTCCCAG 59.636 44.000 8.66 7.20 37.19 4.45
697 1316 4.345547 AGCTACTACTAGGAAATTCCCAGC 59.654 45.833 8.66 6.44 37.19 4.85
698 1317 4.503469 GCTACTACTAGGAAATTCCCAGCC 60.503 50.000 8.66 0.00 37.19 4.85
699 1318 3.460825 ACTACTAGGAAATTCCCAGCCA 58.539 45.455 8.66 0.00 37.19 4.75
700 1319 2.808906 ACTAGGAAATTCCCAGCCAC 57.191 50.000 8.66 0.00 37.19 5.01
701 1320 1.065418 ACTAGGAAATTCCCAGCCACG 60.065 52.381 8.66 0.00 37.19 4.94
702 1321 0.393808 TAGGAAATTCCCAGCCACGC 60.394 55.000 8.66 0.00 37.19 5.34
703 1322 1.678970 GGAAATTCCCAGCCACGCT 60.679 57.895 0.00 0.00 40.77 5.07
704 1323 1.657751 GGAAATTCCCAGCCACGCTC 61.658 60.000 0.00 0.00 36.40 5.03
705 1324 1.657751 GAAATTCCCAGCCACGCTCC 61.658 60.000 0.00 0.00 36.40 4.70
706 1325 2.424842 AAATTCCCAGCCACGCTCCA 62.425 55.000 0.00 0.00 36.40 3.86
707 1326 2.826777 AATTCCCAGCCACGCTCCAG 62.827 60.000 0.00 0.00 36.40 3.86
709 1328 4.767255 CCCAGCCACGCTCCAGAC 62.767 72.222 0.00 0.00 36.40 3.51
710 1329 4.767255 CCAGCCACGCTCCAGACC 62.767 72.222 0.00 0.00 36.40 3.85
711 1330 4.007644 CAGCCACGCTCCAGACCA 62.008 66.667 0.00 0.00 36.40 4.02
712 1331 3.699894 AGCCACGCTCCAGACCAG 61.700 66.667 0.00 0.00 30.62 4.00
713 1332 4.767255 GCCACGCTCCAGACCAGG 62.767 72.222 0.00 0.00 0.00 4.45
714 1333 4.767255 CCACGCTCCAGACCAGGC 62.767 72.222 0.00 0.00 0.00 4.85
715 1334 4.007644 CACGCTCCAGACCAGGCA 62.008 66.667 0.00 0.00 0.00 4.75
716 1335 3.241530 ACGCTCCAGACCAGGCAA 61.242 61.111 0.00 0.00 0.00 4.52
717 1336 2.032528 CGCTCCAGACCAGGCAAA 59.967 61.111 0.00 0.00 0.00 3.68
718 1337 1.600636 CGCTCCAGACCAGGCAAAA 60.601 57.895 0.00 0.00 0.00 2.44
719 1338 1.172180 CGCTCCAGACCAGGCAAAAA 61.172 55.000 0.00 0.00 0.00 1.94
749 1368 2.991866 GTCACGAACCAAACTAGTAGCC 59.008 50.000 0.00 0.00 0.00 3.93
750 1369 2.028748 TCACGAACCAAACTAGTAGCCC 60.029 50.000 0.00 0.00 0.00 5.19
757 1376 6.036844 CGAACCAAACTAGTAGCCCTTATTTC 59.963 42.308 0.00 0.00 0.00 2.17
765 1384 0.259938 AGCCCTTATTTCCAGCCCTG 59.740 55.000 0.00 0.00 0.00 4.45
778 1397 1.056700 AGCCCTGCTTATCCATCCGT 61.057 55.000 0.00 0.00 33.89 4.69
781 1400 1.541233 CCCTGCTTATCCATCCGTCAC 60.541 57.143 0.00 0.00 0.00 3.67
784 1403 1.206132 TGCTTATCCATCCGTCACGTT 59.794 47.619 0.00 0.00 0.00 3.99
786 1405 2.201732 CTTATCCATCCGTCACGTTGG 58.798 52.381 9.60 9.60 32.15 3.77
788 1407 1.261938 ATCCATCCGTCACGTTGGGA 61.262 55.000 14.55 9.46 31.91 4.37
960 1595 3.302347 CTATCAGGATCGGCCGGCC 62.302 68.421 36.69 36.69 43.43 6.13
973 1608 2.125832 CGGCCATACACCGTCGTT 60.126 61.111 2.24 0.00 45.70 3.85
1131 1766 1.764054 CCTCCTCCGCCTTCCTGAT 60.764 63.158 0.00 0.00 0.00 2.90
1195 1838 3.368843 GCTCTGTCAGTCTTGGCTAATCA 60.369 47.826 0.00 0.00 0.00 2.57
1202 1845 1.207329 GTCTTGGCTAATCACCGGAGT 59.793 52.381 9.46 0.00 0.00 3.85
1258 1901 0.468400 GGGAGCTGATACGGAGGACT 60.468 60.000 0.00 0.00 0.00 3.85
1453 2096 3.777522 AGGTGAGAACCTTATCTGAAGGG 59.222 47.826 8.17 0.00 41.71 3.95
1482 2125 1.391933 GGAATGGATGAAACCCGGCC 61.392 60.000 0.00 0.00 0.00 6.13
1508 2169 5.808540 CGGCTTGTGCTTACTTAACACTATA 59.191 40.000 0.00 0.00 39.59 1.31
1572 2239 2.886523 CCACTTTCCTTGTCTGATTGCA 59.113 45.455 0.00 0.00 0.00 4.08
1601 2268 6.759827 GCCTAGTCTATGTTCGTTCCAATTTA 59.240 38.462 0.00 0.00 0.00 1.40
1745 2440 3.762288 CTGGTGGCCGTTAGCTAGATATA 59.238 47.826 0.00 0.00 43.05 0.86
1746 2441 4.350245 TGGTGGCCGTTAGCTAGATATAT 58.650 43.478 0.00 0.00 43.05 0.86
1747 2442 4.159693 TGGTGGCCGTTAGCTAGATATATG 59.840 45.833 0.00 0.00 43.05 1.78
1748 2443 4.441634 GGTGGCCGTTAGCTAGATATATGG 60.442 50.000 0.00 0.00 43.05 2.74
1749 2444 4.159879 GTGGCCGTTAGCTAGATATATGGT 59.840 45.833 0.00 0.00 43.05 3.55
1750 2445 4.775780 TGGCCGTTAGCTAGATATATGGTT 59.224 41.667 0.00 0.00 43.05 3.67
1751 2446 5.953548 TGGCCGTTAGCTAGATATATGGTTA 59.046 40.000 0.00 0.00 43.05 2.85
1861 2556 1.134560 CTAGAGTACGTTGACTGGGCC 59.865 57.143 0.00 0.00 0.00 5.80
1896 2591 5.054390 TGTCCAACTTCAAACAAGTGTTC 57.946 39.130 0.00 0.00 37.25 3.18
1919 2614 3.130633 GTTCTTCAATGGTTTTGGTGCC 58.869 45.455 0.00 0.00 0.00 5.01
1935 2633 2.548875 GTGCCAAAATGAACAACAGCA 58.451 42.857 0.00 0.00 0.00 4.41
1967 2665 9.167311 GGCTTTTATGTTATATAGACAGATGGG 57.833 37.037 4.74 0.00 0.00 4.00
2002 2700 7.335422 ACAGAATTTGGTCTCTCACAATGATAC 59.665 37.037 0.00 0.00 0.00 2.24
2049 2747 8.417884 GCTAGAGTTTCTTATATGGACTCTGTT 58.582 37.037 21.99 9.69 44.77 3.16
2050 2748 9.959749 CTAGAGTTTCTTATATGGACTCTGTTC 57.040 37.037 21.99 4.78 44.77 3.18
2051 2749 8.602472 AGAGTTTCTTATATGGACTCTGTTCT 57.398 34.615 17.11 2.81 43.82 3.01
2052 2750 8.474025 AGAGTTTCTTATATGGACTCTGTTCTG 58.526 37.037 17.11 0.00 43.82 3.02
2053 2751 7.044798 AGTTTCTTATATGGACTCTGTTCTGC 58.955 38.462 0.00 0.00 0.00 4.26
2054 2752 6.544928 TTCTTATATGGACTCTGTTCTGCA 57.455 37.500 0.00 0.00 0.00 4.41
2055 2753 6.154203 TCTTATATGGACTCTGTTCTGCAG 57.846 41.667 7.63 7.63 46.34 4.41
2056 2754 2.680312 TATGGACTCTGTTCTGCAGC 57.320 50.000 9.47 0.00 44.66 5.25
2059 2759 1.134128 TGGACTCTGTTCTGCAGCAAA 60.134 47.619 9.47 0.00 44.66 3.68
2071 2771 3.189910 TCTGCAGCAAACATGAAGTCATC 59.810 43.478 9.47 0.00 33.61 2.92
2114 2821 0.527817 CCCTCCGATAAGTGTCGCAC 60.528 60.000 2.28 2.28 40.17 5.34
2127 2835 3.498397 AGTGTCGCACTTTTGAATGTAGG 59.502 43.478 6.67 0.00 42.59 3.18
2128 2836 2.225491 TGTCGCACTTTTGAATGTAGGC 59.775 45.455 0.00 0.00 0.00 3.93
2185 2909 4.853924 TTCCAACAAAGAAATCAGAGCC 57.146 40.909 0.00 0.00 0.00 4.70
2187 2911 3.160269 CCAACAAAGAAATCAGAGCCCT 58.840 45.455 0.00 0.00 0.00 5.19
2197 2921 1.261480 TCAGAGCCCTGTTGAGAGAC 58.739 55.000 0.00 0.00 41.16 3.36
2224 2948 1.515954 CCGTGTGTTCTCCGCCTAT 59.484 57.895 0.00 0.00 0.00 2.57
2245 2972 0.106894 GCCCCTCTCTTTGTATCCCG 59.893 60.000 0.00 0.00 0.00 5.14
2588 3322 4.618920 ACTCCTTGTTGGTACGAAGAAT 57.381 40.909 0.70 0.00 37.07 2.40
2838 3577 6.321945 TGGTCAAGTAAAGTCACTACACACTA 59.678 38.462 0.00 0.00 0.00 2.74
2855 3594 7.346751 ACACACTATTTCCATGTTGTTTTCT 57.653 32.000 0.00 0.00 0.00 2.52
2856 3595 8.458573 ACACACTATTTCCATGTTGTTTTCTA 57.541 30.769 0.00 0.00 0.00 2.10
2863 3602 5.947228 TCCATGTTGTTTTCTAGCTTCAG 57.053 39.130 0.00 0.00 0.00 3.02
2906 3645 2.104792 AGTCTACCAAGAAGCAAGCACA 59.895 45.455 0.00 0.00 32.16 4.57
2956 3695 4.142138 CCCGTGATATATTCCAGGCTACTC 60.142 50.000 0.00 0.00 0.00 2.59
3002 3741 5.126061 GTGGTGTCATCTTTGGAAGCATAAT 59.874 40.000 0.00 0.00 0.00 1.28
3004 3743 7.013655 GTGGTGTCATCTTTGGAAGCATAATAT 59.986 37.037 0.00 0.00 0.00 1.28
3006 3745 8.507249 GGTGTCATCTTTGGAAGCATAATATAC 58.493 37.037 0.00 0.00 0.00 1.47
3033 3772 8.519492 TTGCAAGTCTGTTTCTATTTAATTGC 57.481 30.769 0.00 0.00 39.67 3.56
3087 3826 8.547481 TTCTTCTTTGAATAAAAAGGAGGGTT 57.453 30.769 5.39 0.00 41.40 4.11
3139 3878 8.196103 GGATCTAGTTTCGGATAGTACTGTTTT 58.804 37.037 5.39 0.00 0.00 2.43
3232 4206 5.868258 GTGTTTGCTTAGGAACTAGGTACTC 59.132 44.000 0.00 0.00 44.25 2.59
3234 4208 3.960571 TGCTTAGGAACTAGGTACTCGT 58.039 45.455 0.00 0.00 44.25 4.18
3244 4218 4.396522 ACTAGGTACTCGTTCAGTCTTGT 58.603 43.478 0.00 0.00 41.75 3.16
3267 4241 7.977904 TGTCTTTGTATGATTATGTCAAGCAG 58.022 34.615 0.00 0.00 40.97 4.24
3272 4246 5.987953 TGTATGATTATGTCAAGCAGAGCTC 59.012 40.000 5.27 5.27 40.97 4.09
3276 4250 4.541973 TTATGTCAAGCAGAGCTCTTCA 57.458 40.909 15.27 7.17 38.25 3.02
3310 4284 5.064071 TGCATGTTCTCGTTTTCGCATTATA 59.936 36.000 0.00 0.00 43.73 0.98
3314 4288 7.769719 TGTTCTCGTTTTCGCATTATAAAAC 57.230 32.000 0.00 0.00 43.73 2.43
3409 4383 6.112734 AGATGAATTGCACGGACTATACAAA 58.887 36.000 0.00 0.00 0.00 2.83
3413 4387 6.150307 TGAATTGCACGGACTATACAAATGTT 59.850 34.615 0.00 0.00 0.00 2.71
3488 4462 7.279758 CCTTTCTATGTTGAGTGGAAGAATCTC 59.720 40.741 0.00 0.00 0.00 2.75
3585 4559 7.872113 TGTTTATTTTTGTTGAATTTGCCCT 57.128 28.000 0.00 0.00 0.00 5.19
3615 5895 7.288810 TCTGCATTTAGAAGTTGAAACCATT 57.711 32.000 0.00 0.00 0.00 3.16
3652 5932 5.695851 CTGCAAGTAGTTGAAACCATCTT 57.304 39.130 14.64 0.00 35.46 2.40
3653 5933 6.076981 CTGCAAGTAGTTGAAACCATCTTT 57.923 37.500 14.64 0.00 35.46 2.52
3655 5935 5.359576 TGCAAGTAGTTGAAACCATCTTTGT 59.640 36.000 14.64 0.00 35.46 2.83
3657 5937 6.198966 GCAAGTAGTTGAAACCATCTTTGTTG 59.801 38.462 14.64 0.00 35.46 3.33
3662 5942 5.418840 AGTTGAAACCATCTTTGTTGTGACT 59.581 36.000 0.00 0.00 0.00 3.41
3667 5947 8.307483 TGAAACCATCTTTGTTGTGACTTTTTA 58.693 29.630 0.00 0.00 0.00 1.52
3670 5950 6.701400 ACCATCTTTGTTGTGACTTTTTATGC 59.299 34.615 0.00 0.00 0.00 3.14
3676 5956 7.532682 TTGTTGTGACTTTTTATGCTTTTCC 57.467 32.000 0.00 0.00 0.00 3.13
3678 5958 6.756074 TGTTGTGACTTTTTATGCTTTTCCTG 59.244 34.615 0.00 0.00 0.00 3.86
3689 5969 2.159114 TGCTTTTCCTGTTTTGACCAGC 60.159 45.455 0.00 0.00 0.00 4.85
3696 5976 4.211125 TCCTGTTTTGACCAGCAATGTAA 58.789 39.130 0.00 0.00 36.15 2.41
3704 5984 6.554334 TTGACCAGCAATGTAAAGTACTTC 57.446 37.500 8.95 0.00 0.00 3.01
3707 5987 4.760204 ACCAGCAATGTAAAGTACTTCACC 59.240 41.667 8.95 0.54 0.00 4.02
3709 5989 5.003804 CAGCAATGTAAAGTACTTCACCCT 58.996 41.667 8.95 0.00 0.00 4.34
3718 5998 8.488668 TGTAAAGTACTTCACCCTCTAAAAGTT 58.511 33.333 8.95 0.00 34.09 2.66
3725 6005 5.917545 TCACCCTCTAAAAGTTTTACCCT 57.082 39.130 3.88 0.00 0.00 4.34
3728 6008 4.417854 ACCCTCTAAAAGTTTTACCCTGGT 59.582 41.667 3.88 6.23 0.00 4.00
3731 6011 6.240089 CCCTCTAAAAGTTTTACCCTGGTACT 60.240 42.308 3.88 0.00 0.00 2.73
3748 6028 7.382110 CCTGGTACTATATATAGGCATGATGC 58.618 42.308 21.20 9.33 44.08 3.91
3759 6039 1.269102 GGCATGATGCTGAGTGAATGC 60.269 52.381 17.84 0.00 44.28 3.56
3772 6052 3.201290 AGTGAATGCGCTTTATCAGGAG 58.799 45.455 9.73 0.00 0.00 3.69
3773 6053 1.942657 TGAATGCGCTTTATCAGGAGC 59.057 47.619 9.73 0.00 35.58 4.70
3774 6054 1.942657 GAATGCGCTTTATCAGGAGCA 59.057 47.619 9.73 0.00 41.79 4.26
3776 6056 0.250234 TGCGCTTTATCAGGAGCACT 59.750 50.000 9.73 0.00 38.81 4.40
3784 6101 6.317857 GCTTTATCAGGAGCACTTTGTTTAG 58.682 40.000 0.00 0.00 38.73 1.85
3789 6106 3.058914 CAGGAGCACTTTGTTTAGTTCCG 60.059 47.826 0.00 0.00 32.60 4.30
3791 6108 3.562557 GGAGCACTTTGTTTAGTTCCGAA 59.437 43.478 0.00 0.00 0.00 4.30
3794 6111 4.023193 AGCACTTTGTTTAGTTCCGAATGG 60.023 41.667 0.00 0.00 0.00 3.16
3813 6130 4.705110 TGGGAAACATGAGTCTTCAAGA 57.295 40.909 0.00 0.00 36.78 3.02
3817 6134 5.106396 GGGAAACATGAGTCTTCAAGATGTG 60.106 44.000 0.00 0.00 36.78 3.21
3824 6141 3.152341 AGTCTTCAAGATGTGCCTTTGG 58.848 45.455 0.00 0.00 0.00 3.28
3832 6149 4.098914 AGATGTGCCTTTGGAACTGTTA 57.901 40.909 0.00 0.00 0.00 2.41
3836 6153 3.211045 GTGCCTTTGGAACTGTTAGTCA 58.789 45.455 0.00 0.00 0.00 3.41
3843 6160 7.923878 GCCTTTGGAACTGTTAGTCAAATTTAA 59.076 33.333 12.96 0.00 0.00 1.52
3856 6173 7.081526 AGTCAAATTTAAGCATGTCAGCTAG 57.918 36.000 0.00 0.00 45.89 3.42
3890 6207 0.613012 GGACATGGGAAAGGCTGCTT 60.613 55.000 0.00 0.00 0.00 3.91
3902 6219 3.588336 CTGCTTCAGCCCAAGAGC 58.412 61.111 0.00 0.00 41.18 4.09
3903 6220 1.002379 CTGCTTCAGCCCAAGAGCT 60.002 57.895 0.00 0.00 46.45 4.09
3904 6221 1.002868 TGCTTCAGCCCAAGAGCTC 60.003 57.895 5.27 5.27 42.61 4.09
3905 6222 1.748500 GCTTCAGCCCAAGAGCTCC 60.749 63.158 10.93 0.00 42.61 4.70
3906 6223 1.989620 CTTCAGCCCAAGAGCTCCT 59.010 57.895 10.93 0.00 42.61 3.69
3907 6224 1.198713 CTTCAGCCCAAGAGCTCCTA 58.801 55.000 10.93 0.00 42.61 2.94
3908 6225 1.767681 CTTCAGCCCAAGAGCTCCTAT 59.232 52.381 10.93 0.00 42.61 2.57
3909 6226 1.885049 TCAGCCCAAGAGCTCCTATT 58.115 50.000 10.93 0.00 42.61 1.73
3910 6227 2.200081 TCAGCCCAAGAGCTCCTATTT 58.800 47.619 10.93 0.00 42.61 1.40
3911 6228 3.384168 TCAGCCCAAGAGCTCCTATTTA 58.616 45.455 10.93 0.00 42.61 1.40
3912 6229 3.976654 TCAGCCCAAGAGCTCCTATTTAT 59.023 43.478 10.93 0.00 42.61 1.40
3913 6230 4.413520 TCAGCCCAAGAGCTCCTATTTATT 59.586 41.667 10.93 0.00 42.61 1.40
3914 6231 5.103940 TCAGCCCAAGAGCTCCTATTTATTT 60.104 40.000 10.93 0.00 42.61 1.40
3915 6232 6.101150 TCAGCCCAAGAGCTCCTATTTATTTA 59.899 38.462 10.93 0.00 42.61 1.40
3916 6233 6.205658 CAGCCCAAGAGCTCCTATTTATTTAC 59.794 42.308 10.93 0.00 42.61 2.01
3927 6244 7.363443 GCTCCTATTTATTTACCCAAACAAGCA 60.363 37.037 0.00 0.00 0.00 3.91
3964 6281 3.999663 AGCTACTTTGCAAGTTAGAGCTG 59.000 43.478 17.33 4.05 44.83 4.24
3967 6284 5.049405 GCTACTTTGCAAGTTAGAGCTGAAA 60.049 40.000 16.67 0.00 42.81 2.69
3990 6307 6.076981 ACGATCAGATTTTAAATGGCCATC 57.923 37.500 21.08 5.26 0.00 3.51
4023 6340 8.441608 CAGAATGATTTCATTGATACGATCCTC 58.558 37.037 10.39 0.00 45.72 3.71
4033 6350 2.148446 TACGATCCTCGGGGAAAAGA 57.852 50.000 8.88 0.00 45.59 2.52
4038 6355 3.432326 CGATCCTCGGGGAAAAGAATCTT 60.432 47.826 8.88 0.00 45.78 2.40
4043 6360 6.308566 TCCTCGGGGAAAAGAATCTTAAAAA 58.691 36.000 0.00 0.00 38.93 1.94
4082 6414 7.654022 TTAACTTCTGGTTCAATTCAACCTT 57.346 32.000 12.83 0.62 45.54 3.50
4107 6443 4.576463 GTCTGTTTCCTGGGCATATAGTTG 59.424 45.833 0.00 0.00 0.00 3.16
4114 6450 3.181476 CCTGGGCATATAGTTGCAAAACC 60.181 47.826 0.00 0.00 44.59 3.27
4134 6470 8.530720 CAAAACCACATAATGCACATATTTACG 58.469 33.333 0.00 0.00 0.00 3.18
4138 6474 6.917477 CCACATAATGCACATATTTACGCTTT 59.083 34.615 0.00 0.00 0.00 3.51
4140 6476 9.444534 CACATAATGCACATATTTACGCTTTAA 57.555 29.630 0.00 0.00 30.74 1.52
4142 6478 8.629986 CATAATGCACATATTTACGCTTTAAGC 58.370 33.333 6.92 6.92 38.02 3.09
4174 6522 8.726650 TGATTTTTCGTCATGTTACTTCAATG 57.273 30.769 0.00 0.00 0.00 2.82
4242 6804 8.268850 GTGATTAATCACGGCCATCTATTATT 57.731 34.615 27.93 0.00 46.46 1.40
4279 6841 4.861196 TGTAGCTCAGTAGAGGAGTTCAT 58.139 43.478 0.00 0.00 42.33 2.57
4356 6918 4.518970 TGGAGAACTAAGCAATGGTTTCAC 59.481 41.667 2.10 0.00 32.16 3.18
4360 6922 6.449698 AGAACTAAGCAATGGTTTCACAATG 58.550 36.000 2.10 0.00 32.16 2.82
4454 7016 1.533219 CATGTATGCTGGCCAGGGA 59.467 57.895 33.46 16.31 0.00 4.20
4511 7073 1.055849 TTGTCCAGAGGCTAGTTGCA 58.944 50.000 0.00 0.00 45.15 4.08
4551 7113 4.536765 TGGAGAAAAGCTTTCTGGTTTCT 58.463 39.130 13.10 10.30 44.50 2.52
4564 7126 4.592942 TCTGGTTTCTCCAAATCATCAGG 58.407 43.478 0.00 0.00 46.59 3.86
4700 7262 6.319405 TCCCTTTTTACCACAGTTTTGTACTC 59.681 38.462 0.00 0.00 35.25 2.59
4798 7361 0.807496 GCTGGAGCCACTTGTCAATC 59.193 55.000 0.00 0.00 34.31 2.67
4892 7461 0.457851 CTCAGGTGTCGGGTCATCTC 59.542 60.000 0.00 0.00 0.00 2.75
4900 7498 2.228059 GTCGGGTCATCTCGGAGATAA 58.772 52.381 19.53 3.15 32.12 1.75
4964 7574 1.745489 GGTCTTAGTGGCAAGGGCG 60.745 63.158 0.00 0.00 42.47 6.13
5131 7742 5.234466 ACCAAGAATACTCAGTTTCAGCT 57.766 39.130 0.00 0.00 0.00 4.24
5238 7852 4.054780 ACAGACGAGAAGTGCTTTTGTA 57.945 40.909 0.00 0.00 0.00 2.41
5345 8008 5.290493 TCTTCATAAAGCATATGTCCGGT 57.710 39.130 0.00 0.00 32.18 5.28
5346 8009 5.297547 TCTTCATAAAGCATATGTCCGGTC 58.702 41.667 0.00 0.00 32.18 4.79
5360 8023 3.181453 TGTCCGGTCAGAATGGTGTTTTA 60.181 43.478 0.00 0.00 36.16 1.52
5386 8049 1.909302 AGAATGATGGACTGAACGGGT 59.091 47.619 0.00 0.00 0.00 5.28
5506 8178 3.682292 GAGGCTTACGGCAGGGTGG 62.682 68.421 0.00 0.00 44.01 4.61
5509 8181 2.351276 CTTACGGCAGGGTGGCTT 59.649 61.111 0.00 0.00 41.25 4.35
5520 8192 1.289380 GGTGGCTTCTTCTCGACGT 59.711 57.895 0.00 0.00 0.00 4.34
5521 8193 0.524862 GGTGGCTTCTTCTCGACGTA 59.475 55.000 0.00 0.00 0.00 3.57
5539 8211 5.856126 ACGTAGTACAACACAATTCATGG 57.144 39.130 0.38 0.00 41.94 3.66
5540 8212 4.693566 ACGTAGTACAACACAATTCATGGG 59.306 41.667 0.38 0.00 41.94 4.00
5541 8213 4.094294 CGTAGTACAACACAATTCATGGGG 59.906 45.833 0.38 0.00 36.45 4.96
5542 8214 4.112634 AGTACAACACAATTCATGGGGT 57.887 40.909 0.00 0.00 36.45 4.95
5543 8215 4.479158 AGTACAACACAATTCATGGGGTT 58.521 39.130 0.00 0.00 36.45 4.11
5544 8216 4.522789 AGTACAACACAATTCATGGGGTTC 59.477 41.667 0.00 0.00 36.45 3.62
5545 8217 2.295909 ACAACACAATTCATGGGGTTCG 59.704 45.455 0.00 0.00 36.45 3.95
5546 8218 2.286365 ACACAATTCATGGGGTTCGT 57.714 45.000 0.00 0.00 36.45 3.85
5547 8219 2.159382 ACACAATTCATGGGGTTCGTC 58.841 47.619 0.00 0.00 36.45 4.20
5548 8220 1.130373 CACAATTCATGGGGTTCGTCG 59.870 52.381 0.00 0.00 0.00 5.12
5549 8221 0.098728 CAATTCATGGGGTTCGTCGC 59.901 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.889128 TTTCAAAATTCTGAAAAGTGGAAATCT 57.111 25.926 4.44 0.00 41.25 2.40
17 18 4.642885 AGTTCACCGGTTTCAAAATTCTGA 59.357 37.500 2.97 0.00 0.00 3.27
40 41 3.119673 ACTTCACGCACAAATCAACACAA 60.120 39.130 0.00 0.00 0.00 3.33
59 60 1.937899 GTGGTGTTGCGAGTTACACTT 59.062 47.619 0.00 0.00 43.19 3.16
116 122 1.270094 CGTGTTGAGCCACCTGAGTTA 60.270 52.381 0.00 0.00 31.47 2.24
185 195 9.567776 TTCCACCAATAAATATACTGGTATGTG 57.432 33.333 3.76 1.55 40.23 3.21
228 238 2.130193 TCAATCTGGCTAGGATTGGCT 58.870 47.619 19.63 0.00 45.72 4.75
248 258 5.744300 GCTCAGTAATCAGGGACAATGCTAT 60.744 44.000 0.00 0.00 0.00 2.97
254 264 3.264193 ACATGCTCAGTAATCAGGGACAA 59.736 43.478 0.00 0.00 0.00 3.18
255 265 2.840038 ACATGCTCAGTAATCAGGGACA 59.160 45.455 0.00 0.00 0.00 4.02
257 267 3.643320 CCTACATGCTCAGTAATCAGGGA 59.357 47.826 0.00 0.00 0.00 4.20
260 270 3.055591 CGCCTACATGCTCAGTAATCAG 58.944 50.000 0.00 0.00 0.00 2.90
261 271 2.803133 GCGCCTACATGCTCAGTAATCA 60.803 50.000 0.00 0.00 0.00 2.57
263 273 1.138859 TGCGCCTACATGCTCAGTAAT 59.861 47.619 4.18 0.00 0.00 1.89
264 274 0.534873 TGCGCCTACATGCTCAGTAA 59.465 50.000 4.18 0.00 0.00 2.24
265 275 0.534873 TTGCGCCTACATGCTCAGTA 59.465 50.000 4.18 0.00 0.00 2.74
266 276 0.742281 CTTGCGCCTACATGCTCAGT 60.742 55.000 4.18 0.00 0.00 3.41
267 277 2.012237 CTTGCGCCTACATGCTCAG 58.988 57.895 4.18 0.00 0.00 3.35
268 278 2.108514 GCTTGCGCCTACATGCTCA 61.109 57.895 4.18 0.00 37.64 4.26
269 279 2.108514 TGCTTGCGCCTACATGCTC 61.109 57.895 4.18 0.00 40.39 4.26
270 280 2.046023 TGCTTGCGCCTACATGCT 60.046 55.556 4.18 0.00 40.39 3.79
302 312 3.636764 ACACCCTCCATCTTTGTGAAAAC 59.363 43.478 0.00 0.00 0.00 2.43
306 316 3.593442 AAACACCCTCCATCTTTGTGA 57.407 42.857 0.00 0.00 0.00 3.58
309 319 6.588719 TTATGAAAACACCCTCCATCTTTG 57.411 37.500 0.00 0.00 0.00 2.77
350 363 2.200170 GACTGCGTCATGGCAAACCC 62.200 60.000 0.00 0.00 43.39 4.11
354 367 0.522626 CATTGACTGCGTCATGGCAA 59.477 50.000 11.23 0.00 42.40 4.52
360 373 2.316867 CGCCACATTGACTGCGTCA 61.317 57.895 7.20 7.20 41.09 4.35
366 379 0.244450 CAATTGGCGCCACATTGACT 59.756 50.000 35.65 14.21 32.01 3.41
368 381 0.243365 GACAATTGGCGCCACATTGA 59.757 50.000 40.13 27.47 33.26 2.57
371 384 2.699768 CGGACAATTGGCGCCACAT 61.700 57.895 32.95 22.36 0.00 3.21
372 385 3.361158 CGGACAATTGGCGCCACA 61.361 61.111 32.95 21.02 0.00 4.17
382 395 2.228822 GAGCCAATCACAAACGGACAAT 59.771 45.455 0.00 0.00 0.00 2.71
388 401 1.197721 GTCCAGAGCCAATCACAAACG 59.802 52.381 0.00 0.00 0.00 3.60
389 402 2.508526 AGTCCAGAGCCAATCACAAAC 58.491 47.619 0.00 0.00 0.00 2.93
403 416 7.066163 TGCAATGTATGTGAAGATTTAGTCCAG 59.934 37.037 0.00 0.00 0.00 3.86
450 463 7.360861 GGTTTAGTCCATAAATTTGCAAAAGGC 60.361 37.037 17.19 9.27 38.14 4.35
485 498 3.561143 ACAGACCCACAAACTTGCAATA 58.439 40.909 0.00 0.00 0.00 1.90
513 526 6.311200 GCTCGTTAATTGAAATGAAGGCAAAT 59.689 34.615 0.00 0.00 0.00 2.32
516 529 4.458989 AGCTCGTTAATTGAAATGAAGGCA 59.541 37.500 0.00 0.00 0.00 4.75
517 530 4.986622 AGCTCGTTAATTGAAATGAAGGC 58.013 39.130 0.00 0.00 0.00 4.35
562 575 0.384309 TGAACGAGTTGAGCTGACGT 59.616 50.000 0.00 0.00 38.81 4.34
572 585 5.277154 CGTAAACAATCCAGTTGAACGAGTT 60.277 40.000 8.41 0.00 40.68 3.01
585 598 8.476925 GTTTCAAATTGAACTCGTAAACAATCC 58.523 33.333 8.06 0.00 35.89 3.01
593 607 6.001460 AGATGGGTTTCAAATTGAACTCGTA 58.999 36.000 8.06 0.00 35.89 3.43
599 613 5.070001 AGTCGAGATGGGTTTCAAATTGAA 58.930 37.500 4.03 4.03 34.03 2.69
604 618 3.762407 TGAGTCGAGATGGGTTTCAAA 57.238 42.857 0.00 0.00 0.00 2.69
663 677 5.306160 TCCTAGTAGTAGCTGTTTGGTTGTT 59.694 40.000 0.00 0.00 0.00 2.83
664 678 4.836736 TCCTAGTAGTAGCTGTTTGGTTGT 59.163 41.667 0.00 0.00 0.00 3.32
674 1293 4.345547 GCTGGGAATTTCCTAGTAGTAGCT 59.654 45.833 24.64 0.00 45.79 3.32
675 1294 4.503469 GGCTGGGAATTTCCTAGTAGTAGC 60.503 50.000 24.64 13.28 45.79 3.58
676 1295 4.654262 TGGCTGGGAATTTCCTAGTAGTAG 59.346 45.833 24.64 5.19 45.79 2.57
677 1296 4.407945 GTGGCTGGGAATTTCCTAGTAGTA 59.592 45.833 24.64 10.17 45.79 1.82
678 1297 3.200165 GTGGCTGGGAATTTCCTAGTAGT 59.800 47.826 24.64 0.00 45.79 2.73
681 1300 1.065418 CGTGGCTGGGAATTTCCTAGT 60.065 52.381 24.64 0.00 45.79 2.57
682 1301 1.668419 CGTGGCTGGGAATTTCCTAG 58.332 55.000 21.19 21.19 46.67 3.02
683 1302 0.393808 GCGTGGCTGGGAATTTCCTA 60.394 55.000 14.95 8.34 36.57 2.94
684 1303 1.678970 GCGTGGCTGGGAATTTCCT 60.679 57.895 14.95 0.00 36.57 3.36
685 1304 1.657751 GAGCGTGGCTGGGAATTTCC 61.658 60.000 6.91 6.91 39.88 3.13
686 1305 1.657751 GGAGCGTGGCTGGGAATTTC 61.658 60.000 0.00 0.00 39.88 2.17
688 1307 2.044946 GGAGCGTGGCTGGGAATT 60.045 61.111 0.00 0.00 39.88 2.17
689 1308 3.329889 TGGAGCGTGGCTGGGAAT 61.330 61.111 0.00 0.00 39.88 3.01
690 1309 4.020617 CTGGAGCGTGGCTGGGAA 62.021 66.667 0.00 0.00 39.88 3.97
692 1311 4.767255 GTCTGGAGCGTGGCTGGG 62.767 72.222 0.00 0.00 39.88 4.45
693 1312 4.767255 GGTCTGGAGCGTGGCTGG 62.767 72.222 0.00 0.00 39.88 4.85
694 1313 3.947132 CTGGTCTGGAGCGTGGCTG 62.947 68.421 0.00 0.00 39.88 4.85
695 1314 3.699894 CTGGTCTGGAGCGTGGCT 61.700 66.667 0.00 0.00 43.88 4.75
696 1315 4.767255 CCTGGTCTGGAGCGTGGC 62.767 72.222 0.00 0.00 0.00 5.01
697 1316 4.767255 GCCTGGTCTGGAGCGTGG 62.767 72.222 0.00 7.08 0.00 4.94
698 1317 3.535629 TTGCCTGGTCTGGAGCGTG 62.536 63.158 0.00 0.00 0.00 5.34
699 1318 2.337879 TTTTGCCTGGTCTGGAGCGT 62.338 55.000 0.00 0.00 0.00 5.07
700 1319 1.172180 TTTTTGCCTGGTCTGGAGCG 61.172 55.000 0.00 0.00 0.00 5.03
701 1320 2.732289 TTTTTGCCTGGTCTGGAGC 58.268 52.632 0.00 0.00 0.00 4.70
717 1336 1.667212 GGTTCGTGACCTCGTGTTTTT 59.333 47.619 3.90 0.00 45.55 1.94
718 1337 1.292992 GGTTCGTGACCTCGTGTTTT 58.707 50.000 3.90 0.00 45.55 2.43
719 1338 2.981997 GGTTCGTGACCTCGTGTTT 58.018 52.632 3.90 0.00 45.55 2.83
720 1339 4.744316 GGTTCGTGACCTCGTGTT 57.256 55.556 3.90 0.00 45.55 3.32
728 1347 2.991866 GGCTACTAGTTTGGTTCGTGAC 59.008 50.000 0.00 0.00 0.00 3.67
729 1348 2.028748 GGGCTACTAGTTTGGTTCGTGA 60.029 50.000 0.00 0.00 0.00 4.35
730 1349 2.028385 AGGGCTACTAGTTTGGTTCGTG 60.028 50.000 0.00 0.00 0.00 4.35
731 1350 2.254508 AGGGCTACTAGTTTGGTTCGT 58.745 47.619 0.00 0.00 0.00 3.85
732 1351 3.329929 AAGGGCTACTAGTTTGGTTCG 57.670 47.619 0.00 0.00 0.00 3.95
733 1352 6.318144 GGAAATAAGGGCTACTAGTTTGGTTC 59.682 42.308 0.00 0.00 0.00 3.62
734 1353 6.185511 GGAAATAAGGGCTACTAGTTTGGTT 58.814 40.000 0.00 0.00 0.00 3.67
735 1354 5.252164 TGGAAATAAGGGCTACTAGTTTGGT 59.748 40.000 0.00 0.00 0.00 3.67
736 1355 5.751586 TGGAAATAAGGGCTACTAGTTTGG 58.248 41.667 0.00 0.00 0.00 3.28
737 1356 5.297029 GCTGGAAATAAGGGCTACTAGTTTG 59.703 44.000 0.00 0.00 0.00 2.93
738 1357 5.437946 GCTGGAAATAAGGGCTACTAGTTT 58.562 41.667 0.00 0.00 0.00 2.66
739 1358 4.141459 GGCTGGAAATAAGGGCTACTAGTT 60.141 45.833 0.00 0.00 0.00 2.24
740 1359 3.391626 GGCTGGAAATAAGGGCTACTAGT 59.608 47.826 0.00 0.00 0.00 2.57
741 1360 3.244596 GGGCTGGAAATAAGGGCTACTAG 60.245 52.174 0.00 0.00 0.00 2.57
742 1361 2.709397 GGGCTGGAAATAAGGGCTACTA 59.291 50.000 0.00 0.00 0.00 1.82
743 1362 1.495148 GGGCTGGAAATAAGGGCTACT 59.505 52.381 0.00 0.00 0.00 2.57
744 1363 1.495148 AGGGCTGGAAATAAGGGCTAC 59.505 52.381 0.00 0.00 0.00 3.58
745 1364 1.494721 CAGGGCTGGAAATAAGGGCTA 59.505 52.381 0.00 0.00 0.00 3.93
746 1365 0.259938 CAGGGCTGGAAATAAGGGCT 59.740 55.000 0.00 0.00 0.00 5.19
747 1366 1.395045 GCAGGGCTGGAAATAAGGGC 61.395 60.000 0.00 0.00 0.00 5.19
748 1367 0.259938 AGCAGGGCTGGAAATAAGGG 59.740 55.000 0.00 0.00 37.57 3.95
749 1368 2.149973 AAGCAGGGCTGGAAATAAGG 57.850 50.000 0.00 0.00 39.62 2.69
750 1369 3.823304 GGATAAGCAGGGCTGGAAATAAG 59.177 47.826 0.00 0.00 39.62 1.73
757 1376 0.251077 GGATGGATAAGCAGGGCTGG 60.251 60.000 0.00 0.00 39.62 4.85
765 1384 1.593006 CAACGTGACGGATGGATAAGC 59.407 52.381 10.66 0.00 0.00 3.09
778 1397 0.107800 TGGTCGTTTTCCCAACGTGA 60.108 50.000 6.98 0.00 43.47 4.35
781 1400 1.281656 GCTGGTCGTTTTCCCAACG 59.718 57.895 0.63 0.63 44.29 4.10
784 1403 2.281208 CGGCTGGTCGTTTTCCCA 60.281 61.111 0.00 0.00 0.00 4.37
786 1405 3.733960 GGCGGCTGGTCGTTTTCC 61.734 66.667 0.00 0.00 0.00 3.13
933 1568 1.878656 GATCCTGATAGTCGCGGGGG 61.879 65.000 6.13 0.00 32.48 5.40
934 1569 1.587054 GATCCTGATAGTCGCGGGG 59.413 63.158 6.13 0.00 32.48 5.73
960 1595 1.319374 CGCAGTTAACGACGGTGTATG 59.681 52.381 13.46 0.00 0.00 2.39
970 1605 0.989890 GTCTAGTGCCGCAGTTAACG 59.010 55.000 5.91 0.00 0.00 3.18
971 1606 2.365408 AGTCTAGTGCCGCAGTTAAC 57.635 50.000 5.91 5.39 0.00 2.01
972 1607 2.426024 CCTAGTCTAGTGCCGCAGTTAA 59.574 50.000 5.91 0.00 0.00 2.01
973 1608 2.022195 CCTAGTCTAGTGCCGCAGTTA 58.978 52.381 5.91 0.00 0.00 2.24
981 1616 5.119694 CCCATTTTCTTCCTAGTCTAGTGC 58.880 45.833 6.15 0.00 0.00 4.40
1131 1766 0.115745 AGGGAAGTCGAGGTACCCAA 59.884 55.000 8.74 0.00 42.62 4.12
1147 1782 5.367945 TGTAAATAGCAAAGAGGGTAGGG 57.632 43.478 0.00 0.00 0.00 3.53
1195 1838 2.363361 CAGGTAGGGGACTCCGGT 59.637 66.667 0.00 0.00 43.67 5.28
1202 1845 2.688666 CTGCAGGCAGGTAGGGGA 60.689 66.667 13.39 0.00 40.17 4.81
1258 1901 1.038130 GCTTCTCGGTCAGGCTCCTA 61.038 60.000 0.00 0.00 0.00 2.94
1352 1995 0.537143 CCCCAGTACACTTGCAGCAA 60.537 55.000 7.81 7.81 0.00 3.91
1453 2096 2.023673 TCATCCATTCCGGTGAAATGC 58.976 47.619 0.00 0.00 33.32 3.56
1482 2125 0.793861 TTAAGTAAGCACAAGCCGCG 59.206 50.000 0.00 0.00 43.56 6.46
1508 2169 9.174166 ACAAGTGTTTAAGTACAGTTCAGAAAT 57.826 29.630 0.00 0.00 39.12 2.17
1572 2239 5.116882 GGAACGAACATAGACTAGGCAAAT 58.883 41.667 0.00 0.00 0.00 2.32
1636 2307 4.298626 TGGGCATTATTAGTCAGGAGTCT 58.701 43.478 0.00 0.00 0.00 3.24
1652 2343 8.682936 CTAATTCTGTCTAATTAGTTGGGCAT 57.317 34.615 12.19 0.00 41.46 4.40
1834 2529 4.092529 CAGTCAACGTACTCTAGCTAACGA 59.907 45.833 19.60 2.91 38.64 3.85
1896 2591 3.803778 GCACCAAAACCATTGAAGAACAG 59.196 43.478 0.00 0.00 0.00 3.16
1919 2614 4.449743 CCCATTCTGCTGTTGTTCATTTTG 59.550 41.667 0.00 0.00 0.00 2.44
2002 2700 3.891049 CCCCTTCCATTCTTAGTCCAAG 58.109 50.000 0.00 0.00 35.38 3.61
2049 2747 2.574450 TGACTTCATGTTTGCTGCAGA 58.426 42.857 20.43 0.00 0.00 4.26
2050 2748 3.057806 TGATGACTTCATGTTTGCTGCAG 60.058 43.478 10.11 10.11 36.57 4.41
2051 2749 2.885894 TGATGACTTCATGTTTGCTGCA 59.114 40.909 0.00 0.00 36.57 4.41
2052 2750 3.564235 TGATGACTTCATGTTTGCTGC 57.436 42.857 0.00 0.00 36.57 5.25
2053 2751 7.859377 GGTATATTGATGACTTCATGTTTGCTG 59.141 37.037 0.00 0.00 36.57 4.41
2054 2752 7.776969 AGGTATATTGATGACTTCATGTTTGCT 59.223 33.333 0.00 0.00 36.57 3.91
2055 2753 7.934457 AGGTATATTGATGACTTCATGTTTGC 58.066 34.615 0.00 0.00 36.57 3.68
2094 2794 1.067582 GCGACACTTATCGGAGGGG 59.932 63.158 0.00 0.00 42.49 4.79
2185 2909 0.389166 GGCACGAGTCTCTCAACAGG 60.389 60.000 0.00 0.00 0.00 4.00
2187 2911 1.666011 GGGCACGAGTCTCTCAACA 59.334 57.895 0.00 0.00 0.00 3.33
2197 2921 4.619227 AACACACGGGGGCACGAG 62.619 66.667 7.82 2.49 37.61 4.18
2224 2948 1.213296 GGATACAAAGAGAGGGGCCA 58.787 55.000 4.39 0.00 0.00 5.36
2245 2972 6.660887 TCTGATTTCTTTGTTTTTGGTTGC 57.339 33.333 0.00 0.00 0.00 4.17
2468 3195 4.043596 AGCAGTCCTAGGAAATTGGAGAT 58.956 43.478 14.65 0.00 33.12 2.75
2710 3449 1.663695 ACCAACCTGTTCAAGTCACG 58.336 50.000 0.00 0.00 0.00 4.35
2763 3502 6.986817 CCTTGAACGATAATTCCATCTACACT 59.013 38.462 0.00 0.00 0.00 3.55
2838 3577 7.014615 ACTGAAGCTAGAAAACAACATGGAAAT 59.985 33.333 0.00 0.00 0.00 2.17
2855 3594 7.452880 ACAGCATTTCAAAATACTGAAGCTA 57.547 32.000 18.23 0.00 40.59 3.32
2856 3595 6.336842 ACAGCATTTCAAAATACTGAAGCT 57.663 33.333 18.23 3.53 40.59 3.74
2863 3602 6.875926 CTGCCTAACAGCATTTCAAAATAC 57.124 37.500 0.00 0.00 43.09 1.89
2906 3645 6.377996 ACATGGTGTAGATTGTTATTGCATGT 59.622 34.615 0.00 0.00 0.00 3.21
2917 3656 1.016627 CGGGCACATGGTGTAGATTG 58.983 55.000 0.00 0.00 35.75 2.67
2971 3710 3.636300 CCAAAGATGACACCACAAAAGGA 59.364 43.478 0.00 0.00 0.00 3.36
3004 3743 8.911918 TTAAATAGAAACAGACTTGCAAGGTA 57.088 30.769 29.18 8.52 0.00 3.08
3006 3745 9.132521 CAATTAAATAGAAACAGACTTGCAAGG 57.867 33.333 29.18 14.74 0.00 3.61
3033 3772 2.517959 TGAGTTGAAAGCCCATGAAGG 58.482 47.619 0.00 0.00 37.03 3.46
3049 3788 6.515272 TCAAAGAAGAAAAGCTGTTTGAGT 57.485 33.333 0.00 0.00 36.33 3.41
3087 3826 3.047280 CGGCAGCAACGGTAGCAA 61.047 61.111 0.00 0.00 0.00 3.91
3139 3878 2.125310 CACCAGCGGCGATAACCA 60.125 61.111 12.98 0.00 0.00 3.67
3232 4206 6.712241 ATCATACAAAGACAAGACTGAACG 57.288 37.500 0.00 0.00 0.00 3.95
3234 4208 9.725019 ACATAATCATACAAAGACAAGACTGAA 57.275 29.630 0.00 0.00 0.00 3.02
3244 4218 7.011763 GCTCTGCTTGACATAATCATACAAAGA 59.988 37.037 0.00 0.00 37.11 2.52
3267 4241 8.545229 ACATGCATAAGTATAATGAAGAGCTC 57.455 34.615 5.27 5.27 0.00 4.09
3272 4246 8.982685 ACGAGAACATGCATAAGTATAATGAAG 58.017 33.333 0.00 0.00 0.00 3.02
3296 4270 8.883789 TTAAGGAGTTTTATAATGCGAAAACG 57.116 30.769 4.98 0.00 45.81 3.60
3310 4284 7.418337 ACAAACCTGAACATTAAGGAGTTTT 57.582 32.000 1.67 0.00 37.01 2.43
3314 4288 5.123979 GGCTACAAACCTGAACATTAAGGAG 59.876 44.000 1.67 0.00 37.01 3.69
3323 4297 0.872388 CGGTGGCTACAAACCTGAAC 59.128 55.000 1.52 0.00 34.06 3.18
3372 4346 6.195983 GTGCAATTCATCTCGATTAGCTTTTG 59.804 38.462 0.00 0.00 0.00 2.44
3383 4357 1.645034 AGTCCGTGCAATTCATCTCG 58.355 50.000 0.00 0.00 0.00 4.04
3409 4383 0.036765 TCTAGCACGCCCGAAAACAT 60.037 50.000 0.00 0.00 0.00 2.71
3413 4387 1.153449 CCATCTAGCACGCCCGAAA 60.153 57.895 0.00 0.00 0.00 3.46
3488 4462 3.920231 TCCTCTGTTTCATGATCTGGG 57.080 47.619 0.00 0.00 0.00 4.45
3527 4501 0.949397 CGCCATGGATGACAGAATGG 59.051 55.000 18.40 8.72 43.62 3.16
3545 4519 8.973835 AAAATAAACAACCAATACATACCACG 57.026 30.769 0.00 0.00 0.00 4.94
3558 4532 7.433719 GGGCAAATTCAACAAAAATAAACAACC 59.566 33.333 0.00 0.00 0.00 3.77
3581 4555 3.813443 TCTAAATGCAGAATGAGAGGGC 58.187 45.455 0.00 0.00 39.69 5.19
3585 4559 7.984422 TTCAACTTCTAAATGCAGAATGAGA 57.016 32.000 0.00 0.00 39.69 3.27
3619 5899 7.151999 TCAACTACTTGCAGTCAAAAGAAAA 57.848 32.000 0.00 0.00 0.00 2.29
3620 5900 6.751514 TCAACTACTTGCAGTCAAAAGAAA 57.248 33.333 0.00 0.00 0.00 2.52
3621 5901 6.751514 TTCAACTACTTGCAGTCAAAAGAA 57.248 33.333 0.00 0.00 0.00 2.52
3622 5902 6.404293 GGTTTCAACTACTTGCAGTCAAAAGA 60.404 38.462 0.00 0.00 0.00 2.52
3623 5903 5.743872 GGTTTCAACTACTTGCAGTCAAAAG 59.256 40.000 0.00 0.00 0.00 2.27
3624 5904 5.184096 TGGTTTCAACTACTTGCAGTCAAAA 59.816 36.000 0.00 0.00 0.00 2.44
3625 5905 4.702612 TGGTTTCAACTACTTGCAGTCAAA 59.297 37.500 0.00 0.00 0.00 2.69
3626 5906 4.265893 TGGTTTCAACTACTTGCAGTCAA 58.734 39.130 0.00 0.00 0.00 3.18
3627 5907 3.879998 TGGTTTCAACTACTTGCAGTCA 58.120 40.909 0.00 0.00 0.00 3.41
3628 5908 4.757149 AGATGGTTTCAACTACTTGCAGTC 59.243 41.667 0.00 0.00 0.00 3.51
3629 5909 4.718961 AGATGGTTTCAACTACTTGCAGT 58.281 39.130 0.00 0.00 0.00 4.40
3630 5910 5.695851 AAGATGGTTTCAACTACTTGCAG 57.304 39.130 0.00 0.00 0.00 4.41
3631 5911 5.359576 ACAAAGATGGTTTCAACTACTTGCA 59.640 36.000 0.00 0.00 0.00 4.08
3632 5912 5.831997 ACAAAGATGGTTTCAACTACTTGC 58.168 37.500 0.00 0.00 0.00 4.01
3633 5913 7.220683 CACAACAAAGATGGTTTCAACTACTTG 59.779 37.037 0.00 0.00 0.00 3.16
3634 5914 7.122055 TCACAACAAAGATGGTTTCAACTACTT 59.878 33.333 0.00 0.00 0.00 2.24
3635 5915 6.601613 TCACAACAAAGATGGTTTCAACTACT 59.398 34.615 0.00 0.00 0.00 2.57
3636 5916 6.691388 GTCACAACAAAGATGGTTTCAACTAC 59.309 38.462 0.00 0.00 0.00 2.73
3637 5917 6.601613 AGTCACAACAAAGATGGTTTCAACTA 59.398 34.615 0.00 0.00 0.00 2.24
3638 5918 5.418840 AGTCACAACAAAGATGGTTTCAACT 59.581 36.000 0.00 0.00 0.00 3.16
3639 5919 5.650543 AGTCACAACAAAGATGGTTTCAAC 58.349 37.500 0.00 0.00 0.00 3.18
3640 5920 5.913137 AGTCACAACAAAGATGGTTTCAA 57.087 34.783 0.00 0.00 0.00 2.69
3641 5921 5.913137 AAGTCACAACAAAGATGGTTTCA 57.087 34.783 0.00 0.00 0.00 2.69
3642 5922 7.595311 AAAAAGTCACAACAAAGATGGTTTC 57.405 32.000 0.00 0.00 0.00 2.78
3643 5923 9.097257 CATAAAAAGTCACAACAAAGATGGTTT 57.903 29.630 0.00 0.00 0.00 3.27
3644 5924 7.224557 GCATAAAAAGTCACAACAAAGATGGTT 59.775 33.333 0.00 0.00 0.00 3.67
3645 5925 6.701400 GCATAAAAAGTCACAACAAAGATGGT 59.299 34.615 0.00 0.00 0.00 3.55
3646 5926 6.925165 AGCATAAAAAGTCACAACAAAGATGG 59.075 34.615 0.00 0.00 0.00 3.51
3647 5927 7.935338 AGCATAAAAAGTCACAACAAAGATG 57.065 32.000 0.00 0.00 0.00 2.90
3648 5928 8.947055 AAAGCATAAAAAGTCACAACAAAGAT 57.053 26.923 0.00 0.00 0.00 2.40
3649 5929 8.770438 AAAAGCATAAAAAGTCACAACAAAGA 57.230 26.923 0.00 0.00 0.00 2.52
3650 5930 8.116136 GGAAAAGCATAAAAAGTCACAACAAAG 58.884 33.333 0.00 0.00 0.00 2.77
3651 5931 7.821846 AGGAAAAGCATAAAAAGTCACAACAAA 59.178 29.630 0.00 0.00 0.00 2.83
3652 5932 7.277539 CAGGAAAAGCATAAAAAGTCACAACAA 59.722 33.333 0.00 0.00 0.00 2.83
3653 5933 6.756074 CAGGAAAAGCATAAAAAGTCACAACA 59.244 34.615 0.00 0.00 0.00 3.33
3655 5935 6.872920 ACAGGAAAAGCATAAAAAGTCACAA 58.127 32.000 0.00 0.00 0.00 3.33
3657 5937 7.770801 AAACAGGAAAAGCATAAAAAGTCAC 57.229 32.000 0.00 0.00 0.00 3.67
3662 5942 7.106239 TGGTCAAAACAGGAAAAGCATAAAAA 58.894 30.769 0.00 0.00 0.00 1.94
3667 5947 3.493176 GCTGGTCAAAACAGGAAAAGCAT 60.493 43.478 0.00 0.00 36.48 3.79
3670 5950 3.799281 TGCTGGTCAAAACAGGAAAAG 57.201 42.857 0.00 0.00 36.48 2.27
3676 5956 5.591099 ACTTTACATTGCTGGTCAAAACAG 58.409 37.500 0.00 0.00 38.34 3.16
3678 5958 6.735130 AGTACTTTACATTGCTGGTCAAAAC 58.265 36.000 0.00 0.00 38.34 2.43
3689 5969 8.842358 TTTAGAGGGTGAAGTACTTTACATTG 57.158 34.615 26.26 0.00 31.56 2.82
3696 5976 9.334947 GTAAAACTTTTAGAGGGTGAAGTACTT 57.665 33.333 8.13 8.13 32.44 2.24
3704 5984 4.765339 CCAGGGTAAAACTTTTAGAGGGTG 59.235 45.833 0.00 0.00 0.00 4.61
3707 5987 6.776744 AGTACCAGGGTAAAACTTTTAGAGG 58.223 40.000 0.00 0.00 31.86 3.69
3718 5998 9.209048 CATGCCTATATATAGTACCAGGGTAAA 57.791 37.037 16.78 0.00 31.86 2.01
3725 6005 7.784550 TCAGCATCATGCCTATATATAGTACCA 59.215 37.037 16.78 11.52 46.52 3.25
3728 6008 8.854117 CACTCAGCATCATGCCTATATATAGTA 58.146 37.037 16.78 7.50 46.52 1.82
3731 6011 7.902920 TCACTCAGCATCATGCCTATATATA 57.097 36.000 5.84 0.00 46.52 0.86
3748 6028 3.002042 CCTGATAAAGCGCATTCACTCAG 59.998 47.826 11.47 16.10 0.00 3.35
3759 6039 2.744202 ACAAAGTGCTCCTGATAAAGCG 59.256 45.455 0.00 0.00 41.51 4.68
3772 6052 4.226761 CCATTCGGAACTAAACAAAGTGC 58.773 43.478 0.00 0.00 0.00 4.40
3773 6053 4.517453 TCCCATTCGGAACTAAACAAAGTG 59.483 41.667 0.00 0.00 37.88 3.16
3774 6054 4.721132 TCCCATTCGGAACTAAACAAAGT 58.279 39.130 0.00 0.00 37.88 2.66
3789 6106 5.707298 TCTTGAAGACTCATGTTTCCCATTC 59.293 40.000 0.00 0.00 0.00 2.67
3791 6108 5.246981 TCTTGAAGACTCATGTTTCCCAT 57.753 39.130 0.00 0.00 0.00 4.00
3794 6111 5.618640 GCACATCTTGAAGACTCATGTTTCC 60.619 44.000 0.00 0.00 0.00 3.13
3813 6130 3.821033 GACTAACAGTTCCAAAGGCACAT 59.179 43.478 0.00 0.00 0.00 3.21
3817 6134 4.911514 TTTGACTAACAGTTCCAAAGGC 57.088 40.909 0.00 0.00 0.00 4.35
3824 6141 9.118236 GACATGCTTAAATTTGACTAACAGTTC 57.882 33.333 0.00 0.00 0.00 3.01
3832 6149 5.972107 AGCTGACATGCTTAAATTTGACT 57.028 34.783 0.00 0.00 40.93 3.41
3836 6153 6.521151 AAGCTAGCTGACATGCTTAAATTT 57.479 33.333 20.16 0.00 42.94 1.82
3843 6160 2.768527 TCCTAAAGCTAGCTGACATGCT 59.231 45.455 20.16 0.00 46.11 3.79
3876 6193 4.828409 CTGAAGCAGCCTTTCCCA 57.172 55.556 0.00 0.00 0.00 4.37
3890 6207 1.885049 AATAGGAGCTCTTGGGCTGA 58.115 50.000 14.64 0.00 43.20 4.26
3894 6211 6.004574 GGGTAAATAAATAGGAGCTCTTGGG 58.995 44.000 14.64 0.00 0.00 4.12
3899 6216 7.875327 TGTTTGGGTAAATAAATAGGAGCTC 57.125 36.000 4.71 4.71 0.00 4.09
3900 6217 7.147897 GCTTGTTTGGGTAAATAAATAGGAGCT 60.148 37.037 0.00 0.00 0.00 4.09
3901 6218 6.978659 GCTTGTTTGGGTAAATAAATAGGAGC 59.021 38.462 0.00 0.00 0.00 4.70
3902 6219 7.973944 GTGCTTGTTTGGGTAAATAAATAGGAG 59.026 37.037 0.00 0.00 0.00 3.69
3903 6220 7.093684 GGTGCTTGTTTGGGTAAATAAATAGGA 60.094 37.037 0.00 0.00 0.00 2.94
3904 6221 7.039270 GGTGCTTGTTTGGGTAAATAAATAGG 58.961 38.462 0.00 0.00 0.00 2.57
3905 6222 7.544217 GTGGTGCTTGTTTGGGTAAATAAATAG 59.456 37.037 0.00 0.00 0.00 1.73
3906 6223 7.015292 TGTGGTGCTTGTTTGGGTAAATAAATA 59.985 33.333 0.00 0.00 0.00 1.40
3907 6224 6.183361 TGTGGTGCTTGTTTGGGTAAATAAAT 60.183 34.615 0.00 0.00 0.00 1.40
3908 6225 5.128827 TGTGGTGCTTGTTTGGGTAAATAAA 59.871 36.000 0.00 0.00 0.00 1.40
3909 6226 4.649674 TGTGGTGCTTGTTTGGGTAAATAA 59.350 37.500 0.00 0.00 0.00 1.40
3910 6227 4.215908 TGTGGTGCTTGTTTGGGTAAATA 58.784 39.130 0.00 0.00 0.00 1.40
3911 6228 3.034635 TGTGGTGCTTGTTTGGGTAAAT 58.965 40.909 0.00 0.00 0.00 1.40
3912 6229 2.457598 TGTGGTGCTTGTTTGGGTAAA 58.542 42.857 0.00 0.00 0.00 2.01
3913 6230 2.145397 TGTGGTGCTTGTTTGGGTAA 57.855 45.000 0.00 0.00 0.00 2.85
3914 6231 1.751924 GTTGTGGTGCTTGTTTGGGTA 59.248 47.619 0.00 0.00 0.00 3.69
3915 6232 0.534873 GTTGTGGTGCTTGTTTGGGT 59.465 50.000 0.00 0.00 0.00 4.51
3916 6233 0.823460 AGTTGTGGTGCTTGTTTGGG 59.177 50.000 0.00 0.00 0.00 4.12
3927 6244 3.240302 AGTAGCTAGGTTCAGTTGTGGT 58.760 45.455 0.00 0.00 0.00 4.16
3964 6281 6.329496 TGGCCATTTAAAATCTGATCGTTTC 58.671 36.000 0.00 0.00 0.00 2.78
3967 6284 5.010012 GGATGGCCATTTAAAATCTGATCGT 59.990 40.000 21.84 0.00 0.00 3.73
3974 6291 5.027293 AGCTTGGATGGCCATTTAAAATC 57.973 39.130 21.84 5.59 45.46 2.17
3990 6307 6.203808 TCAATGAAATCATTCTGAGCTTGG 57.796 37.500 5.68 0.00 44.10 3.61
3992 6309 7.496920 TCGTATCAATGAAATCATTCTGAGCTT 59.503 33.333 5.68 0.00 44.10 3.74
4068 6396 4.918810 ACAGACCAAGGTTGAATTGAAC 57.081 40.909 0.00 0.00 0.00 3.18
4071 6403 4.342092 AGGAAACAGACCAAGGTTGAATTG 59.658 41.667 0.00 0.00 0.00 2.32
4076 6408 1.956477 CCAGGAAACAGACCAAGGTTG 59.044 52.381 0.00 0.00 0.00 3.77
4082 6414 1.367346 TATGCCCAGGAAACAGACCA 58.633 50.000 0.00 0.00 0.00 4.02
4107 6443 6.907206 AATATGTGCATTATGTGGTTTTGC 57.093 33.333 0.00 0.00 0.00 3.68
4114 6450 7.912949 AAAGCGTAAATATGTGCATTATGTG 57.087 32.000 0.00 0.00 0.00 3.21
4134 6470 4.926860 AAAATCATTTGGCGCTTAAAGC 57.073 36.364 7.64 0.00 38.02 3.51
4138 6474 4.162812 GACGAAAAATCATTTGGCGCTTA 58.837 39.130 7.64 0.00 33.18 3.09
4140 6476 2.030363 TGACGAAAAATCATTTGGCGCT 60.030 40.909 7.64 0.00 33.18 5.92
4142 6478 3.919804 ACATGACGAAAAATCATTTGGCG 59.080 39.130 0.00 3.96 34.49 5.69
4143 6479 5.844301 AACATGACGAAAAATCATTTGGC 57.156 34.783 0.00 0.00 34.49 4.52
4148 6484 9.345517 CATTGAAGTAACATGACGAAAAATCAT 57.654 29.630 0.00 0.00 37.27 2.45
4149 6485 8.349245 ACATTGAAGTAACATGACGAAAAATCA 58.651 29.630 0.00 0.00 0.00 2.57
4150 6486 8.728088 ACATTGAAGTAACATGACGAAAAATC 57.272 30.769 0.00 0.00 0.00 2.17
4228 6790 6.481976 TGTACAAACAGAATAATAGATGGCCG 59.518 38.462 0.00 0.00 0.00 6.13
4242 6804 6.096673 TGAGCTACATCTTGTACAAACAGA 57.903 37.500 10.03 3.90 36.83 3.41
4259 6821 5.510430 TGAATGAACTCCTCTACTGAGCTA 58.490 41.667 0.00 0.00 38.93 3.32
4279 6841 6.166984 TGTGCATTTAAGGTTTGGAATGAA 57.833 33.333 0.00 0.00 32.61 2.57
4356 6918 3.884693 TGTATATCCTTGTGCTGGCATTG 59.115 43.478 0.00 0.00 0.00 2.82
4360 6922 2.738846 CGATGTATATCCTTGTGCTGGC 59.261 50.000 0.00 0.00 0.00 4.85
4454 7016 1.568504 TCTCCGTGATTAGCCCAACT 58.431 50.000 0.00 0.00 0.00 3.16
4497 7059 1.367659 GCTTCTGCAACTAGCCTCTG 58.632 55.000 3.62 0.00 44.83 3.35
4511 7073 1.669115 AATGACGCGCTGTGCTTCT 60.669 52.632 18.52 4.10 42.11 2.85
4551 7113 2.846206 AGCACTACCCTGATGATTTGGA 59.154 45.455 0.00 0.00 0.00 3.53
4564 7126 0.977395 AGGACTTCACCAGCACTACC 59.023 55.000 0.00 0.00 0.00 3.18
4742 7305 6.265196 ACTTGCCAGTCTCATTGTATTGAAAA 59.735 34.615 0.00 0.00 0.00 2.29
4762 7325 0.393537 AGCCTACATGCTCCACTTGC 60.394 55.000 0.00 0.00 36.75 4.01
4850 7419 2.167281 TCTGATTAGTGACAGCTGCTCC 59.833 50.000 15.27 3.87 34.57 4.70
4892 7461 9.833917 TGATACTAGGATACACTATTATCTCCG 57.166 37.037 0.00 0.00 36.92 4.63
4917 7515 2.162208 GTGGGCGGTATCATGCATATTG 59.838 50.000 0.00 0.00 0.00 1.90
4919 7517 1.630369 AGTGGGCGGTATCATGCATAT 59.370 47.619 0.00 0.00 0.00 1.78
4920 7518 1.055849 AGTGGGCGGTATCATGCATA 58.944 50.000 0.00 0.00 0.00 3.14
4921 7519 1.055849 TAGTGGGCGGTATCATGCAT 58.944 50.000 0.00 0.00 0.00 3.96
4922 7520 1.055849 ATAGTGGGCGGTATCATGCA 58.944 50.000 0.00 0.00 0.00 3.96
4923 7521 1.001974 TCATAGTGGGCGGTATCATGC 59.998 52.381 0.00 0.00 0.00 4.06
4924 7522 3.401033 TTCATAGTGGGCGGTATCATG 57.599 47.619 0.00 0.00 0.00 3.07
4933 7543 4.192317 CACTAAGACCTTTCATAGTGGGC 58.808 47.826 8.51 0.00 44.80 5.36
5262 7876 5.238868 CCTCTTGATTCGATGAATGCATTCT 59.761 40.000 33.23 21.63 37.67 2.40
5345 8008 6.373005 TCTCCTCATAAAACACCATTCTGA 57.627 37.500 0.00 0.00 0.00 3.27
5346 8009 7.337689 TCATTCTCCTCATAAAACACCATTCTG 59.662 37.037 0.00 0.00 0.00 3.02
5360 8023 4.442612 CGTTCAGTCCATCATTCTCCTCAT 60.443 45.833 0.00 0.00 0.00 2.90
5386 8049 2.789213 TGAATCCATCGGTCAGCAAAA 58.211 42.857 0.00 0.00 0.00 2.44
5484 8156 1.596934 CCTGCCGTAAGCCTCTCAA 59.403 57.895 0.00 0.00 42.71 3.02
5506 8178 3.736530 TGTACTACGTCGAGAAGAAGC 57.263 47.619 0.00 0.00 0.00 3.86
5509 8181 3.809279 TGTGTTGTACTACGTCGAGAAGA 59.191 43.478 0.00 0.00 0.00 2.87
5520 8192 5.249780 ACCCCATGAATTGTGTTGTACTA 57.750 39.130 0.00 0.00 0.00 1.82
5521 8193 4.112634 ACCCCATGAATTGTGTTGTACT 57.887 40.909 0.00 0.00 0.00 2.73
5525 8197 2.295909 ACGAACCCCATGAATTGTGTTG 59.704 45.455 0.00 0.00 0.00 3.33
5526 8198 2.556622 GACGAACCCCATGAATTGTGTT 59.443 45.455 0.00 0.00 0.00 3.32
5527 8199 2.159382 GACGAACCCCATGAATTGTGT 58.841 47.619 0.00 0.00 0.00 3.72
5528 8200 1.130373 CGACGAACCCCATGAATTGTG 59.870 52.381 0.00 0.00 0.00 3.33
5529 8201 1.448985 CGACGAACCCCATGAATTGT 58.551 50.000 0.00 0.00 0.00 2.71
5530 8202 0.098728 GCGACGAACCCCATGAATTG 59.901 55.000 0.00 0.00 0.00 2.32
5531 8203 1.029947 GGCGACGAACCCCATGAATT 61.030 55.000 0.00 0.00 0.00 2.17
5532 8204 1.451387 GGCGACGAACCCCATGAAT 60.451 57.895 0.00 0.00 0.00 2.57
5533 8205 2.046700 GGCGACGAACCCCATGAA 60.047 61.111 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.