AutoCloner

Multiple sequence alignment - TraesCS1B01G250200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G250200	chr1B	100.000	2318	0	0	1	2318	442195959	442198276	0.000000e+00	4281.0
1	TraesCS1B01G250200	chr4B	94.107	1663	92	5	1	1661	552663292	552661634	0.000000e+00	2523.0
2	TraesCS1B01G250200	chr6B	92.169	1660	129	1	1	1660	688061274	688062932	0.000000e+00	2344.0
3	TraesCS1B01G250200	chr6B	92.000	50	3	1	1908	1957	135505626	135505674	4.130000e-08	69.4
4	TraesCS1B01G250200	chr7D	88.313	1660	188	6	1	1659	581688419	581690073	0.000000e+00	1986.0
5	TraesCS1B01G250200	chr3A	88.065	1659	189	9	4	1660	724217512	724215861	0.000000e+00	1958.0
6	TraesCS1B01G250200	chr3A	85.668	1549	211	9	5	1552	24630039	24628501	0.000000e+00	1620.0
7	TraesCS1B01G250200	chr2A	87.770	1668	188	14	1	1662	487787726	487789383	0.000000e+00	1936.0
8	TraesCS1B01G250200	chr6A	85.775	1659	222	9	5	1660	138435857	138434210	0.000000e+00	1744.0
9	TraesCS1B01G250200	chr5A	85.376	1689	204	21	1	1659	601425649	601427324	0.000000e+00	1711.0
10	TraesCS1B01G250200	chr7A	86.075	1544	201	10	5	1546	66270755	66269224	0.000000e+00	1648.0
11	TraesCS1B01G250200	chr7A	97.619	42	1	0	1916	1957	226753980	226753939	3.190000e-09	73.1
12	TraesCS1B01G250200	chr3B	92.754	483	28	5	1180	1659	597265050	597264572	0.000000e+00	691.0
13	TraesCS1B01G250200	chr3B	95.213	188	8	1	1472	1659	171087750	171087936	1.740000e-76	296.0
14	TraesCS1B01G250200	chr3B	88.341	223	17	7	1445	1659	195559007	195558786	2.280000e-65	259.0
15	TraesCS1B01G250200	chr3B	89.175	194	15	5	1472	1659	207302923	207302730	1.070000e-58	237.0
16	TraesCS1B01G250200	chr3B	97.727	44	0	1	1915	1957	763000846	763000889	8.880000e-10	75.0
17	TraesCS1B01G250200	chr3B	87.302	63	6	2	1908	1970	593558191	593558131	1.150000e-08	71.3
18	TraesCS1B01G250200	chr1D	91.369	336	27	2	1963	2298	328104230	328104563	2.100000e-125	459.0
19	TraesCS1B01G250200	chr1D	88.406	276	18	6	1659	1922	328103958	328104231	1.030000e-83	320.0
20	TraesCS1B01G250200	chr1D	92.000	50	3	1	1908	1957	3368814	3368766	4.130000e-08	69.4
21	TraesCS1B01G250200	chr1A	89.636	357	31	4	1963	2318	407330419	407330770	1.260000e-122	449.0
22	TraesCS1B01G250200	chr1A	85.870	276	19	8	1659	1922	407330153	407330420	2.270000e-70	276.0
23	TraesCS1B01G250200	chr3D	97.619	42	1	0	1916	1957	552290458	552290499	3.190000e-09	73.1
24	TraesCS1B01G250200	chr7B	92.000	50	3	1	1908	1957	4091525	4091573	4.130000e-08	69.4
25	TraesCS1B01G250200	chr2B	90.741	54	1	4	1908	1957	710325567	710325620	4.130000e-08	69.4
26	TraesCS1B01G250200	chr6D	90.566	53	2	3	1908	1957	89737630	89737682	1.490000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G250200	chr1B	442195959	442198276	2317	False	4281.0	4281	100.0000	1	2318	1	chr1B.!!$F1	2317
1	TraesCS1B01G250200	chr4B	552661634	552663292	1658	True	2523.0	2523	94.1070	1	1661	1	chr4B.!!$R1	1660
2	TraesCS1B01G250200	chr6B	688061274	688062932	1658	False	2344.0	2344	92.1690	1	1660	1	chr6B.!!$F2	1659
3	TraesCS1B01G250200	chr7D	581688419	581690073	1654	False	1986.0	1986	88.3130	1	1659	1	chr7D.!!$F1	1658
4	TraesCS1B01G250200	chr3A	724215861	724217512	1651	True	1958.0	1958	88.0650	4	1660	1	chr3A.!!$R2	1656
5	TraesCS1B01G250200	chr3A	24628501	24630039	1538	True	1620.0	1620	85.6680	5	1552	1	chr3A.!!$R1	1547
6	TraesCS1B01G250200	chr2A	487787726	487789383	1657	False	1936.0	1936	87.7700	1	1662	1	chr2A.!!$F1	1661
7	TraesCS1B01G250200	chr6A	138434210	138435857	1647	True	1744.0	1744	85.7750	5	1660	1	chr6A.!!$R1	1655
8	TraesCS1B01G250200	chr5A	601425649	601427324	1675	False	1711.0	1711	85.3760	1	1659	1	chr5A.!!$F1	1658
9	TraesCS1B01G250200	chr7A	66269224	66270755	1531	True	1648.0	1648	86.0750	5	1546	1	chr7A.!!$R1	1541
10	TraesCS1B01G250200	chr1D	328103958	328104563	605	False	389.5	459	89.8875	1659	2298	2	chr1D.!!$F1	639
11	TraesCS1B01G250200	chr1A	407330153	407330770	617	False	362.5	449	87.7530	1659	2318	2	chr1A.!!$F1	659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
842	852	2.787473	TTGTGGCAGTTATCTCAGGG	57.213	50.0	0.0	0.0	0.0	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2246	2297	0.394899	GAAGGCCTGGGAGTGATTGG	60.395	60.0	5.69	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	66	8.377034	GGGAGACATACTCTACTAGATTCTGTA	58.623	40.741	0.00	0.00	44.37	2.74
167	174	8.223330	AGATTCTTCTGGCAAGGATGTAATAAT	58.777	33.333	0.00	0.00	0.00	1.28
216	223	7.364762	GGTGGAGTAGAATTTGTAGATCCAAGA	60.365	40.741	8.30	0.00	37.34	3.02
376	383	4.223700	TGTGGATGTCACTGCTAGATTCTT	59.776	41.667	0.00	0.00	46.20	2.52
707	717	4.034410	ACAAAGTTTTCTGGGGGCTTAAA	58.966	39.130	0.00	0.00	0.00	1.52
782	792	3.371034	TGCTGGGTGTAGCTATAAGTGA	58.629	45.455	0.00	0.00	44.01	3.41
842	852	2.787473	TTGTGGCAGTTATCTCAGGG	57.213	50.000	0.00	0.00	0.00	4.45
862	872	2.803956	GGCGCAGTACTAACAAGACAAA	59.196	45.455	10.83	0.00	0.00	2.83
879	889	7.234166	ACAAGACAAATGATGAGGGAAAGAAAT	59.766	33.333	0.00	0.00	0.00	2.17
956	967	3.096092	TCTTTTTCACTTGCCCTGTTGT	58.904	40.909	0.00	0.00	0.00	3.32
1359	1396	1.221840	GGCGGAATTCTGGAGCTGA	59.778	57.895	16.03	0.00	0.00	4.26
1443	1480	1.131126	GATCTGATGTGTGGTTTGCGG	59.869	52.381	0.00	0.00	0.00	5.69
1465	1503	3.788797	GCTGTTCTGGTCGTTCTTTTGTG	60.789	47.826	0.00	0.00	0.00	3.33
1470	1508	0.030235	GGTCGTTCTTTTGTGTGGCC	59.970	55.000	0.00	0.00	0.00	5.36
1775	1818	3.384467	AGTGGGGAGTTGTGTTCAAATTG	59.616	43.478	0.00	0.00	35.20	2.32
1808	1852	1.532523	TGCGAAATGAGACAATGCCA	58.467	45.000	0.00	0.00	0.00	4.92
1812	1856	3.005554	CGAAATGAGACAATGCCACTCT	58.994	45.455	0.00	0.00	0.00	3.24
1824	1868	2.544721	TGCCACTCTCTGGAGAATTCT	58.455	47.619	7.95	7.95	43.95	2.40
1882	1926	4.487714	TCTCTAGTAAATGTGCCAAGGG	57.512	45.455	0.00	0.00	0.00	3.95
1922	1973	7.384932	GGTTCTCCCTTTTTACATTCAATTGTG	59.615	37.037	5.13	0.00	0.00	3.33
1923	1974	7.831691	TCTCCCTTTTTACATTCAATTGTGA	57.168	32.000	5.13	0.00	0.00	3.58
1924	1975	8.421249	TCTCCCTTTTTACATTCAATTGTGAT	57.579	30.769	5.13	0.00	32.48	3.06
1925	1976	8.522830	TCTCCCTTTTTACATTCAATTGTGATC	58.477	33.333	5.13	0.00	32.48	2.92
1926	1977	8.421249	TCCCTTTTTACATTCAATTGTGATCT	57.579	30.769	5.13	0.00	32.48	2.75
1927	1978	9.527157	TCCCTTTTTACATTCAATTGTGATCTA	57.473	29.630	5.13	0.00	32.48	1.98
1932	1983	8.667987	TTTACATTCAATTGTGATCTAAACGC	57.332	30.769	5.13	0.00	32.48	4.84
1933	1984	6.500684	ACATTCAATTGTGATCTAAACGCT	57.499	33.333	5.13	0.00	32.48	5.07
1934	1985	6.546395	ACATTCAATTGTGATCTAAACGCTC	58.454	36.000	5.13	0.00	32.48	5.03
1935	1986	6.372659	ACATTCAATTGTGATCTAAACGCTCT	59.627	34.615	5.13	0.00	32.48	4.09
1936	1987	6.801539	TTCAATTGTGATCTAAACGCTCTT	57.198	33.333	5.13	0.00	32.48	2.85
1937	1988	7.899178	TTCAATTGTGATCTAAACGCTCTTA	57.101	32.000	5.13	0.00	32.48	2.10
1938	1989	8.492673	TTCAATTGTGATCTAAACGCTCTTAT	57.507	30.769	5.13	0.00	32.48	1.73
1939	1990	9.594478	TTCAATTGTGATCTAAACGCTCTTATA	57.406	29.630	5.13	0.00	32.48	0.98
1940	1991	9.764363	TCAATTGTGATCTAAACGCTCTTATAT	57.236	29.630	5.13	0.00	0.00	0.86
1944	1995	9.817809	TTGTGATCTAAACGCTCTTATATTTCT	57.182	29.630	0.00	0.00	0.00	2.52
1945	1996	9.817809	TGTGATCTAAACGCTCTTATATTTCTT	57.182	29.630	0.00	0.00	0.00	2.52
1953	2004	8.649973	AACGCTCTTATATTTCTTTACAGAGG	57.350	34.615	0.00	0.00	0.00	3.69
1954	2005	7.210873	ACGCTCTTATATTTCTTTACAGAGGG	58.789	38.462	8.36	8.36	42.53	4.30
1955	2006	7.069578	ACGCTCTTATATTTCTTTACAGAGGGA	59.930	37.037	14.96	0.00	40.49	4.20
1956	2007	7.596995	CGCTCTTATATTTCTTTACAGAGGGAG	59.403	40.741	4.76	0.00	40.49	4.30
1957	2008	8.643324	GCTCTTATATTTCTTTACAGAGGGAGA	58.357	37.037	0.00	0.00	0.00	3.71
1959	2010	9.148879	TCTTATATTTCTTTACAGAGGGAGAGG	57.851	37.037	0.00	0.00	0.00	3.69
1960	2011	6.755542	ATATTTCTTTACAGAGGGAGAGGG	57.244	41.667	0.00	0.00	0.00	4.30
1961	2012	3.847042	TTCTTTACAGAGGGAGAGGGA	57.153	47.619	0.00	0.00	0.00	4.20
1962	2013	3.390175	TCTTTACAGAGGGAGAGGGAG	57.610	52.381	0.00	0.00	0.00	4.30
1963	2014	2.655407	TCTTTACAGAGGGAGAGGGAGT	59.345	50.000	0.00	0.00	0.00	3.85
1976	2027	2.900546	AGAGGGAGTACTTGACAACCTG	59.099	50.000	0.00	0.00	36.78	4.00
1984	2035	2.079158	ACTTGACAACCTGCATGATCG	58.921	47.619	0.00	0.00	0.00	3.69
1985	2036	1.399440	CTTGACAACCTGCATGATCGG	59.601	52.381	0.00	0.00	0.00	4.18
1987	2038	1.210234	TGACAACCTGCATGATCGGAT	59.790	47.619	0.00	0.00	0.00	4.18
1996	2047	5.221925	ACCTGCATGATCGGATAACCTATTT	60.222	40.000	0.00	0.00	0.00	1.40
2090	2141	2.762327	GGGCCATTCAAAGACATCACAT	59.238	45.455	4.39	0.00	0.00	3.21
2101	2152	7.770201	TCAAAGACATCACATCACTTCAAAAA	58.230	30.769	0.00	0.00	0.00	1.94
2107	2158	5.964958	TCACATCACTTCAAAAATCCCTC	57.035	39.130	0.00	0.00	0.00	4.30
2115	2166	6.379703	TCACTTCAAAAATCCCTCTGTTTGAA	59.620	34.615	9.36	9.36	43.86	2.69
2254	2305	3.251484	TCAAGGTCCTTCTCCAATCACT	58.749	45.455	0.00	0.00	0.00	3.41
2274	2325	2.528818	CCAGGCCTTCCCACAGACA	61.529	63.158	0.00	0.00	35.39	3.41
2281	2332	2.223805	GCCTTCCCACAGACAAAAACAG	60.224	50.000	0.00	0.00	0.00	3.16
2288	2340	4.342772	CCACAGACAAAAACAGACGAAAG	58.657	43.478	0.00	0.00	0.00	2.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
167	174	7.419711	CCTTACAAGGTGGTATCTCTTCTTA	57.580	40.000	0.00	0.00	41.41	2.10
376	383	3.117701	TGATTTCCAACAGGGTGAGTCAA	60.118	43.478	0.00	0.00	38.11	3.18
782	792	8.193953	TGAGAGGAATTTTAGCTTTCCAAATT	57.806	30.769	15.61	10.31	43.21	1.82
821	831	3.624777	CCCTGAGATAACTGCCACAATT	58.375	45.455	0.00	0.00	0.00	2.32
822	832	2.684927	GCCCTGAGATAACTGCCACAAT	60.685	50.000	0.00	0.00	0.00	2.71
842	852	4.151689	TCATTTGTCTTGTTAGTACTGCGC	59.848	41.667	5.39	0.00	0.00	6.09
862	872	3.708121	GGCCAATTTCTTTCCCTCATCAT	59.292	43.478	0.00	0.00	0.00	2.45
879	889	3.646715	CGAGGGTTCCCTGGCCAA	61.647	66.667	15.80	0.00	36.43	4.52
956	967	1.518367	AGACCTCCAAACAACCCTGA	58.482	50.000	0.00	0.00	0.00	3.86
1366	1403	1.012841	GCGCAAGAGAATGGAGAAGG	58.987	55.000	0.30	0.00	43.02	3.46
1443	1480	2.354821	ACAAAAGAACGACCAGAACAGC	59.645	45.455	0.00	0.00	0.00	4.40
1465	1503	5.351465	CCAATATCATGTCTATTACGGCCAC	59.649	44.000	2.24	0.00	0.00	5.01
1470	1508	8.922676	GGTAACACCAATATCATGTCTATTACG	58.077	37.037	0.00	0.00	38.42	3.18
1719	1762	8.746922	TGCAGTCAAAAGAATGCTAAAATAAG	57.253	30.769	17.07	0.00	45.16	1.73
1744	1787	1.004044	CAACTCCCCACTCAAGCTCAT	59.996	52.381	0.00	0.00	0.00	2.90
1775	1818	8.207906	GTCTCATTTCGCAACAATTTTACTTTC	58.792	33.333	0.00	0.00	0.00	2.62
1808	1852	4.090090	TCGGAAAGAATTCTCCAGAGAGT	58.910	43.478	8.78	0.00	41.26	3.24
1812	1856	6.546428	AATACTCGGAAAGAATTCTCCAGA	57.454	37.500	8.78	9.04	35.79	3.86
1857	1901	6.483640	CCCTTGGCACATTTACTAGAGAATAC	59.516	42.308	0.00	0.00	39.30	1.89
1882	1926	5.017294	GGGAGAACCTATGATATAGCAGC	57.983	47.826	0.00	0.00	35.85	5.25
1913	1964	6.801539	AAGAGCGTTTAGATCACAATTGAA	57.198	33.333	13.59	0.00	37.82	2.69
1927	1978	9.099454	CCTCTGTAAAGAAATATAAGAGCGTTT	57.901	33.333	0.00	0.00	0.00	3.60
1928	1979	7.711339	CCCTCTGTAAAGAAATATAAGAGCGTT	59.289	37.037	0.00	0.00	0.00	4.84
1929	1980	7.069578	TCCCTCTGTAAAGAAATATAAGAGCGT	59.930	37.037	0.00	0.00	0.00	5.07
1930	1981	7.434492	TCCCTCTGTAAAGAAATATAAGAGCG	58.566	38.462	0.00	0.00	0.00	5.03
1931	1982	8.643324	TCTCCCTCTGTAAAGAAATATAAGAGC	58.357	37.037	0.00	0.00	0.00	4.09
1933	1984	9.148879	CCTCTCCCTCTGTAAAGAAATATAAGA	57.851	37.037	0.00	0.00	0.00	2.10
1934	1985	8.371699	CCCTCTCCCTCTGTAAAGAAATATAAG	58.628	40.741	0.00	0.00	0.00	1.73
1935	1986	8.071854	TCCCTCTCCCTCTGTAAAGAAATATAA	58.928	37.037	0.00	0.00	0.00	0.98
1936	1987	7.601942	TCCCTCTCCCTCTGTAAAGAAATATA	58.398	38.462	0.00	0.00	0.00	0.86
1937	1988	6.453476	TCCCTCTCCCTCTGTAAAGAAATAT	58.547	40.000	0.00	0.00	0.00	1.28
1938	1989	5.850278	TCCCTCTCCCTCTGTAAAGAAATA	58.150	41.667	0.00	0.00	0.00	1.40
1939	1990	4.699994	TCCCTCTCCCTCTGTAAAGAAAT	58.300	43.478	0.00	0.00	0.00	2.17
1940	1991	4.097418	CTCCCTCTCCCTCTGTAAAGAAA	58.903	47.826	0.00	0.00	0.00	2.52
1941	1992	3.077695	ACTCCCTCTCCCTCTGTAAAGAA	59.922	47.826	0.00	0.00	0.00	2.52
1942	1993	2.655407	ACTCCCTCTCCCTCTGTAAAGA	59.345	50.000	0.00	0.00	0.00	2.52
1943	1994	3.108847	ACTCCCTCTCCCTCTGTAAAG	57.891	52.381	0.00	0.00	0.00	1.85
1944	1995	3.596956	AGTACTCCCTCTCCCTCTGTAAA	59.403	47.826	0.00	0.00	0.00	2.01
1945	1996	3.199671	AGTACTCCCTCTCCCTCTGTAA	58.800	50.000	0.00	0.00	0.00	2.41
1946	1997	2.861261	AGTACTCCCTCTCCCTCTGTA	58.139	52.381	0.00	0.00	0.00	2.74
1947	1998	1.688750	AGTACTCCCTCTCCCTCTGT	58.311	55.000	0.00	0.00	0.00	3.41
1948	1999	2.024846	TCAAGTACTCCCTCTCCCTCTG	60.025	54.545	0.00	0.00	0.00	3.35
1949	2000	2.024751	GTCAAGTACTCCCTCTCCCTCT	60.025	54.545	0.00	0.00	0.00	3.69
1950	2001	2.291670	TGTCAAGTACTCCCTCTCCCTC	60.292	54.545	0.00	0.00	0.00	4.30
1951	2002	1.717077	TGTCAAGTACTCCCTCTCCCT	59.283	52.381	0.00	0.00	0.00	4.20
1952	2003	2.233305	TGTCAAGTACTCCCTCTCCC	57.767	55.000	0.00	0.00	0.00	4.30
1953	2004	2.234168	GGTTGTCAAGTACTCCCTCTCC	59.766	54.545	0.00	0.00	0.00	3.71
1954	2005	3.056465	CAGGTTGTCAAGTACTCCCTCTC	60.056	52.174	0.00	0.00	29.59	3.20
1955	2006	2.900546	CAGGTTGTCAAGTACTCCCTCT	59.099	50.000	0.00	0.00	29.59	3.69
1956	2007	2.613223	GCAGGTTGTCAAGTACTCCCTC	60.613	54.545	0.00	0.00	29.59	4.30
1957	2008	1.348036	GCAGGTTGTCAAGTACTCCCT	59.652	52.381	0.00	0.00	31.46	4.20
1958	2009	1.071699	TGCAGGTTGTCAAGTACTCCC	59.928	52.381	0.00	0.00	0.00	4.30
1959	2010	2.543777	TGCAGGTTGTCAAGTACTCC	57.456	50.000	0.00	0.00	0.00	3.85
1960	2011	3.664107	TCATGCAGGTTGTCAAGTACTC	58.336	45.455	0.00	0.00	0.00	2.59
1961	2012	3.769739	TCATGCAGGTTGTCAAGTACT	57.230	42.857	0.00	0.00	0.00	2.73
1962	2013	3.062639	CGATCATGCAGGTTGTCAAGTAC	59.937	47.826	0.00	0.00	0.00	2.73
1963	2014	3.261580	CGATCATGCAGGTTGTCAAGTA	58.738	45.455	0.00	0.00	0.00	2.24
1976	2027	9.601217	AGTATAAAATAGGTTATCCGATCATGC	57.399	33.333	0.00	0.00	39.05	4.06
2014	2065	6.094881	ACGAAAAAGAAGATGGACAAAAGTCA	59.905	34.615	0.00	0.00	0.00	3.41
2070	2121	3.444742	TGATGTGATGTCTTTGAATGGCC	59.555	43.478	0.00	0.00	0.00	5.36
2090	2141	5.890985	TCAAACAGAGGGATTTTTGAAGTGA	59.109	36.000	0.00	0.00	35.54	3.41
2101	2152	4.713792	ACAGAACTTCAAACAGAGGGAT	57.286	40.909	0.00	0.00	0.00	3.85
2156	2207	6.664515	TGCGAAACTTAGTCCAAAATAACAG	58.335	36.000	0.00	0.00	0.00	3.16
2187	2238	9.974980	GGGAAATTAACTGAACAATTGAAGTAA	57.025	29.630	13.59	8.18	0.00	2.24
2193	2244	5.633182	CCGTGGGAAATTAACTGAACAATTG	59.367	40.000	3.24	3.24	0.00	2.32
2197	2248	3.822940	ACCGTGGGAAATTAACTGAACA	58.177	40.909	0.00	0.00	0.00	3.18
2230	2281	4.080638	GTGATTGGAGAAGGACCTTGATCT	60.081	45.833	12.68	2.06	0.00	2.75
2246	2297	0.394899	GAAGGCCTGGGAGTGATTGG	60.395	60.000	5.69	0.00	0.00	3.16
2254	2305	2.935481	CTGTGGGAAGGCCTGGGA	60.935	66.667	5.69	0.00	0.00	4.37
2274	2325	7.168135	GCATCTTTCATTCTTTCGTCTGTTTTT	59.832	33.333	0.00	0.00	0.00	1.94
2281	2332	7.074502	GGATATGCATCTTTCATTCTTTCGTC	58.925	38.462	0.19	0.00	0.00	4.20
2288	2340	5.330295	GCGATGGATATGCATCTTTCATTC	58.670	41.667	28.02	7.67	0.00	2.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.